Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 78 of 235
Found at i:26899228 original size:9 final size:9
Alignment explanation
Indices: 26899214--26899239 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26899204 CAAGTCCACA
26899214 TATTTCACT
1 TATTTCACT
26899223 TATTTCACT
1 TATTTCACT
26899232 TATTTCAC
1 TATTTCAC
26899240 ATTTTAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (9 bp):
TATTTCACT
Found at i:26901862 original size:42 final size:43
Alignment explanation
Indices: 26901816--26901912 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 43
26901806 ATCATGTCTA
* * * **
26901816 GGACATTGGCATC-GTATATGATTTCGTGTAAGACCCTGTATG
1 GGACATTGGCATCAATATATGATTACATGTAAGACCAAGTATG
* * *
26901858 GGACAGTGGCATCAATATTTGATTACATGTAAGACCAAGTCTG
1 GGACATTGGCATCAATATATGATTACATGTAAGACCAAGTATG
26901901 GGACATTGGCAT
1 GGACATTGGCAT
26901913 TGTAGGAGCT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 12 0.27
43 33 0.73
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
GGACATTGGCATCAATATATGATTACATGTAAGACCAAGTATG
Found at i:26905659 original size:28 final size:27
Alignment explanation
Indices: 26905627--26905689 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26905617 CTCAAATACT
26905627 AAGTGCCATACTCAATATCTCGCACACC
1 AAGTGCCATACT-AATATCTCGCACACC
* * * * *
26905655 AAGTGCCATTCTTATATTTCTCACACT
1 AAGTGCCATACTAATATCTCGCACACC
26905682 AAGTGCCA
1 AAGTGCCA
26905690 CATATATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.29
Consensus pattern (27 bp):
AAGTGCCATACTAATATCTCGCACACC
Found at i:26907807 original size:25 final size:25
Alignment explanation
Indices: 26907761--26907831 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
26907751 GAGGAAGTGC
* *
26907761 AAAAGGGCTTTTGCCCTAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
* *
26907787 AAAAGGGCTTTGCCCCGGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
26907812 AAAAGAGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
26907832 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 31 0.79
26 8 0.21
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:26908086 original size:30 final size:31
Alignment explanation
Indices: 26908052--26908134 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
26908042 CATTTACAGT
26908052 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
26908082 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
26908113 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
26908135 TTGAGATTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 26 0.53
31 23 0.47
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:26908117 original size:31 final size:30
Alignment explanation
Indices: 26908052--26908129 Score: 129
Period size: 31 Copynumber: 2.6 Consensus size: 30
26908042 CATTTACAGT
*
26908052 AAAGGCTTCGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
26908082 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
26908113 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
26908130 ATATGTTGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 22 0.49
31 23 0.51
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.21
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:26919724 original size:46 final size:46
Alignment explanation
Indices: 26919619--26919744 Score: 130
Period size: 46 Copynumber: 2.7 Consensus size: 46
26919609 GGTCACTTAT
* * **
26919619 GTAAGCCAGTGTAAGACCATGTCTGGGACACGGCATTGGCATTAAGAC
1 GTAAGCCAGTGT-AGAACATGTCTGGGACA-TGCATCAGCATTAAGAC
* * * *
26919667 G-AGTGCTAGTGTAGAACATGTCTGGTACATGCATCAGCCTTAAGAC
1 GTA-AGCCAGTGTAGAACATGTCTGGGACATGCATCAGCATTAAGAC
26919713 GTAAGCCAGTGTA-AGACATGTCTGGGACATGC
1 GTAAGCCAGTGTAGA-ACATGTCTGGGACATGC
26919745 GTTGCCTACG
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
45 1 0.02
46 38 0.59
47 17 0.27
48 8 0.12
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GTAAGCCAGTGTAGAACATGTCTGGGACATGCATCAGCATTAAGAC
Found at i:26923133 original size:54 final size:54
Alignment explanation
Indices: 26922235--26923131 Score: 1706
Period size: 54 Copynumber: 16.6 Consensus size: 54
26922225 GTGACGAAGT
* *
26922235 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922289 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922343 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922397 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922451 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922505 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922559 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922613 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922667 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922721 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922775 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922829 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922883 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922937 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
26922991 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * * *
26923045 CACCAGATCAGATAATCGTGGCATAGCCGCCAGGACAAATATATGTGGCAGAGC
1 CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
26923099 CACCAAATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATAGTGGCATAGCCACCAG
26923132 GATGCTTCCT
Statistics
Matches: 833, Mismatches: 9, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
53 5 0.01
54 828 0.99
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:26925769 original size:39 final size:39
Alignment explanation
Indices: 26925717--26925919 Score: 289
Period size: 39 Copynumber: 5.2 Consensus size: 39
26925707 TATGAGATTG
* *
26925717 AAAATATCCGGACATAAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* *
26925756 AAAATATCTGGACATGAGATCCGTAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
*
26925795 AAAATATCCGGACATGAGATCCGCATGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
*
26925834 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* * * * * **
26925873 AATATATCCGGACTTGAGGTCCACTGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
26925912 AAAATATC
1 AAAATATC
26925920 TGGGTTAAAG
Statistics
Matches: 146, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
Found at i:26927923 original size:26 final size:26
Alignment explanation
Indices: 26927892--26927947 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
26927882 TGAAATTTCC
26927892 ATCATGGAACATTTACCTAAACC-ATT
1 ATCATGGAACATTTACCT-AACCTATT
26927918 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCTATT
26927944 ATCA
1 ATCA
26927948 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCTATT
Found at i:26929355 original size:26 final size:26
Alignment explanation
Indices: 26929318--26929371 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26929308 TGTCAGACAT
26929318 TTCCCTAAAAACTCCGTTACTTCTCG
1 TTCCCTAAAAACTCCGTTACTTCTCG
* * *
26929344 TTCCCTACAAACTCTGTTACTTTTCG
1 TTCCCTAAAAACTCCGTTACTTCTCG
26929370 TT
1 TT
26929372 TAAGTCCAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.31, G:0.07, T:0.41
Consensus pattern (26 bp):
TTCCCTAAAAACTCCGTTACTTCTCG
Found at i:26933186 original size:54 final size:54
Alignment explanation
Indices: 26933111--26934009 Score: 1710
Period size: 54 Copynumber: 16.6 Consensus size: 54
26933101 GTGAGGAAGT
* * * * *
26933111 CACCAGATACAGAT-ATTGTGGCAGAACCACCAGAATAGATATATGTGGCATAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
26933165 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
26933219 CACTAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933273 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933327 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933381 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933435 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933489 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933543 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933597 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933651 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933705 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933759 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933813 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933867 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933921 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
26933975 CACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGA
26934010 TGCTTCCTCC
Statistics
Matches: 835, Mismatches: 9, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
53 5 0.01
54 830 0.99
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:26935682 original size:52 final size:52
Alignment explanation
Indices: 26935605--26936440 Score: 1638
Period size: 52 Copynumber: 16.1 Consensus size: 52
26935595 TGAAATGCCC
*
26935605 ATCATGGAAC-ATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGG-ACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26935657 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26935709 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26935761 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26935813 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26935865 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26935917 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26935969 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936021 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936073 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936125 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936177 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936229 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936281 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936333 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
*
26936385 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCTATT
1 ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
26936437 ATCA
1 ATCA
26936441 ATTTGTACCA
Statistics
Matches: 781, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
51 2 0.00
52 779 1.00
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.34
Consensus pattern (52 bp):
ATCATGGACTATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:26939041 original size:33 final size:33
Alignment explanation
Indices: 26939004--26939099 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 33
26938994 CTATGGGCCA
* *
26939004 TACTGTTATCTGAAAAGGGGCTGAGGCCCAGT-T
1 TACTGTTATCTGAAAA-GGGCTTAGGCCCAGTAC
* *
26939037 TACTG-TATTTTGAAAAGGGCTTCGGCCCAGTACC
1 TACTGTTA-TCTGAAAAGGGCTTAGGCCCAGTA-C
*
26939071 TACTGTTATCTGAATAGGGCTTAGGCCCA
1 TACTGTTATCTGAAAAGGGCTTAGGCCCA
26939100 ATGGGCTTGG
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
32 15 0.29
33 12 0.23
34 23 0.44
