Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 79 of 235
Found at i:27244595 original size:49 final size:50
Alignment explanation
Indices: 27244521--27244741 Score: 252
Period size: 49 Copynumber: 4.5 Consensus size: 50
27244511 TAAAGTCCCG
* *
27244521 TGTCCCAGATAGGTCTTACATTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* * *
27244570 TGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* * * * *
27244619 TGTCCCAGATAGGTCATATACTGGCTCTCATCTATCG-GTGTCGATGCCA
1 TGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* * * * * *
27244668 TGTCCCAAATAGGCCTTACACTGGCTCTCATCTATC-AGTGTCAATGCCA
1 TGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* *
27244717 TGCCCCAGACAGGTCTTACACTGAC
1 TGTCCCAGATAGGTCTTACACTGAC
27244742 ACACAATAAG
Statistics
Matches: 149, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
48 1 0.01
49 148 0.99
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
TGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
Found at i:27244867 original size:46 final size:48
Alignment explanation
Indices: 27244759--27244876 Score: 177
Period size: 46 Copynumber: 2.5 Consensus size: 48
27244749 AAGCTGACGC
* *
27244759 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCCCAAAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATCCCAAAGCCGATG
* * *
27244807 CATGTCCCAGACATGTCTTACACTAGC-TCT-TGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATCCCAAAGCCGATG
27244853 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
27244877 GGCACTCATG
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
46 37 0.57
47 2 0.03
48 26 0.40
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTATATCCCAAAGCCGATG
Found at i:27252428 original size:49 final size:49
Alignment explanation
Indices: 27252364--27252489 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 49
27252354 ATTAAAGTCG
* * * *
27252364 ATGCCGTGTTCCAGACTGGTCTTACACTGACTTTCATATATCGAG-GTCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGTCA
* * * *
27252413 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATTGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCA
**
27252462 ATTTCATGTCCCAGACAGGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
27252490 AACACACAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
48 1 0.02
49 65 0.98
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCA
Found at i:27254276 original size:41 final size:41
Alignment explanation
Indices: 27254099--27254278 Score: 170
Period size: 41 Copynumber: 4.4 Consensus size: 41
27254089 TGAATTGTAT
* * * * *
27254099 ATACGTGCCCCTATTTGTACTTTGGTACCCTTGAATTGCAC
1 ATACATGCCCCTGTTTATACTTTGATACCCTTAAATTGCAC
* *
27254140 ATACATGCCCCTATTTAT-CTTTGATGTCCC-TAAATT--AC
1 ATACATGCCCCTGTTTATACTTTGAT-ACCCTTAAATTGCAC
* *
27254178 ATACATGTGCCCCTGTTTATACTTCGATACCCCTAAATTGCAC
1 ATACA--TGCCCCTGTTTATACTTTGATACCCTTAAATTGCAC
** * *
27254221 ATATGTGCCCCTGTTTGTACTTTGATACCCTTGAATTGCAC
1 ATACATGCCCCTGTTTATACTTTGATACCCTTAAATTGCAC
* *
27254262 CTACATGCCTCTGTTTA
1 ATACATGCCCCTGTTTA
27254279 CACTCTAGTA
Statistics
Matches: 113, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
38 7 0.06
40 26 0.23
41 75 0.66
43 5 0.04
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.37
Consensus pattern (41 bp):
ATACATGCCCCTGTTTATACTTTGATACCCTTAAATTGCAC
Found at i:27259913 original size:61 final size:61
Alignment explanation
Indices: 27259818--27260062 Score: 481
Period size: 61 Copynumber: 4.0 Consensus size: 61
27259808 AAAACTAAGA
*
27259818 TTGATTTGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
1 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
27259879 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
1 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
27259940 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
1 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
27260001 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
1 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
27260062 T
1 T
27260063 AGAGAATCAA
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 183 1.00
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.35
Consensus pattern (61 bp):
TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
Found at i:27261719 original size:21 final size:21
Alignment explanation
Indices: 27261677--27261714 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 21
27261667 TTGTTATTAT
27261677 TATTATTATTATTTCCTTTCC
1 TATTATTATTATTTCCTTTCC
27261698 TATTATT-TT-TTTCCTTT
1 TATTATTATTATTTCCTTT
27261715 TTCCTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 2 0.12
21 7 0.41
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (21 bp):
TATTATTATTATTTCCTTTCC
Found at i:27262943 original size:13 final size:13
Alignment explanation
Indices: 27262925--27262949 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27262915 GAGGCTCCTG
27262925 TGCTCCTTTGCTT
1 TGCTCCTTTGCTT
27262938 TGCTCCTTTGCT
1 TGCTCCTTTGCT
27262950 GATGGCTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.16, T:0.52
Consensus pattern (13 bp):
TGCTCCTTTGCTT
Found at i:27280630 original size:23 final size:23
Alignment explanation
Indices: 27280604--27280768 Score: 142
Period size: 23 Copynumber: 7.3 Consensus size: 23
27280594 TAATGAATAA
* * *
27280604 TAAGCTCTATTAAGCTAAAATGG
1 TAAGCTCTATCAAGCTGAAACGG
* **
27280627 TAAGCTCTATCAAGC-AAAACAA
1 TAAGCTCTATCAAGCTGAAACGG
* * *
27280649 TAAGCTCAAACGAGCTGAAACGG
1 TAAGCTCTATCAAGCTGAAACGG
* *
27280672 TAAGCTCTACCAAGCT--AACAG
1 TAAGCTCTATCAAGCTGAAACGG
*
27280693 TAAGCTC-ATACGAGCTGAAACGG
1 TAAGCTCTAT-CAAGCTGAAACGG
*
27280716 TAAGCTCTATCAAGCTGAAACGA
1 TAAGCTCTATCAAGCTGAAACGG
* *
27280739 TAAGCTCATAT-GAGCTGAAATGG
1 TAAGCTC-TATCAAGCTGAAACGG
27280762 TAAGCTC
1 TAAGCTC
27280769 CAATGAGATA
Statistics
Matches: 114, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
20 1 0.01
21 16 0.14
22 16 0.14
23 76 0.67
24 5 0.04
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (23 bp):
TAAGCTCTATCAAGCTGAAACGG
Found at i:27280709 original size:44 final size:44
Alignment explanation
