Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 77 of 235
Found at i:26477821 original size:23 final size:23
Alignment explanation
Indices: 26477778--26477821 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
26477768 CATAAAAATA
*
26477778 ATTAAATGTTAAATTCTATGTTT
1 ATTAAATGTTAAATGCTATGTTT
*
26477801 ATTATATGTGTAAATGC-ATGT
1 ATTAAATGT-TAAATGCTATGT
26477822 GTGAAAGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (23 bp):
ATTAAATGTTAAATGCTATGTTT
Found at i:26481588 original size:40 final size:40
Alignment explanation
Indices: 26481529--26481728 Score: 319
Period size: 40 Copynumber: 5.0 Consensus size: 40
26481519 GTATGGGAAA
* *
26481529 TGGTGTTATATCCGGGCTAAGTCCCGAAGAGCACTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
*
26481569 TGGTGTTACATCCGAGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
* *
26481609 TGGTGTTACATCCAGGCTAAGTCCCGAAGAGCATTCATGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
*
26481649 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTTGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
* * *
26481689 TGGTGTTACATCCGGGCTATGTCCTGAAGGGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
26481729 CGATGATGTG
Statistics
Matches: 147, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 147 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (40 bp):
TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
Found at i:26481943 original size:28 final size:28
Alignment explanation
Indices: 26481910--26482008 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
26481900 ATGAATATAT
26481910 GCACTATGTGTGCGAATTCTTTAACTGA
1 GCACTATGTGTGCGAATTCTTTAACTGA
** * *
26481938 GCACTATGTGTGCGAGA-TCGGTCAGTG-
1 GCACTATGTGTGCGA-ATTCTTTAACTGA
* *
26481965 GACACTGTGTGTGCGAATTCTTTAACCGA
1 G-CACTATGTGTGCGAATTCTTTAACTGA
26481994 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
26482009 GACCGGTCAG
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
27 2 0.04
28 52 0.93
29 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACTGA
Found at i:26481977 original size:56 final size:56
Alignment explanation
Indices: 26481911--26482035 Score: 214
Period size: 56 Copynumber: 2.2 Consensus size: 56
26481901 TGAATATATG
* * *
26481911 CACTATGTGTGCGAATTCTTTAACTGAGCACTATGTGTGCGAGATCGGTCAGTGGA
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGA
*
26481967 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGG
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGA
26482023 CACTGTGTGTGCG
1 CACTGTGTGTGCG
26482036 GATTTCGTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 65 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (56 bp):
CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGA
Found at i:26482025 original size:28 final size:28
Alignment explanation
Indices: 26481938--26482035 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 28
26481928 CTTTAACTGA
26481938 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * ** * ** *
26481966 ACACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
*
26481994 GCACTATGTGTGCGAGACCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
*
26482022 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
26482036 GATTTCGTTT
Statistics
Matches: 50, Mismatches: 18, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
27 1 0.02
28 48 0.96
29 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.35, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGG
Found at i:26484465 original size:27 final size:27
Alignment explanation
Indices: 26484435--26484612 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26484425 ATATTGAGTC
* * * *
26484435 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26484462 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26484489 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26484517 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26484544 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26484571 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26484598 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26484613 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26484574 original size:82 final size:81
Alignment explanation
Indices: 26484456--26484611 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26484446 TGCTATATAA
* *
26484456 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26484521 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26484538 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26484602 CACTTAGTGC
65 CACTTAGTGC
26484612 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26503934 original size:27 final size:27
Alignment explanation
Indices: 26503904--26504036 Score: 176
Period size: 27 Copynumber: 4.9 Consensus size: 27
26503894 ATAAATACTT
* * *
26503904 CACATAGGGGCAAAACAATCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
26503931 CACATAAGTGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
26503958 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
26503985 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
26504012 CACATAGGGGTAAAATAGTCATTTT
1 CACATAAGGGCAAAACAGTCATTTT
26504037 GTCAATTTAG
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:26504027 original size:54 final size:54
Alignment explanation
Indices: 26503904--26504036 Score: 194
Period size: 54 Copynumber: 2.5 Consensus size: 54
26503894 ATAAATACTT
* * * *
26503904 CACATAGGGGCAAAACAATCATCTTACCACATAAGTGCAAAACAGTCATTTTAC
1 CACATAGGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTAC
* * *
26503958 CACATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAATAGTCATTTTAC
1 CACATAGGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTAC
*
26504012 CACATAGGGGTAAAATAGTCATTTT
1 CACATAGGGGCAAAATAGTCATTTT
26504037 GTCAATTTAG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (54 bp):
CACATAGGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTAC
Found at i:26509739 original size:29 final size:29
Alignment explanation
Indices: 26509673--26509729 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
26509663 GATTCAAAGA
*
26509673 TGGGTTTATGGATATGAAGTTTATGTAGT
1 TGGGTTTATGGATATAAAGTTTATGTAGT
*
26509702 TGGGTTTATGGATATAAAGTTTTTGTAG
1 TGGGTTTATGGATATAAAGTTTATGTAG
26509730 GTTTGGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.46
Consensus pattern (29 bp):
TGGGTTTATGGATATAAAGTTTATGTAGT
Found at i:26510011 original size:56 final size:56
Alignment explanation
Indices: 26509925--26510040 Score: 223
Period size: 56 Copynumber: 2.1 Consensus size: 56
26509915 CACATTAAGA
26509925 GTAGTGATAAGTTCAGTTTTCAACAAAGAAAATGGATGACACAACTAGAACACTAG
1 GTAGTGATAAGTTCAGTTTTCAACAAAGAAAATGGATGACACAACTAGAACACTAG
*
26509981 GTAGTGATAAGTTCGGTTTTCAACAAAGAAAATGGATGACACAACTAGAACACTAG
1 GTAGTGATAAGTTCAGTTTTCAACAAAGAAAATGGATGACACAACTAGAACACTAG
26510037 GTAG
1 GTAG
26510041 CCAACAAATC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (56 bp):
GTAGTGATAAGTTCAGTTTTCAACAAAGAAAATGGATGACACAACTAGAACACTAG
Found at i:26513503 original size:5 final size:6
Alignment explanation
Indices: 26513486--26513511 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26513476 TTGATCAAAC
26513486 TCTTTT TCTTTT TCTTTT TCTTTT TC
1 TCTTTT TCTTTT TCTTTT TCTTTT TC
26513512 AATGTCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:26513664 original size:16 final size:14
Alignment explanation
Indices: 26513636--26513672 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
26513626 TTTGATCCCT
26513636 TTTTTCTTTTCATC
1 TTTTTCTTTTCATC
26513650 TTTTTCTTTTC-TC
1 TTTTTCTTTTCATC
*
26513663 ATTTTCTTTT
1 TTTTTCTTTT
26513673 TACAAGAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTCTTTTCATC
Found at i:26536662 original size:54 final size:52
Alignment explanation
Indices: 26536579--26536712 Score: 160
Period size: 54 Copynumber: 2.5 Consensus size: 52
26536569 AAATACTTAG
* * *
26536579 TTTAATTAATTAAGTTGCTGGAGTAAATTACTCATCTTAGTTAACTGAGTTCAT
1 TTTAGTTAATT-AGTTGCTGGAATAAATTACTCATCTTAGTTAACTAAGTTC-T
* * *
26536633 TTTAGTTAATTAGGTTGCTGGAATAAATTATTCATGTTAGTTAATTAAGTTCT
1 TTTAGTTAATTA-GTTGCTGGAATAAATTACTCATCTTAGTTAACTAAGTTCT
*
26536686 TCTTAGTTAATTTAGTTGCTAGAATAA
1 T-TTAGTTAA-TTAGTTGCTGGAATAA
26536713 TTTAATGATG
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.91
55 3 0.04
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (52 bp):
TTTAGTTAATTAGTTGCTGGAATAAATTACTCATCTTAGTTAACTAAGTTCT
Found at i:26538829 original size:27 final size:26
Alignment explanation
Indices: 26538799--26538886 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
26538789 TGAAAACTGG
*
26538799 GGGTATTTCAGTAATTTCACAAATCGA
1 GGGTATTTTAGTAATTT-ACAAATCGA
*
26538826 GGGTGTTTTAGTAATTTACAAATC-A
1 GGGTATTTTAGTAATTTACAAATCGA
*
26538851 GGGGTATTTTAGTAATTTTACAAATTGA
1 -GGGTATTTTAGTAA-TTTACAAATCGA
26538879 GGGTATTT
1 GGGTATTT
26538887 ACGACCCAAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
25 1 0.02
26 20 0.37
27 32 0.59
28 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTACAAATCGA
Found at i:26538887 original size:26 final size:26
Alignment explanation
Indices: 26538772--26538887 Score: 94
Period size: 27 Copynumber: 4.3 Consensus size: 26
26538762 TACCCTACAG
* * *
26538772 GGGTATCTTGGTAATTTTGA-AAACTGG
1 GGGTAT-TTAGTAATTTT-ACAAATTGA
* *
26538799 GGGTATTTCAGTAATTTCACAAATCGA
1 GGGTATTT-AGTAATTTTACAAATTGA
* *
26538826 GGGTGTTTTAGTAA-TTTACAAA-TCA
1 GGGT-ATTTAGTAATTTTACAAATTGA
26538851 GGGGTATTTTAGTAATTTTACAAATTGA
1 -GGGTA-TTTAGTAATTTTACAAATTGA
26538879 GGGTATTTA
1 GGGTATTTA
26538888 CGACCCAACC
Statistics
Matches: 71, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
25 1 0.01
26 26 0.37
27 39 0.55
28 5 0.07
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTACAAATTGA
Found at i:26542564 original size:29 final size:29
Alignment explanation
Indices: 26542531--26542587 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
26542521 ATAACCAAAC
*
26542531 CTACAAAAACTTTATATCCATAAACCCAA
1 CTACAAAAACTTCATATCCATAAACCCAA
*
26542560 CTACATAAACTTCATATCCATAAACCCA
1 CTACAAAAACTTCATATCCATAAACCCA
26542588 TCTTTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.25
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAA
Found at i:26548233 original size:27 final size:27
Alignment explanation
Indices: 26548200--26548332 Score: 185
Period size: 27 Copynumber: 4.9 Consensus size: 27
26548190 CTAAATTGAC
* *
26548200 AAAATGACTATTTTACCCCTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
*
26548227 AAAATGACTATTTTGCCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
26548254 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* *
26548281 AAAATGACTGTTTTGCACTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* * * *
26548308 AAGATGATTGTTTTGCCCCTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
26548333 AAGTATTTAT
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATGTGGT
Found at i:26561481 original size:28 final size:27
Alignment explanation
Indices: 26561424--26561520 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
26561414 TAAATTGTGC
*
26561424 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
26561451 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGAATATGT
* *
26561479 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
26561506 AGCACTCAGTGTGCG