35 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (33 bp):
TACTGTTATCTGAAAAGGGCTTAGGCCCAGTAC
Found at i:26940193 original size:34 final size:35
Alignment explanation
Indices: 26940154--26940225 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
26940144 ATTCTATAGT
*
26940154 TAGGGAAATACTG-AAACTGTAGAA-ACTGAGACAG
1 TAGGGAAA-ACTGAAAACTGTAGAAGACTAAGACAG
* *
26940188 TAGGGAAAACTGAAAACTTTAGAAGACTAAGACTG
1 TAGGGAAAACTGAAAACTGTAGAAGACTAAGACAG
26940223 TAG
1 TAG
26940226 CTAGGATACG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 4 0.12
34 18 0.55
35 11 0.33
ACGTcount: A:0.44, C:0.11, G:0.25, T:0.19
Consensus pattern (35 bp):
TAGGGAAAACTGAAAACTGTAGAAGACTAAGACAG
Found at i:26942204 original size:46 final size:46
Alignment explanation
Indices: 26942129--26942300 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
26942119 TGTAACCCGC
* * * * *
26942129 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * * *
26942175 CCATGAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAATTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * **
26942225 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
26942268 CCATAAGTGAAGTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
26942301 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.55
47 26 0.26
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:26942295 original size:93 final size:93
Alignment explanation
Indices: 26942136--26942307 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
26942126 CGCCCATAAG
** * *
26942136 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26942201 ACGAGTTTGGATGCCTAATTACATCTCA
66 ACGAGTTTGGATGCCTAATTACATCTCA
* * * *
26942229 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAAGTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26942294 ACGAGTTTGGATGC
66 ACGAGTTTGGATGC
26942308 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTTGGATGCCTAATTACATCTCA
Found at i:26942323 original size:46 final size:45
Alignment explanation
Indices: 26942180--26942323 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 45
26942170 CGCATCCATG
*
26942180 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAATTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTC-AA--CCATCT
* * * * * *
26942227 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTTG--GATGCT-CAACCATCT
*
26942273 AGTGAAGTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCAT-CT
26942319 AGTGA
1 AGTGA
26942324 CATGTCACTT
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 30 0.41
47 29 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCT
Found at i:26944257 original size:20 final size:20
Alignment explanation
Indices: 26944228--26944268 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26944218 AAATTCCTTT
26944228 TCCTTAGTGCCGATTTCTTC
1 TCCTTAGTGCCGATTTCTTC
* *
26944248 TCCTTGGTGCTGATTTCTTC
1 TCCTTAGTGCCGATTTCTTC
26944268 T
1 T
26944269 TCCTCTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.27, G:0.17, T:0.49
Consensus pattern (20 bp):
TCCTTAGTGCCGATTTCTTC
Found at i:26947609 original size:31 final size:32
Alignment explanation
Indices: 26947492--26947641 Score: 214
Period size: 32 Copynumber: 4.8 Consensus size: 32
26947482 CACGACTTAC
* *
26947492 AGCCATCAGTAGCGGTAATATGATCGGCACAA
1 AGCCATCAGTAGCTGTAATATGATCGACACAA
** * *
26947524 AGAAAACAATAGCTGTAATATGATCGACACAA
1 AGCCATCAGTAGCTGTAATATGATCGACACAA
*
26947556 AGCCATCAGTAGCTATAATATGATCGACACAA
1 AGCCATCAGTAGCTGTAATATGATCGACACAA
*
26947588 AGCCATCAGTA-CTGTAATATGATCGGCACAA
1 AGCCATCAGTAGCTGTAATATGATCGACACAA
26947619 AGCCATCAGTA-CTGTAATATGAT
1 AGCCATCAGTAGCTGTAATATGAT
26947642 TGGTAACAAG
Statistics
Matches: 105, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 41 0.39
32 64 0.61
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (32 bp):
AGCCATCAGTAGCTGTAATATGATCGACACAA
Found at i:26950233 original size:35 final size:35
Alignment explanation
Indices: 26950185--26950251 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
26950175 TTTATAACAG
* *
26950185 TTCAATTACAAATAAACATATATAACTCAATTCAA
1 TTCAATAACAAATAAACATATATAACCCAATTCAA
* * *
26950220 TTCAATAATAAATAAGCATTTATAACCCAATT
1 TTCAATAACAAATAAACATATATAACCCAATT
26950252 TAAATACGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.33
Consensus pattern (35 bp):
TTCAATAACAAATAAACATATATAACCCAATTCAA
Found at i:26954303 original size:40 final size:41
Alignment explanation
Indices: 26954259--26954516 Score: 216
Period size: 40 Copynumber: 6.5 Consensus size: 41
26954249 CTGAATGCTG
* * * *
26954259 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTGAGTGACTAAA
* *
26954299 TCCGGATTAAGAT-CCGAAGGCCTTTGTGC-GAGAT-ACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCTGAG-TGACTAAA
* *
26954339 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTGAG-TGACTAAA
* * *
26954379 TCCGGGTTAAGTCCCGAAGGCATTCGTG-TGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTGAGTGACTAAA
* *
26954419 TCCGGGTTATGTCCCGAAGGCA-TTGTG-TGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTGAGTGACTAAA
* * * ** *
26954458 ACCGGGCTATGTCCCGAAGGCATTTGAAC-GAG-GAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTGAGTGA-CTAAA
*
26954498 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26954517 TACGTGATTT
Statistics
Matches: 184, Mismatches: 24, Indels: 21
0.80 0.10 0.09
Matches are distributed among these distances:
39 51 0.28
40 124 0.67
41 9 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCTGAGTGACTAAA
Found at i:26954463 original size:39 final size:40
Alignment explanation
Indices: 26954259--26954481 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
26954249 CTGAATGCTG
* * * * * *
26954259 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
26954299 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
26954339 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
26954379 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
26954419 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
26954458 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26954482 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 116 0.72
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:26954501 original size:79 final size:80
Alignment explanation
Indices: 26954333--26954516 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
26954323 TGTGCGAGAT
** * *
26954333 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
*** *
26954398 GCATTCGTGTGAGTT
66 GCATTCGAACGAGTG
* * * *
26954413 ATTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
*
26954477 GCATTTGAACGAG-G
66 GCATTCGAACGAGTG
* *
26954491 AGCTATATCC-GGTTAAATCCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
26954517 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.17
79 43 0.50
80 28 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
GCATTCGAACGAGTG
Found at i:26966319 original size:46 final size:46
Alignment explanation
Indices: 26966269--26967134 Score: 1596
Period size: 46 Copynumber: 18.8 Consensus size: 46
26966259 TGGTTGAGCA
26966269 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26966315 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
26966360 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966408 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966454 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966500 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966546 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966592 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966638 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966684 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966776 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966822 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966868 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26966960 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26967006 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
26967052 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26967098 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26967135 GCGGGTTACA
Statistics
Matches: 801, Mismatches: 10, Indels: 18
0.97 0.01 0.02
Matches are distributed among these distances:
42 2 0.00
43 5 0.01
45 3 0.00
46 752 0.94
47 29 0.04
48 3 0.00
50 5 0.01
51 2 0.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26982924 original size:46 final size:46
Alignment explanation
Indices: 26982801--26982925 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 46
26982791 ACAAGTCTTG
* *
26982801 TACCCCTGAGTTGCAGTGGGATGGATTCAAGAAGATACAAATCCTA
1 TACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATACAAAGCCTA
* * *
26982847 TACCCCTGAGTTGCAGTGGGATGCATTGAAGATGGTACAAAGCCTA
1 TACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATACAAAGCCTA
* *
26982893 TACCCCTGAGTTACAGTGGGATGGATGGAAGAA
1 TACCCCTGAGTTGCAGTGGGATGGATTGAAGAA
26982926 ACCACAAATT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (46 bp):
TACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATACAAAGCCTA
Found at i:26983344 original size:44 final size:45
Alignment explanation
Indices: 26983296--26983394 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
26983286 GAGGTGGAGT
* *
26983296 AGATTGAAGCCACAG-GTCTTATCTCCCTAAAGTTACAGCAGAAC
1 AGATTAAAGCCACAGAATCTTATCTCCCTAAAGTTACAGCAGAAC
* * * * *
26983340 AGATTAAAGACAGAGAATCTTATTTCCCTAAAGTTGCAGTAGAAC
1 AGATTAAAGCCACAGAATCTTATCTCCCTAAAGTTACAGCAGAAC
26983385 AGATTAAAGC
1 AGATTAAAGC
26983395 TACAAATTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
44 12 0.26
45 34 0.74
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (45 bp):
AGATTAAAGCCACAGAATCTTATCTCCCTAAAGTTACAGCAGAAC
Found at i:26983614 original size:44 final size:43
Alignment explanation
Indices: 26983566--26983668 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 43
26983556 GAAATTACAT
* *
26983566 TGGAGTAGATTGAAGCTAAAATCCTTATCTCTCTGAAGTTGCAG
1 TGGAGTAGATTGAAGC-AAAAGCCTTATCTCCCTGAAGTTGCAG
* **
26983610 TGGAGCAGATTGAAGGCACCAGCCTTATCTCCCTGAAGTTGCAG
1 TGGAGTAGATTGAA-GCAAAAGCCTTATCTCCCTGAAGTTGCAG
* *
26983654 CGGAGTAGACTGAAG
1 TGGAGTAGATTGAAG
26983669 ATAGCGAATC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.02
44 47 0.94
45 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (43 bp):
TGGAGTAGATTGAAGCAAAAGCCTTATCTCCCTGAAGTTGCAG
Found at i:26983852 original size:143 final size:143
Alignment explanation
Indices: 26983589--26983899 Score: 408
Period size: 143 Copynumber: 2.2 Consensus size: 143
26983579 AGCTAAAATC
* * * * * * *
26983589 CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGGCACCAGCCTTATCTCCCTGAAGTTGCAG
1 CTTATCTTTCTAAAGTTGCAGTGAACCAAATTGAAGCCACCAGCCTTATCTCCCTGAAATTGCAG
* * * * *
26983654 CGGAGTAGACTGAAGATAGCGAATCTTATTTCCATGAAATTATAGTGGAATAGATTGAAGCTACA
