Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 76 of 235
Found at i:26152251 original size:19 final size:19
Alignment explanation
Indices: 26152227--26152263 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26152217 TATTTTAAAG
* *
26152227 TTATTTTGGTATATAAATA
1 TTATTTAGGTAGATAAATA
26152246 TTATTTAGGTAGATAAAT
1 TTATTTAGGTAGATAAAT
26152264 CTGAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.49
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATA
Found at i:26156309 original size:46 final size:47
Alignment explanation
Indices: 26156205--26156513 Score: 186
Period size: 46 Copynumber: 6.5 Consensus size: 47
26156195 TATAAGAGTT
* * * * * *
26156205 AGTGTAAGACCATGTCTGTGACATGGCATAGGCATTGAGACATAAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCC
* *
26156253 AGTGTGAGA-CATGTCTGGGACATGCATCGGCCTCGTGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
* * *
26156299 AGTGTAAGA-CATGTCTGGGACATGCACCGG-CTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCC
* * * * * * *
26156343 AGTGTAAGACCCTGTCTGGGACATGGTATCGACAC-GGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGACGT-A-AGCC
* * ** *
26156393 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGA-GACGTA-AGCC
* * * * * * *
26156442 AGTGTAAGACAATGTCTAGGACATGGCAT-TGACTTGATGA-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGA-GACGTAAGCC
26156489 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
26156514 GCCTCAACAT
Statistics
Matches: 204, Mismatches: 45, Indels: 26
0.74 0.16 0.09
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 62 0.30
47 38 0.19
48 15 0.07
49 30 0.15
50 31 0.15
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
Found at i:26156458 original size:99 final size:96
Alignment explanation
Indices: 26156340--26156515 Score: 228
Period size: 99 Copynumber: 1.8 Consensus size: 96
26156330 TACGAGATGT
** * * * *
26156340 GTCAGTGTAAGACCCTGTCTGGGACATGGTATCGACACGGAT-ATGTGAGAGCTAGTGTAAGACC
1 GTCAGTGTAAGACAATGTCTAGGACATGGCATCGAC-CGGATGA-AT--GAGCCAGTGTAAGACC
26156404 ATGTCTGGGACATGGCGTCAGCCTCGATTTCGATA
62 ATGTCTGGGACATGGCGTCAGCCTCGATTTCGATA
* **
26156439 GTCAGTGTAAGACAATGTCTAGGACATGGCATTGACTTGATGAATGAGCCAGTGTAAGACCATGT
1 GTCAGTGTAAGACAATGTCTAGGACATGGCATCGACCGGATGAATGAGCCAGTGTAAGACCATGT
26156504 CTGGGACATGGC
66 CTGGGACATGGC
26156516 CTCAACATTA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
96 31 0.46
98 4 0.06
99 32 0.48
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (96 bp):
GTCAGTGTAAGACAATGTCTAGGACATGGCATCGACCGGATGAATGAGCCAGTGTAAGACCATGT
CTGGGACATGGCGTCAGCCTCGATTTCGATA
Found at i:26162080 original size:32 final size:32
Alignment explanation
Indices: 26162039--26162104 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
26162029 AGTTTGAAAA
26162039 TGGCGCCTTATGAGGCTTTATATGGGTGTAAG
1 TGGCGCCTTATGAGGCTTTATATGGGTGTAAG
26162071 TGGCGCCTTATGAGGCTTTATATGGGTGTAAG
1 TGGCGCCTTATGAGGCTTTATATGGGTGTAAG
26162103 TG
1 TG
26162105 TCGAACACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.35
Consensus pattern (32 bp):
TGGCGCCTTATGAGGCTTTATATGGGTGTAAG
Found at i:26164047 original size:46 final size:46
Alignment explanation
Indices: 26163945--26164110 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
26163935 ACATTATGAG
* * * *
26163945 AGCCAGTGTAAGACCATGTATGGGACATGGCATCGACATTGAGACGTA
1 AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATTGGCATCGAGACGTA
* * * *
26163993 AGCTAGTGTGAGACATGTTTGGGACATGCATTGGCCTCGTGACGTA
1 AGCCAGTGTAAGACATGTTTGGGACATGCATTGGCATCGAGACGTA
*
26164039 AGCCAGTGTAAGACATGTTTGGGACATGCATTGGC-TACGAGATGT-
1 AGCCAGTGTAAGACATGTTTGGGACATGCATTGGCAT-CGAGACGTA
*
26164084 -GCCAGTGTAAGACCCTG-TTGGGACATG
1 AGCCAGTGTAAGA-CATGTTTGGGACATG
26164111 GCATCGACAC
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
44 22 0.21
45 4 0.04
46 53 0.51
47 13 0.13
48 11 0.11
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTTTGGGACATGCATTGGCATCGAGACGTA
Found at i:26165376 original size:21 final size:21
Alignment explanation
Indices: 26165326--26165377 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
26165316 ATTTAATTTT
* *
26165326 ACACGGGCATGTTACCCTCTC
1 ACACGGGCGTGTTACCCTCCC
26165347 ACACGGGCGTGTTACCCTCCC
1 ACACGGGCGTGTTACCCTCCC
26165368 ACACGGGCGT
1 ACACGGGCGT
26165378 ATGCCCTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.17, C:0.38, G:0.25, T:0.19
Consensus pattern (21 bp):
ACACGGGCGTGTTACCCTCCC
Found at i:26167450 original size:40 final size:40
Alignment explanation
Indices: 26167395--26167784 Score: 604
Period size: 40 Copynumber: 9.8 Consensus size: 40
26167385 GGATATAGCT
* * *
26167395 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
26167435 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
26167475 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
26167515 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
26167555 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
26167595 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
26167635 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
26167675 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
26167715 ACTCGCACAAATCCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
26167754 ACTAGCGCAGATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
26167785 ATTATCATCC
Statistics
Matches: 323, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 32 0.10
40 289 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:26172116 original size:14 final size:14
Alignment explanation
Indices: 26172097--26172124 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26172087 GCAAGAATGT
26172097 GTTTGTTGATAAAG
1 GTTTGTTGATAAAG
26172111 GTTTGTTGATAAAG
1 GTTTGTTGATAAAG
26172125 TGTGCAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (14 bp):
GTTTGTTGATAAAG
Found at i:26173069 original size:16 final size:16
Alignment explanation
Indices: 26173047--26173091 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
26173037 CGAGCCTAGG
26173047 GGCAAAAGTGTAATTA
1 GGCAAAAGTGTAATTA
* *
26173063 TGCAAAAGTTTAA--A
1 GGCAAAAGTGTAATTA
26173077 GGCAAAAGTGTAATT
1 GGCAAAAGTGTAATT
26173092 TTTTCAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
14 12 0.52
16 11 0.48
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (16 bp):
GGCAAAAGTGTAATTA
Found at i:26173579 original size:46 final size:46
Alignment explanation
Indices: 26173529--26173698 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 46
26173519 TTGAGCATCA
26173529 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * * * *
26173575 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * * * *
26173622 TAGCTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
26173667 CAAGCTCGTTGAGTTGAGTCCTAGTTCACTTA
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
26173699 AGGGCGGGTT
Statistics
Matches: 94, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 50 0.53
47 23 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:26179400 original size:44 final size:44
Alignment explanation
Indices: 26179305--26179410 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
26179295 GCGAATTGGA
* **
26179305 ATAGCACTAAGTGTGCAATATCGAGATAGCTTCAGTTTAATATG
1 ATAGCACTAAGTGTGCGATATCGAGATAGCTTCAGACTAATATG
**
26179349 ATAGCACTAAGTGTGCGATATCGTTATAGCTTCA-ACTAATCAT-
1 ATAGCACTAAGTGTGCGATATCGAGATAGCTTCAGACTAAT-ATG
*
26179392 TTATGCACTAAGTGTGCGA
1 ATA-GCACTAAGTGTGCGA
26179411 GTTCTTAGAG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
43 6 0.11
44 48 0.89
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (44 bp):
ATAGCACTAAGTGTGCGATATCGAGATAGCTTCAGACTAATATG
Found at i:26183380 original size:35 final size:35
Alignment explanation
Indices: 26183334--26183403 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
26183324 TAAAAAGAAA
26183334 ACCTTCGTACCTATAAAAATTTTCAAATGCACCAT
1 ACCTTCGTACCTATAAAAATTTTCAAATGCACCAT
26183369 ACCTTCGTACCTATAAAAATTTTCAAATGCACCAT
1 ACCTTCGTACCTATAAAAATTTTCAAATGCACCAT
26183404 TCTCACAGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (35 bp):
ACCTTCGTACCTATAAAAATTTTCAAATGCACCAT
Found at i:26185748 original size:31 final size:31
Alignment explanation
Indices: 26185705--26185790 Score: 156
Period size: 31 Copynumber: 2.8 Consensus size: 31
26185695 TCAATCTCAG
26185705 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
26185735 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
26185766 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
26185791 TGTACCAATA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
30 5 0.09
31 48 0.91
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:26186050 original size:26 final size:25
Alignment explanation
Indices: 26186012--26186078 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 25
26186002 TTTAATAACC
*
26186012 GGGGCAAAGCCCTTTTTGATAAACT
1 GGGGCAAAGCCCTTTTCGATAAACT
*
26186037 GGGGCAAAAGCCCTTTTCGGTAAACT
1 GGGGC-AAAGCCCTTTTCGATAAACT
26186063 GGGGCAAAGCCCTTTT
1 GGGGCAAAGCCCTTTT
26186079 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 16 0.41
26 23 0.59
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (25 bp):
GGGGCAAAGCCCTTTTCGATAAACT
Found at i:26186053 original size:25 final size:24
Alignment explanation
Indices: 26185995--26186079 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 24
26185985 CTGGAGGCCT
* *
26185995 AGCCTCTTTTAAT-AACCGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
26186019 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTGATAAACTGGGGC-AA
*
26186045 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-GATAAACTGGGGCAA
26186070 AGCCCTTTTG
1 AGCCCTTTTG
26186080 CACTTCCTCC
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
23 1 0.02
24 11 0.20
25 23 0.43
26 19 0.35
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:26186144 original size:18 final size:19
Alignment explanation
Indices: 26186121--26186158 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
26186111 GCATAAATGA
26186121 ATACAT-CATGTGCATATC
1 ATACATACATGTGCATATC
26186139 ATACATAACATGTGCATATC
1 ATACAT-ACATGTGCATATC
26186159 GTATCAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