1 AGCACTAAGTGTGCG
26561521 GACTTAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATATGT
Found at i:26561585 original size:28 final size:27
Alignment explanation
Indices: 26561544--26561619 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
26561534 TTCTTGAATC
*
26561544 ATTATGGA-CACTAAGTGTGCGAGTATG
1 ATTATGTAGCACTAAGTGTGCGAGT-TG
26561571 ATTATGTAGCACTAAGTGTGCGAGTTG
1 ATTATGTAGCACTAAGTGTGCGAGTTG
* *
26561598 ATTATATAGCACTCAGTGTGCG
1 ATTATGTAGCACTAAGTGTGCG
26561620 GACTTAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 29 0.64
28 16 0.36
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (27 bp):
ATTATGTAGCACTAAGTGTGCGAGTTG
Found at i:26561587 original size:99 final size:99
Alignment explanation
Indices: 26561453--26561664 Score: 406
Period size: 99 Copynumber: 2.1 Consensus size: 99
26561443 GAATATGTAG
*
26561453 CACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTCAGTGT
1 CACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTCAGTGT
26561518 GCGGACTTAATAAATATTCTTGAATCATTATGGA
66 GCGGACTTAATAAATATTCTTGAATCATTATGGA
*
26561552 CACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTCAGTGT
1 CACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTCAGTGT
26561617 GCGGACTTAATAAATATTCTTGAATCATTATGGA
66 GCGGACTTAATAAATATTCTTGAATCATTATGGA
26561651 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
26561665 CACTATTGAG
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 111 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.33
Consensus pattern (99 bp):
CACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTCAGTGT
GCGGACTTAATAAATATTCTTGAATCATTATGGA
Found at i:26563356 original size:79 final size:81
Alignment explanation
Indices: 26563234--26563416 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
26563224 GCTAGGGATG
* *
26563234 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGGT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAA-GTCCCGAAGGCAT
*
26563297 TTGTGCGAGTTACTA-A
65 TTGTGCAAGTTACTATA
* * * **
26563313 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAT
26563376 TTGTGCAAGTTACTATA
65 TTGTGCAAGTTACTATA
* *
26563393 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26563417 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.64
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCATT
TGTGCAAGTTACTATA
Found at i:26563432 original size:40 final size:40
Alignment explanation
Indices: 26563235--26563418 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
26563225 CTAGGGATGT
* * * *
26563235 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
26563275 CCGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
26563315 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
26563353 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26563394 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26563419 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 36 0.29
40 78 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26563440 original size:79 final size:79
Alignment explanation
Indices: 26563287--26563451 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
26563277 GGACTAAGGT
* * **
26563287 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
26563352 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26563366 CCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
26563429 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26563445 CCGAAGG
1 CCGAAGG
26563452 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26565893 original size:24 final size:24
Alignment explanation
Indices: 26565798--26565893 Score: 88
Period size: 24 Copynumber: 4.0 Consensus size: 24
26565788 CATTAAGGAG
* * *
26565798 TACTGATTGCAGCTCGTGAAAGCT
1 TACTAATTGCAGCTCGTTAGAGCT
* *
26565822 TACCAATTGTAGCTC-TTGAGAGCT
1 TACTAATTGCAGCTCGTT-AGAGCT
*
26565846 TACTAATTCTCAGCTCG-TAGGAGCT
1 TACTAATT-GCAGCTCGTTA-GAGCT
*
26565871 TACTGATTGCAGCTCGTTAGAGC
1 TACTAATTGCAGCTCGTTAGAGC
26565894 ATACCGAATC
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.02
24 36 0.63
25 20 0.35
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (24 bp):
TACTAATTGCAGCTCGTTAGAGCT
Found at i:26569991 original size:47 final size:46
Alignment explanation
Indices: 26569918--26570185 Score: 190
Period size: 47 Copynumber: 5.7 Consensus size: 46
26569908 ATTTGTTTGT
*
26569918 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACA-TATGA
* * * *
26569964 GAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGG-CATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCA--CATATGA
* * ** *
26570012 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGGGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-ATATG-A
* * * * * *
26570059 -AGCCAGTGTAAGACATGTTTAGGACAT-GCATTGGCTATGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCA-CATATGA
* * * * * *
26570104 TAGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATAT--
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC--CACATATGA
26570151 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATC
26570186 AGCACCTTAC
Statistics
Matches: 181, Mismatches: 28, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 69 0.38
47 77 0.43
48 28 0.15
49 5 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACATATGA
Found at i:26570138 original size:94 final size:94
Alignment explanation
Indices: 26569918--26570185 Score: 271
Period size: 94 Copynumber: 2.9 Consensus size: 94
26569908 ATTTGTTTGT
** *
26569918 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGGACGAGAGCCAGTGTAAGACCATG
* *
26569983 TCTGGGACATGGTATCGGCATTGAGACGA
66 TCTAGGACATGGCATCGGCATTGAGACGA
* *
26570012 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGGACGTA-AGCCAGTGTAAGA-CAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGGACG-AGAGCCAGTGTAAGACCAT
* * *
26570075 GTTTAGGACAT-GCATTGGC-TATGAGATGA
65 GTCTAGGACATGGCATCGGCAT-TGAGACGA
* * * *** *
26570104 TAG-TCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGA-GA-TATGAGCCAGTGTAAGAC
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAGGACGA-GAGCCAGTGTAAGAC
*
26570166 CATGTCTGGGACATGGCATC
62 CATGTCTAGGACATGGCATC
26570186 AGCACCTTAC
Statistics
Matches: 145, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
91 3 0.02
92 24 0.17
93 40 0.28
94 73 0.50
95 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGGACGAGAGCCAGTGTAAGACCATG
TCTAGGACATGGCATCGGCATTGAGACGA
Found at i:26570175 original size:140 final size:141
Alignment explanation
Indices: 26569923--26570185 Score: 354
Period size: 140 Copynumber: 1.9 Consensus size: 141
26569913 TTTGTGAGCT
* * *
26569923 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
* * *
26569988 GACATGGTATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
26570052 GGACGTAAGCC
131 GGACGTAAGCC
* * * * * *
26570063 AGTGTAAGACATGTTTAGGACATGCATTGGCTATGA-GATGATAGTCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCA-CATGATGAGAGCCAGTGTAAGACCATGTCTA
*
26570127 GGACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
65 GGACATGGCATCGACATTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATC
26570186 AGCACCTTAC
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 80 0.75
141 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
GGACGTAAGCC
Found at i:26570731 original size:11 final size:11
Alignment explanation
Indices: 26570715--26570739 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26570705 ATATGATATT
26570715 TTATTATTTTA
1 TTATTATTTTA
26570726 TTATTATTTTA
1 TTATTATTTTA
26570737 TTA
1 TTA
26570740 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:26575500 original size:17 final size:17
Alignment explanation
Indices: 26575478--26575516 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
26575468 GTCTCAGCCG
*
26575478 TGTGTGGCACACGGCCA
1 TGTGTGACACACGGCCA
26575495 TGTGTGACACACGGCCA
1 TGTGTGACACACGGCCA
26575512 TGTGT
1 TGTGT
26575517 CCCCTGTAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (17 bp):
TGTGTGACACACGGCCA
Found at i:26579678 original size:97 final size:98
Alignment explanation
Indices: 26579555--26579735 Score: 247
Period size: 98 Copynumber: 1.9 Consensus size: 98
26579545 CCACATTATA
*
26579555 AGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATACAAGCCAGTGTAAGAC
1 AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGAGATATACAAGCCAGTGTAAGAC
*
26579619 CTATCTGGGACATGGCATCGACACCGATAGATG
66 CTATCTGAGACATGGCATCGACACCGATAGATG
* * * * ** *
26579652 AGAGCTAGTGTAAGACTTGTCTGGGACATGGCATTGACCTCGATATATGTAAGTCAGTGTAAGAC
1 AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGAGATATACAAGCCAGTGTAAGAC
* * *
26579717 TTGTCTTAGACATGGCATC
66 CTATCTGAGACATGGCATC
26579736 AAATTAGATG
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
97 27 0.38
98 44 0.62
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (98 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGAGATATACAAGCCAGTGTAAGAC
CTATCTGAGACATGGCATCGACACCGATAGATG
Found at i:26579696 original size:49 final size:49
Alignment explanation
Indices: 26579555--26579735 Score: 199
Period size: 49 Copynumber: 3.7 Consensus size: 49
26579545 CCACATTATA
* * *
26579555 AGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-
1 AGAGCCAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATATATG
* * * *
26579602 ACAAGCCAGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATG
1 A-GAGCCAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCGATATATG
* *
26579652 AGAGCTAGTGTAAGACTTGTCTGGGACATGGCATTGACCTCGATATATG
1 AGAGCCAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATATATG
* **
26579701 TA-AGTCAGTGTAAGACTTGTCTTAGACATGGCATC
1 -AGAGCCAGTGTAAGACTTGTCTGGGACATGGCATC
26579736 AAATTAGATG
Statistics
Matches: 111, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 26 0.23
49 81 0.73
50 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATATATG
Found at i:26579762 original size:33 final size:33
Alignment explanation
Indices: 26579719--26579781 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
26579709 TGTAAGACTT
26579719 GTCTTAGACATGGCATCAAATTAGATGTGTAAG
1 GTCTTAGACATGGCATCAAATTAGATGTGTAAG
* * *
26579752 GTCTTGGACATGGCATCGACTTAGATGTGT
1 GTCTTAGACATGGCATCAAATTAGATGTGT
26579782 GAGCCAGTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (33 bp):
GTCTTAGACATGGCATCAAATTAGATGTGTAAG
Found at i:26583046 original size:46 final size:46
Alignment explanation
Indices: 26582996--26583168 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
26582986 TGGTTGAGCA
26582996 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26583042 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26583087 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26583135 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26583169 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26583152 original size:93 final size:93
Alignment explanation
Indices: 26582993--26583163 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
26582983 GGATGGTTGA
* *
26582993 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26583058 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26583086 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26583151 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26583164 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26586601 original size:92 final size:92