66 CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTACAGTGGAACAGATTGAAGCTACA
26983719 AACTATGGCGGAT
131 AACTATGGCGGAT
* * * *
26983732 CTTATCTTTCTAAAGTTGTAGTGAACCAAATTGGAGCCACTAGCCTTATCTTCCTGAAATTGCAG
1 CTTATCTTTCTAAAGTTGCAGTGAACCAAATTGAAGCCACCAGCCTTATCTCCCTGAAATTGCAG
* * *
26983797 CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCTTGGAATTGCAGTGGAACAGATTGAAGCTACA
66 CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTACAGTGGAACAGATTGAAGCTACA
* *
26983862 AATTATGGTGGAT
131 AACTATGGCGGAT
*
26983875 CTTATCTTCCTGAAA-TTGCAGTGAA
1 CTTATCTTTCT-AAAGTTGCAGTGAA
26983900 GTAGATCGAA
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
143 141 0.98
144 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (143 bp):
CTTATCTTTCTAAAGTTGCAGTGAACCAAATTGAAGCCACCAGCCTTATCTCCCTGAAATTGCAG
CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTACAGTGGAACAGATTGAAGCTACA
AACTATGGCGGAT
Found at i:26983922 original size:143 final size:143
Alignment explanation
Indices: 26983632--26983939 Score: 393
Period size: 143 Copynumber: 2.2 Consensus size: 143
26983622 AAGGCACCAG
* * * *
26983632 CCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTGAAGATAGCGAATCTTATTTCCATGAAATTAT
1 CCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTAC
* * *
26983697 AGTGGAATAGATTGAAGCTACAAACTATGGCGGATCTTATCTTTCTAAAGTTGTAGTGAACCAAA
66 AGTGGAACAGATTGAAGCTACAAACTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGAACCAAA
* * * *
26983762 TTGGAGCCACTAG
131 TCGAAGCCACAAA
* * * * *
26983775 CCTTATCTTCCTGAAATTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCTTGGAATTGC
1 CCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTAC
* * ** *
26983840 AGTGGAACAGATTGAAGCTACAAATTATGGTGGATCTTATCTTCCTGAAA-TTGCAGTGAAGTAG
66 AGTGGAACAGATTGAAGCTACAAACTATGGCGGATCTTATCTTCCT-AAAGTTGCAGTGAACCAA
**
26983904 ATCGAATTCACAAA
130 ATCGAAGCCACAAA
26983918 CCTTATCTCCCTGAAGTTGCAG
1 CCTTATCTCCCTGAAGTTGCAG
26983940 TGAAATTACC
Statistics
Matches: 139, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
143 136 0.98
144 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (143 bp):
CCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTAC
AGTGGAACAGATTGAAGCTACAAACTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGAACCAAA
TCGAAGCCACAAA
Found at i:26985745 original size:28 final size:28
Alignment explanation
Indices: 26985714--26985767 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
26985704 TTGTACATTT
* *
26985714 TTATTTCTATTTTATTTTACTTATTTAC
1 TTATTTATATTGTATTTTACTTATTTAC
*
26985742 TTATTTATATTGTATTTTTCTTATTT
1 TTATTTATATTGTATTTTACTTATTT
26985768 GGTGTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (28 bp):
TTATTTATATTGTATTTTACTTATTTAC
Found at i:26999061 original size:16 final size:17
Alignment explanation
Indices: 26999040--26999073 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26999030 AATGTTAGGG
*
26999040 GCAAAAGTGT-AATTTT
1 GCAAAAGTATGAATTTT
26999056 GCAAAAGTATGAATTTT
1 GCAAAAGTATGAATTTT
26999073 G
1 G
26999074 GACTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (17 bp):
GCAAAAGTATGAATTTT
Found at i:27000403 original size:151 final size:151
Alignment explanation
Indices: 27000130--27000403 Score: 352
Period size: 151 Copynumber: 1.8 Consensus size: 151
27000120 CGGGCGTGTG
* *
27000130 GCTTGGCCGTATGACCTAACTCAGAGAGTTACACGGGCACAGACACGAGCTGGGACACGACCATG
1 GCTTGGCCATATGACCTAACTCAGAGAGTTACACGAGCACAGACACGAGCTGGGACACGACCATG
* * ** ** * *
27000195 TGACCCTATTTTGATTGTTATATGGCCTAAGACATGGGCGTGTGTCTCAGCTATGTGTATCACAC
66 TGACCCTATTTTGATTGTTAAACGGCCTAAGACACAGGCGTGCATCTCAACCATGTGTATCACAC
27000260 GGCCTGGCATACGGACATGCA
131 GGCCTGGCATACGGACATGCA
* * * * * * *
27000281 GCTTGGCCATGTGACCTAATTTAGAGAGTTACACTAGCA-AGGACACGGGCTGGTACACGGCCAT
1 GCTTGGCCATATGACCTAACTCAGAGAGTTACACGAGCACA-GACACGAGCTGGGACACGACCAT
* * *
27000345 GTGTCCCTATTTTGATTGTTAAACGGCCTGAGACACAGGCGTGCATCTCAACCGTGTGT
65 GTGACCCTATTTTGATTGTTAAACGGCCTAAGACACAGGCGTGCATCTCAACCATGTGT
27000404 GTCAAATAGC
Statistics
Matches: 102, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
150 1 0.01
151 101 0.99
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (151 bp):
GCTTGGCCATATGACCTAACTCAGAGAGTTACACGAGCACAGACACGAGCTGGGACACGACCATG
TGACCCTATTTTGATTGTTAAACGGCCTAAGACACAGGCGTGCATCTCAACCATGTGTATCACAC
GGCCTGGCATACGGACATGCA
Found at i:27013101 original size:39 final size:39
Alignment explanation
Indices: 27012897--27013119 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
27012887 TTGAATGCTG
* * * * *
27012897 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
27012937 TCCGGACTAAGAT-CCGAAGGCATGTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCAT-TGTGCGAGATACTAAA
* * *
27012976 TTCCGGGTTAAGCCCCCAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
27013017 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
27013057 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
27013096 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
27013120 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:27017733 original size:49 final size:49
Alignment explanation
Indices: 27017680--27017954 Score: 370
Period size: 49 Copynumber: 5.5 Consensus size: 49
27017670 CTGGTACGCA
*
27017680 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * * * *
27017729 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
*
27017780 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * * * *
27017829 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
27017880 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
27017929 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
27017955 CGTGACCTCA
Statistics
Matches: 191, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
49 103 0.54
50 12 0.06
51 76 0.40
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:27017808 original size:100 final size:100
Alignment explanation
Indices: 27017667--27017959 Score: 559
Period size: 100 Copynumber: 2.9 Consensus size: 100
27017657 TAGCCAAAGC
*
27017667 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAG
27017732 TAACCTGCACTTAGTACTACACACGTGATCGAAGT
66 TAACCTGCACTTAGTACTACACACGTGATCGAAGT
27017767 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAG
27017832 TAACCTGCACTTAGTACTACACACGTGATCGAAGT
66 TAACCTGCACTTAGTACTACACACGTGATCGAAGT
*
27017867 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAG
*
27017932 TAGCCTGCACTTAGTACTACACACGTGA
66 TAACCTGCACTTAGTACTACACACGTGA
27017960 CCTCACAATA
Statistics
Matches: 190, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 190 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAG
TAACCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:27018124 original size:5 final size:5
Alignment explanation
Indices: 27018109--27018143 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
27018099 ATTTCATATG
* *
27018109 AAAAC AAAAT ATAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
27018144 CGATAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:27019509 original size:19 final size:18
Alignment explanation
Indices: 27019487--27019556 Score: 86
Period size: 18 Copynumber: 3.8 Consensus size: 18
27019477 ATTCTATATA
27019487 TTTTATAATTTTTTACGAT
1 TTTTAT-ATTTTTTACGAT
*** *
27019506 TTTTATAAAAATTTACCAT
1 TTTTAT-ATTTTTTACGAT
27019525 TTTTATATTTTTTACGAT
1 TTTTATATTTTTTACGAT
27019543 TTTTATATTTTTTA
1 TTTTATATTTTTTA
27019557 ATTAAAACTT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
18 22 0.51
19 21 0.49
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTTATATTTTTTACGAT
Found at i:27029517 original size:45 final size:43
Alignment explanation
Indices: 27029468--27029644 Score: 182
Period size: 45 Copynumber: 4.0 Consensus size: 43
27029458 TAGGATTTTG
27029468 ATATGTATTTCTGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATATG-ATTTC-GAGTAAGACCATGTCTGGGACGTTGGCATCGAT
* *
27029513 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATA--TGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * * *
27029558 ATACATGGTTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T
1 AT--ATGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * *
27029602 AT-TAGA-TTCGAGTAAGACCCTGTTTGGGAAGTT-GCATCGAT
1 ATAT-GATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
27029643 AT
1 AT
27029645 GAGATAGCAT
Statistics
Matches: 114, Mismatches: 12, Indels: 16
0.80 0.08 0.11
Matches are distributed among these distances:
40 6 0.05
41 25 0.22
42 1 0.01
44 3 0.03
45 72 0.63
46 4 0.04
47 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
ATATGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
Found at i:27030474 original size:6 final size:6
Alignment explanation
Indices: 27030458--27030707 Score: 176
Period size: 6 Copynumber: 41.0 Consensus size: 6
27030448 AGATTGGAAC
* *
27030458 CAGAAT GAGAAT TAGAAT CAGAAT CAGTAA- CAGAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAG-AAT CAGAAT CAGAAT CAGAAT
* * * *
27030506 CA-ATAT TAGTAA- CAGAAT CAGAAT CAAAAT CAGAAT TAG-GT GACAGAAT
1 CAGA-AT CAG-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT
* * * * *
27030555 TAGAAT CAGAAT CAGCAA- CAAAAT CAGAAT CAGAAT TAGTAT TAGTAA-
1 CAGAAT CAGAAT CAG-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAG-AAT
* *
27030603 CAGAAT CAGAAT CAGAAT CAGAAT TACGTGA- CAGAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* * *
27030652 CAG-GT GACAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT
1 CAGAAT --CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT
27030702 CAGAAT
1 CAGAAT
27030708 GTGAATGCAA
Statistics
Matches: 193, Mismatches: 29, Indels: 44
0.73 0.11 0.17
Matches are distributed among these distances:
5 14 0.07
6 158 0.82
7 16 0.08
8 5 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:27030555 original size:85 final size:85
Alignment explanation
Indices: 27030465--27030703 Score: 370
Period size: 85 Copynumber: 2.8 Consensus size: 85
27030455 AACCAGAATG
*
27030465 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
27030530 CAAAATCAGAATTAGGTGAC
66 CAAAATCAGAATTACGTGAC
* * *
27030550 AGAATTAGAATCAGAATCAGCAACAAAATCAGAATCAGAATTAGTATTAGTAACAGAATCAGAAT
1 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
27030615 CAGAATCAGAATTACGTGAC
66 CAAAATCAGAATTACGTGAC
* * * *
27030635 AGAATCAGAATCAGAATCAGGTGACAGAATCAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AGAATTAGAATCAGAATCA-GTAACAGAATCAGAATCAGAATCAGTATTA-GTAACAGAATCAGA
27030700 ATCA
64 ATCA
27030704 GAATGTGAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
85 97 0.70
86 25 0.18
87 17 0.12
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAAAATCAGAATTACGTGAC
Found at i:27030693 original size:25 final size:25
Alignment explanation
Indices: 27030524--27030704 Score: 125
Period size: 25 Copynumber: 6.8 Consensus size: 25
27030514 GTAACAGAAT
* * *
27030524 CAGAATCAAAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