ATACATACATGTGCATATC
Found at i:26189441 original size:15 final size:15
Alignment explanation
Indices: 26189421--26189461 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
26189411 ACGTCTCCGG
26189421 TCTCTTTGACGGTGA
1 TCTCTTTGACGGTGA
26189436 TCTCTTTGACGGTGA
1 TCTCTTTGACGGTGA
*
26189451 TCTCTCTGACG
1 TCTCTTTGACG
26189462 AACACTTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.39
Consensus pattern (15 bp):
TCTCTTTGACGGTGA
Found at i:26190184 original size:11 final size:11
Alignment explanation
Indices: 26190161--26190221 Score: 86
Period size: 11 Copynumber: 5.3 Consensus size: 11
26190151 AAAAAAAAAA
26190161 TTTGAACTTTTT
1 TTTGAA-TTTTT
26190173 TTTGAATTTTT
1 TTTGAATTTTT
26190184 TTTGAATTTTT
1 TTTGAATTTTT
26190195 TTTGAATTTTT
1 TTTGAATTTTT
*
26190206 TTCGAACTCTTTT
1 TTTGAA-T-TTTT
26190219 TTT
1 TTT
26190222 TTCGCAACAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
11 32 0.71
12 7 0.16
13 6 0.13
ACGTcount: A:0.16, C:0.07, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTGAATTTTT
Found at i:26190196 original size:22 final size:23
Alignment explanation
Indices: 26190161--26190221 Score: 97
Period size: 22 Copynumber: 2.7 Consensus size: 23
26190151 AAAAAAAAAA
26190161 TTTGAACTTTTTTTTGAATTTTT
1 TTTGAACTTTTTTTTGAATTTTT
26190184 TTTGAA-TTTTTTTTGAATTTTT
1 TTTGAACTTTTTTTTGAATTTTT
*
26190206 TTCGAACTCTTTTTTT
1 TTTGAACT-TTTTTTT
26190222 TTCGCAACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
22 21 0.60
23 7 0.20
24 7 0.20
ACGTcount: A:0.16, C:0.07, G:0.08, T:0.69
Consensus pattern (23 bp):
TTTGAACTTTTTTTTGAATTTTT
Found at i:26190222 original size:16 final size:17
Alignment explanation
Indices: 26190201--26190238 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
26190191 TTTTTTTGAA
26190201 TTTTTTTCG-AAC-TCTT
1 TTTTTTTCGCAACAT-TT
26190217 TTTTTTTCGCAACATTT
1 TTTTTTTCGCAACATTT
26190234 TTTTT
1 TTTTT
26190239 AACTTACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.45
17 10 0.50
18 1 0.05
ACGTcount: A:0.13, C:0.16, G:0.05, T:0.66
Consensus pattern (17 bp):
TTTTTTTCGCAACATTT
Found at i:26197500 original size:50 final size:50
Alignment explanation
Indices: 26197436--26197773 Score: 345
Period size: 50 Copynumber: 6.7 Consensus size: 50
26197426 TGAGACAGTT
*
26197436 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
** * * * *
26197486 TTAGGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGTGTGCCCGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * * *
26197536 TTTTGATCACTTATGTAGGACTAAGTGCAGGCTACTATGTGTATCAGATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
26197587 TTAGGTCACGTGTGTAGTACTAAGTGGAGGCTACTATGCGTTCCCG-TTAAT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * * ** *
26197638 TTCGATCACATTTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
26197688 ATAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* *
26197738 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
26197774 TGCATACCAG
Statistics
Matches: 229, Mismatches: 55, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
49 1 0.00
50 153 0.67
51 74 0.32
52 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:26197591 original size:101 final size:101
Alignment explanation
Indices: 26197448--26197773 Score: 397
Period size: 101 Copynumber: 3.2 Consensus size: 101
26197438 AGGTCACGTG
* * ***
26197448 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGTATGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
* *
26197513 AGGCTACTATGTGTGCCCGATAGTTTTGATCAC-TT
66 AGGCTACTATGTGTGCCCGATAATTTCGATCACATT
* *
26197548 ATGTAGGACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTG
1 -TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTG
* * * *
26197613 GAGGCTACTATGCGTTCCCGTTAATTTCGATCACATT
65 CAGGCTACTATGTGTGCCCGATAATTTCGATCACATT
* * *
26197650 TGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGATAAGTCACGTGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
* * * * * * * *
26197715 AGGCTACTACGTGTACCAGAT--TGATAGGTCGCATG
66 AGGCTACTATGTGTGCCCGATAAT-TTCGATCACATT
26197750 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
26197774 TGCATACCAG
Statistics
Matches: 194, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
99 1 0.01
100 31 0.16
101 160 0.82
102 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (101 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
AGGCTACTATGTGTGCCCGATAATTTCGATCACATT
Found at i:26197793 original size:151 final size:151
Alignment explanation
Indices: 26197437--26197794 Score: 396
Period size: 151 Copynumber: 2.4 Consensus size: 151
26197427 GAGACAGTTT
* * * * * **
26197437 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGTATGTGTA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAATGTTCGATCACATGTGTA
* * * * ** *
26197502 GTACTAAGTGCAGGCTACTATGTGTGCCCGATAGTTTTGATCACTTATGTAGGACTAAGTGCAGG
66 GTACTAAGTGCAGGCTACTACGTGTACCAGATAGATAAGATCACGTATGTAGGACTAAGTGCAGG
* * *
26197567 CTACTATGTGTATCAGATGGT
131 CTACTACGTGTACCAGATGGA
* * * *
26197588 TAGGTCACGTGTGTAGTACTAAGTGGAGGCTACTATGCGTTCCCGTTAAT-TTCGATCACATTTG
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG--AATGTTCGATCACATGTG
** * * *
26197652 TAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGATAAG-TCACGTGTGTAGTACTAAGTGCA
64 TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGATAAGATCACGTATGTAGGACTAAGTGCA
*
26197716 GGCTACTACGTGTACCAGATTGA
129 GGCTACTACGTGTACCAGATGGA
* * * *
26197739 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGAGTGCTTCGAT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAATG-TTCGAT
26197795 TACAAGGGTG
Statistics
Matches: 169, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
149 2 0.01
151 124 0.73
152 41 0.24
153 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (151 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAATGTTCGATCACATGTGTA
GTACTAAGTGCAGGCTACTACGTGTACCAGATAGATAAGATCACGTATGTAGGACTAAGTGCAGG
CTACTACGTGTACCAGATGGA
Found at i:26208674 original size:47 final size:47
Alignment explanation
Indices: 26208577--26208701 Score: 164
Period size: 47 Copynumber: 2.7 Consensus size: 47
26208567 GGAATGGAAA
* * * *
26208577 AACGTGGTGCTAAGTGGATATACCATGATTACCATGTTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACCATATTAATACATGT
* *
26208624 AACGTGGTGCTAAGTGGATATGCCACGGTTA-CATATATCAATTCAT-T
1 AACGTGGTGCTAAGTGGATATACCACGGTTACCATAT-T-AATACATGT
26208671 AACGTGGTGCTAAGTGGATATACCACGGTTA
1 AACGTGGTGCTAAGTGGATATACCACGGTTA
26208702 AACATTTAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 4 0.06
47 60 0.87
48 5 0.07
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (47 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTACCATATTAATACATGT
Found at i:26213835 original size:28 final size:28
Alignment explanation
Indices: 26213795--26213852 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
26213785 ATGTCAGCAA
26213795 GTGAAGGTGGAACATCAAGTGCCTACGG
1 GTGAAGGTGGAACATCAAGTGCCTACGG
26213823 GTGAAGGTGGAACATCAAGTGCCTACGG
1 GTGAAGGTGGAACATCAAGTGCCTACGG
26213851 GT
1 GT
26213853 TTACTTCAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.17, G:0.36, T:0.19
Consensus pattern (28 bp):
GTGAAGGTGGAACATCAAGTGCCTACGG
Found at i:26220787 original size:40 final size:40
Alignment explanation
Indices: 26220123--26220769 Score: 1190
Period size: 40 Copynumber: 16.2 Consensus size: 40
26220113 NNNNNNNNNN
* * * *
26220123 CGAAGGCACTTGTGCTAGTGACTA-ATTCCGGGTTAAG-CC
1 CGAAGGCACTTGTGCGAGTTACTATA-ACCGGGCTAAGTCC
* *
26220162 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
* * *
26220202 CGAAAGCATTTGTGCGAGTTAGTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220242 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220282 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220322 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220362 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220402 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220442 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220482 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220522 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220562 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220602 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220642 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220682 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220722 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
26220762 CGAAGGCA
1 CGAAGGCA
26220770 TTTGAGCAAG
Statistics
Matches: 596, Mismatches: 10, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
39 31 0.05
40 565 0.95
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCC
Found at i:26226888 original size:79 final size:81
Alignment explanation
Indices: 26226752--26226936 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26226742 TTGAATGATG
* *
26226752 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
26226816 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26226831 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26226893 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26226911 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26226937 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:26226950 original size:40 final size:40
Alignment explanation
Indices: 26226753--26226936 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
26226743 TGAATGATGT
* * * *
26226753 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26226793 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26226833 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
26226871 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26226912 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26226937 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26226958 original size:79 final size:79
Alignment explanation
Indices: 26226805--26226969 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
26226795 GGACTAAGAT
* * **
26226805 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26226870 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26226884 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26226947 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26226963 CCGAAGG