Indices: 27280616--27280768 Score: 191
Period size: 44 Copynumber: 3.4 Consensus size: 44
27280606 AGCTCTATTA
* * * * *
27280616 AGCTAAAATGGTAAGCTCTATCAAGCAAAACAATAAGCTCAAACG
1 AGCTGAAACGGTAAGCTCTATCAAGC-TAACAGTAAGCTCATACG
*
27280661 AGCTGAAACGGTAAGCTCTACCAAGCTAACAGTAAGCTCATACG
1 AGCTGAAACGGTAAGCTCTATCAAGCTAACAGTAAGCTCATACG
*
27280705 AGCTGAAACGGTAAGCTCTATCAAGCTGAA-ACGATAAGCTCATATG
1 AGCTGAAACGGTAAGCTCTATCAAGCT-AACA-G-TAAGCTCATACG
*
27280751 AGCTGAAATGGTAAGCTC
1 AGCTGAAACGGTAAGCTC
27280769 CAATGAGATA
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
44 42 0.44
45 26 0.27
46 28 0.29
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (44 bp):
AGCTGAAACGGTAAGCTCTATCAAGCTAACAGTAAGCTCATACG
Found at i:27281189 original size:38 final size:38
Alignment explanation
Indices: 27281138--27281216 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
27281128 ATATCAAATT
27281138 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
1 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
27281176 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
1 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
27281214 AAC
1 AAC
27281217 ATTCATTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.35
Consensus pattern (38 bp):
AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
Found at i:27285395 original size:29 final size:29
Alignment explanation
Indices: 27285324--27285448 Score: 146
Period size: 29 Copynumber: 4.3 Consensus size: 29
27285314 AAGTCTACAT
*
27285324 ACATGCATATGGCCCA-CTAGGCCC-AATC
1 ACATTCATATGGCCCATC-AGGCCCAAATC
* *
27285352 TCATTCATATAGCCCATCAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * *
27285381 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * *
27285410 ACATTCATACGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
27285439 ACATTCATAT
1 ACATTCATAT
27285449 ACATGCTTTC
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 19 0.23
29 63 0.77
ACGTcount: A:0.31, C:0.32, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAAATC
Found at i:27285528 original size:17 final size:18
Alignment explanation
Indices: 27285506--27285540 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
27285496 TTCCTATTAT
*
27285506 GGGCCCAA-CAGCCCATC
1 GGGCCCAATAAGCCCATC
27285523 GGGCCCAATAAGCCCATC
1 GGGCCCAATAAGCCCATC
27285541 CTGGCCCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.43, G:0.23, T:0.09
Consensus pattern (18 bp):
GGGCCCAATAAGCCCATC
Found at i:27289794 original size:29 final size:29
Alignment explanation
Indices: 27289727--27289851 Score: 155
Period size: 29 Copynumber: 4.3 Consensus size: 29
27289717 AAGTCTACAT
*
27289727 ACATGCATATGGCCCA-CTAGGCCC-AATC
1 ACATTCATATGGCCCATC-AGGCCCAAATC
*
27289755 TCATTCATATGGCCCATCAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * *
27289784 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * *
27289813 ACATTCATACGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
27289842 ACATTCATAT
1 ACATTCATAT
27289852 ACATGCTTTC
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 20 0.24
29 64 0.76
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAAATC
Found at i:27297599 original size:25 final size:25
Alignment explanation
Indices: 27297556--27297624 Score: 111
Period size: 25 Copynumber: 2.7 Consensus size: 25
27297546 GAGGAAGTGC
*
27297556 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
*
27297582 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
27297607 AAAAGGGCTTTGCCCCAG
1 AAAAGGGCTTTGCCCCAG
27297625 CTATTAAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:27297639 original size:24 final size:25
Alignment explanation
Indices: 27297555--27297639 Score: 79
Period size: 25 Copynumber: 3.4 Consensus size: 25
27297545 GGAGGAAGTG
* *
27297555 CAAAAG-GGCTTTTGCCCCAGTTTAC
1 CAAAAGAGGC-TTTGCCCCAGTCTAT
*
27297580 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTCTAT
27297605 CAAAA-AGGGCTTTGCCCCAG-CTAT
1 CAAAAGA-GGCTTTGCCCCAGTCTAT
*
27297629 TAAAAGAGGCT
1 CAAAAGAGGCT
27297640 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
24 15 0.28
25 30 0.57
26 8 0.15
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTCTAT
Found at i:27297881 original size:30 final size:31
Alignment explanation
Indices: 27297847--27297990 Score: 213
Period size: 30 Copynumber: 4.7 Consensus size: 31
27297837 CGTTTACAGT
*
27297847 AAAGGCTTCGGCCCAGTGATATG-ATAACGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
27297877 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
27297908 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
27297938 AAAGGCTTCAGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
27297969 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
27297991 TTGAGATTAA
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
30 53 0.52
31 49 0.48
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:27297942 original size:61 final size:61
Alignment explanation
Indices: 27297847--27297990 Score: 263
Period size: 61 Copynumber: 2.4 Consensus size: 61
27297837 CGTTTACAGT
*
27297847 AAAGGCTTCGGCCCAGTGATATGATAACGAAAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGATAACGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
*
27297908 AAAGGCTTCGGCCCAGTGATATGATAATGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGATAACGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
27297969 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
27297991 TTGAGATTAA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
60 5 0.06
61 76 0.94
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (61 bp):
AAAGGCTTCGGCCCAGTGATATGATAACGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
Found at i:27307318 original size:55 final size:54
Alignment explanation
Indices: 27307223--27307372 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
27307213 CTACTTTGTT
* ** * *
27307223 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
27307277 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
27307332 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