27030549 CAGAATTAGAATCAGAATCA-GCAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
27030573 CAAAATCAGAATCAGAATTAGTATTAGTAA
1 CAGAATCAGAATCAGAATCAG-----GTAA
*
27030603 CAGAATCAGAATCAGAATCAGAATTACGTGA
1 CAGAATCAGAATCAGAATCAG------GTAA
*
27030634 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
27030659 CAGAATCAGAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
27030683 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
27030705 AATGTGAATG
Statistics
Matches: 127, Mismatches: 19, Indels: 19
0.77 0.12 0.12
Matches are distributed among these distances:
24 23 0.18
25 55 0.43
26 2 0.02
30 22 0.17
31 25 0.20
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:27030900 original size:27 final size:27
Alignment explanation
Indices: 27030844--27030901 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
27030834 GTGATGAAGT
* * *
27030844 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
27030871 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
27030898 CACC
1 CACC
27030902 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:27031269 original size:27 final size:26
Alignment explanation
Indices: 27031204--27031286 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
27031194 TCGATCGGTC
* * *
27031204 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
27031230 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
27031257 AACAGATATTTGTGGCATACCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
27031284 AAC
1 AAC
27031287 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:27031587 original size:54 final size:53
Alignment explanation
Indices: 27031487--27031672 Score: 223
Period size: 54 Copynumber: 3.5 Consensus size: 53
27031477 GGCAAAATGG
* * *
27031487 TAATTTTACCCCACAAGGGTATCTCGATAATTTTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGATAA-TTTACCCTACAGGGGTATTTCGA
* * * *
27031541 TATTTCTACCCAACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGATAATT-TACCCTACAGGGGTATTTCGA
* * *
27031595 TAATTCTATCCTATAAGGGTATTTC-AGTAATTTACCCTATAGGGGTATTTCGGA
1 TAATTCTACCCTACAAGGGTATTTCGA-TAATTTACCCTACAGGGGTATTTC-GA
*
27031649 -AATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
27031673 AGTAATTGGT
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
53 41 0.36
54 72 0.64
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (53 bp):
TAATTCTACCCTACAAGGGTATTTCGATAATTTACCCTACAGGGGTATTTCGA
Found at i:27031679 original size:27 final size:26
Alignment explanation
Indices: 27031486--27031679 Score: 192
Period size: 27 Copynumber: 7.2 Consensus size: 26
27031476 GGGCAAAATG
* * * *
27031486 GTAATTTTACCCCACAAGGGTATCTC
1 GTAATTCTACCCTACAGGGGTATTTC
*
27031512 GATAATTTTACCCTACAGGGGTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
* * *
27031539 GATATTTCTACCCAACAAGGGTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
*
27031566 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTA-TTTC
* * *
27031594 GTAATTCTATCCTATAAGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
*
27031620 AGTAATT-TACCCTATAGGGGTATTTC
1 -GTAATTCTACCCTACAGGGGTATTTC
*
27031646 GGAAATTCTACCCTACAGGGGTATTTC
1 -GTAATTCTACCCTACAGGGGTATTTC
27031673 AGTAATT
1 -GTAATT
27031680 GGTAAACTAA
Statistics
Matches: 142, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 26 0.18
27 112 0.79
28 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (26 bp):
GTAATTCTACCCTACAGGGGTATTTC
Found at i:27033597 original size:40 final size:39
Alignment explanation
Indices: 27033553--27033702 Score: 167
Period size: 40 Copynumber: 3.8 Consensus size: 39
27033543 GATATAACGC
* *
27033553 CTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATT--AGTAA
*
27033593 CTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAA
* * * *
27033633 CTCGCACAATTGCCTTTGGGACTTAGCTCGGATTAGTCA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTAA
* ** *
27033672 CTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGG
27033703 TTTTCATCCA
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 30 0.32
40 63 0.66
42 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTAA
Found at i:27041798 original size:40 final size:41
Alignment explanation
Indices: 27041743--27041859 Score: 175
Period size: 40 Copynumber: 2.9 Consensus size: 41
27041733 GGATATAACT
* *
27041743 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* *
27041783 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
*
27041823 ACTCGCACAAATGCCTTCGGGACTTGGCCCGGATTAG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAG
27041860 TCACTAGTGC
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
40 66 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
Found at i:27041876 original size:39 final size:40
Alignment explanation
Indices: 27041750--27041891 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 40
27041740 ACTACTCGCT
* * *
27041750 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* *
27041790 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* * **
27041830 CAAATGCCTTCGGGACTTGGCCCGGA-TTAGTCACTAGTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
27041869 CAGATGCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
27041892 AGTTTTCATC
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
39 29 0.33
40 58 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:27049075 original size:79 final size:82
Alignment explanation
Indices: 27048964--27049148 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
27048954 GCTACTCGTT
* *
27048964 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
27049027 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
27049044 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
27049107 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
27049124 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27049149 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:27049148 original size:40 final size:40
Alignment explanation
Indices: 27048945--27049148 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
27048935 CGGAATTTAA
** *
27048945 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27048985 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
27049025 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27049064 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
27049104 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
27049144 CCGGA
1 CCGGA
27049149 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27055929 original size:74 final size:74
Alignment explanation
Indices: 27055808--27055955 Score: 251
Period size: 74 Copynumber: 2.0 Consensus size: 74
27055798 AGTCTCCCAT
* *
27055808 GTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGCACAGAGCTT
1 GTTACAGGGATCGACTACACTGACCTTTCCGCATTACGACTTGGATATCTCCCTACACAGAGCTT
27055873 CAATACTGA
66 CAATACTGA
* * *
27055882 GTTACAGGGATCGACTACACTGACCTTTCCGTATTACGACTTGGATATCTCCCTATACAGGGCTT
1 GTTACAGGGATCGACTACACTGACCTTTCCGCATTACGACTTGGATATCTCCCTACACAGAGCTT
27055947 CAATACTGA
66 CAATACTGA
27055956 TGCCGTTTGT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (74 bp):
GTTACAGGGATCGACTACACTGACCTTTCCGCATTACGACTTGGATATCTCCCTACACAGAGCTT
CAATACTGA
Found at i:27057187 original size:40 final size:40
Alignment explanation
Indices: 27057002--27057187 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
27056992 GCTACTCATT
* * *
27057002 CAAATGCCTTCGGGACATAGCCCGGTTATACTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
27057042 CAAATGCCTTCAGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
27057082 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * * *
27057122 CAAGTGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
27057163 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27057188 CATCATTCAA
Statistics
Matches: 125, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 112 0.90
41 10 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:27059986 original size:16 final size:18
Alignment explanation
Indices: 27059965--27059997 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
27059955 AATACCAGAT
27059965 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
27059981 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
27059998 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:27060582 original size:45 final size:45
Alignment explanation
Indices: 27060483--27060691 Score: 262
Period size: 45 Copynumber: 4.7 Consensus size: 45
27060473 CATCGGTATT
*
27060483 TAGCCTGCTAGGCTCAAA-GCCCG-ATA-TCATTTCACCGGCATTA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCGGCATCA
* * *
27060526 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGTATCA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCA
* * *
27060571 TAGCCTACTAGGCTCAAAAGCCTGAATAGTATTTCACCGGCATCA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCA
* * *
27060616 TAGCCTGCTAAGCTAAAAGGCTCGAATAGTATTTCACCGGCATCA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCA
* ** *
27060661 TAGCCAGCTACTCTCAAAGGCTCGAATAGTA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
27060692 CTATACGATA
Statistics
Matches: 143, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
43 17 0.12
44 5 0.03
45 120 0.84
46 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCA
Found at i:27072304 original size:13 final size:14
Alignment explanation
Indices: 27072267--27072304 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
27072257 AAAGATTATG
27072267 TTGATAATAAGCAT
1 TTGATAATAAGCAT
27072281 TTGATAATAAGCAT
1 TTGATAATAAGCAT
27072295 TTGA-AATAAG
1 TTGATAATAAG
27072305 TAAAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (14 bp):
TTGATAATAAGCAT
Found at i:27075706 original size:46 final size:46
Alignment explanation
Indices: 27075634--27076591 Score: 1746
Period size: 46 Copynumber: 20.8 Consensus size: 46
27075624 TGTAACCCGC
* * * *
27075634 CCATAAGTGAACTCGGACTCAGCTCAACGAGCTT-GGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* **
27075680 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ATAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
27075730 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27075773 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27075819 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27075865 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27075911 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27075957 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076003 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076049 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076095 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076141 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076187 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076233 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076279 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076325 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076371 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076417 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076463 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076509 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