1 CCGAAGG
26226970 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26229614 original size:35 final size:35
Alignment explanation
Indices: 26229568--26229637 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
26229558 TCGAGTCAGA
26229568 ATCTCTCCAACGATTTCTTCGCTTTAAGTTAAGCT
1 ATCTCTCCAACGATTTCTTCGCTTTAAGTTAAGCT
26229603 ATCTCTCCAACGATTTCTTCGCTTTAAGTTAAGCT
1 ATCTCTCCAACGATTTCTTCGCTTTAAGTTAAGCT
26229638 TCAAGAGGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.11, T:0.40
Consensus pattern (35 bp):
ATCTCTCCAACGATTTCTTCGCTTTAAGTTAAGCT
Found at i:26231871 original size:20 final size:18
Alignment explanation
Indices: 26231824--26231872 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
26231814 TAGAATGTAC
26231824 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
26231841 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
26231861 ATTAAATTAATA
1 ATTAAATTAATA
26231873 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:26239303 original size:51 final size:51
Alignment explanation
Indices: 26239243--26239341 Score: 171
Period size: 51 Copynumber: 1.9 Consensus size: 51
26239233 TTAGGTTGAT
26239243 TTGTTTCTTGATATAAATAATAGTTTTAACCCAATTAACCATTTAAAACAA
1 TTGTTTCTTGATATAAATAATAGTTTTAACCCAATTAACCATTTAAAACAA
* * *
26239294 TTGTTTCTTGATCTAAATAATATTTTTAACTCAATTAACCATTTAAAA
1 TTGTTTCTTGATATAAATAATAGTTTTAACCCAATTAACCATTTAAAA
26239342 AAACTTAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.42
Consensus pattern (51 bp):
TTGTTTCTTGATATAAATAATAGTTTTAACCCAATTAACCATTTAAAACAA
Found at i:26243089 original size:40 final size:40
Alignment explanation
Indices: 26242925--26243082 Score: 255
Period size: 40 Copynumber: 4.0 Consensus size: 40
26242915 NNNNNNNNNN
*
26242925 CGAGTTACTAAATCCGGGTTAAGTTCCGAAGGCATTTGTG
1 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
*
26242965 CGAGTTACTAAATTCGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
*
26243005 CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
* *
26243045 CGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 CGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTG
26243083 AACGAGTAGC
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 108 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
Found at i:26243089 original size:80 final size:80
Alignment explanation
Indices: 26242925--26243105 Score: 251
Period size: 80 Copynumber: 2.3 Consensus size: 80
26242915 NNNNNNNNNN
* * *
26242925 CGAGTTACTAAATCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATTCGGGTTAAGTC
1 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTC
**
26242990 CCGAAGGCATTTGTG
66 CCGAAGGCATTTGAA
* *
26243005 CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGT
1 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT
26243069 CCCGAAGGCATTTGAA
65 CCCGAAGGCATTTGAA
*
26243085 CGAG-TAGCTATATCC-GGTTAA
1 CGAGTTA-CTAAATCCGGGTTAA
26243106 ATTTCGAAGG
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
79 8 0.09
80 80 0.89
81 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (80 bp):
CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTC
CCGAAGGCATTTGAA
Found at i:26243321 original size:30 final size:30
Alignment explanation
Indices: 26243285--26243526 Score: 484
Period size: 30 Copynumber: 8.1 Consensus size: 30
26243275 GTTGATCTTT
26243285 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243315 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243345 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243375 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243405 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243435 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243465 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243495 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26243525 GT
1 GT
26243527 AAGTATGATA
Statistics
Matches: 212, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 212 1.00
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.30
Consensus pattern (30 bp):
GTGTATGAATAAAAGGGTTGGTAATGTGAA
Found at i:26251216 original size:79 final size:81
Alignment explanation
Indices: 26251080--26251264 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
26251070 TTGAATGATG
*
26251080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26251144 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26251159 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26251221 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
26251239 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26251265 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26251278 original size:40 final size:40
Alignment explanation
Indices: 26251081--26251264 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
26251071 TGAATGATGT
* * * *
26251081 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26251121 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26251161 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26251199 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26251240 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26251265 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26251286 original size:79 final size:79
Alignment explanation
Indices: 26251133--26251287 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
26251123 GGACTAAGAT
* **
26251133 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
26251198 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
26251212 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
26251275 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
26251288 ATTCCAAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:26251503 original size:30 final size:30
Alignment explanation
Indices: 26251467--26251528 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
26251457 GTTGATCTTT
26251467 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26251497 GTGTATGAATAAAAGGGTTGGTAATGTGAA
1 GTGTATGAATAAAAGGGTTGGTAATGTGAA
26251527 GT
1 GT
26251529 AAGTATGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.34, T:0.31
Consensus pattern (30 bp):
GTGTATGAATAAAAGGGTTGGTAATGTGAA
Found at i:26255019 original size:51 final size:51
Alignment explanation
Indices: 26254943--26255044 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
26254933 AGCTCCAAGC
*
26254943 CCACTATGGTTGACGATTACTTGCGAGGGTGAAAATAAGGGGTGAGTTTTG
1 CCACTATGGTTGACGATTACCTGCGAGGGTGAAAATAAGGGGTGAGTTTTG
*
26254994 CCACTATGGTTGAGGATTACCTGCGAGGGTGAAAATAAGGGGTGAGTTTTG
1 CCACTATGGTTGACGATTACCTGCGAGGGTGAAAATAAGGGGTGAGTTTTG
26255045 GAAAACTCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.25, C:0.12, G:0.34, T:0.28
Consensus pattern (51 bp):
CCACTATGGTTGACGATTACCTGCGAGGGTGAAAATAAGGGGTGAGTTTTG
Found at i:26255376 original size:28 final size:28
Alignment explanation
Indices: 26255328--26255393 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 28
26255318 GTGACAGAGT
*
26255328 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
26255357 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
26255385 CACCAGAAC
1 CACCAGAAC
26255394 GCTTCCTCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 27 0.77
29 7 0.20
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:26255543 original size:28 final size:28
Alignment explanation
Indices: 26255500--26255557 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
26255490 TAACCCTAGA
*
26255500 GGTATAAAGGTCATTTAGCATACATAGG
1 GGTATAAAGGTAATTTAGCATACATAGG
* *
26255528 GGTATAATGGTAATTTTGCATACATAGG
1 GGTATAAAGGTAATTTAGCATACATAGG
26255556 GG
1 GG
26255558 GTATTCTAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (28 bp):
GGTATAAAGGTAATTTAGCATACATAGG
Found at i:26260152 original size:38 final size:37
Alignment explanation
Indices: 26260101--26260172 Score: 126
Period size: 38 Copynumber: 1.9 Consensus size: 37
26260091 CTTTTCAGCC
*
26260101 CTCAATGCCGATATCACATTAGACAAATAGTCCCTTCG
1 CTCAATGCCGATATCACATTAAACAAATAG-CCCTTCG
26260139 CTCAATGCCGATATCACATTAAACAAATAGCCCT
1 CTCAATGCCGATATCACATTAAACAAATAGCCCT
26260173 CAATCTGTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 4 0.12
38 29 0.88
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.25
Consensus pattern (37 bp):
CTCAATGCCGATATCACATTAAACAAATAGCCCTTCG
Found at i:26260813 original size:24 final size:24
Alignment explanation
Indices: 26260712--26260812 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
26260702 AAGTCTGTCA
*
26260712 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
26260736 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
26260760 GGATAGGATTTAGGAGCTGATGAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
26260784 GGAGAAGATTTAGGAACTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
26260808 GGAGA
1 GGAGA
26260813 ACAGTGTTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.34, C:0.03, G:0.40, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:26262258 original size:27 final size:26
Alignment explanation
Indices: 26262218--26262322 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 26
26262208 AGGAAGCGTC
*
26262218 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
26262245 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
26262272 TTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
26262300 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
26262323 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.03
27 50 0.74
28 16 0.24
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:26262322 original size:54 final size:54
Alignment explanation
Indices: 26262219--26262322 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
26262209 GGAAGCGTCC
*
26262219 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTT
* * *
26262273 TGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCT
26262323 ATTCTGGCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 27 0.60
55 18 0.40
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTT
Found at i:26265576 original size:24 final size:24
Alignment explanation
Indices: 26265532--26265579 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
26265522 TAATTCAATC
*
26265532 TAACCATATTAAGCATACATATAT
1 TAACCATATTAAACATACATATAT
*
26265556 TAACCATATTATAACCT-CATATAT
1 TAACCATATTA-AACATACATATAT
26265580 ATATATGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (24 bp):
TAACCATATTAAACATACATATAT
Found at i:26270017 original size:29 final size:29
Alignment explanation
Indices: 26269982--26270055 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
26269972 GGTTGTGGAT
* *
26269982 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
26270011 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
26270040 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26270056 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:26270598 original size:40 final size:40
Alignment explanation
Indices: 26270372--26270669 Score: 243
Period size: 40 Copynumber: 7.5 Consensus size: 40
26270362 ATGATGTCCA
* *
26270372 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCG
* * * *
26270412 GACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA-TCCG
* * * *
26270452 GGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATATCCG
* * * * *
26270491 GGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATATCCG
* * *
26270531 GGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
* *
26270571 GGCTAAGTTCCGAAGAGCATTCGTGCTAATGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
* ** * *
26270611 TGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
*
26270651 GGCTAGGTCCCGAAGAGCA
1 GGCTAAGTCCCGAAGAGCA
26270670 ATCATGCTGG
Statistics
Matches: 217, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
39 35 0.16
40 162 0.75
41 20 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
Found at i:26274451 original size:47 final size:47
Alignment explanation
Indices: 26274399--26275885 Score: 2857
Period size: 47 Copynumber: 31.6 Consensus size: 47
26274389 GATAATTGTG
*
26274399 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274446 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274493 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274540 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274587 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274636 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274683 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274730 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274777 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274824 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274871 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274918 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26274965 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275012 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275059 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275106 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275153 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275200 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275247 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275294 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275343 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275390 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275437 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275484 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275531 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275578 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275625 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275672 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275719 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26275766 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
26275813 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26275860 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
26275886 TCCCGAAGGG
Statistics
Matches: 1425, Mismatches: 11, Indels: 8
0.99 0.01 0.01
Matches are distributed among these distances:
47 1331 0.93
49 94 0.07
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26276060 original size:37 final size:37
Alignment explanation
Indices: 26276004--26276082 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26275994 CCGAGCTCTA
* *
26276004 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26276041 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26276078 AAGAC
1 AAGAC
26276083 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26287026 original size:44 final size:44
Alignment explanation
Indices: 26286963--26287047 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
26286953 TTAGGTATCA
* * *
26286963 CATCCATTATGAACTTGGACCAACTCAACGAGTTCGGATGCTCG
1 CATCCATAATGAACTTGGACCAACTCAACGAGCTCAGATGCTCG
26287007 CATCCATAATGAACTTGGACCAACTCAACGAGCTCAGATGC
1 CATCCATAATGAACTTGGACCAACTCAACGAGCTCAGATGC
26287048 CTCAAATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
CATCCATAATGAACTTGGACCAACTCAACGAGCTCAGATGCTCG
Found at i:26287529 original size:28 final size:28
Alignment explanation
Indices: 26287491--26287547 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
26287481 ATAGAATTAA
26287491 AAAAAAAAGAAGGATGATATCATCCCTT
1 AAAAAAAAGAAGGATGATATCATCCCTT
26287519 AAAAAAAAGAAGGATGATATCATCCCTT
1 AAAAAAAAGAAGGATGATATCATCCCTT
26287547 A
1 A
26287548 CTCATCTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.21
Consensus pattern (28 bp):
AAAAAAAAGAAGGATGATATCATCCCTT
Found at i:26288531 original size:46 final size:47
Alignment explanation
Indices: 26288383--26288554 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 47
26288373 TTTGTTTGTA
* * * *
26288383 AGCCAGTGTAAGACATGTCTGGGACATGCATTAGCCAC-ATTA-TGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GACTTAG
* * * * *
26288429 AGCCAGTGTAAGATCATATCTGAGACGTGGCATCAGCATTGAGAC-TAG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACTTAG
* *
26288477 AGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGACTTA-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACTTAG
*
26288523 AGCCAGTGTAAGACATGTCTGGAACATGCATC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC
26288555 GACTACATGG
Statistics
Matches: 103, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
46 55 0.53
47 24 0.23
48 23 0.22
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACTTAG
Found at i:26293377 original size:37 final size:37
Alignment explanation
Indices: 26293324--26293459 Score: 211
Period size: 37 Copynumber: 3.7 Consensus size: 37
26293314 CGAATAGTCC
* *
26293324 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
26293361 CCACACGTAGTCATCGGGTCTTA-CCAGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCA-GACATAATCT
* *
26293398 CCACACGTAGTCATCTGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
*
26293435 CCACACGTAGTCATCGGGTTTTACC
1 CCACACGTAGTCATCGGGTCTTACC
26293460 TGGAATATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 3 0.03
37 86 0.95
38 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
Found at i:26294616 original size:48 final size:48
Alignment explanation
Indices: 26293633--26294615 Score: 1912
Period size: 48 Copynumber: 20.5 Consensus size: 48
26293623 CTAGCCGAAT
* *
26293633 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26293681 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
*
26293729 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26293777 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26293825 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26293873 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26293921 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26293969 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294017 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294065 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294113 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294161 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294209 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294257 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294305 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294353 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294401 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294449 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
26294497 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
* *
26294545 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
*
26294593 CATTAGCCATTCGGCTTTACCAC
1 CACTAGCCATTCGGCTTTACCAC
26294616 ACACATATAT
Statistics
Matches: 928, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 928 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
Found at i:26295045 original size:20 final size:20
Alignment explanation
Indices: 26295020--26295059 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26295010 AAATTTTATC
*
26295020 TTATAACCATTTTTTAAAAA
1 TTATAACCATTTTCTAAAAA
**
26295040 TTATAATGATTTTCTAAAAA
1 TTATAACCATTTTCTAAAAA
26295060 CAGAACAGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (20 bp):
TTATAACCATTTTCTAAAAA
Found at i:26296226 original size:9 final size:9
Alignment explanation
Indices: 26296212--26296237 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26296202 CGAAAATCAC
26296212 CATCATTAA
1 CATCATTAA
26296221 CATCATTAA
1 CATCATTAA
26296230 CATCATTA
1 CATCATTA
26296238 TCAAACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (9 bp):
CATCATTAA
Found at i:26306908 original size:56 final size:56
Alignment explanation
Indices: 26306801--26306908 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 56
26306791 GATTTGTGAG
* *
26306801 ACCCTAAACTATTATTACATGTAAAACCTATATATTGCATGCGAACTCCATAATAA
1 ACCCTAAACTATTATTACATGTAAAACCTATATATTGCAGGCGAACCCCATAATAA
* * * *
26306857 ACCCTAAATTGTTATTACATGCT-AACCCTATATATTGCAGGTGAACCCCATA
1 ACCCTAAACTATTATTACATG-TAAAACCTATATATTGCAGGCGAACCCCATA
26306909 TGTTAGATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 44 0.98