27307373 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:27307335 original size:27 final size:27
Alignment explanation
Indices: 27307195--27307372 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
27307185 TAAATTGTAC
27307195 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
27307222 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
27307248 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
27307276 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
27307304 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
27307331 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
27307358 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27307373 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:27307336 original size:82 final size:81
Alignment explanation
Indices: 27307196--27307351 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
27307186 AAATTGTACA
* * * *
27307196 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
27307261 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
27307277 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
27307340 TGTGCGAGTTGA
63 TGTGCGAATTGA
27307352 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:27310776 original size:33 final size:34
Alignment explanation
Indices: 27310728--27310802 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
27310718 AGATTTAAAC
*
27310728 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTAAACTA
* *
27310762 AAATT-ATTTCTAACACTTATTTGAGCTAAACTA
1 AAATTAATTACTAACACTTATTTAAGCTAAACTA
*
27310795 AATTTAAT
1 AAATTAAT
27310803 AAACTAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
33 29 0.81
34 7 0.19
ACGTcount: A:0.43, C:0.13, G:0.05, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTAAACTA
Found at i:27314661 original size:5 final size:6
Alignment explanation
Indices: 27314632--27314676 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
27314622 AAAGGAAGAC
* * * *
27314632 AGAAAA AGAAAT CGAAAA AGAAAA AGAAAA AGAGAA TGAAAA AGA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGA
27314677 GTGAAAAGAG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.04
Consensus pattern (6 bp):
AGAAAA
Found at i:27316486 original size:33 final size:34
Alignment explanation
Indices: 27316449--27316520 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
27316439 GAGTTAGTTT
27316449 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
* * * *
27316482 ATTAATTTTAGTTTAGCTTATATAAGTGTTAGTA
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
27316516 ATTAA
1 ATTAA
27316521 TTTGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 28 0.82
34 6 0.18
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.43
Consensus pattern (34 bp):
ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:27325274 original size:11 final size:10
Alignment explanation
Indices: 27325258--27325296 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
27325248 AGTTTCTTCA
27325258 AAAAAAATTTC
1 AAAAAAA-TTC
27325269 AAAAAAAATTC
1 -AAAAAAATTC
*
27325280 AAAAAAAATC
1 AAAAAAATTC
27325290 AAAAAAA
1 AAAAAAA
27325297 AATTTGGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 16 0.62
11 3 0.12
12 7 0.27
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:27325284 original size:23 final size:21
Alignment explanation
Indices: 27325254--27325297 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 21
27325244 CAGTAGTTTC
27325254 TTCAAAAAAAATTTCAAAAAAAA
1 TTCAAAAAAAA--TCAAAAAAAA
27325277 TTCAAAAAAAATCAAAAAAAA
1 TTCAAAAAAAATCAAAAAAAA
27325298 ATTTGGTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.48
23 11 0.52
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (21 bp):
TTCAAAAAAAATCAAAAAAAA
Found at i:27325298 original size:12 final size:11
Alignment explanation
Indices: 27325254--27325297 Score: 72
Period size: 11 Copynumber: 4.0 Consensus size: 11
27325244 CAGTAGTTTC
27325254 TTCAAAAAAAA
1 TTCAAAAAAAA
27325265 TTTCAAAAAAAA
1 -TTCAAAAAAAA
27325277 TTCAAAAAAAA
1 TTCAAAAAAAA
27325288 -TCAAAAAAAA
1 TTCAAAAAAAA
27325298 ATTTGGTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.31
11 11 0.34
12 11 0.34
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (11 bp):
TTCAAAAAAAA
Found at i:27325359 original size:16 final size:16
Alignment explanation
Indices: 27325338--27325395 Score: 91
Period size: 15 Copynumber: 3.6 Consensus size: 16
27325328 GGTATCAAGT
27325338 TGAAAAAAAAAATTCG
1 TGAAAAAAAAAATTCG
27325354 TG-AAAAAAAAATTCG
1 TGAAAAAAAAAATTCG
27325369 TGAAAAAAAAAATTTTCG
1 TGAAAAAAAAAA--TTCG
27325387 TGAAAAAAA
1 TGAAAAAAA
27325396 GAAGAAGCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.38
16 11 0.28
18 13 0.33
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.21
Consensus pattern (16 bp):
TGAAAAAAAAAATTCG
Found at i:27325363 original size:18 final size:18
Alignment explanation
Indices: 27325340--27325395 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
27325330 TATCAAGTTG
27325340 AAAAAAAAAATTCGTG--
1 AAAAAAAAAATTCGTGAA
27325356 -AAAAAAAAATTCGTGAA
1 AAAAAAAAAATTCGTGAA
**
27325373 AAAAAAAATTTTCGTGAA
1 AAAAAAAAAATTCGTGAA
27325391 AAAAA
1 AAAAA
27325396 GAAGAAGCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 15 0.43
18 20 0.57
ACGTcount: A:0.64, C:0.05, G:0.11, T:0.20
Consensus pattern (18 bp):
AAAAAAAAAATTCGTGAA
Found at i:27330195 original size:56 final size:56
Alignment explanation
Indices: 27330109--27330228 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
27330099 ACAAGGGATG
27330109 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
27330165 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
27330221 ATGGGCAA
1 ATGGGCAA
27330229 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:27333781 original size:49 final size:49
Alignment explanation
Indices: 27333717--27333972 Score: 403
Period size: 49 Copynumber: 5.3 Consensus size: 49
27333707 AGACAAAGTG
* * *
27333717 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
27333766 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
27333815 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