Alignment explanation
Indices: 26586432--26587239 Score: 811
Period size: 92 Copynumber: 8.8 Consensus size: 92
26586422 AAACTAGATT
* * * *
26586432 TTTAGGTTTTAATTTTGGTAAAATTAGATTATAGATTTAAATAGGATTTGATTTCAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
26586497 AAAATTATATTTTTAGGTTCTAATAGG
66 AAAATTATATTTTTAGGTTCTAATAGG
* * * * *
26586524 TTTATATTGTAATTTTGGTAAAATTAGTTTATAGGTTTAAATAGGATCTGATTTTAAGTTCTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
*
26586589 AAAATTAGATTTTTAGGTTCTAATAGG
66 AAAATTATATTTTTAGGTTCTAATAGG
* * * ** * *
26586616 CTTAGATCATAATTTTGGAAAAATTAGACAATAGGATTAAATAGGATTTGGTTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
** *
26586681 AGTATCATATTTTTAGGTTCTAATAGG
66 AAAATTATATTTTTAGGTTCTAATAGG
* *
26586708 TTTGGATTATAATTTTGGTAAAATTAGACTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
*
26586773 AAAATTATATTTTTAGGTTTTAATAGG
66 AAAATTATATTTTTAGGTTCTAATAGG
* * * * * * *
26586800 CTTAGATCATAATTTTGGAAAAAATAGATAATAGGTTTAAAAAGGATTTGATTTTAAGTTGTAAT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
**
26586865 AGTATTATATTTTTAGGTTCTAATA-G
66 AAAATTATATTTTTAGGTTCTAATAGG
*
26586891 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAA-AGGGTTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
* *
26586955 AAAATTAGATTTTTAGCTT-TAATAGG
66 AAAATTATATTTTTAGGTTCTAATAGG
* * * * * ** * ** *
26586981 TTTAGATTTTAATTTTGGAAAAAAATATATTAGAATTTTAATTACAATTTGATTTTAAGTTTTAG
1 TTTAGATTATAATTTTGG-TAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAG
* ** * ** *
26587046 TAAAATTAGATTGATAGGTTTTAGCA-A
65 TAAAATTATATTTTTAGGTTCTAATAGG
* * *** * * * * * ** * ** *
26587073 ATTAAATTATAAGTTTAAATGAGATTCGGTTGTAATTTTTAATAAAAGTTAGATTTTAAGTTGTA
1 TTTAGATTATAA-TTTTGGTAAAATTAGATTATAGGTTTAAATAGGA-TTTGATTTTAAGTTGTA
* *
26587138 GTAAAATTAGATTTTT-GGCTTTTAATAGG
64 GTAAAATTATATTTTTAGG-TTCTAATAGG
* * * * *
26587167 TTTAGATTTTAATTTTGG-AAAATAATATATTATA-ATTATAAATAGAATTTGATTTTAAGTTTT
1 TTTAGATTATAATTTTGGTAAAAT--TAGATTATAGGTT-TAAATAGGATTTGATTTTAAGTTGT
*
26587230 AGTCAAATTA
63 AGTAAAATTA
26587240 GATTGATAGA
Statistics
Matches: 585, Mismatches: 120, Indels: 21
0.81 0.17 0.03
Matches are distributed among these distances:
89 5 0.01
90 54 0.09
91 53 0.09
92 383 0.65
93 69 0.12
94 21 0.04
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (92 bp):
TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
AAAATTATATTTTTAGGTTCTAATAGG
Found at i:26587057 original size:23 final size:23
Alignment explanation
Indices: 26586939--26587152 Score: 92
Period size: 23 Copynumber: 9.3 Consensus size: 23
26586929 AAAAGGGTTT
*
26586939 GATTTTAAGTTGTAGTAAAATTA
1 GATTTTAAGTTTTAGTAAAATTA
* * * ***
26586962 GATTTTTAGCTTTAATAGGTTTA
1 GATTTTAAGTTTTAGTAAAATTA
* **
26586985 GATTTTAA-TTTT-GGAAAAAAA
1 GATTTTAAGTTTTAGTAAAATTA
* * * * * *
26587006 TATATTAGAATTTTAATTACAATTT
1 GATTTTA-AGTTTT-AGTAAAATTA
26587031 GATTTTAAGTTTTAGTAAAATTA
1 GATTTTAAGTTTTAGTAAAATTA
* * *
26587054 GATTGATAGGTTTTAG-CAAATTA
1 GATT-TTAAGTTTTAGTAAAATTA
* * * * * * *
26587077 AATTATAAGTTTAAATGAGATTC
1 GATTTTAAGTTTTAGTAAAATTA
* * * *
26587100 GGTTGTAATTTTTAATAAAAGTTA
1 GATTTTAAGTTTTAGTAAAA-TTA
*
26587124 GATTTTAAGTTGTAGTAAAATTA
1 GATTTTAAGTTTTAGTAAAATTA
26587147 GATTTT
1 GATTTT
26587153 TGGCTTTTAA
Statistics
Matches: 131, Mismatches: 53, Indels: 14
0.66 0.27 0.07
Matches are distributed among these distances:
21 7 0.05
22 12 0.09
23 73 0.56
24 31 0.24
25 8 0.06
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (23 bp):
GATTTTAAGTTTTAGTAAAATTA
Found at i:26587187 original size:186 final size:185
Alignment explanation
Indices: 26586939--26587305 Score: 581
Period size: 186 Copynumber: 2.0 Consensus size: 185
26586929 AAAAGGGTTT
26586939 GATTTTAAGTTGTAGTAAAATTAGATTTTTAGCTTTAATAGGTTTAGATTTTAATTTTGGAAAAA
1 GATTTTAAGTTGTAGTAAAATTAGATTTTTAGCTTTAATAGGTTTAGATTTTAATTTTGGAAAAA
* * *
26587004 AATATATTAGAATTTTAATTACAATTTGATTTTAAGTTTTAGTAAAATTAGATTGATAGGTTTTA
66 AATATATTAGAATTATAAATACAATTTGATTTTAAGTTTTAGTAAAATTAGATTGATAGATTTTA
* * *
26587069 GCAAATTAAATTATAAGTTTAAATGAGATTCGGTTGTAATTTTTAATAAAAGTTA
131 ACAAATTAAATTATAAATTTAAATAAGATTCGGTTGTAATTTTTAATAAAAGTTA
*
26587124 GATTTTAAGTTGTAGTAAAATTAGATTTTTGGCTTTTAATAGGTTTAGATTTTAATTTTGGAAAA
1 GATTTTAAGTTGTAGTAAAATTAGATTTTTAGC-TTTAATAGGTTTAGATTTTAATTTTGGAAAA
* * * *
26587189 TAATATATTATAATTATAAATAGAATTTGATTTTAAGTTTTAGTCAAATTAGATTGATAGATTTT
65 AAATATATTAGAATTATAAATACAATTTGATTTTAAGTTTTAGTAAAATTAGATTGATAGATTTT
* * ** *
26587254 AATAAGTTAGGTTATAAATTTAAATAAGATTCGTTTGTAATTTTTAATAAAA
130 AACAAATTAAATTATAAATTTAAATAAGATTCGGTTGTAATTTTTAATAAAA
26587306 AAATAGATTT
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
185 32 0.19
186 133 0.81
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (185 bp):
GATTTTAAGTTGTAGTAAAATTAGATTTTTAGCTTTAATAGGTTTAGATTTTAATTTTGGAAAAA
AATATATTAGAATTATAAATACAATTTGATTTTAAGTTTTAGTAAAATTAGATTGATAGATTTTA
ACAAATTAAATTATAAATTTAAATAAGATTCGGTTGTAATTTTTAATAAAAGTTA
Found at i:26589576 original size:54 final size:54
Alignment explanation
Indices: 26589489--26589593 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
26589479 GCCATGTGAG
* ** *
26589489 CCAAAATGGATTGTTACACGATTTAGCGTATGGCCTACGACAAAGCCGTGTAAT
1 CCAAAATAGATTGTTACACGATTTAGCACATGGCATACGACAAAGCCGTGTAAT
* * *
26589543 CCAAAATAGATTGTTACACGATTTAGTACATGGCATGCGACACAGCCGTGT
1 CCAAAATAGATTGTTACACGATTTAGCACATGGCATACGACAAAGCCGTGT
26589594 GGCCCTTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (54 bp):
CCAAAATAGATTGTTACACGATTTAGCACATGGCATACGACAAAGCCGTGTAAT
Found at i:26591926 original size:45 final size:45
Alignment explanation
Indices: 26591869--26592035 Score: 244
Period size: 45 Copynumber: 3.7 Consensus size: 45
26591859 ACCAGAAACT
* * *
26591869 AGCAAGATCATGACTAAAAGACATTATGGCATCACGATTCTAACG
1 AGCAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTAACG
*
26591914 AGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTAACG
1 AGCAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTAACG
* *
26591959 AGCAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCA
1 AGCAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTAACG
* * * *
26592004 AGCAAGACAATAACTGAAAGATGCTATGGCAT
1 AGCAAGACCATGACTGAAAGACGTTATGGCAT
26592036 TACAAATCAA
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 111 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (45 bp):
AGCAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTAACG
Found at i:26592049 original size:90 final size:90
Alignment explanation
Indices: 26591864--26592059 Score: 239
Period size: 90 Copynumber: 2.2 Consensus size: 90
26591854 ACCATACCAG
* * * * * *
26591864 AAACTAGCAAGATCATGACTAAAAGACATTATGGCATCACGATTCTAACGAGTAAGACCATGACT
1 AAACGAGCAAGACCATGACTAAAAGACATTATGGCATCACGATTCTAACAAGCAAGACAATAACT
* * *
26591929 GAAAGACGTTATGGCATCACGATTC
66 GAAAGACGCTATGGCATCACAAATC
* * * *
26591954 TAACGAGCAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCAAGCAAGACAATAACT
1 AAACGAGCAAGACCATGACTAAAAGACATTATGGCATCACGATTCTAACAAGCAAGACAATAACT
* *
26592019 GAAAGATGCTATGGCATTACAAATC
66 GAAAGACGCTATGGCATCACAAATC
**
26592044 AAACGAATAAGACCAT
1 AAACGAGCAAGACCAT
26592060 CGTTGAGAAA
Statistics
Matches: 88, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 88 1.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (90 bp):
AAACGAGCAAGACCATGACTAAAAGACATTATGGCATCACGATTCTAACAAGCAAGACAATAACT
GAAAGACGCTATGGCATCACAAATC
Found at i:26597552 original size:71 final size:71
Alignment explanation
Indices: 26597413--26597553 Score: 156
Period size: 71 Copynumber: 2.0 Consensus size: 71
26597403 TTTGTGTAGG
** * * * * *
26597413 GCACAACAATTGTTGGTTTATTTGACCAGCATTGGGTGAAAAACATTGTCGATTTATCCGACCAG
1 GCACAACAATTGTCAGTTTATCTAACCAACATTGGATGAAAAACATTGTCGATTTAACCGACCAG
26597478 TGCAGA
66 TGCAGA
* * * * * * *
26597484 GCACAACAATTGTCAGTTTATCTAACCAACGTTGGATGCAAAACTTTGTTGGTTTAACTGACCTG
1 GCACAACAATTGTCAGTTTATCTAACCAACATTGGATGAAAAACATTGTCGATTTAACCGACCAG
26597549 TGCAG
66 TGCAG
26597554 GGAACAACTT
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (71 bp):
GCACAACAATTGTCAGTTTATCTAACCAACATTGGATGAAAAACATTGTCGATTTAACCGACCAG
TGCAGA
Found at i:26603095 original size:41 final size:41
Alignment explanation
Indices: 26602951--26603150 Score: 235
Period size: 41 Copynumber: 4.9 Consensus size: 41
26602941 ATACTTGATA
* * * * * *
26602951 TCTCGCACACTAAGTACCGTACATAGCCGAAGCTATTTCAAA
1 TCTCGCACACTAAGTGCCATATATAGGCGAAGCTATCTC-AT
* *
26602993 T-T-GCACACTAAGTGCCATACATA-GCTGAAGCTATCACATT
1 TCTCGCACACTAAGTGCCATATATAGGC-GAAGCTATCTCA-T
*
26603033 TCTCGCACACTAAGTGCCATATGTAGGCGAAGCTATCTCAT
1 TCTCGCACACTAAGTGCCATATATAGGCGAAGCTATCTCAT
* * *
26603074 TCTTGCACGCTAAGTGCCATATGTAGGCGAAGCTATCTCAT
1 TCTCGCACACTAAGTGCCATATATAGGCGAAGCTATCTCAT
*
26603115 TCTCGCACACTAAGTGCCATATATAGCCGAAGCTAT
1 TCTCGCACACTAAGTGCCATATATAGGCGAAGCTAT
26603151 GTCGAATCGC
Statistics
Matches: 138, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.01
40 29 0.21
41 74 0.54
42 31 0.22
43 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (41 bp):
TCTCGCACACTAAGTGCCATATATAGGCGAAGCTATCTCAT
Found at i:26603118 original size:82 final size:82
Alignment explanation
Indices: 26602951--26603169 Score: 271
Period size: 82 Copynumber: 2.7 Consensus size: 82
26602941 ATACTTGATA
* * * *
26602951 TCTCGCACACTAAGTACCGTACATAGCCGAAGCTATTTCAAATTGCACACTAAGTGCCATACATA
1 TCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATTGCACACTAAGTGCCATACATA
26603016 GCTGAAGCTATCACATT
66 GCTGAAGCTATCACATT
* * ** * **
26603033 TCTCGCACACTAAGTGCCATATGTAGGCGAAGCTATCTCATTCTTGCACGCTAAGTGCCATATGT
1 TCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA-AATTGCACACTAAGTGCCATACAT
*
26603098 AGGC-GAAGCTATCTCA-T
65 A-GCTGAAGCTATCACATT
* * *
26603115 TCTCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCGCACACTAAGT
1 TCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATTGCACACTAAGT
26603170 TCCACAAGTA
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
81 11 0.10
82 71 0.62
83 31 0.27
84 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (82 bp):
TCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATTGCACACTAAGTGCCATACATA
GCTGAAGCTATCACATT
Found at i:26612961 original size:66 final size:67
Alignment explanation
Indices: 26612832--26612961 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
26612822 GGGATGTATC
*
26612832 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
26612897 AGGACA
62 AGGACA
* *
26612903 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
26612962 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:26619075 original size:27 final size:27
Alignment explanation
Indices: 26619058--26619181 Score: 140
Period size: 27 Copynumber: 4.6 Consensus size: 27
26619048 ATATTAAGTC
26619058 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
26619085 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
26619113 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
26619140 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
26619167 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26619182 GCACAATTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 66 0.72
28 26 0.28
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:26619143 original size:55 final size:54
Alignment explanation
Indices: 26619058--26619181 Score: 185