57 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (56 bp):
ACCCTAAACTATTATTACATGTAAAACCTATATATTGCAGGCGAACCCCATAATAA
Found at i:26313911 original size:38 final size:38
Alignment explanation
Indices: 26313849--26313929 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
26313839 ACATTTCACT
* *
26313849 CTCAATCATATAAACAGTAATTCATTCGATA-ACAGTAA
1 CTCATTCATATAAACAGTAATTCA-TCCATATACAGTAA
* * *
26313887 CTCATTCATTTAAATAGTACTTCATCCATATACAGTAA
1 CTCATTCATATAAACAGTAATTCATCCATATACAGTAA
*
26313925 TTCAT
1 CTCAT
26313930 CCGTGTAACA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
37 5 0.14
38 31 0.86
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.35
Consensus pattern (38 bp):
CTCATTCATATAAACAGTAATTCATCCATATACAGTAA
Found at i:26313928 original size:18 final size:17
Alignment explanation
Indices: 26313861--26313931 Score: 52
Period size: 18 Copynumber: 3.9 Consensus size: 17
26313851 CAATCATATA
*
26313861 AACAGTAATTCATTCGAT
1 AACAGTAATTCA-TCCAT
* *
26313879 AACAGTAACTCATTCATTT
1 AACAGTAATTCATCCA--T
* *
26313898 AAATAGTACTTCATCCAT
1 -AACAGTAATTCATCCAT
26313916 ATACAGTAATTCATCC
1 A-ACAGTAATTCATCC
26313932 GTGTAACACA
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
17 3 0.08
18 24 0.60
19 1 0.03
20 12 0.30
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (17 bp):
AACAGTAATTCATCCAT
Found at i:26315721 original size:28 final size:28
Alignment explanation
Indices: 26315653--26315834 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
26315643 CATGAGATTG
* * * *
26315653 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
26315682 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
26315710 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26315738 GTACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
26315766 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
26315794 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26315821 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26315835 GACTTAATAT
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 23 0.16
28 101 0.71
29 18 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26317466 original size:25 final size:26
Alignment explanation
Indices: 26317438--26317488 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
26317428 CATTTCTACT
26317438 CTTTCAAGC-TAT-GATCAGTAAGCTC
1 CTTTCAAGCTTATGGA-CAGTAAGCTC
**
26317463 CTTTTGAGCTTATGGACAGTAAGCTC
1 CTTTCAAGCTTATGGACAGTAAGCTC
26317489 TATTGAGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 13 0.59
27 2 0.09
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
CTTTCAAGCTTATGGACAGTAAGCTC
Found at i:26317541 original size:24 final size:22
Alignment explanation
Indices: 26317478--26317541 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 22
26317468 GAGCTTATGG
*
26317478 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTA-CGAGCTGAA
*
26317501 ACAGTAAGCTCCGACGAGCTGAAA
1 ACAGTAAGCT-CTACGAGCTG-AA
*
26317525 ATAGTAAGCTCTTACGA
1 ACAGTAAGCTC-TACGA
26317542 TTTGATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
23 17 0.50
24 17 0.50
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (22 bp):
ACAGTAAGCTCTACGAGCTGAA
Found at i:26321856 original size:43 final size:43
Alignment explanation
Indices: 26321776--26321858 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
26321766 CGTGGTCGCG
* * **
26321776 AAACCACTGTTTCGACTAGGCCCTAATTTGGGATGTTACACCA
1 AAACCACTGTTTCGACTAGACCCAAAAATGGGATGTTACACCA
* * *
26321819 AAACCACTGTTTTGATTAGACCCAAAAATGGGTTGTTACA
1 AAACCACTGTTTCGACTAGACCCAAAAATGGGATGTTACA
26321859 ATGACTTTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (43 bp):
AAACCACTGTTTCGACTAGACCCAAAAATGGGATGTTACACCA
Found at i:26324110 original size:47 final size:47
Alignment explanation
Indices: 26324041--26324135 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
26324031 GGCCACCAAG
26324041 TTAATCACCTCAACTCACAAAAATCACCCACCAAGTCCTCTGGCTCT
1 TTAATCACCTCAACTCACAAAAATCACCCACCAAGTCCTCTGGCTCT
*
26324088 TTAATCACCTCAACTCACAAAAATCACCCACCAAGTCCTCTGGGTCT
1 TTAATCACCTCAACTCACAAAAATCACCCACCAAGTCCTCTGGCTCT
26324135 T
1 T
26324136 CCGATTCTGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.32, C:0.37, G:0.07, T:0.24
Consensus pattern (47 bp):
TTAATCACCTCAACTCACAAAAATCACCCACCAAGTCCTCTGGCTCT
Found at i:26328490 original size:21 final size:21
Alignment explanation
Indices: 26328464--26328505 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
26328454 TATTATAAAT
26328464 ATAATTTAATAAAAATAATAA
1 ATAATTTAATAAAAATAATAA
*
26328485 ATAATTTAATAAAAATCATAA
1 ATAATTTAATAAAAATAATAA
26328506 TATATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATTTAATAAAAATAATAA
Found at i:26328528 original size:21 final size:20
Alignment explanation
Indices: 26328458--26328533 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 20
26328448 TAGAATTATT
*
26328458 ATAA-ATATAATTTAATAAAA
1 ATAATATATAATTTTA-AAAA
*
26328478 ATAATAAATAATTTAATAAAAA
1 ATAATATATAATTT--TAAAAA
26328500 TCATAATATATAATATTTAAAAA
1 --ATAATATATAAT-TTTAAAAA
26328523 ATAATATATAA
1 ATAATATATAA
26328534 CCTACTTTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
20 4 0.09
21 19 0.40
22 4 0.09
23 7 0.15
24 11 0.23
25 2 0.04
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAATATATAATTTTAAAAA
Found at i:26333149 original size:68 final size:68
Alignment explanation
Indices: 26333063--26333208 Score: 256
Period size: 68 Copynumber: 2.1 Consensus size: 68
26333053 CACTCATGCT
* * *
26333063 ACCTAGCTACATTCATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATTCCGTATCACACTT
1 ACCTAGCTACATTCATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACAT
26333128 GTG
66 GTG
*
26333131 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACAT
1 ACCTAGCTACATTCATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACAT
26333196 GTG
66 GTG
26333199 ACCTAGCTAC
1 ACCTAGCTAC
26333209 TATATAGTAT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 74 1.00
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (68 bp):
ACCTAGCTACATTCATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACAT
GTG
Found at i:26333241 original size:68 final size:67
Alignment explanation
Indices: 26333063--26333234 Score: 215
Period size: 68 Copynumber: 2.5 Consensus size: 67
26333053 CACTCATGCT
* * * *
26333063 ACCTAGCTACAT-TCATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATTCCGTATCACACT
1 ACCTAGCTACATAT-ATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACA
26333127 TGTG
64 TGTG
* *
26333131 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACAT
26333196 GTG
65 GTG
26333199 ACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ACCTAGCTAC-ATATA-TATCTACGTAGCTC-TCTTGT
26333235 ACACATGATG
Statistics
Matches: 95, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
67 1 0.01
68 85 0.89
69 5 0.05
70 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (67 bp):
ACCTAGCTACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCGTAACACACATG
TG
Found at i:26337274 original size:68 final size:66
Alignment explanation
Indices: 26337202--26337351 Score: 169
Period size: 67 Copynumber: 2.2 Consensus size: 66
26337192 CATCATGTGT
* * * *
26337202 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAGGGACACCA
26337265 TGTAG
62 TGTAG
** * *
26337270 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAGGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAGGGACACCATGT
26337335 AG
65 AG
26337337 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
26337352 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAGGGACACCATGTA
G
Found at i:26337307 original size:64 final size:64
Alignment explanation
Indices: 26337226--26337397 Score: 195
Period size: 67 Copynumber: 2.7 Consensus size: 64
26337216 AGACATTATG
* * *
26337226 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
26337290 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAGGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
26337355 AA
63 AA
* * *
26337357 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT
26337398 GTATAAGAGA
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
63 9 0.10
64 25 0.28
66 21 0.24
67 31 0.35
68 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26341270 original size:55 final size:54
Alignment explanation
Indices: 26341175--26341324 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
26341165 CTACTTTGTT
* ** * *
26341175 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
26341229 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
26341284 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
26341325 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:26341287 original size:27 final size:27
Alignment explanation
Indices: 26341147--26341324 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
26341137 TAAATTGTAC
26341147 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
26341174 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
26341200 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
26341228 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
26341256 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
26341283 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
26341310 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26341325 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:26341288 original size:82 final size:81
Alignment explanation
Indices: 26341148--26341303 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
26341138 AAATTGTACA
* * * *
26341148 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
26341213 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
26341229 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
26341292 TGTGCGAGTTGA
63 TGTGCGAATTGA
26341304 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:26349272 original size:55 final size:54
Alignment explanation
Indices: 26349177--26349326 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
26349167 CTACTTTGTT
* ** * *
26349177 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
26349231 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