27333864 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
27333911 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
27333960 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
27333973 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 50 0.26
48 1 0.01
49 144 0.74
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:27351526 original size:19 final size:19
Alignment explanation
Indices: 27351502--27351538 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
27351492 ATAAAATATT
27351502 ATCGTTCAGGTACATATAC
1 ATCGTTCAGGTACATATAC
*
27351521 ATCGTTCAGGTGCATATA
1 ATCGTTCAGGTACATATA
27351539 GAGGTCATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (19 bp):
ATCGTTCAGGTACATATAC
Found at i:27352539 original size:7 final size:7
Alignment explanation
Indices: 27352527--27352553 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
27352517 GAAAAAGAAA
27352527 AGAAGGG
1 AGAAGGG
27352534 AGAAGGG
1 AGAAGGG
27352541 AGAAGGG
1 AGAAGGG
27352548 AGAAGG
1 AGAAGG
27352554 AAATCAGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (7 bp):
AGAAGGG
Found at i:27352655 original size:15 final size:15
Alignment explanation
Indices: 27352631--27352660 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27352621 GGAGGGTAAA
*
27352631 ACAGAGAGCAAATCG
1 ACAGAAAGCAAATCG
27352646 ACAGAAAGCAAATCG
1 ACAGAAAGCAAATCG
27352661 GCCAAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.20, G:0.23, T:0.07
Consensus pattern (15 bp):
ACAGAAAGCAAATCG
Found at i:27353012 original size:16 final size:16
Alignment explanation
Indices: 27352993--27353023 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27352983 AAATCTTCAA
*
27352993 AAAAAATTAAAAAATC
1 AAAAAATAAAAAAATC
27353009 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
27353024 ACATTTTGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAAAATAAAAAAATC
Found at i:27353062 original size:29 final size:29
Alignment explanation
Indices: 27353023--27353130 Score: 112
Period size: 29 Copynumber: 3.8 Consensus size: 29
27353013 AATAAAAAAA
*
27353023 TACATTTTGACCCCTAAACTTTTTGAAAT
1 TACATATTGACCCCTAAACTTTTTGAAAT
* *
27353052 TATATATTGACCCCTAAACCTTTTGAAAT
1 TACATATTGACCCCTAAACTTTTTGAAAT
* * * * *
27353081 TACATTTTAACCCATAACCTTTTTAAAAT
1 TACATATTGACCCCTAAACTTTTTGAAAT
* *
27353110 TACATTTTTA-CCCTAAA-TTTT
1 TACATATTGACCCCTAAACTTTT
27353131 CTCAAAATTA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
27 4 0.06
28 5 0.08
29 57 0.86
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (29 bp):
TACATATTGACCCCTAAACTTTTTGAAAT
Found at i:27353137 original size:29 final size:29
Alignment explanation
Indices: 27353072--27353147 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
27353062 CCCCTAAACC
* *
27353072 TTTTGAAATTACATTTTAACCCATAACCT
1 TTTTAAAATTACATTTTAACCCATAACAT
*
27353101 TTTTAAAATTACATTTTTACCC-TAA-AT
1 TTTTAAAATTACATTTTAACCCATAACAT
*
27353128 TTTCTCAAAATTACGTTTTA
1 TTT-T-AAAATTACATTTTA
27353148 GCCCCAGAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 4 0.10
28 4 0.10
29 32 0.80
ACGTcount: A:0.34, C:0.17, G:0.03, T:0.46
Consensus pattern (29 bp):
TTTTAAAATTACATTTTAACCCATAACAT
Found at i:27353407 original size:22 final size:22
Alignment explanation
Indices: 27353382--27353427 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
27353372 AAAAGAAATA
* *
27353382 GAAGAGAAAAGAGAA-AGGAGAG
1 GAAGA-AAAAAAGAAGAGAAGAG
27353404 GAAGAAAAAAAGAAGAGAAGAG
1 GAAGAAAAAAAGAAGAGAAGAG
27353426 GA
1 GA
27353428 GAGCCTCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (22 bp):
GAAGAAAAAAAGAAGAGAAGAG
Found at i:27353516 original size:15 final size:15
Alignment explanation
Indices: 27353492--27353523 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
27353482 GGTTTTGAAG
*
27353492 AAGAAGAAAGAAAAA
1 AAGAAAAAAGAAAAA
27353507 AAGAAAAAAGAAAAA
1 AAGAAAAAAGAAAAA
27353522 AA
1 AA
27353524 AAATAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAGAAAAA
Found at i:27353519 original size:19 final size:18
Alignment explanation
Indices: 27353495--27353531 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
27353485 TTTGAAGAAG
27353495 AAGAAAGAAAAAAAGAAAA
1 AAGAAA-AAAAAAAGAAAA
*
27353514 AAGAAAAAAAAAATAAAA
1 AAGAAAAAAAAAAGAAAA
27353532 TATTATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (18 bp):
AAGAAAAAAAAAAGAAAA
Found at i:27353613 original size:6 final size:6
Alignment explanation
Indices: 27353594--27353629 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
27353584 CCAGCAGCCC
27353594 AAAA-A AAAAC- AAAACA AAAACA AAAACA AAAA-A AAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAA
27353630 GAGAAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 13 0.45
6 16 0.55
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:27353636 original size:17 final size:17
Alignment explanation
Indices: 27353594--27353629 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
27353584 CCAGCAGCCC
27353594 AAAA-AAAAACAAAACA
1 AAAACAAAAACAAAACA
27353610 AAAACAAAAACAAAA-A
1 AAAACAAAAACAAAACA
27353626 AAAA
1 AAAA
27353630 GAGAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAACAAAAACAAAACA
Found at i:27353826 original size:21 final size:21
Alignment explanation
Indices: 27353789--27353840 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
27353779 GGCCCAGCAG
*
27353789 AGAAAAAA-AAAG-AAAAAGA
1 AGAAAAAAGAAGGAAAAAAGA
*
27353808 AGAAAAAGAGAAGGAAAAAAGG
1 AGAAAAA-AGAAGGAAAAAAGA
27353830 AGAAAAAAGAA
1 AGAAAAAAGAA
27353841 AAAAGAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 7 0.25
20 1 0.04
21 7 0.25
22 13 0.46
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (21 bp):
AGAAAAAAGAAGGAAAAAAGA
Found at i:27353834 original size:31 final size:28
Alignment explanation
Indices: 27353790--27353847 Score: 71
Period size: 31 Copynumber: 2.0 Consensus size: 28
27353780 GCCCAGCAGA
27353790 GAAAAAAAAAGAAAAAGAAGAAAAAGAGAAG
1 GAAAAAAAAAG-AAAA-AAGAAAAA-AGAAG
**
27353821 GAAAAAAGGAGAAAAAAGAAAAAAGAA
1 GAAAAAAAAAGAAAAAAGAAAAAAGAA
27353848 AAAAGAGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.16