27076555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
27076592 TGCTCAACCA
Statistics
Matches: 890, Mismatches: 12, Indels: 20
0.97 0.01 0.02
Matches are distributed among these distances:
42 2 0.00
43 3 0.00
44 2 0.00
45 4 0.00
46 842 0.95
47 28 0.03
48 2 0.00
49 2 0.00
50 3 0.00
51 2 0.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:27077047 original size:30 final size:30
Alignment explanation
Indices: 27077013--27077072 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
27077003 ATTTAATAGG
27077013 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
27077043 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
27077073 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:27081755 original size:46 final size:45
Alignment explanation
Indices: 27081705--27081857 Score: 121
Period size: 46 Copynumber: 3.3 Consensus size: 45
27081695 ACTCGAACTT
27081705 AACTCAACGAGCTCGGGCGTTCCCGTCCATAAGTGAACTCAGACTC
1 AACTCAACGAGCTC-GGCGTTCCCGTCCATAAGTGAACTCAGACTC
* * * * * * * *
27081751 AACTCAACGAGTTCGG-ATGCCTAGTTACATTTCA-CGAACTCGGACTC
1 AACTCAACGAGCTCGGCGTTCC-CG-TCCA--TAAGTGAACTCAGACTC
* * * * *
27081798 AACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGATTC
1 AACTCAACGAGCTC-GGCGTTCCCGTCCATAAGTGAACTCAGACTC
27081844 AACTCAACGAGCTC
1 AACTCAACGAGCTC
27081858 AGATGACTAG
Statistics
Matches: 80, Mismatches: 20, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
44 3 0.04
45 5 0.06
46 39 0.49
47 28 0.35
48 3 0.04
49 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AACTCAACGAGCTCGGCGTTCCCGTCCATAAGTGAACTCAGACTC
Found at i:27081797 original size:47 final size:46
Alignment explanation
Indices: 27081739--27082000 Score: 194
Period size: 47 Copynumber: 5.6 Consensus size: 46
27081729 GTCCATAAGT
*
27081739 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATG-CTAGTTACATTTCAC
* * * * * * * *
27081786 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTAG-TTACATTTCA-C
* * * *
27081832 GAACTCAGATTCAACTCAACGAGCTCAGATGACTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATG-CTAGTTACATTTCAC
* * * * * *
27081879 GAACTCGAACTCAACTCAATGAGTTCGGA--C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTAGTT-ACAT--TTCA-C
* * * *
27081925 GAACTCGAACTCAACTCCACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATG-CTAGTTACATTTCAC
27081972 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
27082001 ACTCAACCAT
Statistics
Matches: 162, Mismatches: 39, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 1 0.01
45 4 0.02
46 58 0.36
47 82 0.51
48 4 0.02
49 1 0.01
50 4 0.02
51 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTAGTTACATTTCAC
Found at i:27081803 original size:93 final size:93
Alignment explanation
Indices: 27081691--27082000 Score: 460
Period size: 93 Copynumber: 3.3 Consensus size: 93
27081681 CCGCCCATAA
* * * * *
27081691 ACGAACTCGAACTTAACTCAACGAGCTCGGGCGTTCCCGTCCATAAGTGAACTCAGACTCAACTC
1 ACGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTC
*
27081756 AACGAGTTCGGATGCCTAGTTACATTTC
66 AACGAGCTCGGATGCCTAGTTACATTTC
* * *
27081784 ACGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGATTCAACTC
1 ACGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTC
* *
27081849 AACGAGCTCAGATGACTAGTTACATTTC
66 AACGAGCTCGGATGCCTAGTTACATTTC
* *
27081877 ACGAACTCGAACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTC-GAACTCAACT
1 ACGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAG-ACTCAACT
* *
27081941 CCACGAGCTCGGATGCCTAGTTACATCTC
65 CAACGAGCTCGGATGCCTAGTTACATTTC
*
27081970 ACGAACTCGGACTCAACTCAACGAGTTCGGA
1 ACGAACTCGAACTCAACTCAACGAGTTCGGA
27082001 ACTCAACCAT
Statistics
Matches: 194, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
92 1 0.01
93 193 0.99
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (93 bp):
ACGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTC
AACGAGCTCGGATGCCTAGTTACATTTC
Found at i:27084240 original size:46 final size:45
Alignment explanation
Indices: 27084202--27084294 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 45
27084192 AATCGACAAG
27084202 GGTACTCCGTGAAGTCTAACAATCTCACTAATATATAATTCAACTAA
1 GGTACTCCGTG-AGTCTAACAATCTCACTAATATATAA-TCAACTAA
* *
27084249 GGTACTCTGTGAGTCTAACAATTTCACTAATATATAATTCAACTAA
1 GGTACTCCGTGAGTCTAACAATCTCACTAATATATAA-TCAACTAA
27084295 CTTATCAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 34 0.77
47 10 0.23
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (45 bp):
GGTACTCCGTGAGTCTAACAATCTCACTAATATATAATCAACTAA
Found at i:27105258 original size:55 final size:54
Alignment explanation
Indices: 27105163--27105312 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
27105153 CTACTTTGTT
* ** * *
27105163 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
27105217 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
27105272 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
27105313 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:27105275 original size:27 final size:27
Alignment explanation
Indices: 27105135--27105312 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
27105125 TAAATTGTAC
27105135 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
27105162 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
27105188 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
27105216 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
27105244 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
27105271 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
27105298 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27105313 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:27105276 original size:82 final size:81
Alignment explanation
Indices: 27105136--27105291 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
27105126 AAATTGTACA
* * * *
27105136 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
27105201 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
27105217 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
27105280 TGTGCGAGTTGA
63 TGTGCGAATTGA
27105292 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:27113268 original size:55 final size:54
Alignment explanation
Indices: 27113173--27113322 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
27113163 CTACTTTGTT
* ** * *
27113173 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
27113227 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
27113282 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
27113323 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:27113285 original size:27 final size:27
Alignment explanation
Indices: 27113145--27113322 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
27113135 TAAATTGTAC
27113145 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
27113172 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
27113198 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
27113226 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
27113254 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
27113281 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
27113308 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27113323 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:27113286 original size:82 final size:81
Alignment explanation
Indices: 27113146--27113301 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
27113136 AAATTGTACA
* * * *
27113146 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
27113211 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
27113227 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
27113290 TGTGCGAGTTGA
63 TGTGCGAATTGA
27113302 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:27118145 original size:13 final size:13
Alignment explanation
Indices: 27118127--27118151 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27118117 TAAGCCACTC
27118127 CACACGGGCGTGT
1 CACACGGGCGTGT
27118140 CACACGGGCGTG
1 CACACGGGCGTG
27118152 CCCCTGTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:27126915 original size:37 final size:37
Alignment explanation
Indices: 27126868--27126943 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
27126858 ATCACTTTAG
27126868 TATTTATTTGCAACAAGGTAACTGAGTGTTATGATAT
1 TATTTATTTGCAACAAGGTAACTGAGTGTTATGATAT
*
27126905 TATTTATTTGCAATAAGGTAACTGAGTGTTATGATAT
1 TATTTATTTGCAACAAGGTAACTGAGTGTTATGATAT
27126942 TA
1 TA
27126944 GTTACAAGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (37 bp):
TATTTATTTGCAACAAGGTAACTGAGTGTTATGATAT
Found at i:27131983 original size:13 final size:13
Alignment explanation
Indices: 27131965--27131996 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
27131955 TTCGAATGGT
27131965 ACACGGGCTAGAC
1 ACACGGGCTAGAC
27131978 ACACGGGCTAGAC
1 ACACGGGCTAGAC
27131991 ACACGG
1 ACACGG
27131997 ACATGTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.31, T:0.06
Consensus pattern (13 bp):
ACACGGGCTAGAC
Found at i:27132684 original size:43 final size:43
Alignment explanation
Indices: 27132591--27132741 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
27132581 GATTACCGAG
*
27132591 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCAT--TGT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTAGCATCAT-T
* *
27132633 ATTGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCATT
1 A-TGTGATTACATGTAAGACCATGTCTAGGACATTAGCATCATT
* * * * * * *
27132677 ATATGATTTCGTATAAGACCCTGTCTAGGACAGTAGCATCAAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTAGCATCATT
* *
27132720 ATGTGATAACATGCAAGACCAT
1 ATGTGATTACATGTAAGACCAT
27132742 ATCTGGGATA
Statistics
Matches: 89, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 1 0.01
43 85 0.96
44 2 0.02
45 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTAGCATCATT
Found at i:27135578 original size:96 final size:96
Alignment explanation
Indices: 27135414--27135608 Score: 338
Period size: 96 Copynumber: 2.0 Consensus size: 96
27135404 TGAAACCAAA
*
27135414 TCGACCTGAATATAGACAGTGTAGAAAATAGCATATCGGTGATTGTAGATTGAATGATCGGGCCT
1 TCGACCTGAATATAGACAGTGTAGAAAAGAGCATATCGGTGATTGTAGATTGAATGATCGGGCCT
27135479 GTTTTAAATGTGGATCATTAGATCATTTCAT
66 GTTTTAAATGTGGATCATTAGATCATTTCAT
* * *
27135510 TCGACCTGAATGTAGACAGTGTGGAAAACGA-TATATCGGTGATTGTAGATTGAATGATCGGGCC
1 TCGACCTGAATATAGACAGTGTAGAAAA-GAGCATATCGGTGATTGTAGATTGAATGATCGGGCC
27135574 TGTTTTAAATGTGGATCATTAGATCATTTCAT
65 TGTTTTAAATGTGGATCATTAGATCATTTCAT
27135606 TCG
1 TCG