26349286 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
26349327 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:26349289 original size:27 final size:27
Alignment explanation
Indices: 26349149--26349326 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
26349139 TAAATTGTAC
26349149 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
26349176 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
26349202 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
26349230 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
26349258 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
26349285 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
26349312 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26349327 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:26349290 original size:82 final size:81
Alignment explanation
Indices: 26349150--26349305 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
26349140 AAATTGTACA
* * * *
26349150 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
26349215 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
26349231 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
26349294 TGTGCGAGTTGA
63 TGTGCGAATTGA
26349306 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:26356451 original size:40 final size:40
Alignment explanation
Indices: 26356350--26356660 Score: 437
Period size: 40 Copynumber: 7.8 Consensus size: 40
26356340 TGGATGAAAA
* ** * * **
26356350 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
26356390 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
26356429 CCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
26356469 CCGCGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
26356509 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
26356549 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
26356589 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
26356629 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26356661 AGCTATATCC
Statistics
Matches: 246, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
39 31 0.13
40 213 0.87
41 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:26362778 original size:47 final size:49
Alignment explanation
Indices: 26362698--26362840 Score: 204
Period size: 47 Copynumber: 3.0 Consensus size: 49
26362688 GCTTTATCAT
* *
26362698 ATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTA
*
26362747 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC-TTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
*
26362794 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
26362841 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
47 38 0.44
48 33 0.38
49 15 0.17
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
Found at i:26362799 original size:71 final size:72
Alignment explanation
Indices: 26362698--26362839 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
26362688 GCTTTATCAT
*
26362698 ATAACTGGAGGCCTAGCCTCTTTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAA
1 ATAACTGGAGGCATAGCCTCTTTTAGTAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAA
26362762 GCCCTTTA
65 GCCCTTTA
*
26362770 ATAACTGG-GGCATAAGCC-CTTTT-GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 ATAACTGGAGGCAT-AGCCTCTTTTAG-TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
26362832 AGCCCTTT
64 AGCCCTTT
26362840 TGCACTTCCT
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
70 1 0.02
71 46 0.71
72 18 0.28
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGAGGCATAGCCTCTTTTAGTAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTTA
Found at i:26362841 original size:24 final size:24
Alignment explanation
Indices: 26362698--26362841 Score: 197
Period size: 24 Copynumber: 6.0 Consensus size: 24
26362688 GCTTTATCAT
*
26362698 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
26362722 AGTAACTGGGGCA-AAGCCCTTTTTA
1 A-TAACTGGGGCATAAGCCC-TTTTG
*
26362747 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
26362770 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26362794 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26362818 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26362842 CACTTCCTCC
Statistics
Matches: 112, Mismatches: 2, Indels: 12
0.89 0.02 0.10
Matches are distributed among these distances:
23 24 0.21
24 74 0.66
25 14 0.12
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:26362916 original size:20 final size:20
Alignment explanation
Indices: 26362893--26362955 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
26362883 GAACATCTCG
*
26362893 TGTGCATATCACACATATCA
1 TGTGCATATCATACATATCA
*
26362913 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
26362933 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
26362953 TGT
1 TGT
26362956 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:26371652 original size:31 final size:31
Alignment explanation
Indices: 26371616--26371677 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
26371606 TGATCCAAAC
*
26371616 AATAGTTGCCTAATTCATTTTCAACATTCCA
1 AATAGTTGCCTAAATCATTTTCAACATTCCA
*
26371647 AATAGTTGCCTAAATCTTTTTCAACATTCCA
1 AATAGTTGCCTAAATCATTTTCAACATTCCA
26371678 TATTTCCTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (31 bp):
AATAGTTGCCTAAATCATTTTCAACATTCCA
Found at i:26372993 original size:27 final size:26
Alignment explanation
Indices: 26372963--26373047 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 26
26372953 AGCAAAGTTG
*
26372963 CCAGAAATAGTAAATGTGGCAAAGCCA
1 CCAG-AATAGTAAATGTGGCATAGCCA
* *
26372990 CCAGTATCAGTAATTGTGGCATAGCCA
1 CCAGAAT-AGTAAATGTGGCATAGCCA
* * * *
26373017 CCACTAACAGTGAATGTGGCATAGTCA
1 CCA-GAATAGTAAATGTGGCATAGCCA
26373044 CCAG
1 CCAG
26373048 TACAGAACTT
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
26 2 0.04
27 43 0.93
28 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAATAGTAAATGTGGCATAGCCA
Found at i:26373223 original size:27 final size:26
Alignment explanation
Indices: 26373191--26373293 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 26
26373181 GGCATAATCA
26373191 TCATTTTACCATACAGGGGTATTA-GG
1 TCATTTTACC-TACAGGGGTATTACGG
*
26373217 TCAATTTACTCTACAGGGGCT-TTACGG
1 TCATTTTAC-CTACAGGGG-TATTACGG
* *
26373244 TCATTTCACCCTACAGGGGCATTACGG
1 TCATTTTA-CCTACAGGGGTATTACGG
** *
26373271 TTTTTTTACCTATTAGGGGTATT
1 TCATTTTACCTA-CAGGGGTATT
26373294 TTAGTCATTT
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
26 23 0.37
27 38 0.61
28 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (26 bp):
TCATTTTACCTACAGGGGTATTACGG
Found at i:26373480 original size:27 final size:26
Alignment explanation
Indices: 26373423--26373629 Score: 200
Period size: 27 Copynumber: 7.7 Consensus size: 26
26373413 TCCAAATTAA
* * *
26373423 GGGTATTTCGGTACTTTT-CAAAATTAG
1 GGGTATTTTGGTAATTTTAC-AAA-TCG
*
26373450 GGGTATTTTGGTAACTTTACAAATCG
1 GGGTATTTTGGTAATTTTACAAATCG
* * *
26373476 CGGGTATTTCGATAATTTTACAAGTCG
1 -GGGTATTTTGGTAATTTTACAAATCG
* * **
26373503 AAGGTATTTCGGTAATTTTACAGGTCG
1 -GGGTATTTTGGTAATTTTACAAATCG
*
26373530 AGGGTATTTTGGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAATC-G
* *
26373558 GGGTATTTTGGTTATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TCG
*
26373585 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TCG
26373612 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
26373630 GTAAACCAAA
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 150 0.97
28 3 0.02
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATCG
Found at i:26373635 original size:27 final size:27
Alignment explanation
Indices: 26373396--26373629 Score: 192
Period size: 27 Copynumber: 8.7 Consensus size: 27
26373386 TGAAAGTCAA
* * * *
26373396 GGGTATTTCT-GTAACTTTCCAAATTAA
1 GGGTATTT-TGGTAATTTTACAAACTAG
* * *
26373423 GGGTATTTCGGTACTTTT-CAAAATTAG
1 GGGTATTTTGGTAATTTTAC-AAACTAG
* *
26373450 GGGTATTTTGGTAACTTTACAAA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
26373476 CGGGTATTTCGATAATTTTAC-AAGTCG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * ** *
26373503 AAGGTATTTCGGTAATTTTAC-AGGTCG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
26373530 AGGGTATTTTGGTAATTTCACAAA-TCAG
1 -GGGTATTTTGGTAATTTTACAAACT-AG
*
26373558 GGGTATTTTGGTTATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
26373585 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
26373612 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
26373630 GTAAACCAAA
Statistics
Matches: 176, Mismatches: 23, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.03
27 167 0.95
28 4 0.02
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:26373643 original size:27 final size:27
Alignment explanation
Indices: 26373448--26373653 Score: 177
Period size: 27 Copynumber: 7.7 Consensus size: 27
26373438 TTTCAAAATT
* *
26373448 AGGGGTATTTTGGTAACTTTACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * **
26373475 -GCGGGTATTTCGATAATTTTACAAGTC
1 AG-GGGTATTTTGGTAATTTTACAAACC
* * ***
26373502 -GAAGGTATTTCGGTAATTTTACAGGTC
1 AG-GGGTATTTTGGTAATTTTACAAACC
* *
26373529 -GAGGGTATTTTGGTAATTTCACAAATC
1 AG-GGGTATTTTGGTAATTTTACAAACC
* *
26373556 AGGGGTATTTTGGTTATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
26373583 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
**
26373610 AGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
**
26373637 AAAGGTA-TTTGGTAATT
1 AGGGGTATTTTGGTAATT
26373654 CTACCCTACA
Statistics
Matches: 154, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
26 11 0.07
27 142 0.92
28 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:26373680 original size:27 final size:27
Alignment explanation
Indices: 26373648--26373718 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
26373638 AAGGTATTTG
26373648 GTAATTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
*
26373675 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
26373702 GTAATGCTAGCCTACAG
1 GTAATTCTACCCTACAG
26373719 ATATGAGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTCA
Found at i:26377857 original size:24 final size:24
Alignment explanation