29 8 0.32
30 4 0.16
31 9 0.36
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (28 bp):
GAAAAAAAAAGAAAAAAGAAAAAAGAAG
Found at i:27353839 original size:29 final size:28
Alignment explanation
Indices: 27353793--27353847 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
27353783 CAGCAGAGAA
27353793 AAAAAAAGAAAAAGAAGAAAAAGAGAAGG
1 AAAAAAAGAAAAAGAAGAAAAA-AGAAGG
*
27353822 AAAAAAGGAGAAAA-AAGAAAAAAGAA
1 AAAAAAAGA-AAAAGAAGAAAAAAGAA
27353848 AAAAGAGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 4 0.17
29 16 0.67
30 4 0.17
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (28 bp):
AAAAAAAGAAAAAGAAGAAAAAAGAAGG
Found at i:27353849 original size:6 final size:7
Alignment explanation
Indices: 27353794--27353853 Score: 50
Period size: 7 Copynumber: 8.1 Consensus size: 7
27353784 AGCAGAGAAA
27353794 AAAAAAG
1 AAAAAAG
27353801 AAAAAGAAG
1 -AAAA-AAG
27353810 AAAAAGAG
1 AAAAA-AG
*
27353818 AAGGAAA-
1 AA-AAAAG
**
27353825 AAAGGAG
1 AAAAAAG
27353832 AAAAAAG
1 AAAAAAG
27353839 AAAAAAG
1 AAAAAAG
27353846 AAAAAAG
1 AAAAAAG
27353853 A
1 A
27353854 GGTTCAATTC
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
6 1 0.02
7 23 0.55
8 13 0.31
9 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:27353851 original size:9 final size:9
Alignment explanation
Indices: 27353792--27353844 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
27353782 CCAGCAGAGA
27353792 AAAAAAAAG
1 AAAAAAAAG
*
27353801 AAAAAGAAG
1 AAAAAAAAG
27353810 AAAAAGAGAAG
1 AAAAA-A-AAG
* *
27353821 GAAAAAAGG
1 AAAAAAAAG
*
27353830 AGAAAAAAG
1 AAAAAAAAG
27353839 AAAAAA
1 AAAAAA
27353845 GAAAAAAGAG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
9 26 0.76
10 1 0.03
11 7 0.21
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:27354023 original size:16 final size:16
Alignment explanation
Indices: 27354002--27354045 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
27353992 TATTTTTATC
27354002 TTTAATTTAATTTCAT
1 TTTAATTTAATTTCAT
* *
27354018 TTTAATTTTATTTTAT
1 TTTAATTTAATTTCAT
27354034 TTTAA-TTAATTT
1 TTTAATTTAATTT
27354046 TAATAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTAATTTAATTTCAT
Found at i:27354202 original size:15 final size:16
Alignment explanation
Indices: 27354170--27354202 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27354160 AAATATTCTA
*
27354170 AAATTCTCGCTTTTTT
1 AAATTCTCGCTGTTTT
27354186 AAATTCTCG-TGTTTT
1 AAATTCTCGCTGTTTT
27354201 AA
1 AA
27354203 TAGAATCACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (16 bp):
AAATTCTCGCTGTTTT
Found at i:27354702 original size:102 final size:102
Alignment explanation
Indices: 27354526--27354728 Score: 397
Period size: 102 Copynumber: 2.0 Consensus size: 102
27354516 TAAGACAACA
*
27354526 CGCGCTTAACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATACCTTCCTCGCGCGTAACCG
1 CGCGCTTAACAAGATACCAATTTTGGGCATCGCGAGGGTGCTAATACCTTCCTCGCGCGTAACCG
27354591 ACTCCCGAACTCGAATTTTCTCTGGATTTTTACGTGC
66 ACTCCCGAACTCGAATTTTCTCTGGATTTTTACGTGC
27354628 CGCGCTTAACAAGATACCAATTTTGGGCATCGCGAGGGTGCTAATACCTTCCTCGCGCGTAACCG
1 CGCGCTTAACAAGATACCAATTTTGGGCATCGCGAGGGTGCTAATACCTTCCTCGCGCGTAACCG
27354693 ACTCCCGAACTCGAATTTTCTCTGGATTTTTACGTG
66 ACTCCCGAACTCGAATTTTCTCTGGATTTTTACGTG
27354729 GACCTAAAAT
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (102 bp):
CGCGCTTAACAAGATACCAATTTTGGGCATCGCGAGGGTGCTAATACCTTCCTCGCGCGTAACCG
ACTCCCGAACTCGAATTTTCTCTGGATTTTTACGTGC
Found at i:27356764 original size:4 final size:4
Alignment explanation
Indices: 27356755--27356794 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
27356745 CATTTACTTG
* *
27356755 TCAT TCAT TCAT TCAT TCAT TCAT TAAT TCAT TTAT TCAT
1 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT
27356795 GTATTGCATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.53
Consensus pattern (4 bp):
TCAT
Found at i:27360786 original size:10 final size:10
Alignment explanation
Indices: 27360766--27360796 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
27360756 ATTATGCTTG
27360766 AACAA-AAAA
1 AACAACAAAA
27360775 AACAACAAAA
1 AACAACAAAA
27360785 AACAACAAAA
1 AACAACAAAA
27360795 AA
1 AA
27360797 AGAAAAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.24
10 16 0.76
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (10 bp):
AACAACAAAA
Found at i:27362551 original size:11 final size:11
Alignment explanation
Indices: 27362535--27362560 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
27362525 GTTAGACTTG
27362535 ATAAATAATTT
1 ATAAATAATTT
27362546 ATAAATAATTT
1 ATAAATAATTT
27362557 ATAA
1 ATAA
27362561 TTTTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
ATAAATAATTT
Found at i:27362562 original size:18 final size:17
Alignment explanation
Indices: 27362539--27362579 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
27362529 GACTTGATAA
*
27362539 ATAATTTATAAATAATTT
1 ATAATTTATAAA-AAATT
*
27362557 ATAATTTTTAAAAAATT
1 ATAATTTATAAAAAATT
27362574 ATAATT
1 ATAATT
27362580 AATTTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATTTATAAAAAATT
Found at i:27362809 original size:39 final size:40
Alignment explanation
Indices: 27362737--27362815 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 40
27362727 TGAAGCGCTT
*
27362737 TGTCCACGTGGACACAAAGCGCTCCCTCAAGGAAGCTTTTC
1 TGTCCACGTGGA-ACAAAGCGCTCCCTCAAGGAAGATTTTC
* **
27362778 TGTCCACGTGG-ACAAAGCGCTTCCTTGAGGAAGATTTT
1 TGTCCACGTGGAACAAAGCGCTCCCTCAAGGAAGATTTT
27362816 TTACTTCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 23 0.68
41 11 0.32
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
TGTCCACGTGGAACAAAGCGCTCCCTCAAGGAAGATTTTC
Found at i:27368880 original size:81 final size:82
Alignment explanation
Indices: 27367815--27369638 Score: 3036
Period size: 83 Copynumber: 22.3 Consensus size: 82
27367805 NNNNNNNNNN
27367815 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27367879 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
*
27367896 ATTTCTGTCTTTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCACG
1 ATTTCTGT-TTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