27135609 TAACTGTCCT
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
96 93 0.99
97 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (96 bp):
TCGACCTGAATATAGACAGTGTAGAAAAGAGCATATCGGTGATTGTAGATTGAATGATCGGGCCT
GTTTTAAATGTGGATCATTAGATCATTTCAT
Found at i:27141911 original size:42 final size:42
Alignment explanation
Indices: 27141803--27141930 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 42
27141793 AGCTCGTACA
* *
27141803 ATGCCATCATCCCAGATGTGGTCTTACATGTAAACAAATATCG
1 ATGCCATCATCCCAGACGTGGTCTTACACG-AAACAAATATCG
* *
27141846 ATGCCATTATCCTAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCATCATCCCAGAC-GTGGTCTTACACGAAA-CAAATATCG
* *
27141888 ATGCCGA-CGTCCCAGACGTGGTCTTACACGATAACACATATCG
1 ATGCC-ATCATCCCAGACGTGGTCTTACACGA-AACAAATATCG
27141931 GATCCTATGT
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 34 0.48
43 35 0.49
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCATCATCCCAGACGTGGTCTTACACGAAACAAATATCG
Found at i:27142283 original size:43 final size:43
Alignment explanation
Indices: 27142222--27142460 Score: 223
Period size: 43 Copynumber: 5.6 Consensus size: 43
27142212 CCACTAAAGA
* * *
27142222 AAATGCCGTTATAGAACATGACCTTTAGCGGCGCTTTTACAAC
1 AAATGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAC
* * * *
27142265 AAATGCTGCTAAAGAACATGGCCTTTAGCTGCGCTTTTCCCAC
1 AAATGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAC
* * *
27142308 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTGCCAC
1 AAATGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAC
* * ** *
27142351 AAATGCCGCTATAGAACA-AACCTTTAGCGGCATTTTTGCCAC
1 AAATGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAC
* * * * * * *
27142393 AAACGCCACTATAGAACA-GGCCTTTAGC-GCACTTTTCCCAT
1 AAATGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAC
** * *
27142434 AAACACCACTAAAGAACATGACATTTA
1 AAATGCCGCTAAAGAACATGACCTTTA
27142461 AAAAAATATT
Statistics
Matches: 167, Mismatches: 28, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
41 26 0.16
42 52 0.31
43 89 0.53
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
AAATGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAC
Found at i:27142387 original size:42 final size:43
Alignment explanation
Indices: 27142222--27142421 Score: 233
Period size: 43 Copynumber: 4.7 Consensus size: 43
27142212 CCACTAAAGA
* * *
27142222 AAATGCCGTTATAGAACATGACCTTTAGCGGCGCTTTTACAAC
1 AAATGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTGCCAC
* * * * *
27142265 AAATGCTGCTAAAGAACATGGCCTTTAGCTGCGCTTTTCCCAC
1 AAATGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTGCCAC
* * *
27142308 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTGCCAC
1 AAATGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTGCCAC
* **
27142351 AAATGCCGCTATAGAACA-AACCTTTAGCGGCATTTTTGCCAC
1 AAATGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTGCCAC
* * *
27142393 AAACGCCACTATAGAACA-GGCCTTTAGCG
1 AAATGCCGCTATAGAACATGACCTTTAGCG
27142422 CACTTTTCCC
Statistics
Matches: 136, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 47 0.35
43 89 0.65
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
AAATGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTGCCAC
Found at i:27142631 original size:35 final size:35
Alignment explanation
Indices: 27142592--27142660 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
27142582 TTTCTATTAA
*
27142592 AATTTTAACTTAAAAACTAAATATAA-AAATTAATG
1 AATTTAAACTTAAAAACTAAA-ATAATAAATTAATG
* * *
27142627 AATTTAAATTTAGAATCTAAAATAATAAATTAAT
1 AATTTAAACTTAAAAACTAAAATAATAAATTAAT
27142661 AACACAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.14
35 25 0.86
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (35 bp):
AATTTAAACTTAAAAACTAAAATAATAAATTAATG
Found at i:27149588 original size:29 final size:29
Alignment explanation
Indices: 27149555--27149656 Score: 102
Period size: 29 Copynumber: 3.5 Consensus size: 29
27149545 CTACTTAATT
*
27149555 TAAACCCTAAACCCCTACCCACTATCCCC
1 TAAACCCTAAACCCCTACCCACTAACCCC
* *
27149584 TAAACCCTAAACCCTTAACCA-TAAACCCC
1 TAAACCCTAAACCCCTACCCACT-AACCCC
* *
27149613 TAAACACCT-AACTCTTAACCC-CTAACCCC
1 TAAAC-CCTAAACCCCT-ACCCACTAACCCC
*
27149642 TAAACCTTAAACCCC
1 TAAACCCTAAACCCC
27149657 AAGCTATTAG
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
28 3 0.05
29 50 0.83
30 7 0.12
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.19
Consensus pattern (29 bp):
TAAACCCTAAACCCCTACCCACTAACCCC
Found at i:27149616 original size:22 final size:21
Alignment explanation
Indices: 27149582--27149656 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
27149572 CCCACTATCC
27149582 CCTAAA-CCCTAAACCCTTAA
1 CCTAAACCCCTAAACCCTTAA
27149602 CCATAAACCCCTAAACACC-TAA
1 CC-TAAACCCCTAAAC-CCTTAA
* * *
27149624 CTCTTAACCCCTAACCCCTAAA
1 C-CTAAACCCCTAAACCCTTAA
27149646 CCTTAAACCCC
1 CC-TAAACCCC
27149657 AAGCTATTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
20 2 0.04
21 7 0.16
22 33 0.73
23 3 0.07
ACGTcount: A:0.37, C:0.44, G:0.00, T:0.19
Consensus pattern (21 bp):
CCTAAACCCCTAAACCCTTAA
Found at i:27149622 original size:8 final size:7
Alignment explanation
Indices: 27149581--27149655 Score: 62
Period size: 7 Copynumber: 10.4 Consensus size: 7
27149571 ACCCACTATC
27149581 CCCTAAA
1 CCCTAAA
27149588 CCCTAAA
1 CCCTAAA
*
27149595 CCCTTAA
1 CCCTAAA
*
27149602 CCATAAA
1 CCCTAAA
27149609 CCCCTAAA
1 -CCCTAAA
27149617 CACCT-AA
1 C-CCTAAA
* *
27149624 CTCTTAAC
1 C-CCTAAA
*
27149632 CCCTAAC
1 CCCTAAA
27149639 CCCTAAA
1 CCCTAAA
*
27149646 CCTTAAA
1 CCCTAAA
27149653 CCC
1 CCC
27149656 CAAGCTATTA
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
7 43 0.80
8 11 0.20
ACGTcount: A:0.37, C:0.44, G:0.00, T:0.19
Consensus pattern (7 bp):
CCCTAAA
Found at i:27154461 original size:30 final size:30
Alignment explanation
Indices: 27154427--27154486 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
27154417 ATTTAATACG
27154427 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
27154457 AACTTTTGCACAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
27154487 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:27159641 original size:42 final size:43
Alignment explanation
Indices: 27159541--27159692 Score: 179
Period size: 43 Copynumber: 3.5 Consensus size: 43
27159531 AGATCGTACA
*
27159541 ATGCCAACATCCTAGACGTGGTCTTACATGTAAA-CAAATATCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAAATA-CG
27159584 ATGCC-ACTATCCTAGACAG-GGTCTTACACG-AAATCAAATACG
1 ATGCCAAC-ATCCTAGAC-GTGGTCTTACACGTAAATCAAATACG
*
27159626 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCA-AA-TACG
* * *
27159670 ATGCCAACGTCCCAGACATGGTC
1 ATGCCAACATCCTAGACGTGGTC
27159693 ATAACACATA
Statistics
Matches: 97, Mismatches: 4, Indels: 15
0.84 0.03 0.13
Matches are distributed among these distances:
41 1 0.01
42 31 0.32
43 38 0.39
44 26 0.27
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAAATACG
Found at i:27162168 original size:13 final size:13
Alignment explanation
Indices: 27162152--27162184 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
27162142 TTTAATTAAA
*
27162152 TTAGTTAATTAGT
1 TTAGATAATTAGT
27162165 TTAGATAATTAGT
1 TTAGATAATTAGT
27162178 TTA-ATAA
1 TTAGATAA
27162185 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:27165878 original size:75 final size:75
Alignment explanation
Indices: 27165755--27166050 Score: 558
Period size: 75 Copynumber: 4.0 Consensus size: 75
27165745 GAGCGAACCG
27165755 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
1 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
27165820 GGACTTCGAC
66 GGACTTCGAC
27165830 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
1 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
27165895 GGACTTCGAC
66 GGACTTCGAC
27165905 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
1 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
27165970 GGACTTCGAC
66 GGACTTCGAC
* * *
27165980 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTCAATG-CAAGATGTGCCAAAGTTGGTGATCAT
1 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
27166044 GGACTTC
66 GGACTTC
27166051 TATGCGTTCT
Statistics
Matches: 218, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
74 31 0.14
75 187 0.86
ACGTcount: A:0.26, C:0.12, G:0.37, T:0.25
Consensus pattern (75 bp):
GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
GGACTTCGAC
Found at i:27166957 original size:22 final size:22
Alignment explanation
Indices: 27166911--27166958 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
27166901 CCTTTAGGCA
* **
27166911 TCCTGTCTACGGCGTTGAGTTG
1 TCCTGTCTACAGCGTTGAGCCG
27166933 TCCTGTCTACAGCGTTGAGCCG
1 TCCTGTCTACAGCGTTGAGCCG
27166955 TCCT
1 TCCT
27166959 ATTGACTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.10, C:0.29, G:0.27, T:0.33
Consensus pattern (22 bp):
TCCTGTCTACAGCGTTGAGCCG
Found at i:27167426 original size:24 final size:24
Alignment explanation
Indices: 27167394--27167440 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
27167384 CTGTCAGGAG
**
27167394 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
27167418 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
27167441 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:27168898 original size:27 final size:26
Alignment explanation
Indices: 27168858--27168969 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
27168848 AGGAAGCGTC
*
27168858 CTGGTGGCTATGCCACCATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
* *
27168885 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
27168912 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
27168940 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
27168966 CTGG
1 CTGG
27168970 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.66
28 17 0.23
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:27168964 original size:54 final size:54
Alignment explanation
Indices: 27168858--27168969 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
27168848 AGGAAGCGTC
* *
27168858 CTGGTGGCTATGCCACCATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACCATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
27168912 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACCATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
27168966 CTGG
1 CTGG
27168970 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACCATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:27173120 original size:24 final size:24
Alignment explanation
Indices: 27173093--27173139 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
27173083 CTGTCAGGAG
27173093 AGGATTTAGGAGTC-GATAAGGGAT
1 AGGATTTAGGAG-CAGATAAGGGAT
27173117 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
27173140 GGAAATCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:27174136 original size:16 final size:15