Indices: 26377803--26377859 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
26377793 TTTACTGTAT
*
26377803 TTATTATTACAGATATTTTAAATT
1 TTATTATTACAGATATTTTAAATA
* * *
26377827 TTTTTATTAGATATATTTATAAA-A
1 TTATTATTACAGATATTT-TAAATA
26377851 TTATTATTA
1 TTATTATTA
26377860 TTATTATTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (24 bp):
TTATTATTACAGATATTTTAAATA
Found at i:26377858 original size:3 final size:3
Alignment explanation
Indices: 26377850--26377878 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26377840 TATTTATAAA
26377850 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
26377879 ATAGGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:26383132 original size:43 final size:42
Alignment explanation
Indices: 26383085--26383183 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
26383075 TCCCAGACGA
* * * **
26383085 GGTCTTACATGTAATCAGATATCGATGCCACTGTCCCAGCCAG
1 GGTCTTACACGTAATCAGATA-CGATGCCAATATCCCAAACAG
* * *
26383128 GGTCTTACACGAAATCATATACGATGCCAATATCCCAAACAT
1 GGTCTTACACGTAATCAGATACGATGCCAATATCCCAAACAG
26383170 GGTCTTACACGTAA
1 GGTCTTACACGTAA
26383184 ATCTCAAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 29 0.62
43 18 0.38
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGTAATCAGATACGATGCCAATATCCCAAACAG
Found at i:26383174 original size:42 final size:43
Alignment explanation
Indices: 26383066--26383235 Score: 157
Period size: 43 Copynumber: 4.0 Consensus size: 43
26383056 AGCTTATACA
* * * *
26383066 ATGCCAACGTCCCAGACGA-GGTCTTACATGTAATCAGATATCG
1 ATGCCAATGTCCCAGAC-ATGGTCTTACACGAAATCATATATCG
* * *
26383109 ATGCCACTGTCCCAGCCAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
* * * *
26383151 ATGCCAATATCCCAAACATGGTCTTACACGTAAATC-TCAAATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCAT-ATATCG
** * *
26383195 ATGCCAATGTCCCAGATGTGGTCTTACACGAAGTCACATAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATAT
26383236 TGGAATCCTA
Statistics
Matches: 102, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 29 0.28
43 46 0.45
44 27 0.26
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
Found at i:26390829 original size:43 final size:43
Alignment explanation
Indices: 26390782--26390871 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
26390772 TATTACATGT
* *
26390782 AATCAAATATCAATGCCATTATCCCAGACAGGGTCTTAAACG-A
1 AATCAAATAT-AATGCCAATATCCCAAACAGGGTCTTAAACGTA
* * * *
26390825 AATCATATATGATGCCAATATCCCAAACATGGTCTTATACGTA
1 AATCAAATATAATGCCAATATCCCAAACAGGGTCTTAAACGTA
26390868 AATC
1 AATC
26390872 TCAAATCGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
42 26 0.65
43 14 0.35
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (43 bp):
AATCAAATATAATGCCAATATCCCAAACAGGGTCTTAAACGTA
Found at i:26390848 original size:42 final size:44
Alignment explanation
Indices: 26390794--26390895 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 44
26390784 TCAAATATCA
* * *
26390794 ATGCCATTATCCCAGACAGGGTCTTAAACG-AAATCAT-ATAT-G
1 ATGCCAATATCCCAAACAGGGTCTTAAACGTAAATC-TCAAATCG
* *
26390836 ATGCCAATATCCCAAACATGGTCTTATACGTAAATCTCAAATCG
1 ATGCCAATATCCCAAACAGGGTCTTAAACGTAAATCTCAAATCG
*
26390880 ATGCCAATGTCCCAAA
1 ATGCCAATATCCCAAA
26390896 TGTGGTCTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
42 27 0.53
43 8 0.16
44 16 0.31
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (44 bp):
ATGCCAATATCCCAAACAGGGTCTTAAACGTAAATCTCAAATCG
Found at i:26410780 original size:46 final size:46
Alignment explanation
Indices: 26410730--26410994 Score: 369
Period size: 46 Copynumber: 5.7 Consensus size: 46
26410720 TGGTTGAGCA
26410730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26410776 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26410822 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
26410867 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
26410915 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26410960 ACCTGAGCTCGTTGAGTTGAGCCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26410995 GGGGCGGGTT
Statistics
Matches: 197, Mismatches: 12, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
45 5 0.03
46 148 0.75
47 29 0.15
48 3 0.02
50 4 0.02
51 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26410977 original size:139 final size:139
Alignment explanation
Indices: 26410727--26410989 Score: 474
Period size: 139 Copynumber: 1.9 Consensus size: 139
26410717 GGATGGTTGA
26410727 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
** *
26410792 TGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAA
66 TGAGTCCGAGTTCACTTATGGATGCGAATCACCGAACTCGTTGAGTTGAGCCCGAGTTCGTGAAA
26410857 TGTAACTAG
131 TGTAACTAG
26410866 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
26410931 TGAGTCCGAGTTCACTTATGGATGCGAA-CACCTGAGCTCGTTGAGTTGAGCCCGAGTTC
66 TGAGTCCGAGTTCACTTATGGATGCGAATCACC-GAACTCGTTGAGTTGAGCCCGAGTTC
26410990 ACTTAGGGGC
Statistics
Matches: 119, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
138 2 0.02
139 117 0.98
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (139 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCACTTATGGATGCGAATCACCGAACTCGTTGAGTTGAGCCCGAGTTCGTGAAA
TGTAACTAG
Found at i:26413660 original size:37 final size:37
Alignment explanation
Indices: 26413610--26413688 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26413600 TTATTACGAA
* * *
26413610 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26413647 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26413684 GTCTT
1 GTCTT
26413689 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26414033 original size:51 final size:51
Alignment explanation
Indices: 26413866--26414905 Score: 1728
Period size: 51 Copynumber: 20.8 Consensus size: 51
26413856 TATCACATAT
* * *
26413866 ATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTA-T-CACATAT--
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
* * *
26413913 ATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTA-T-CACATAT--
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26413960 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414011 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414062 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414113 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414164 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414215 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414266 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414317 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414368 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414419 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414470 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414521 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
26414572 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
*** * *
26414623 ATACACTTTCACATTCATCACATCGGCTATTAGGCCGGCCTTATCACACAT--
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCC-TTATTA-CATATATAC
26414674 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
* *
26414725 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA-T-CACACAT--
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
* * *
26414772 ATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA-T-CACACAT--
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
* * *
26414819 ATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA-T-CACACAT--
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
*
26414866 ATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTAT
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
26414906 CACACAGATA
Statistics
Matches: 968, Mismatches: 16, Indels: 17
0.97 0.02 0.02
Matches are distributed among these distances:
47 216 0.22
48 1 0.00
49 16 0.02
50 4 0.00
51 723 0.75
52 3 0.00
53 5 0.01
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (51 bp):
ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
Found at i:26418427 original size:40 final size:40
Alignment explanation
Indices: 26418380--26418538 Score: 185
Period size: 40 Copynumber: 4.0 Consensus size: 40
26418370 CGAATACACG
* * *
26418380 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATA
* * * *
26418420 ACACCAGCACGAATGCTCTTCAGGG-TTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTC-GGGACTTAGCCCGGACATA
* * * *
26418460 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATA
* *
26418500 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACAT
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACAT
26418539 CATTCAAATA
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 2 0.02
40 95 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATA
Found at i:26418880 original size:29 final size:29
Alignment explanation
Indices: 26418841--26418919 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26418831 CTTAATAATC
*
26418841 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26418871 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26418900 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26418920 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26418962 original size:43 final size:43
Alignment explanation
Indices: 26418901--26419003 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
26418891 TGCATTTCAA
*
26418901 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
26418944 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
*
26418987 GCTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
26419004 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
Found at i:26419242 original size:43 final size:43
Alignment explanation
Indices: 26419194--26419281 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
26419184 ATAGTCATAA
26419194 CACTCTTTCAAAATTGCATCACTTATACCCTTATAATTCAATC
1 CACTCTTTCAAAATTGCATCACTTATACCCTTATAATTCAATC
26419237 CACTCTTTCAAAATTGCATCACTTATACCCTTATAATTCAATC
1 CACTCTTTCAAAATTGCATCACTTATACCCTTATAATTCAATC
26419280 CA
1 CA
26419282 AATCGAAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.33, C:0.28, G:0.02, T:0.36
Consensus pattern (43 bp):
CACTCTTTCAAAATTGCATCACTTATACCCTTATAATTCAATC