27367961 CTGAGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
*
27367979 ATTTCTGTCTTTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCACG
1 ATTTCTGT-TTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
27368044 CTGAGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
*
27368062 ATTTCTGTCTTTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCACG
1 ATTTCTGT-TTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
27368127 CTGAGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
*
27368145 ATTTCTGTCTTTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCACG
1 ATTTCTGT-TTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
27368210 CTGAGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
*
27368228 ATTTCTGTCTTTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCACG
1 ATTTCTGT-TTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
27368293 CTGAGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
*
27368311 ATTTCTGTCTTTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCACG
1 ATTTCTGT-TTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
27368376 CTGAGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
*
27368394 ATTTCTGTCTTTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCACG
1 ATTTCTGT-TTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
*
27368459 CTGTGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
27368477 ATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCAC
1 ATTTCTGTTTTTC--AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCAC
27368542 GCTGAGGTATTTCTTTTAA
64 GCTGAGGTATTTCTTTTAA
*
27368561 ATTTCTGTCTTTTCAAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCAC
1 ATTTCTGT-TTTTC-AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCAC
27368626 GCTGAGGTATTTCTTTTAA
64 GCTGAGGTATTTCTTTTAA
*
27368645 ATTTCTGTCTTTTCAAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCAC
1 ATTTCTGT-TTTTC-AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCAC
27368710 GCTGAGGTATTTCTTTTAA
64 GCTGAGGTATTTCTTTTAA
*
27368729 ATTTCTGTCTTTTCAAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGTCGCAC
1 ATTTCTGT-TTTTC-AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCAC
27368794 GCTGAGGTATTTCTTTTAA
64 GCTGAGGTATTTCTTTTAA
*
27368813 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGTACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27368877 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
* *
27368894 ATTTCTATTTTTCAAAAAAAATCAACTCATAATGCGAG-AGATGAGTTGAGCCTCGGGT--CACG
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGTCGCACG
27368956 CTGAGGTATTTCTTTTAA
65 CTGAGGTATTTCTTTTAA
* ** *
27368974 ATCTCTGTTTTTTGAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCGCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27369039 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
* *
27369056 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCTCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27369120 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
* *
27369137 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCTCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27369201 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
* *
27369218 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCTCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27369282 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
* *
27369299 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCTCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27369363 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
* *
27369380 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCTCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27369444 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
* *
27369461 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCTCACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
27369525 TGAGGTATTTCTTTTAA
66 TGAGGTATTTCTTTTAA
** * * *
27369542 ATTTCTGTTTTTC---AAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCGGGCCACACGC
1 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
* *
27369604 CGAGGTA----TTTTCA
66 TGAGGTATTTCTTTTAA
27369617 ATTTCTGTTTTTCAAATAAAAA
1 ATTTCTGTTTTTCAAA-AAAAA
27369639 GAAAATTTTT
Statistics
Matches: 1700, Mismatches: 29, Indels: 30
0.97 0.02 0.02
Matches are distributed among these distances:
75 18 0.01
79 54 0.03
80 71 0.04
81 572 0.34
82 83 0.05
83 577 0.34
84 320 0.19
85 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (82 bp):
ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
TGAGGTATTTCTTTTAA
Found at i:27369804 original size:7 final size:8
Alignment explanation
Indices: 27369785--27369815 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
27369775 AAAATCTTCA
*
27369785 AAAAAATT
1 AAAAAATC
27369793 AAAAAATC
1 AAAAAATC
27369801 AAAAAATC
1 AAAAAATC
27369809 AAAAAAT
1 AAAAAAT
27369816 ACATTTTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.16
Consensus pattern (8 bp):
AAAAAATC
Found at i:27369853 original size:29 final size:29
Alignment explanation
Indices: 27369815--27369880 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
27369805 AATCAAAAAA
*
27369815 TACATTTTGACCCCTAAACTTTTTGAAAT
1 TACATTTTGACCCCTAAACCTTTTGAAAT
*
27369844 TATATTTTGACCCCTAAACCTTTTGAAAT
1 TACATTTTGACCCCTAAACCTTTTGAAAT
27369873 TACATTTT
1 TACATTTT
27369881 AANNNNNNNN
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.44
Consensus pattern (29 bp):
TACATTTTGACCCCTAAACCTTTTGAAAT
Found at i:27372615 original size:78 final size:78
Alignment explanation
Indices: 27372486--27372642 Score: 260
Period size: 78 Copynumber: 2.0 Consensus size: 78
27372476 TGTTGATAAA
* *
27372486 GTGTGTAAGAGATGCCCTCTAATAATCCGAGAATCCTGTTTTCCGGCCGATTTGATGCTTTTACC
1 GTGTGTAAGAGATGCCCTCTAATAATCCGAAAATCCTGTTTTCCAGCCGATTTGATGCTTTTACC
*
27372551 ATTTGATGAATTT
66 ATTTGACGAATTT
* *
27372564 GTGTGTAAGAGATGCCCTCTAATAATCCGAAAATCCTGTTTTTCAGCCGATTTGATGCTTTTGCC
1 GTGTGTAAGAGATGCCCTCTAATAATCCGAAAATCCTGTTTTCCAGCCGATTTGATGCTTTTACC
*