Period size: 55 Copynumber: 2.3 Consensus size: 54
26619048 ATATTAAGTC
* *
26619058 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
26619113 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
26619167 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26619182 GCACAATTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 18 0.29
55 45 0.71
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:26621431 original size:30 final size:31
Alignment explanation
Indices: 26621374--26621431 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
26621364 CTAACTCAAA
**
26621374 CTTTAGCAAAATTATAATTTTGTCCCTAAAC
1 CTTTAGCAAAATTATAATTTTCCCCCTAAAC
* *
26621405 CTTT-GCAGAATTATTATTTTCCCCCTA
1 CTTTAGCAAAATTATAATTTTCCCCCTA
26621432 GGCTCGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (31 bp):
CTTTAGCAAAATTATAATTTTCCCCCTAAAC
Found at i:26624826 original size:20 final size:20
Alignment explanation
Indices: 26624801--26624851 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
26624791 ATCAGGGCCA
*
26624801 CACGCCCGTGTGGATAGGGG
1 CACGCCCGTGTGGATAGGCG
* *
26624821 CACGCCCATGTGGGTAGGCG
1 CACGCCCGTGTGGATAGGCG
26624841 CACGCCCGTGT
1 CACGCCCGTGT
26624852 CCCTAACCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.14, C:0.31, G:0.39, T:0.16
Consensus pattern (20 bp):
CACGCCCGTGTGGATAGGCG
Found at i:26629770 original size:48 final size:48
Alignment explanation
Indices: 26629605--26629882 Score: 304
Period size: 48 Copynumber: 5.7 Consensus size: 48
26629595 ACATAGTAAG
* * * * *
26629605 TGCCAATGCCATATCCCAGATATGGTGTCACATGGGATCACACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT--CTCATATCGA
*
26629655 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCTCATATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTC--ATATCGA
* * *
26629705 TGCCAATGCCATGTCCCAGACATGGTCTTACATTGGATCTCGTATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGA
* * * * * *
26629753 TGCCGATGCCATGTCCCAGACATGGTCTTATATGGGACCTCGTCTCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGA
* * * * * * *
26629801 TGCCGATGCCATATCCCAAATATGGTCTTATACGGGGTCTCATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGA
* *
26629849 TGCCGATGCCATGTCCCAGACATGGTCTTGCATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
26629883 AGACCTTATC
Statistics
Matches: 194, Mismatches: 32, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
48 115 0.59
50 79 0.41
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGA
Found at i:26633546 original size:31 final size:31
Alignment explanation
Indices: 26633511--26633572 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
26633501 TGGTAGAGAG
*
26633511 AAGAAATCGAATGTTGTTAGACATGGTATGT
1 AAGAAATCGAACGTTGTTAGACATGGTATGT
*
26633542 AAGAAATTGAACGTTGTTAGACATGGTATGT
1 AAGAAATCGAACGTTGTTAGACATGGTATGT
26633573 TCAATGTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (31 bp):
AAGAAATCGAACGTTGTTAGACATGGTATGT
Found at i:26635043 original size:34 final size:34
Alignment explanation
Indices: 26635005--26635069 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
26634995 TTTTAGAGAA
*
26635005 AATCACGGATAATATTAAAATTTTATATTCTCTT
1 AATCACGGAAAATATTAAAATTTTATATTCTCTT
26635039 AATCACGGAAAATATTAAAATTTTATATTCT
1 AATCACGGAAAATATTAAAATTTTATATTCT
26635070 TTCCAAAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (34 bp):
AATCACGGAAAATATTAAAATTTTATATTCTCTT
Found at i:26637075 original size:27 final size:27
Alignment explanation
Indices: 26637045--26637148 Score: 154
Period size: 27 Copynumber: 3.9 Consensus size: 27
26637035 CATATATCAC
* * * *
26637045 ATAAGGGCAAAACAATCATCTTACCAT
1 ATAAGGGAAAAATAGTCATTTTACCAT
*
26637072 ATAAGGGCAAAATAGTCATTTTACCAT
1 ATAAGGGAAAAATAGTCATTTTACCAT
*
26637099 ATAAGGGAAAAATAGTCATTTTACCAC
1 ATAAGGGAAAAATAGTCATTTTACCAT
26637126 ATAAGGGAAAAATAGTCATTTTA
1 ATAAGGGAAAAATAGTCATTTTA
26637149 TCAATATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.27
Consensus pattern (27 bp):
ATAAGGGAAAAATAGTCATTTTACCAT
Found at i:26639917 original size:27 final size:27
Alignment explanation
Indices: 26639887--26640064 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26639877 ATATTGAGTC
* * * *
26639887 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26639914 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26639941 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26639969 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26639996 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26640023 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26640050 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26640065 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26640026 original size:82 final size:81
Alignment explanation
Indices: 26639908--26640063 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26639898 TGCTATATAA
* *
26639908 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26639973 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26639990 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26640054 CACTTAGTGC
65 CACTTAGTGC
26640064 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26647979 original size:27 final size:27
Alignment explanation
Indices: 26647949--26648126 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
26647939 ATATTGAGCC
* *
26647949 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
26647976 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26648003 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
26648031 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26648058 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26648085 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
26648112 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26648127 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26648061 original size:55 final size:54
Alignment explanation
Indices: 26647949--26648126 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
26647939 ATATTGAGCC
* * * * *
26647949 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
26648003 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
26648058 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
26648112 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26648127 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:26650364 original size:9 final size:9
Alignment explanation
Indices: 26650350--26650374 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26650340 ATGGGCCTTG
26650350 ATGGGCCAA
1 ATGGGCCAA
26650359 ATGGGCCAA
1 ATGGGCCAA
26650368 ATGGGCC
1 ATGGGCC
26650375 CCGTGGGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.28, C:0.24, G:0.36, T:0.12
Consensus pattern (9 bp):
ATGGGCCAA
Found at i:26654144 original size:26 final size:26
Alignment explanation
Indices: 26654113--26654198 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 26
26654103 AGAAAAATAC
26654113 AGTCATACAT-CACATAAGGGCAAAAT
1 AGTCAT-CATCCACATAAGGGCAAAAT
* *
26654139 AGTCATCTTGCCATATAAGGGCAAAAT
1 AGTCATCAT-CCACATAAGGGCAAAAT
* ** * *
26654166 AGTTATTTTACCACATTAGGGCAAAAC
1 AGTCATCAT-CCACATAAGGGCAAAAT
26654193 AGTCAT
1 AGTCAT
26654199 TTGATCAATC
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
25 2 0.04
26 6 0.12
27 41 0.84
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (26 bp):
AGTCATCATCCACATAAGGGCAAAAT
Found at i:26654200 original size:27 final size:27
Alignment explanation
Indices: 26654123--26654200 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
26654113 AGTCATACAT
* *
26654123 CACATAAGGGCAAAATAGTCATCTTGC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
26654150 CATATAAGGGCAAAATAGTTATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
26654177 CACATTAGGGCAAAACAGTCATTT
1 CACATAAGGGCAAAATAGTCATTT
26654201 GATCAATCTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:26670702 original size:28 final size:27
Alignment explanation
Indices: 26670510--26670934 Score: 724
Period size: 27 Copynumber: 15.6 Consensus size: 27
26670500 TAAATTGTGC
*
26670510 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26670537 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26670564 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26670591 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26670618 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26670645 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26670672 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
26670700 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26670727 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26670754 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26670782 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26670810 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26670838 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* * *
26670866 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
26670893 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26670920 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26670935 GACTTAATAT
Statistics
Matches: 386, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
27 250 0.65
28 136 0.35
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:26679042 original size:27 final size:27
Alignment explanation
Indices: 26679011--26679188 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26679001 TAAATTGTAC
26679011 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26679038 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26679064 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26679092 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26679120 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26679147 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26679174 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26679189 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26679125 original size:82 final size:81
Alignment explanation
Indices: 26679012--26679167 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26679002 AAATTGTACA
* *
26679012 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26679076 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26679093 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26679158 TGCGAGTTGA
65 TGCGAATTGA
26679168 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26679179 original size:82 final size:81
Alignment explanation
Indices: 26679008--26679188 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26678998 GATTAAATTG
* *
26679008 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26679073 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26679089 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26679153 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26679171 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26679189 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26684219 original size:56 final size:56
Alignment explanation
Indices: 26684133--26684242 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 56
26684123 GTCGTCTGAG
26684133 TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACAGATCTTA
1 TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACAGATCTTA
* *
26684189 TTAGAAAAGATTCATAGTGTATTTCATATATCAATGCTTAGACGATACAGATCT