Alignment explanation
Indices: 27174110--27174139 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
27174100 ACTAGATCGG
27174110 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
27174125 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
27174140 TTGGTATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:27174661 original size:27 final size:26
Alignment explanation
Indices: 27174559--27174667 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
27174549 AAGCGTCCTA
* **
27174559 GTGGCTATGCCACAATTATCTAATCTG
1 GTGGCTCTGCCAC-ATTATCTGTTCTG
*
27174586 GTGGCTCTGCCACATATTTCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGTTCTG
27174613 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTGT-TCTG
*
27174641 GTGACTCT-CTCACATTATCTGTTCTG
1 GTGGCTCTGC-CACATTATCTGTTCTG
27174667 G
1 G
27174668 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTG
Found at i:27174662 original size:54 final size:54
Alignment explanation
Indices: 27174559--27174667 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
27174549 AAGCGTCCTA
* *
27174559 GTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGTTCTG
1 GTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTTCTG
* * *
27174613 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCT-CTCACAT-TATCTGTTCTG
1 GTGGCTATGCCACAATTATCT-AATCTGGTGACTCTGC-CACATATATCTGTTCTG
27174667 G
1 G
27174668 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTTCTG
Found at i:27180603 original size:25 final size:25
Alignment explanation
Indices: 27180552--27180777 Score: 188
Period size: 25 Copynumber: 9.1 Consensus size: 25
27180542 ACACGCCATG
* * **
27180552 AAGGCTTTCCTGAGAATTCGCTGCA
1 AAGGCTTTCCAGAGAATTCACCACA
* *
27180577 AAGGCTTTCGAGAGAATTTACCACA
1 AAGGCTTTCCAGAGAATTCACCACA
* *
27180602 AAGCCTTTCCAGAGAATTTACCACA
1 AAGGCTTTCCAGAGAATTCACCACA
* * * *
27180627 AAGCCTTTCTAAAG-ATTCACCATA
1 AAGGCTTTCCAGAGAATTCACCACA
*
27180651 AAAGCTTTCCAGAGAATTCACCACA
1 AAGGCTTTCCAGAGAATTCACCACA
** *
27180676 AAGGCTTTTTAGA-AGATTCGCCACA
1 AAGGCTTTCCAGAGA-ATTCACCACA
* * ** *
27180701 AAGGATTTACAGAGAATTTTCCATA
1 AAGGCTTTCCAGAGAATTCACCACA
* ** *
27180726 AAGGCTTTTCAGA-AGATTCATGATA
1 AAGGCTTTCCAGAGA-ATTCACCACA
27180751 AAGGCTTTCCAGAGAATTCACCACA
1 AAGGCTTTCCAGAGAATTCACCACA
27180776 AA
1 AA
27180778 TACTTTTTAG
Statistics
Matches: 159, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
24 20 0.13
25 137 0.86
26 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (25 bp):
AAGGCTTTCCAGAGAATTCACCACA
Found at i:27180717 original size:50 final size:50
Alignment explanation
Indices: 27180552--27180789 Score: 228
Period size: 50 Copynumber: 4.8 Consensus size: 50
27180542 ACACGCCATG
* * ** ** *
27180552 AAGGCTTTCCTGAGAATTCGCTGCAAAGGCTTTCGAG-AGAATTTACCACA
1 AAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAG-ATTCACCACA
* * * * *
27180602 AAGCCTTTCCAGAGAATTTACCACAAAGCCTTTCTA-AAGATTCACCATA
1 AAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCACCACA
* *
27180651 AAAGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCGCCACA
1 AAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCACCACA
* * ** * * ** *
27180701 AAGGATTTACAGAGAATTTTCCATAAAGGCTTTTCAGAAGATTCATGATA
1 AAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCACCACA
**
27180751 AAGGCTTTCCAGAGAATTCACCACAAATACTTTTTAGAA
1 AAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAA
27180790 ATTTGTGTTT
Statistics
Matches: 150, Mismatches: 36, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
49 39 0.26
50 111 0.74
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (50 bp):
AAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCACCACA
Found at i:27183638 original size:27 final size:27
Alignment explanation
Indices: 27183608--27183785 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
27183598 ATATTGAGCC
* * *
27183608 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
27183635 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * *
27183662 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACACAATCAAA-T
** *** *
27183690 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
27183717 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
27183744 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
27183771 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27183786 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:27183967 original size:27 final size:27
Alignment explanation
Indices: 27183935--27184030 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 27
27183925 GCATATAGAC
** *
27183935 TCGCACACTTAGTGCCGCATGGTCAAT
1 TCGCACACTTAGTGCAACATAGTCAAT
* * *
27183962 TCGCACACTTAGTGCATCATATTCATT
1 TCGCACACTTAGTGCAACATAGTCAAT
27183989 TCGCACACTTAGTGCAACATAGTCGAA-
1 TCGCACACTTAGTGCAACATAGTC-AAT
27184016 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
27184031 TGTACAATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (27 bp):
TCGCACACTTAGTGCAACATAGTCAAT
Found at i:27184124 original size:246 final size:246
Alignment explanation
Indices: 27183690--27184177 Score: 976
Period size: 246 Copynumber: 2.0 Consensus size: 246
27183680 TAGTCAAACC
27183690 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
1 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
27183755 TGCAACATAGTCGAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCT
66 TGCAACATAGTCGAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCT
27183820 CACGGTCATAAATGGTTATCCCGCACGTTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTC
131 CACGGTCATAAATGGTTATCCCGCACGTTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTC
27183885 TTTTCATTCATTCAACAATTTCATCATCACATACGTACATGCATATAGACT
196 TTTTCATTCATTCAACAATTTCATCATCACATACGTACATGCATATAGACT
27183936 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
1 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
27184001 TGCAACATAGTCGAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCT
66 TGCAACATAGTCGAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCT
27184066 CACGGTCATAAATGGTTATCCCGCACGTTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTC
131 CACGGTCATAAATGGTTATCCCGCACGTTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTC
27184131 TTTTCATTCATTCAACAATTTCATCATCACATACGTACATGCATATA
196 TTTTCATTCATTCAACAATTTCATCATCACATACGTACATGCATATA
27184178 TATATATGTA
Statistics
Matches: 242, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 242 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (246 bp):
CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
TGCAACATAGTCGAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCT
CACGGTCATAAATGGTTATCCCGCACGTTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTC
TTTTCATTCATTCAACAATTTCATCATCACATACGTACATGCATATAGACT
Found at i:27187878 original size:30 final size:29
Alignment explanation
Indices: 27187827--27187883 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
27187817 ATTTCAAATG
*
27187827 CTCACACGGCCTGAGACACGGGCGTGTCC
1 CTCACACGGCCTGACACACGGGCGTGTCC
*
27187856 CTCACACGGCCTGGACACACGGGTGTGT
1 CTCACACGGCCT-GACACACGGGCGTGT
27187884 GTCGCTTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (29 bp):
CTCACACGGCCTGACACACGGGCGTGTCC
Found at i:27200321 original size:46 final size:47
Alignment explanation
Indices: 27200235--27200455 Score: 179
Period size: 46 Copynumber: 4.7 Consensus size: 47
27200225 GGGGTAAGGT
*
27200235 GCCGATGCATTGTCCTAGACATGGTCTTACACT-GAC--ACATCTTGTA-
1 GCCGATGCA-TGTCCCAGACAT-GTCTTACACTAG-CTTACATCTTGTAG
* *
27200281 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTGTAG
* * * * ** *
27200327 GCCGATGCATGTCCCAAACATGTTTTACACTAGCTCT-C-GCCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTTGTAG
* * * ** *
27200373 GCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAATAT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTTGTAG
*
27200421 GTCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
27200456 CAAACAAGTG
Statistics
Matches: 141, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 70 0.50
47 26 0.18
48 19 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTGTAG
Found at i:27202714 original size:40 final size:40
Alignment explanation
Indices: 27202659--27202756 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
27202649 CGGATGATAA
* *
27202659 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CTGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
27202699 CTGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATAT
1 CTGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATAT
** *
27202739 C-CAGCTAAATCCCGAAGG
1 CTGGGCTAAGTCCCGAAGG
27202757 TACTTGGTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
39 16 0.31
40 36 0.69
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
CTGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATAT
Found at i:27206796 original size:27 final size:27
Alignment explanation
Indices: 27206766--27206839 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
27206756 ATATTGAGCC
* * *
27206766 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
* * *
27206793 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
27206820 CGCACACTTAGTGCTACATA
1 CGCACACTTAGTGCTACATA
27206840 GTTATTACTG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:27214727 original size:14 final size:14
Alignment explanation
Indices: 27214708--27214734 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27214698 TTTATAAATA
27214708 AAAAATAAAATGAT
1 AAAAATAAAATGAT
27214722 AAAAATAAAATGA
1 AAAAATAAAATGA
27214735 AATAAAAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (14 bp):
AAAAATAAAATGAT
Found at i:27215717 original size:45 final size:45
Alignment explanation
Indices: 27215657--27216087 Score: 258
Period size: 45 Copynumber: 9.4 Consensus size: 45
27215647 CTGCTCTGCC
* * * *
27215657 GCAACTTTAGAGAGATAAGATTTGCTATCTTGAGTCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCCACT
* * *
27215702 GCAACTTGAGGGAGATAAGACTCTG-TAATCTGT-AGGTTTGATCTACTCTACT
1 GCAACTTCAGGGAGATAAGA-TTTGCT-ATCT-TCA------ATCTACTCCACT
* * * **
27215754 GTAACTTCAGAGAGATAAGATTTAGTGCTGGTAGCTTCAATCTGTTCCACT
1 GCAACTTCAGGGAGATAAGA-TT--TGC---TATCTTCAATCTACTCCACT
** * * * *
27215805 GTTAGTTCAGGGAAATGAGATTTGCTATCTTCAGTCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCCACT
* * * *
27215850 ACAACTTCAGGGAGATAAGACTTG-T-GCTTCAACCTAC-CCTACT
1 GCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCC-ACT
* * ** * *
27215893 GCAACTTCAGGGGGATAA-AGTTTGCTATTTTCGTTCTATTCAACT
1 GCAACTTCAGGGAGATAAGA-TTTGCTATCTTCAATCTACTCCACT
* * * *
27215938 GCAAGTTCAGGGAGATAAGATCTG-TAACTCCAATCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCCACT
* * *
27215982 GTAACTTTAGGGAGATAAGACTTGGC--T-TT-AATCTACTCCACT
1 GCAACTTCAGGGAGATAAGA-TTTGCTATCTTCAATCTACTCCACT
* *
27216024 GTAACTTCAGGGAGA-AGAGATTTGTTATCTTC-ATCCTACTCCACT