Found at i:26429268 original size:43 final size:43
Alignment explanation
Indices: 26429204--26429321 Score: 193
Period size: 43 Copynumber: 2.7 Consensus size: 43
26429194 CCGATATAAG
26429204 TTCGGTTTAATCT-ATTGGCACTAAGTGTGCGATACAATTATAGC
1 TTCGG-TTAAT-TAATTGGCACTAAGTGTGCGATACAATTATAGC
*
26429248 TTCGGTTAATTAATTGGCACTAAGTGTGGGATACAATTATAGC
1 TTCGGTTAATTAATTGGCACTAAGTGTGCGATACAATTATAGC
*
26429291 TTCGGTTAATTAATTAGCACTAAGTGTGCGA
1 TTCGGTTAATTAATTGGCACTAAGTGTGCGA
26429322 GTTTATTGAA
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
42 1 0.01
43 64 0.91
44 5 0.07
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (43 bp):
TTCGGTTAATTAATTGGCACTAAGTGTGCGATACAATTATAGC
Found at i:26443462 original size:40 final size:40
Alignment explanation
Indices: 26443417--26443652 Score: 192
Period size: 40 Copynumber: 5.9 Consensus size: 40
26443407 CGAATACACG
* * * *
26443417 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
26443457 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
26443497 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
26443537 TCACTAGCATGAATGCTCTTCGGGACTTAGCCTGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * * *
26443577 GTAATTCA-CACCAATGC-CTTCGGGTCTTAGTCCGGATATGG
1 -TCA-CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
* * *
26443618 TCGCTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
26443653 CATCATTCAA
Statistics
Matches: 154, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
40 141 0.92
41 12 0.08
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:26443997 original size:29 final size:29
Alignment explanation
Indices: 26443958--26444036 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
26443948 CTTAATAATC
*
26443958 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26443988 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
26444017 AGCCCACACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26444037 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26444084 original size:43 final size:43
Alignment explanation
Indices: 26444018--26444120 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
26444008 TGCATTTCAA
*
26444018 GCCCACACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26444061 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26444104 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
26444121 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:26446015 original size:37 final size:37
Alignment explanation
Indices: 26445972--26446050 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26445962 TTATTACGAA
* * * *
26445972 GTCTTACCCGGACATAATCTCCACACGAAGTTATTGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26446009 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26446046 GTCTT
1 GTCTT
26446051 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26446314 original size:47 final size:47
Alignment explanation
Indices: 26446169--26446488 Score: 317
Period size: 47 Copynumber: 7.1 Consensus size: 47
26446159 CCCTTCGGGA
* * * * * *
26446169 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCAATCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCC-ATTAGGC
* *
26446216 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26446262 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * ** *
26446309 CTTATCACACATAT--AC---C-C--TCA--A-AT-GCCCTTCGGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
26446344 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
26446391 CTTATCACATATATACACCTCCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26446438 CTTATCTCATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26446485 CTTA
1 CTTA
26446489 CTATCATTTC
Statistics
Matches: 223, Mismatches: 36, Indels: 28
0.78 0.13 0.10
Matches are distributed among these distances:
35 18 0.08
36 2 0.01
37 3 0.01
39 3 0.01
40 1 0.00
41 2 0.01
42 1 0.00
43 2 0.01
45 6 0.03
46 39 0.17
47 146 0.65
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26446396 original size:129 final size:128
Alignment explanation
Indices: 26446220--26446453 Score: 369
Period size: 129 Copynumber: 1.8 Consensus size: 128
26446210 ATCAGCCCTG
* * *
26446220 TCACATATATACACTTTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 TCACATATATACACTTTCACATCCACACATCGGCCATTAGGCCTTATCACATATATACACCTCCA
*
26446285 CATTCATCACATCGGCCATTAGGCCTTATCACACATATACCCTCAAATGCCCTTCGGGACTTA
66 CATCCATCACATCGGCCATTAGGCCTTATCACACATATACCCTCAAATGCCCTTCGGGACTTA
* * *
26446348 TCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACCTCC
1 TCACATATATACACTTTCACATCCA-CACATCGGCCATTAGGCCTTATCACATATATACACCTCC
* * *
26446413 ACATCCATCACATCGGCCATTAGGTCTTATCTCATATATAC
65 ACATCCATCACATCGGCCATTAGGCCTTATCACACATATAC
26446454 ACTTTCACAT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
128 23 0.24
129 72 0.76
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.31
Consensus pattern (128 bp):
TCACATATATACACTTTCACATCCACACATCGGCCATTAGGCCTTATCACATATATACACCTCCA
CATCCATCACATCGGCCATTAGGCCTTATCACACATATACCCTCAAATGCCCTTCGGGACTTA
Found at i:26454172 original size:13 final size:13
Alignment explanation
Indices: 26454154--26454178 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26454144 AACGAAGTAG
26454154 AACACGGCCATGA
1 AACACGGCCATGA
26454167 AACACGGCCATG
1 AACACGGCCATG
26454179 TACATCGACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.32, G:0.24, T:0.08
Consensus pattern (13 bp):
AACACGGCCATGA
Found at i:26454638 original size:29 final size:30
Alignment explanation
Indices: 26454605--26454668 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
26454595 TTTTACACAA
*
26454605 TTATTACATT-ATTATTAATATTA-TTATTC
1 TTATTACATTCATTA-TAATACTATTTATTC
*
26454634 TTATT-CATTCATTATATTACTATTTATTC
1 TTATTACATTCATTATAATACTATTTATTC
26454663 TTATTA
1 TTATTA
26454669 TTTTTCTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (30 bp):
TTATTACATTCATTATAATACTATTTATTC
Found at i:26454670 original size:19 final size:20
Alignment explanation
Indices: 26454624--26454670 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
26454614 TATTATTAAT
26454624 ATTATTATTCTTATTCATTC
1 ATTATTATTCTTATTCATTC
*
26454644 ATTA-TATTAC-TATTTATTC
1 ATTATTATT-CTTATTCATTC
26454663 -TTATTATT
1 ATTATTATT
26454671 TTTCTATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 16 0.67
20 5 0.21
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTATTATTCTTATTCATTC
Found at i:26456260 original size:25 final size:25
Alignment explanation
Indices: 26456187--26456270 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
26456177 GAGTTTTTAT
26456187 TTTTTATTTGTATTTTCACTTT--TA-
1 TTTTTATTT-TATTTTCA-TTTAATAC
* *
26456211 TCTTTA-TTTATCTTC-TTTAAGTAC
1 TTTTTATTTTATTTTCATTTAA-TAC
26456235 TTTTTATTTTATTTTCATTTAATAC
1 TTTTTATTTTATTTTCATTTAATAC
*
26456260 TATTTCATTTT
1 T-TTTTATTTT
26456271 TAGGTTTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
20 3 0.06
22 6 0.12
23 4 0.08
24 10 0.21
25 12 0.25
26 13 0.27
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTTATTTTATTTTCATTTAATAC
Found at i:26466887 original size:34 final size:34
Alignment explanation
Indices: 26466844--26466912 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
26466834 ATTGCTTAGC
26466844 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
1 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
26466878 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
1 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
26466912 T
1 T
26466913 GACTTGTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.57
Consensus pattern (34 bp):
TATGTTTTATTTTTAATAGATAGCCTATGTTATT
Found at i:26477441 original size:6 final size:6
Alignment explanation
Indices: 26477418--26477484 Score: 68
Period size: 6 Copynumber: 11.5 Consensus size: 6
26477408 AATCCTCCTT
* * *
26477418 TTTTTA TTATTTA CTTTTA TTTTTA -TTTTA -TTTTA -TTTTC TTTTGA
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
26477464 TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTT
26477485 CAATTTTATT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
5 14 0.27
6 33 0.63
7 5 0.10
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:26477443 original size:16 final size:16
Alignment explanation
Indices: 26477415--26477504 Score: 64
Period size: 17 Copynumber: 5.6 Consensus size: 16
26477405 TTGAATCCTC
26477415 CTTTT-TTTATTATTTA
1 CTTTTATTT-TTATTTA
26477431 CTTTTATTTTTATTTTA
1 CTTTTATTTTTA-TTTA
26477448 -TTTTATTTTCT-TTTGA
1 CTTTTATTTT-TATTT-A
* *
26477464 TTTTTATTTTTATTTT
1 CTTTTATTTTTATTTA
* *
26477480 CATTTCAATTTTA-TTA
1 C-TTTTATTTTTATTTA
26477496 -TTTTATTTT
1 CTTTTATTTT
26477505 GAAAGACATA
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
14 7 0.12
15 3 0.05
16 21 0.35
17 29 0.48
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.76
Consensus pattern (16 bp):
CTTTTATTTTTATTTA
Found at i:26477446 original size:5 final size:5
Alignment explanation
Indices: 26477427--26477504 Score: 61
Period size: 5 Copynumber: 14.6 Consensus size: 5
26477417 TTTTTTATTA
*
26477427 TTTACT TTTATT TTTAT TTTAT TTTAT TTTCT TTTGATT TTTATT TTTAT
1 TTTA-T TTTA-T TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTA-T TTTAT
*
26477477 TTTCAT TTCAAT TTTA- -TTAT TTTAT TTT
1 TTT-AT TT-TAT TTTAT TTTAT TTTAT TTT
26477505 GAAAGACATA
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
3 3 0.05
5 30 0.49
6 24 0.39
7 4 0.07
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:26477448 original size:21 final size:20
Alignment explanation
Indices: 26477424--26477504 Score: 65
Period size: 23 Copynumber: 3.8 Consensus size: 20
26477414 CCTTTTTTTA
26477424 TTATTTACTTTTATTTTTATT
1 TTATTTA-TTTTATTTTTATT
* *
26477445 TTATTTTATTTTCTTTTGATTT
1 TTA-TTTATTTTATTTTTA-TT
**
26477467 TTATTTTTATTTTCATTTCAATT
1 TTA--TTTATTTT-ATTTTTATT
26477490 TTA-TTATTTTATTTT
1 TTATTTATTTTATTTT
26477505 GAAAGACATA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
19 4 0.08
20 7 0.14
21 12 0.24
22 9 0.18
23 14 0.28
24 4 0.08
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.75
Consensus pattern (20 bp):
TTATTTATTTTATTTTTATT
Done.