27372629 GTTTGACGAATTT
66 ATTTGACGAATTT
27372642 G
1 G
27372643 ATGTTATTCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (78 bp):
GTGTGTAAGAGATGCCCTCTAATAATCCGAAAATCCTGTTTTCCAGCCGATTTGATGCTTTTACC
ATTTGACGAATTT
Found at i:27374429 original size:79 final size:80
Alignment explanation
Indices: 27374337--27374496 Score: 304
Period size: 79 Copynumber: 2.0 Consensus size: 80
27374327 AGCTCAGAAA
*
27374337 GTCGACGATGAATTGGTTGCAAAACGGGCTGAATGTATTCCGAATATGGAATCCGAATTTC-AAA
1 GTCGACGATGAATTGGTTGCAAAACGGGCTGAATGTATTCCGAATATGGAATCCAAATTTCAAAA
27374401 TTGATGATGACGATT
66 TTGATGATGACGATT
27374416 GTCGACGATGAATTGGTTGCAAAACGGGCTGAATGTATTCCGAATATGGAATCCAAATTTCAAAA
1 GTCGACGATGAATTGGTTGCAAAACGGGCTGAATGTATTCCGAATATGGAATCCAAATTTCAAAA
27374481 TTGATGATGACGATT
66 TTGATGATGACGATT
27374496 G
1 G
27374497 ATTGAGGTTC
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
79 60 0.76
80 19 0.24
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.29
Consensus pattern (80 bp):
GTCGACGATGAATTGGTTGCAAAACGGGCTGAATGTATTCCGAATATGGAATCCAAATTTCAAAA
TTGATGATGACGATT
Found at i:27386221 original size:27 final size:27
Alignment explanation
Indices: 27386186--27386269 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
27386176 GTGACAGGGT
27386186 CACCAGAACAGATAATAGTGGCAAAGC
1 CACCAGAACAGATAATAGTGGCAAAGC
27386213 CACCAGAACAGAT-ATATGTGGCAGAA-C
1 CACCAGAACAGATAATA-GTGGCA-AAGC
* * * *
27386240 CATCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATAATAGTGGCAAAGC
27386267 CAC
1 CAC
27386270 TAGGACGCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
26 4 0.08
27 40 0.83
28 4 0.08
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATAATAGTGGCAAAGC
Found at i:27391609 original size:29 final size:29
Alignment explanation
Indices: 27391543--27391601 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
27391533 TGGCCCATCT
*
27391543 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
* *
27391572 TATTCATATGGCCCATTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
27391601 C
1 C
27391602 CTTTATATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAAATCA
Found at i:27393737 original size:39 final size:39
Alignment explanation
Indices: 27393662--27393814 Score: 162
Period size: 39 Copynumber: 3.9 Consensus size: 39
27393652 AAATTCAATC
* * * * *
27393662 ACCAACACAAAGCCTACGGGACTTTAAGCCCGGATATGGT
1 ACCAGCACGAAGCCTAC-GGACCTTAAGTCCGGATATAGT
* *
27393702 ACCAGTACGAAGCCTACGGACCTTAAGTCCAGATATAGT
1 ACCAGCACGAAGCCTACGGACCTTAAGTCCGGATATAGT
* * * * *
27393741 ACAAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTACGGACCTTAAGTCCGGATATAGT
* * *
27393780 TCCAGCATGAAGCCTGCGGACCTTAAGTCCGGATA
1 ACCAGCACGAAGCCTACGGACCTTAAGTCCGGATA
27393815 CAATTCTAGC
Statistics
Matches: 95, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 81 0.85
40 14 0.15
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (39 bp):
ACCAGCACGAAGCCTACGGACCTTAAGTCCGGATATAGT
Found at i:27393792 original size:78 final size:79
Alignment explanation
Indices: 27393683--27393866 Score: 208
Period size: 78 Copynumber: 2.3 Consensus size: 79
27393673 GCCTACGGGA
*** * * * * *
27393683 CTTTAAGCCCGGATATGGTACCAGTACGAAGCCTACGGACCTTAAGTCCAGATATAGTACAAGCA
1 CTTTAAGCCCGGATACAATTCCAGCATGAAGCCTACGGACCTTAAGTCCAGATACAATACAAGCA
*
27393748 CGAAGCCTGCGGAT
66 AGAAGCCTGCGGAT
* * * * *
27393762 C-TTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCA
1 CTTTAAGCCCGGATACAATTCCAGCATGAAGCCTACGGACCTTAAGTCCAGATACAATACAAGCA
*
27393826 AGAAGCCTGCGGGT
66 AGAAGCCTGCGGAT
* *
27393840 CTTTAAGCCCGGATATAATTCTAGCAT
1 CTTTAAGCCCGGATACAATTCCAGCAT
27393867 ATAGCCTGTG
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 63 0.73
79 23 0.27
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (79 bp):
CTTTAAGCCCGGATACAATTCCAGCATGAAGCCTACGGACCTTAAGTCCAGATACAATACAAGCA
AGAAGCCTGCGGAT
Found at i:27393815 original size:39 final size:39
Alignment explanation
Indices: 27393710--27393874 Score: 179
Period size: 39 Copynumber: 4.2 Consensus size: 39
27393700 GTACCAGTAC
* * * * * * *
27393710 GAAGCCTACGGACCTTAAGTCCAGATATAGTACAAGCAC
1 GAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCAT
* *
27393749 GAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCAT
1 GAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCAT
*
27393788 GAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCAA
1 GAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCAT
* * * *
27393827 GAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCTAGCAT
1 GAAGCCTGC-GGACCTTAAGTCCGGATACAATTCTAGCAT
27393867 -ATAGCCTG
1 GA-AGCCTG
27393875 TGGGTCTTTA
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 77 0.71
40 31 0.29
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (39 bp):
GAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCAT
Found at i:27393860 original size:40 final size:40
Alignment explanation
Indices: 27393744--27393896 Score: 177
Period size: 40 Copynumber: 3.9 Consensus size: 40
27393734 ATATAGTACA
* * * *
27393744 AGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCC
1 AGCAAGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCT
* * * *
27393783 AGCATGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCT
1 AGCAAGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCT
*
27393822 AGCAAGAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCT
1 AGCAAGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCT
* *
27393862 AGCATA-TAGCCTGTGGGTCTTTAAGCCCGGATACA
1 AGCA-AGAAGCCTGCGGGTCTTTAAGCCCGGATACA
27393897 CATCAAGTAT
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 45 0.45
40 51 0.52
41 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (40 bp):
AGCAAGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCT
Found at i:27395915 original size:53 final size:53
Alignment explanation
Indices: 27395857--27396016 Score: 311
Period size: 53 Copynumber: 3.0 Consensus size: 53
27395847 AAAATCACCA
27395857 AGGCCAAATATCAAAGAGCCCTTTTGTTCTACCTTCGATTTTGAGCTTGTTCC
1 AGGCCAAATATCAAAGAGCCCTTTTGTTCTACCTTCGATTTTGAGCTTGTTCC
27395910 AGGCCAAATATCAAAGAGCCCTTTTGTTCTACCTTCGATTTTGAGCTTGTTCC