1 TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACAGATCT
26684243 GATCCTTCAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (56 bp):
TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACAGATCTTA
Found at i:26691713 original size:56 final size:56
Alignment explanation
Indices: 26691627--26691739 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
26691617 GTCGTCTAAG
*
26691627 TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACATATCTGA
1 TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACAGATCTGA
* *
26691683 TTAGAAAAGATTCATAGTGTATTTCATATATCAATGCTTAGACGATACAGATCTGA
1 TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACAGATCTGA
26691739 T
1 T
26691740 CCTTCACATA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (56 bp):
TTAGAAAAGATTCATAATGTATTTCATATATCAATACTTAGACGATACAGATCTGA
Found at i:26695198 original size:22 final size:24
Alignment explanation
Indices: 26695164--26695207 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
26695154 ATTGATTTGG
*
26695164 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGATGATGAAATGGATGAGT
*
26695187 TTTGTGAT-ATGAAATGGATGA
1 TTTGAGATGATGAAATGGATGA
26695208 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.30, T:0.39
Consensus pattern (24 bp):
TTTGAGATGATGAAATGGATGAGT
Found at i:26705140 original size:6 final size:6
Alignment explanation
Indices: 26705108--26705209 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
26705098 AACCAAAATA
* * *
26705108 AGAATC AAAATC AGATTC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
26705156 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
26705205 AGAAT
1 AGAAT
26705210 GTGAATGCAA
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
5 6 0.08
6 65 0.84
7 4 0.05
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:26705142 original size:30 final size:29
Alignment explanation
Indices: 26705108--26705209 Score: 141
Period size: 30 Copynumber: 3.4 Consensus size: 29
26705098 AACCAAAATA
*
26705108 AGAATCAAAATCAGATTCAGTAACAGAATC
1 AGAATCAGAATCAGATT-AGTAACAGAATC
*
26705138 AGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATC-AGATTAGTAACAGAATC
*
26705168 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAG-ATTA-GTAACAGAATC
26705199 AGAATCAGAAT
1 AGAATCAGAAT
26705210 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
29 1 0.02
30 39 0.60
31 25 0.38
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (29 bp):
AGAATCAGAATCAGATTAGTAACAGAATC
Found at i:26705613 original size:22 final size:22
Alignment explanation
Indices: 26705565--26705623 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
26705555 GTAAATACGT
26705565 TTGGCACAAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
26705587 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
26705609 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
26705624 TAATAACGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:26705790 original size:27 final size:26
Alignment explanation
Indices: 26705711--26705793 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
26705701 TCGATCGGTC
* * *
26705711 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
26705737 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
26705764 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
26705791 AAC
1 AAC
26705794 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:26706187 original size:27 final size:27
Alignment explanation
Indices: 26705992--26706179 Score: 259
Period size: 27 Copynumber: 7.0 Consensus size: 27
26705982 GGGGCAAAAT
* * * *
26705992 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
26706019 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26706046 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26706073 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
26706100 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26706127 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
26706154 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
26706180 TAGGAATTTC
Statistics
Matches: 141, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:26706226 original size:27 final size:27
Alignment explanation
Indices: 26706196--26706665 Score: 355
Period size: 27 Copynumber: 17.7 Consensus size: 27
26706186 TTTCACAATT
26706196 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* * * *
26706223 GAGGGTAAAA-CGATAATTTTGTAAACC
1 GAGGGTAAAATAG-TAATTCTATAAATC
* *
26706250 AAGGGTAAACTAGTAATTCTATAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* * *
26706277 GAGGGTAAAA-CGATAATTTTACAAATC
1 GAGGGTAAAATAG-TAATTCTATAAATC
* *
26706304 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* *
26706331 AAGGGT-AAATAGTAATTCTATAAATT
1 GAGGGTAAAATAGTAATTCTATAAATC
**
26706357 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* * *
26706384 GAGGGTAAAACAGTAATTATGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* *** * * *
26706411 GGGGGTACTTTGGTAATTTTACAAGAT-
1 GAGGGTAAAATAGTAATTCTATAA-ATC
26706438 GAGGG-----TA-T--TTC-AGNTAAATC
1 GAGGGTAAAATAGTAATTCTA--TAAATC
*
26706458 GAGGGTAAAATAGTAATTCTGTAAA-C
1 GAGGGTAAAATAGTAATTCTATAAATC
* *
26706484 TGAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAATAGTAATTCTATAAATC
* * *
26706512 AAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAATAGTAATTCTATAAATC
*
26706538 TAAGGGTAAAAT-GATAATTCTATAAATC
1 -GAGGGTAAAATAG-TAATTCTATAAATC
** * *
26706566 GAGGGT-AAACGGTAATTTTAAAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* *
26706592 GAGGGTAAAA-CGATAATTCTGTAAATC
1 GAGGGTAAAATAG-TAATTCTATAAATC
* * *
26706619 GAGGGTAAAATGGTAATTTTACAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
*
26706646 GAGGGTAAAACAGTAATTCT
1 GAGGGTAAAATAGTAATTCT
26706666 NNNNNNNNNN
Statistics
Matches: 354, Mismatches: 62, Indels: 54
0.75 0.13 0.11
Matches are distributed among these distances:
18 1 0.00
19 4 0.01
20 7 0.02
21 1 0.00
22 1 0.00
25 2 0.01
26 50 0.14
27 278 0.79
28 10 0.03
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAATAGTAATTCTATAAATC
Found at i:26706256 original size:80 final size:79
Alignment explanation
Indices: 26706192--26706628 Score: 313
Period size: 80 Copynumber: 5.5 Consensus size: 79
26706182 GGAATTTCAC
*
26706192 AATTGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC-GATAATTTTGTAAACCAAGGGT
1 AATTGAGGGTAAAA-AGTAATTCTATAAATCGAGGGTAAAACAG-TAATTATGTAAACCAAGGGT
26706256 AAACTAGTAATTCTATA
64 AAA-TAGTAATTCTATA
* * * * * *
26706273 AATCGAGGGTAAAACGATAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
1 AATTGAGGGTAAAAAG-TAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAACCAAGGGTA
26706338 AATAGTAATTCTATA
65 AATAGTAATTCTATA
* * **
26706353 AATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCGGGGGTA
1 AATTGAGGGTAAAA-AGTAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAACCAAGGGTA
** * * *
26706418 CTTTGGTAATTTTACA
65 -AATAGTAATTCTATA
* * **
26706434 AGA-TGAGGGT----A-T--TTC-AGNTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGG
1 A-ATTGAGGGTAAAAAGTAATTCTA--TAAATCGAGGGTAAAACAGTAATTATGTAAACCAAGGG
* *
26706490 TAAAATGGTAATTCTGTA
63 T-AAATAGTAATTCTATA
** * * * * * * * *
26706508 AATCAAGGGTAAAATGGTAATTCTGTAAA-CTAAGGGTAAAA-TGATAATTCTATAAATCGAGGG
1 AATTGAGGGTAAAA-AGTAATTCTATAAATC-GAGGGTAAAACAG-TAATTATGTAAACCAAGGG
** * *
26706571 TAAACGGTAATTTTAAA
63 TAAATAGTAATTCTATA
* * *
26706588 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
1 AATTGAGGGTAAAAAG-TAATTCTATAAATCGAGGGTAAAA
26706629 TGGTAATTTT
Statistics
Matches: 289, Mismatches: 45, Indels: 45
0.76 0.12 0.12
Matches are distributed among these distances:
72 1 0.00
73 4 0.01
74 50 0.17
75 2 0.01
79 1 0.00
80 119 0.41
81 107 0.37
82 5 0.02
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (79 bp):
AATTGAGGGTAAAAAGTAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAACCAAGGGTAA
ATAGTAATTCTATA
Found at i:26706269 original size:54 final size:54
Alignment explanation
Indices: 26706196--26706665 Score: 423
Period size: 54 Copynumber: 8.9 Consensus size: 54
26706186 TTTCACAATT
* * *
26706196 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
* * * * **
26706250 AAGGGTAAACTAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTACAAATC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
** * * * *
26706304 GAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAATA-G-TAATTCTATAAATT
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAA-ACGATAATTCTGTAAATC
* *
26706357 GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTATGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATC
* *** * * *
26706411 GGGGGTACTTTGGTAATTTTACAAGAT-GAGGGT------AT--TTCAGNTAAATC
1 GAGGGTAAAATGGTAATTCTATAA-ATCGAGGGTAAAACGATAATTCTG-TAAATC
* * * *
26706458 GAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTGTAAATC
* * * * *
26706512 AAGGGTAAAATGGTAATTCTGTAAA-CTAAGGGTAAAATGATAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTGTAAATC
* * *
26706566 GAGGGT-AAACGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
* *
26706619 GAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAAC-AGTAATTCT
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCT
26706666 NNNNNNNNNN
Statistics
Matches: 344, Mismatches: 53, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
46 4 0.01
47 28 0.08
48 1 0.00
49 1 0.00
52 1 0.00
53 90 0.26
54 212 0.62
55 7 0.02
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (54 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
Found at i:26706519 original size:208 final size:207
Alignment explanation
Indices: 26706251--26706652 Score: 537
Period size: 208 Copynumber: 1.9 Consensus size: 207
26706241 TTGTAAACCA
* * *
26706251 AGGGTAAACTAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTACAAATCGAGGGTAAAACA
1 AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTACAAATCAAGGGTAAAACA
*
26706316 GTAATTCTGTAAA-TCAAGGGT-AAAT-AGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTA
66 GTAATTCTGTAAACT-AAGGGTAAAATGA-TAATTCTATAAATCGAGGGT-AAACGGTAATTCTA
* * ***
26706378 TAAATCGAGGGTAAAAC-AGTAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAAGAT-GAG
128 AAAATCGAGGGTAAAACGA-TAATTATGTAAATCGAGGGTAAAATGGTAATTTTACAA-ATCGAG
26706441 GGTATTTCAGNTAAATCG
191 GGTATTTCAG-TAAATCG
* * * ** *
26706459 AGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAAT
1 AGGGTAAAATAGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTACAAATCAAGGGTAAAAC
* *
26706523 GGTAATTCTGTAAACTAAGGGTAAAATGATAATTCTATAAATCGAGGGTAAACGGTAATTTTAAA
65 AGTAATTCTGTAAACTAAGGGTAAAATGATAATTCTATAAATCGAGGGTAAACGGTAATTCTAAA
*
26706588 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTA
130 AATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTA
26706653 AAACAGTAAT
Statistics
Matches: 170, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
207 3 0.02
208 141 0.83
209 25 0.15
210 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (207 bp):
AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTACAAATCAAGGGTAAAACA
GTAATTCTGTAAACTAAGGGTAAAATGATAATTCTATAAATCGAGGGTAAACGGTAATTCTAAAA
ATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAT
TTCAGTAAATCG
Found at i:26706544 original size:101 final size:100
Alignment explanation
Indices: 26706351--26706642 Score: 250
Period size: 101 Copynumber: 2.8 Consensus size: 100