1 GCAACTTCAGGGAGATA-AGATTTGCTATCTTCAAT-CTACTCCACT
27216069 GCAACTTCAGGGAGATAAG
1 GCAACTTCAGGGAGATAAG
27216088 GCACTGTAAT
Statistics
Matches: 291, Mismatches: 64, Indels: 62
0.70 0.15 0.15
Matches are distributed among these distances:
41 4 0.01
42 33 0.11
43 33 0.11
44 36 0.12
45 108 0.37
46 11 0.04
47 1 0.00
48 3 0.01
50 2 0.01
51 24 0.08
52 28 0.10
54 2 0.01
56 1 0.00
57 4 0.01
58 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (45 bp):
GCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCCACT
Found at i:27216096 original size:132 final size:132
Alignment explanation
Indices: 27215839--27216087 Score: 324
Period size: 131 Copynumber: 1.9 Consensus size: 132
27215829 CTATCTTCAG
27215839 TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTGCTTCAACCTACCCTACTGCAACTTCAGG
1 TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTGCTTCAACCTACCCTACTGCAACTTCAGG
* * * * * *
27215904 GGGATAAAGTTTGCTATTTTCGTTCTATTCAACTGCAAGTTCAGGGAGATAAGATCTGTAACTCC
66 GAGATAAAGTTTGCTATCTTCATCCTACTCAACTGCAACTTCAGGGAGATAAGATCTGTAACTCC
27215969 AA
131 AA
** * * * *
27215971 TCTACTCCACTGTAACTTTAGGGAGATAAGACTTG-GCTTTAATCTACTCC-ACTGTAACTTCAG
1 TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTGCTTCAACCTAC-CCTACTGCAACTTCAG
* * *
27216034 GGAGA-AGAGATTTGTTATCTTCATCCTACTCCACTGCAACTTCAGGGAGATAAG
65 GGAGATAAAG-TTTGCTATCTTCATCCTACTCAACTGCAACTTCAGGGAGATAAG
27216088 GCACTGTAAT
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
130 3 0.03
131 63 0.63
132 34 0.34
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (132 bp):
TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTGCTTCAACCTACCCTACTGCAACTTCAGG
GAGATAAAGTTTGCTATCTTCATCCTACTCAACTGCAACTTCAGGGAGATAAGATCTGTAACTCC
AA
Found at i:27221437 original size:31 final size:31
Alignment explanation
Indices: 27221399--27221485 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
27221389 ACAAATGACA
27221399 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
* * *
27221430 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
*
27221461 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
27221486 AAGTGACAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
Found at i:27221658 original size:49 final size:46
Alignment explanation
Indices: 27221507--27221717 Score: 198
Period size: 47 Copynumber: 4.6 Consensus size: 46
27221497 GATTTCCGTA
* * * * * * *
27221507 TAAGACCATATCTGGGATATGGCATCAGTGTGATATATGCTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCAATGTGATATGTGATTC-GTG
* * * * * * *
27221554 TAAGACCATATCTGAGATATGGCATCAGTGAGATATGTGATTTGCG
1 TAAGACCATAGCTGGGCTATGGCATCAATGTGATATGTGATTCGTG
27221600 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATC-A-ATGTGATATGTGATT-CGTG
* *
27221649 TAAGACCATAGCTGGGCTATGGCATCGA--T-ATATG-AATAT-GTG
1 TAAGACCATAGCTGGGCTATGGCATCAATGTGATATGTGAT-TCGTG
27221691 TAAGACCATAGCTGGGCTATGGCATCA
1 TAAGACCATAGCTGGGCTATGGCATCA
27221718 TTATGTAAAG
Statistics
Matches: 142, Mismatches: 18, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
42 29 0.20
43 2 0.01
44 6 0.04
45 1 0.01
46 24 0.17
47 39 0.27
48 13 0.09
49 28 0.20
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (46 bp):
TAAGACCATAGCTGGGCTATGGCATCAATGTGATATGTGATTCGTG
Found at i:27221692 original size:42 final size:42
Alignment explanation
Indices: 27221646--27221760 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 42
27221636 ATGTGATTAC
*
27221646 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATG-AATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGAT-TATGAAAGAT
27221688 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTAAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATG-AAAGAT
* **
27221730 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
27221761 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
40 4 0.06
41 2 0.03
42 59 0.89
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATGAAAGAT
Found at i:27223863 original size:26 final size:26
Alignment explanation
Indices: 27223824--27223931 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
27223814 TGGTACAAAT
27223824 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
27223850 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27223876 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27223902 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27223928 TGAT
1 TGAT
27223932 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27224072 original size:12 final size:12
Alignment explanation
Indices: 27224052--27224087 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
27224042 CCGAAAGTTA
*
27224052 GAGAAGAGAAAG
1 GAGAGGAGAAAG
27224064 GAGAGGAGAAAG
1 GAGAGGAGAAAG
27224076 GAGAGGAGAAAG
1 GAGAGGAGAAAG
27224088 CTCTTGAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (12 bp):
GAGAGGAGAAAG
Found at i:27225608 original size:27 final size:27
Alignment explanation
Indices: 27225568--27225762 Score: 231
Period size: 27 Copynumber: 7.2 Consensus size: 27
27225558 AGGAAGCGTC
*
27225568 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
27225595 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
27225621 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
27225649 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
27225675 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
27225703 CTAGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
27225730 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
27225757 CTGGTG
1 CTGGTG
27225763 ACTTCGTCAC
Statistics
Matches: 144, Mismatches: 13, Indels: 22
0.80 0.07 0.12
Matches are distributed among these distances:
26 14 0.10
27 123 0.85
28 7 0.05
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:27225647 original size:54 final size:54
Alignment explanation
Indices: 27225565--27225762 Score: 335
Period size: 54 Copynumber: 3.7 Consensus size: 54
27225555 TGGAGGAAGC
*
27225565 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
27225619 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
27225673 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
27225727 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
27225763 ACTTCGTCAC
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
53 6 0.04
54 132 0.96
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:27231046 original size:24 final size:24
Alignment explanation
Indices: 27230999--27231046 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
27230989 GGATTCTAGC
* ***
27230999 TAATTGCTCTTGCATCTGTGTTTG
1 TAATTGCTCTTGCATATCCCTTTG
27231023 TAATTGCTCTTGCATATCCCTTTG
1 TAATTGCTCTTGCATATCCCTTTG
27231047 CATTTGTTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.48
Consensus pattern (24 bp):
TAATTGCTCTTGCATATCCCTTTG
Found at i:27231206 original size:19 final size:20
Alignment explanation
Indices: 27231182--27231235 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
27231172 GTCTTTTTTG
* *
27231182 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGAA
27231201 TGAAATGTAATGCAAATGAA
1 TGAAATGTAATGCAAATGAA
27231221 TGAAATG-AATGCAAA
1 TGAAATGTAATGCAAA
27231236 AAGATGTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 24 0.75
20 8 0.25
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.28
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGAA
Found at i:27235087 original size:24 final size:26
Alignment explanation
Indices: 27235060--27235109 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27235050 CTAAGTAACC
*
27235060 TATA-AAAA-TGTAAAATGGATAATA
1 TATACAAAAGTGTAAAATAGATAATA
*
27235084 TATACAAAAGTTTAAAATAGATAATA
1 TATACAAAAGTGTAAAATAGATAATA
27235110 GATATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 4 0.18
26 14 0.64
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (26 bp):
TATACAAAAGTGTAAAATAGATAATA
Found at i:27235222 original size:25 final size:24
Alignment explanation
Indices: 27235194--27235264 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 24
27235184 TTAGACTAAC
27235194 TAATATATATAAAGTTTAAAATAGA
1 TAATATATATAAAGTTTAAAATA-A
**
27235219 TAATATATATAATAACTTAAAATAA
1 TAATATATATAA-AGTTTAAAATAA
27235244 T-ATATA-AT-AAGTTTAAAATAA
1 TAATATATATAAAGTTTAAAATAA
27235265 ACAATGTGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 10 0.24
22 1 0.02
23 2 0.05
24 5 0.12
25 14 0.34
26 9 0.22
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (24 bp):
TAATATATATAAAGTTTAAAATAA
Found at i:27235248 original size:20 final size:21
Alignment explanation
Indices: 27235223--27235264 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
27235213 AATAGATAAT
27235223 ATATATAATAA-CTTAAAATA
1 ATATATAATAAGCTTAAAATA
*
27235243 ATATATAATAAGTTTAAAATA
1 ATATATAATAAGCTTAAAATA
27235264 A
1 A
27235265 ACAATGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
ATATATAATAAGCTTAAAATA
Found at i:27238049 original size:23 final size:22
Alignment explanation
Indices: 27238012--27238073 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
27238002 CGAAAATTTT
*
27238012 AAATATTTATAAAATATTTTTTCCA
1 AAAT-TTTAT-AAATATTTATT-CA
* *
27238037 AAATTTTATAAATATATATTCG
1 AAATTTTATAAATATTTATTCA
27238059 AAATTTTA-AAATATT
1 AAATTTTATAAATATT
27238074 AAAAATTACT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.18
22 9 0.27
23 9 0.27
24 5 0.15
25 4 0.12
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (22 bp):
AAATTTTATAAATATTTATTCA
Found at i:27238804 original size:19 final size:20
Alignment explanation
Indices: 27238756--27238810 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
27238746 CAAGATATTC
* *
27238756 TTATAAACTTTGGTATTTGA
1 TTATAAATTTTGGTATTAGA
* *
27238776 TTAGAAATTTTTGTATTAG-
1 TTATAAATTTTGGTATTAGA
27238795 TTATAAATTTTGGTAT
1 TTATAAATTTTGGTAT
27238811 ATCAAAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.53
Consensus pattern (20 bp):
TTATAAATTTTGGTATTAGA
Found at i:27242042 original size:18 final size:17
Alignment explanation
Indices: 27242015--27242048 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
27242005 TATTTAAATC
*
27242015 TTGTGTTTATTCTTTCTG
1 TTGTGATTATT-TTTCTG
27242033 TTGTGATTATTTTTCT
1 TTGTGATTATTTTTCT
27242049 ACAAAATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.09, C:0.09, G:0.15, T:0.68
Consensus pattern (17 bp):
TTGTGATTATTTTTCTG
Found at i:27243413 original size:28 final size:28
Alignment explanation
Indices: 27243382--27243462 Score: 126
Period size: 28 Copynumber: 2.9 Consensus size: 28
27243372 GCCTATGTCT
*
27243382 CTCACACGGCCATGACACGCCTGTGCCC
1 CTCACACAGCCATGACACGCCTGTGCCC
* *
27243410 CTCACACAGCCATGACACGCCCGTGCCT
1 CTCACACAGCCATGACACGCCTGTGCCC
*
27243438 CTCACACATCCATGACACGCCTGTG
1 CTCACACAGCCATGACACGCCTGTG
27243463 TCCTAATTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.21, C:0.44, G:0.19, T:0.16
Consensus pattern (28 bp):
CTCACACAGCCATGACACGCCTGTGCCC
Done.