26706341 AGTAATTCTA
* * **
26706351 TAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCGGGGG
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGG
*** *
26706416 TACTTTGGTAATTTTACAAGATGAGGGTATTTCAG
66 TAAAATGGTAATTTTACAAGATAAGGGTATTTCAG
* * ** *
26706451 NTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATCAAG
1 -TAAATCGAGGGTAAAACAGTAATTCTATAAATC-GAGGGTAAAACAGTAATTATGTAAATCAAG
* * * *
26706515 GGTAAAATGGTAATTCTGTAAACTAAGGGTAAAATGATAATTCTA-
64 GGTAAAATGGTAATT-T-T--AC-AA--G-ATAAGGGTATTTC-AG
* * * * *
26706560 TAAATCGAGGGT-AAACGGTAATTTTAAAAATCGAGGGTAAAAC-GATAATTCTGTAAATCGAGG
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAG-TAATTATGTAAATCAAGG
26706623 GTAAAATGGTAATTTTACAA
65 GTAAAATGGTAATTTTACAA
26706643 ATCGAGGGTA
Statistics
Matches: 155, Mismatches: 24, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
100 1 0.01
101 64 0.41
102 3 0.02
103 3 0.02
105 3 0.02
106 4 0.03
107 54 0.35
108 14 0.09
109 8 0.05
110 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (100 bp):
TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGG
TAAAATGGTAATTTTACAAGATAAGGGTATTTCAG
Found at i:26706629 original size:80 final size:81
Alignment explanation
Indices: 26706452--26706665 Score: 256
Period size: 80 Copynumber: 2.7 Consensus size: 81
26706442 GTATTTCAGN
* * **
26706452 TAAATCGAGGGTAAAAT-AGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATCAAG
1 TAAATCGAGGGTAAAATGA-TAATTCTATAAATC-GAGGGTAAAACGGTAATTCTAAAAATCAAG
* *
26706515 GGTAAAATGGTAATTCTG
64 GGTAAAACGATAATTCTG
* * *
26706533 TAAA-CTAAGGGTAAAATGATAATTCTATAAATCGAGGGT-AAACGGTAATTTTAAAAATCGAGG
1 TAAATC-GAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTAAAAATCAAGG
26706596 GTAAAACGATAATTCTG
65 GTAAAACGATAATTCTG
* * * *
26706613 TAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT
1 TAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCT
26706666 NNNNNNNNNN
Statistics
Matches: 113, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
80 68 0.60
81 43 0.38
82 2 0.02
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (81 bp):
TAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTAAAAATCAAGGG
TAAAACGATAATTCTG
Found at i:26712326 original size:18 final size:18
Alignment explanation
Indices: 26712289--26712327 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26712279 TTGGAAATCA
*
26712289 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
26712307 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
26712325 AAA
1 AAA
26712328 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:26713655 original size:18 final size:18
Alignment explanation
Indices: 26713632--26713667 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26713622 TACCTCAAAA
26713632 TAGAATGAATGGGAAGTT
1 TAGAATGAATGGGAAGTT
*
26713650 TAGAATGAATGGTAAGTT
1 TAGAATGAATGGGAAGTT
26713668 AAGTACCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.31
Consensus pattern (18 bp):
TAGAATGAATGGGAAGTT
Found at i:26717833 original size:40 final size:40
Alignment explanation
Indices: 26717778--26717999 Score: 376
Period size: 40 Copynumber: 5.6 Consensus size: 40
26717768 TATTCGAATG
26717778 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
26717818 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26717858 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26717898 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26717938 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
26717978 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26718000 TACTTGGGTT
Statistics
Matches: 173, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.08
40 156 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:26718424 original size:212 final size:211
Alignment explanation
Indices: 26718058--26718480 Score: 801
Period size: 212 Copynumber: 2.0 Consensus size: 211
26718048 ACGCTCATAA
*
26718058 AATCCAAACGATAAGGTATGTTTCGTATATGCATCGGAAAAGTTAATTCCTTTTTAGATAGTATG
1 AATCCAAACGATAAGGTATGTTTCGTATATGCATCGAAAAAGTTAATTCCTTTTTAGATAGTATG
26718123 CGCTCTATTGATTAACAACTTCCGGCCTTTAGTTAGGTTTGATCCCCTGTGTATGAATATACTGG
66 CGCTCTATTGATTAACAACTTCCGGCCTTTAGTTAGGTTTGATCCCCTGTGTATGAATATACTGG
26718188 TTGAGGTGTGAAGTAAGTATGATTTTGGGAATATGCGTATATGCAACTATTCATTTAGTCATATG
131 TTGAGGTGTGAAGTAAGTATGATTTTGGGAATATGCGTATATGCAACTATTCATTTAGTCATATG
26718253 AACGATATACTTTAGT
196 AACGATATACTTTAGT
*
26718269 AATCCAAACGATAAGGTATGTTTCGTATATGCATCGAAAAAGTTAATTTCTTTTTTAGATAGTAT
1 AATCCAAACGATAAGGTATGTTTCGTATATGCATCGAAAAAGTTAA-TTCCTTTTTAGATAGTAT
* *
26718334 GCGCTCTATTGATTAACAACTTCCGGCCTTTAGTTAGGTTTGATTCGCTGTGTATGAATATACTG
65 GCGCTCTATTGATTAACAACTTCCGGCCTTTAGTTAGGTTTGATCCCCTGTGTATGAATATACTG
26718399 GTTGAGGTGTGAAGTAAGTATGATTTTGGGAATATGCGTATATGCAACTATTCATTTAGTCATAT
130 GTTGAGGTGTGAAGTAAGTATGATTTTGGGAATATGCGTATATGCAACTATTCATTTAGTCATAT
26718464 GAACGATATACTTTAGT
195 GAACGATATACTTTAGT
26718481 CGTAAATAAT
Statistics
Matches: 207, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
211 45 0.22
212 162 0.78
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (211 bp):
AATCCAAACGATAAGGTATGTTTCGTATATGCATCGAAAAAGTTAATTCCTTTTTAGATAGTATG
CGCTCTATTGATTAACAACTTCCGGCCTTTAGTTAGGTTTGATCCCCTGTGTATGAATATACTGG
TTGAGGTGTGAAGTAAGTATGATTTTGGGAATATGCGTATATGCAACTATTCATTTAGTCATATG
AACGATATACTTTAGT
Found at i:26719892 original size:20 final size:20
Alignment explanation
Indices: 26719863--26719902 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26719853 CCAATTAAGT
* *
26719863 GAACATAAAAATAAAACTAA
1 GAACACAAAAAAAAAACTAA
26719883 GAACACAAAAAAAAAACTAA
1 GAACACAAAAAAAAAACTAA
26719903 ATCTAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.72, C:0.12, G:0.05, T:0.10
Consensus pattern (20 bp):
GAACACAAAAAAAAAACTAA
Found at i:26744734 original size:12 final size:12
Alignment explanation
Indices: 26744717--26744746 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26744707 GGGCACTAGA
*
26744717 CACGCCTATAGG
1 CACGCCAATAGG
26744729 CACGCCAATAGG
1 CACGCCAATAGG
26744741 CACGCC
1 CACGCC
26744747 CGTGTACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.40, G:0.23, T:0.10
Consensus pattern (12 bp):
CACGCCAATAGG
Found at i:26746767 original size:27 final size:27
Alignment explanation
Indices: 26746750--26746873 Score: 140
Period size: 27 Copynumber: 4.6 Consensus size: 27
26746740 ATATTAAGTC
26746750 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
26746777 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
26746805 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
26746832 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
26746859 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26746874 GCACAATTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 66 0.72
28 26 0.28
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:26746835 original size:55 final size:54
Alignment explanation
Indices: 26746750--26746873 Score: 185
Period size: 55 Copynumber: 2.3 Consensus size: 54
26746740 ATATTAAGTC
* *
26746750 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
26746805 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
26746859 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26746874 GCACAATTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 18 0.29
55 45 0.71
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:26757698 original size:46 final size:46
Alignment explanation
Indices: 26757645--26757794 Score: 130
Period size: 46 Copynumber: 3.2 Consensus size: 46
26757635 TCCGAACTCG
*
26757645 TTGAGTTGAGTACGAGTTCACTTATGGATGCGAATGTCTGAGCTCT
1 TTGAGTTGAGTACGAGTTCACTTATGGATGCGAATGTCTGAGCTCA
* * * * *
26757691 TTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAAGCATCTGAGCTCG
1 TTGAGTTGAGTACGAGTTCACTTATGGATGCGAA-T--G--TCTGAGCTCA
* * *
26757738 TTGACTTGAG-ACCGAGTTCACTTATGGATGCGAACGCCTGAGCTCA
1 TTGAGTTGAGTA-CGAGTTCACTTATGGATGCGAATGTCTGAGCTCA
26757784 TTGAGTTGAGT
1 TTGAGTTGAGT
26757795 CCGATTTTGT
Statistics
Matches: 79, Mismatches: 14, Indels: 21
0.69 0.12 0.18
Matches are distributed among these distances:
42 2 0.03
43 5 0.06
45 3 0.04
46 35 0.44
47 25 0.32
48 3 0.04
50 4 0.05
51 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (46 bp):
TTGAGTTGAGTACGAGTTCACTTATGGATGCGAATGTCTGAGCTCA
Found at i:26763456 original size:56 final size:56
Alignment explanation
Indices: 26763349--26763465 Score: 182
Period size: 56 Copynumber: 2.1 Consensus size: 56
26763339 AGACCATCGC
* *
26763349 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAGTATATGATTTTGA
1 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAGTATATGATTCTAA
* *
26763405 TATATGTGTGCGAGTAAGACCACTTTTAATACGTTGGCATC-GATATGTGATTCTAA
1 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAG-TATATGATTCTAA
26763461 TATAT
1 TATAT
26763466 CTGATTACAT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
55 1 0.02
56 55 0.98
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.37
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAGTATATGATTCTAA
Found at i:26767287 original size:43 final size:43
Alignment explanation
Indices: 26767233--26767395 Score: 143
Period size: 43 Copynumber: 3.8 Consensus size: 43
26767223 ATCGAGATGT
* * * * *
26767233 AATTACATGTAAGACCATGTCAGGGACATTGGCAT-TTTATTG
1 AATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
* * *
26767275 AGATTACGTGTAAGACTATGTTTGGGATATTGGCATCGTTAATC
1 A-ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
* * * *
26767319 AATTTCGTGTAAGACCCTGTCTGGGACAATGGCATCGATATAT-
1 AATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-ATC
* * * *
26767362 AATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 AATTACGTGTAAGACCATGTCTGGGACATTGGCAT
26767396 TGTATGAGCT
Statistics
Matches: 97, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 7 0.07
43 83 0.86
44 7 0.07
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
AATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
Found at i:26770444 original size:25 final size:27
Alignment explanation
Indices: 26770407--26770459 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
26770397 TCAAACATGC
26770407 ATTTAGGTCAATTTAAC-CCTAAGGGT
1 ATTTAGGTCAATTTAACTCCTAAGGGT
* *
26770433 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAACTCCTAAGGGT
26770459 A
1 A
26770460 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAAGGGT
Found at i:26771976 original size:26 final size:26
Alignment explanation
Indices: 26771946--26772027 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
26771936 TGAAATGCCC
26771946 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
26771972 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
26771998 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26772024 ATCA
1 ATCA
26772028 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:26774075 original size:28 final size:28
Alignment explanation
Indices: 26774035--26774102 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
26774025 ATGAAAATTT
*
26774035 CACTAAGCGTGCGAGTTTGGTTAACGAG
1 CACTAAGTGTGCGAGTTTGGTTAACGAG
26774063 CACTAAGTGTGCGAGTTTGGTTAACGAG
1 CACTAAGTGTGCGAGTTTGGTTAACGAG
*
26774091 CACTAGGTGTGC
1 CACTAAGTGTGC
26774103 AAAGGAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGGTTAACGAG
Found at i:26776053 original size:48 final size:48
Alignment explanation
Indices: 26775994--26776268 Score: 338
Period size: 48 Copynumber: 5.7 Consensus size: 48
26775984 CCGTGCTATA
* * * **
26775994 TGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGAAATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* * *
26776042 TGTGCCAGTGTATGGCCATGTCTGGGACATGGCATTGGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* * *
26776090 TGTGCCAGTGTAGGGCCATGTCTGGGACATGGCATCGGCGATGCTATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* * * **
26776138 TGTGCCAGTGTAAAACCATGTCTGGGACATAGAATCGATGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* *
26776186 TGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* *
26776234 TG-GATTCA-TGTAAGACCATGTCGGGGACATGGCAT
1 TGTG--CCAGTGTAAGACCATGTCTGGGACATGGCAT
26776269 TGGTACTTTA
Statistics
Matches: 197, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.01
48 193 0.98
49 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
Found at i:26776253 original size:144 final size:144
Alignment explanation
Indices: 26775987--26776268 Score: 372
Period size: 144 Copynumber: 2.0 Consensus size: 144
26775977 CGCGACACCG
* * * *
26775987 TGCTATATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGAAATGATATGTGTGCCAGTG
1 TGCTATATGTGCCAGTGTAAAACCATGTCTAGGACATAGAATCAGAAATGATATGTGTGCCAGTG
* * * * * * *
26776052 TATGGCCATGTCTGGGACATGGCATTGGCGATGATATGTGTGCCAGTGTAGGGCCATGTCTGGGA
66 TAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTGTGCCAGTGTAAGACCATGTCGGGGA
26776117 CATGGCATCGGCGA
131 CATGGCATCGGCGA
* * * *
26776131 TGCTATGTGTGCCAGTGTAAAACCATGTCTGGGACATAGAATC-GATGATGATATGTGTGTCAGT
1 TGCTATATGTGCCAGTGTAAAACCATGTCTAGGACATAGAATCAGA-AATGATATGTGTGCCAGT
*
26776195 GTAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTG-GATTCA-TGTAAGACCATGTCGG
65 GTAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTGTG--CCAGTGTAAGACCATGTCGG
26776258 GGACATGGCAT
128 GGACATGGCAT
26776269 TGGTACTTTA
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
143 3 0.03
144 114 0.96
145 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.27
Consensus pattern (144 bp):
TGCTATATGTGCCAGTGTAAAACCATGTCTAGGACATAGAATCAGAAATGATATGTGTGCCAGTG
TAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTGTGCCAGTGTAAGACCATGTCGGGGA
CATGGCATCGGCGA
Found at i:26780631 original size:54 final size:54
Alignment explanation
Indices: 26780454--26780642 Score: 229
Period size: 55 Copynumber: 3.5 Consensus size: 54
26780444 ATTGCCATTT
* * * *
26780454 CTTGACATGGTCTTACGTGGTATCCTTGCTTTATA-AACTAACCAATGCCATGC
1 CTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTAATCAATGCCATGC
* ** * *
26780507 CTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATGCCATGT
1 CTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTAATCAATGCCATGC
* * *
26780562 CTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATTCCATGC
1 CTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTAATCAATGCCATGC
*
26780616 CTTGGCATGGTCTTACATGATATCCTT
1 CTTGACATGGTCTTACATGATATCCTT
26780643 ATCTTACCAA
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 28 0.24
54 40 0.34
55 44 0.38
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTAATCAATGCCATGC
Found at i:26780883 original size:44 final size:44
Alignment explanation
Indices: 26780832--26780918 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
26780822 GTATCCTTAA
* *
26780832 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* *
26780876 CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
26780919 GAGATATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:26784509 original size:48 final size:48
Alignment explanation
Indices: 26784442--26784620 Score: 259
Period size: 48 Copynumber: 3.7 Consensus size: 48
26784432 CCGTGTTATA
*
26784442 TGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
* * *
26784490 TGTGCCAGTTTAAGGCCATGTCTGGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
* * **
26784538 TGTGCTAGTGTAAGACCAAGTCTAGGACATGGCATCGACGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
* * *
26784586 TGTGCCAGTGTAAGATCATGTCTGGGACATAGCAT
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCAT
26784621 TGGTACTTTA
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.28
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
Found at i:26790600 original size:44 final size:44
Alignment explanation
Indices: 26790552--26790664 Score: 165
Period size: 44 Copynumber: 2.6 Consensus size: 44
26790542 GTTGCAGACG
* *
26790552 GGATTTAGCTCGAGCGAGG-AATCCCAATGACCTTGTTATAAAAA
1 GGATTTAGCCCGAACG-GGTAATCCCAATGACCTTGTTATAAAAA
*
26790596 GGATTTAGCCCGAACGGGTAATCCTAATGACCTTGTTATAAAAA
1 GGATTTAGCCCGAACGGGTAATCCCAATGACCTTGTTATAAAAA
* *
26790640 GGATTTAGCCCGGACGAGTAATCCC
1 GGATTTAGCCCGAACGGGTAATCCC
26790665 TATATAATAC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
43 2 0.03
44 60 0.97
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (44 bp):
GGATTTAGCCCGAACGGGTAATCCCAATGACCTTGTTATAAAAA
Found at i:26793531 original size:33 final size:34
Alignment explanation
Indices: 26793454--26793534 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
26793444 TATGGGCCAT
*
26793454 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
26793488 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
26793521 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
26793535 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:26793539 original size:32 final size:30
Alignment explanation
Indices: 26793454--26793547 Score: 71
Period size: 32 Copynumber: 2.9 Consensus size: 30
26793444 TATGGGCCAT
* *
26793454 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCT-TGGCCCAGTTC
* * *
26793488 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCT-TGGCCCAGT-TC
26793521 ACTGTTATCTGAATGGGCTTAGGCCCA
1 ACTGTTATCTGAATGGGCTT-GGCCCA
26793548 ATGGGCTTGA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
31 1 0.02
32 26 0.54
33 10 0.21
34 9 0.19
35 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (30 bp):
ACTGTTATCTGAATGGGCTTGGCCCAGTTC
Found at i:26802969 original size:296 final size:296
Alignment explanation
Indices: 26802435--26803026 Score: 1184
Period size: 296 Copynumber: 2.0 Consensus size: 296
26802425 GTTGACCAAG
26802435 ACTTGAAAAATAGCCTAAGTGTTGGCCACACGGGTAGAGACACGGCCGTGTGTCTCAGCCGTGTG
1 ACTTGAAAAATAGCCTAAGTGTTGGCCACACGGGTAGAGACACGGCCGTGTGTCTCAGCCGTGTG
26802500 GGGAACACGGCTTTAGCACATGGGCGTGTGACTTGGCTGTGTGACTACATTTCATTGCTGACATC
66 GGGAACACGGCTTTAGCACATGGGCGTGTGACTTGGCTGTGTGACTACATTTCATTGCTGACATC
26802565 ATAAACAAAGAGTTACACGGGCTGAGGACAAGGGCGTGTCCCAAGCCACATGGGCGTGTGTGACC
131 ATAAACAAAGAGTTACACGGGCTGAGGACAAGGGCGTGTCCCAAGCCACATGGGCGTGTGTGACC
26802630 ACAAGGCCTAATCCACACGGGCATGTGACTCTCTAAACATGGAAAATTCCCTAAGTGTTGTAAAA
196 ACAAGGCCTAATCCACACGGGCATGTGACTCTCTAAACATGGAAAATTCCCTAAGTGTTGTAAAA
26802695 TTTTTGGAAGTTCTCGGATTAGTCCCGAACCACCCC
261 TTTTTGGAAGTTCTCGGATTAGTCCCGAACCACCCC
26802731 ACTTGAAAAATAGCCTAAGTGTTGGCCACACGGGTAGAGACACGGCCGTGTGTCTCAGCCGTGTG
1 ACTTGAAAAATAGCCTAAGTGTTGGCCACACGGGTAGAGACACGGCCGTGTGTCTCAGCCGTGTG
26802796 GGGAACACGGCTTTAGCACATGGGCGTGTGACTTGGCTGTGTGACTACATTTCATTGCTGACATC
66 GGGAACACGGCTTTAGCACATGGGCGTGTGACTTGGCTGTGTGACTACATTTCATTGCTGACATC
26802861 ATAAACAAAGAGTTACACGGGCTGAGGACAAGGGCGTGTCCCAAGCCACATGGGCGTGTGTGACC
131 ATAAACAAAGAGTTACACGGGCTGAGGACAAGGGCGTGTCCCAAGCCACATGGGCGTGTGTGACC
26802926 ACAAGGCCTAATCCACACGGGCATGTGACTCTCTAAACATGGAAAATTCCCTAAGTGTTGTAAAA
196 ACAAGGCCTAATCCACACGGGCATGTGACTCTCTAAACATGGAAAATTCCCTAAGTGTTGTAAAA
26802991 TTTTTGGAAGTTCTCGGATTAGTCCCGAACCACCCC
261 TTTTTGGAAGTTCTCGGATTAGTCCCGAACCACCCC
26803027 TGATGTATGT
Statistics
Matches: 296, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
296 296 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (296 bp):
ACTTGAAAAATAGCCTAAGTGTTGGCCACACGGGTAGAGACACGGCCGTGTGTCTCAGCCGTGTG
GGGAACACGGCTTTAGCACATGGGCGTGTGACTTGGCTGTGTGACTACATTTCATTGCTGACATC
ATAAACAAAGAGTTACACGGGCTGAGGACAAGGGCGTGTCCCAAGCCACATGGGCGTGTGTGACC
ACAAGGCCTAATCCACACGGGCATGTGACTCTCTAAACATGGAAAATTCCCTAAGTGTTGTAAAA
TTTTTGGAAGTTCTCGGATTAGTCCCGAACCACCCC
Found at i:26804604 original size:24 final size:24
Alignment explanation
Indices: 26804572--26804619 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
26804562 ATTCCCAGGT
* *
26804572 AAGTCTTTCTTTTGGCACCACGGA
1 AAGTCTTTCTCTCGGCACCACGGA
26804596 AAGTCTTTCTCTCGGCACCACGGA
1 AAGTCTTTCTCTCGGCACCACGGA
26804620 TACCAAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (24 bp):
AAGTCTTTCTCTCGGCACCACGGA
Found at i:26806441 original size:37 final size:37
Alignment explanation
Indices: 26806391--26806469 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26806381 TTATTACGAA
* * *
26806391 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26806428 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26806465 GTCTT
1 GTCTT
26806470 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26806714 original size:47 final size:47
Alignment explanation
Indices: 26806588--26806734 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
26806578 CCCTTCGGGA
* * * * *
26806588 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26806635 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26806684 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26806731 CTTA
1 CTTA
26806735 CTATCATTTC
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
47 48 0.55
49 39 0.45
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26810055 original size:40 final size:40
Alignment explanation
Indices: 26810008--26810162 Score: 159
Period size: 40 Copynumber: 3.9 Consensus size: 40
26809998 CGAATACACG
* * * *
26810008 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * ** *
26810048 ACACCAGCACGAATGCTCTTCGGAACATAGTTCGGAT-TCC
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATAT-A
* * *
26810088 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAAACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * *
26810128 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGG
26810163 TTTTAGTAAC
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.99
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
Found at i:26810189 original size:40 final size:40
Alignment explanation
Indices: 26810139--26810282 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
26810129 CACTAGCATG
*
26810139 AATGCTCTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACC
1 AATGC-CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
* *
26810180 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
* * * * * *
26810219 AATGGCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACC
*
26810259 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
26810283 CATCATTCAA
Statistics
Matches: 85, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.38
40 39 0.46
41 12 0.14
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
Found at i:26810208 original size:39 final size:40
Alignment explanation
Indices: 26810094--26810282 Score: 145
Period size: 40 Copynumber: 4.7 Consensus size: 40
26810084 TTCCTCACTA
* * ** * *
26810094 GCACGAATGCTCTTCGGAACTTAGCCCGGAAACA-TCACTA
1 GCACCAATGC-CTTCGGGACTTAGCCCGGAATTAGTAACTC
** **
26810134 GCATGAATGCTCTTCGGGACTTAGCCCGGTTTTAGTAACTC
1 GCACCAATGC-CTTCGGGACTTAGCCCGGAATTAGTAACTC
26810175 GCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTC
1 GCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
* * * * * *
26810214 GCACAAATGGCTTC-GGATCTTAGTCCGG-ATATGGTCACTTA
1 GCACCAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TC
*
26810255 GCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 GCACCAATGCCTTCGGGACTTAGCCCGGA
26810283 CATCATTCAA
Statistics
Matches: 120, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 34 0.28
40 65 0.54
41 19 0.16
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
Found at i:26810626 original size:29 final size:29
Alignment explanation
Indices: 26810587--26810665 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26810577 CTTAATAATC
*
26810587 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26810617 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26810646 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26810666 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26821036 original size:44 final size:43
Alignment explanation
Indices: 26820971--26821097 Score: 164
Period size: 44 Copynumber: 2.9 Consensus size: 43
26820961 CATGTATCGT
* * *
26820971 ATCCATAATGAACTCAGACCAACTCAATGAGTTCGGATGCTCGC
1 ATCCATAATGAACCCAAACCAACTCAATGAGTTTGGATGC-CGC
*
26821015 ATCCATAATGAACCCAAACCAACTCAATGAGTTTGGATGCCTC
1 ATCCATAATGAACCCAAACCAACTCAATGAGTTTGGATGCCGC
** *
26821058 ATATATATCACGAACCCAAACCAACTCAATGAGTTTGGAT
1 ATCCATA--ATGAACCCAAACCAACTCAATGAGTTTGGAT
26821098 TTCTTAATTC
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
43 7 0.09
44 37 0.50
45 30 0.41
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
ATCCATAATGAACCCAAACCAACTCAATGAGTTTGGATGCCGC
Found at i:26833562 original size:120 final size:119
Alignment explanation
Indices: 26833343--26833588 Score: 388
Period size: 120 Copynumber: 2.1 Consensus size: 119
26833333 GGACTAAGAT
26833343 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* ** *
26833408 AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
26833463 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* * *
26833528 TAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
66 -AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
26833582 CCGAAGG
1 CCGAAGG
26833589 TACGTGATTT
Statistics
Matches: 117, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
119 16 0.14
120 99 0.85
121 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:26833569 original size:40 final size:40
Alignment explanation
Indices: 26833290--26833555 Score: 403
Period size: 40 Copynumber: 6.7 Consensus size: 40
26833280 TCGAATGATG
* * * * *
26833290 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
26833330 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26833370 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26833410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26833450 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26833490 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26833531 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26833556 AACGAGTAGC
Statistics
Matches: 213, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
39 1 0.00
40 202 0.95
41 10 0.05
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26861642 original size:40 final size:40
Alignment explanation
Indices: 26861315--26861630 Score: 524
Period size: 40 Copynumber: 7.9 Consensus size: 40
26861305 NNNNNNNNNN
26861315 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
*
26861355 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCA
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
* * *
26861395 TGCTAGTGATGTATCTGGGCTATGTCCCGAAGAGCATTCT
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
26861435 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
26861475 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
26861515 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
* * **
26861555 TGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCG
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
* * * *
26861595 TGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
26861631 ATCATGCTGG
Statistics
Matches: 259, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 259 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
Found at i:26865754 original size:47 final size:47
Alignment explanation
Indices: 26865693--26867603 Score: 3597
Period size: 47 Copynumber: 40.3 Consensus size: 47
26865683 TGTAAATGTA
26865693 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26865740 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26865787 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26865834 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26865881 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26865928 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26865975 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866022 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866069 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866116 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866163 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866210 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
26866257 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866304 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866351 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866398 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866445 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866492 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866539 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866586 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866633 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866680 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866727 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866776 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866823 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866870 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866917 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26866964 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867011 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867058 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867105 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867152 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867199 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867248 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867297 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867346 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867395 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867444 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26867493 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
26867542 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
26867589 TATAAATGTGATAAG
1 TATATATGTGATAAG
26867604 TCCCGAAGGG
Statistics
Matches: 1848, Mismatches: 12, Indels: 8
0.99 0.01 0.00
Matches are distributed among these distances:
47 1460 0.79
49 388 0.21
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:26869537 original size:26 final size:27
Alignment explanation
Indices: 26869488--26869551 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
26869478 ATTTACTAAA
* *
26869488 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAGGTATCAAAATTACCATT
26869515 ATACCCCTAGGTA-CAAAATTACCATT
1 ATACCCCTAGGTATCAAAATTACCATT
*
26869541 ATACCGCTAGG
1 ATACCCCTAGG
26869552 GTTAATTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAGGTATCAAAATTACCATT
Found at i:26869697 original size:27 final size:27
Alignment explanation
Indices: 26869659--26869767 Score: 150
Period size: 27 Copynumber: 4.0 Consensus size: 27
26869649 AAGCGTTCTA
26869659 GTGGCTCTGCCACAAATATCTG-ATCTG
1 GTGGCTCTGCCAC-AATATCTGTATCTG
*
26869686 GTGGCTCTGCCACAAATATCTGTTTCTG
1 GTGGCTCTGCCAC-AATATCTGTATCTG
*
26869714 GTGGCTATGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
26869741 GTGACTCTGTCACAATATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
26869767 G
1 G
26869768 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 5 0.07
27 54 0.72
28 16 0.21
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:26869761 original size:54 final size:54
Alignment explanation
Indices: 26869653--26869767 Score: 162
Period size: 55 Copynumber: 2.1 Consensus size: 54
26869643 TGGAGGAAGC
* * *
26869653 GTTCTAGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
*
26869707 GTTTCTGGTGGCTATGCCAC-AATATCTGTATCTGGTGACTCTGTCAC-AATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCT
26869761 GTTCTGG
1 GTTCTGG
26869768 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
53 6 0.11
54 17 0.31
55 32 0.58
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
Found at i:26877540 original size:27 final size:27
Alignment explanation
Indices: 26877502--26877614 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
26877492 GAGGAAGCGT
26877502 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
26877529 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
26877557 TCTGGTGGCTCTACCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* * *
26877584 TCTAGTGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
26877610 TCTGG
1 TCTGG
26877615 CAGCCATGCC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 4 0.05
27 57 0.74
28 16 0.21
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:26877608 original size:54 final size:54
Alignment explanation
Indices: 26877500--26877614 Score: 162
Period size: 55 Copynumber: 2.1 Consensus size: 54
26877490 TGGAGGAAGC
* * *
26877500 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAATATCTGATCTAGTGACTCTGCCACAAATATCT
*
26877554 GTTTCTGGTGGCTCTACCAC-AATATCTGTATCTAGTGACTCTGTCAC-AATATCT
1 G-TTCTGGTGGCTCTACCACAAATATCTG-ATCTAGTGACTCTGCCACAAATATCT
26877608 GTTCTGG
1 GTTCTGG
26877615 CAGCCATGCC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
53 6 0.11
54 17 0.31
55 32 0.58
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCTCTACCACAAATATCTGATCTAGTGACTCTGCCACAAATATCT
Found at i:26887558 original size:10 final size:10
Alignment explanation
Indices: 26887543--26887573 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
26887533 GCTTAGGCAT
*
26887543 TTTTGGACCA
1 TTTTGGGCCA
26887553 TTTTGGGCCA
1 TTTTGGGCCA
26887563 TTTTGGGCCA
1 TTTTGGGCCA
26887573 T
1 T
26887574 ATTCGGTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.42
Consensus pattern (10 bp):
TTTTGGGCCA
Found at i:26891890 original size:40 final size:40
Alignment explanation
Indices: 26891811--26892028 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
26891801 AAGCCAGGTA
* * * * *
26891811 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
26891850 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26891890 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26891930 CCTTCGGGGCTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * **
26891970 CCTTCAGGACTTAGCTCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26892010 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26892029 TTATCATCCG
Statistics
Matches: 155, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
39 13 0.08
40 142 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Done.