1 AGGCCAAATATCAAAGAGCCCTTTTGTTCTACCTTCGATTTTGAGCTTGTTCC
*
27395963 AGGCCAAATATCAAAGAGCCCTTTTGTTCTACCTTCGATTTTGAGCTTGCTCC
1 AGGCCAAATATCAAAGAGCCCTTTTGTTCTACCTTCGATTTTGAGCTTGTTCC
27396016 A
1 A
27396017 TTGCCGAAAT
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 106 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
AGGCCAAATATCAAAGAGCCCTTTTGTTCTACCTTCGATTTTGAGCTTGTTCC
Found at i:27397193 original size:29 final size:29
Alignment explanation
Indices: 27397160--27397217 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
27397150 ATCTTCACGC
27397160 CACTTCCAACCTTCTAGAAGGCCAAAATT
1 CACTTCCAACCTTCTAGAAGGCCAAAATT
27397189 CACTTCCAACCTTCTAGAAGGCCAAAATT
1 CACTTCCAACCTTCTAGAAGGCCAAAATT
27397218 AAACTTCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.10, T:0.24
Consensus pattern (29 bp):
CACTTCCAACCTTCTAGAAGGCCAAAATT
Found at i:27397528 original size:16 final size:15
Alignment explanation
Indices: 27397504--27397537 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
27397494 AAAAGAAAAA
27397504 TTTGAGTTTTCAGGAT
1 TTTGAG-TTTCAGGAT
*
27397520 TTTGGGTTTCAGGAT
1 TTTGAGTTTCAGGAT
27397535 TTT
1 TTT
27397538 TGGGGTGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.15, C:0.06, G:0.26, T:0.53
Consensus pattern (15 bp):
TTTGAGTTTCAGGAT
Found at i:27403701 original size:29 final size:28
Alignment explanation
Indices: 27403622--27403708 Score: 88
Period size: 29 Copynumber: 3.1 Consensus size: 28
27403612 ACCCATACAT
*
27403622 ACATGCATATGGCCCACTT-GGCCC-ATC
1 ACATTCATATGGCCCA-TTAGGCCCAATC
* * * *
27403649 TCATTCATATGGCCTATCAAGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TC
27403678 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
27403707 AC
1 AC
27403709 CTTTATATTC
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
26 1 0.02
27 17 0.36
28 1 0.02
29 26 0.55
30 2 0.04
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:27403951 original size:16 final size:16
Alignment explanation
Indices: 27403926--27403968 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
27403916 GTAGCCAAAC
*
27403926 TTTCAGCTTTTCGGCA
1 TTTCAACTTTTCGGCA
*
27403942 TTTCTACTTTTCGGCA
1 TTTCAACTTTTCGGCA
27403958 TTTCAACTTTT
1 TTTCAACTTTT
27403969 TCCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.14, C:0.23, G:0.12, T:0.51
Consensus pattern (16 bp):
TTTCAACTTTTCGGCA
Found at i:27408584 original size:26 final size:26
Alignment explanation
Indices: 27408550--27408675 Score: 102
Period size: 26 Copynumber: 5.0 Consensus size: 26
27408540 GAGCTTTTAA
* *
27408550 TTAATGGCTCTTCATGAGCTTCCTGT
1 TTAAAGGCTCTTCGTGAGCTTCCTGT
*
27408576 TTAAAGGCTCTTCGTGAGCTTCCTGA
1 TTAAAGGCTCTTCGTGAGCTTCCTGT
* * * * *
27408602 TTAAAAGTTTTTTGTGAACTTCC---
1 TTAAAGGCTCTTCGTGAGCTTCCTGT
* *
27408625 TAAAAGGCTCTTTGTGAGCTTCCTGAT
1 TTAAAGGCTCTTCGTGAGCTTCCTG-T
*
27408652 TT--AGGCTCTT-ATGAGCTTCCTGT
1 TTAAAGGCTCTTCGTGAGCTTCCTGT
27408675 T
1 T
27408676 ATTGCTTGGA
Statistics
Matches: 81, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
23 20 0.25
24 11 0.14
25 8 0.10
26 41 0.51
27 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (26 bp):
TTAAAGGCTCTTCGTGAGCTTCCTGT
Found at i:27413837 original size:40 final size:40
Alignment explanation
Indices: 27413778--27414045 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
27413768 GAGCATTGGA
*
27413778 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
27413818 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
27413858 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
27413898 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
27413938 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
27413978 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
27414018 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
27414046 ATGTGTTTGC
Statistics
Matches: 221, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:27421807 original size:40 final size:40
Alignment explanation
Indices: 27421763--27421986 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
27421753 AAGTGAATAT
* * * * **
27421763 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
27421803 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
27421843 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
27421883 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
27421923 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
27421962 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
27421987 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:27421861 original size:80 final size:80
Alignment explanation
Indices: 27421724--27421986 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
27421714 TTGAATGCTG
* * * * *
27421724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
27421786 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
27421804 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
27421869 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
27421884 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
27421948 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
27421963 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
27421987 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:27421938 original size:120 final size:120
Alignment explanation
Indices: 27421724--27421986 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
27421714 TTGAATGCTG
* * *
27421724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
27421788 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
27421844 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
27421906 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
27421963 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
27421987 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:27434483 original size:24 final size:24
Alignment explanation
Indices: 27434410--27434487 Score: 86
Period size: 24 Copynumber: 3.2 Consensus size: 24
27434400 GGACTCACCA
* *
27434410 CAGCTCGTATGAGCTTACCAATATGT
1 CAGCTCGTAAGAGCTTACC-AT-TTT
*
27434436 CAGCTCGTAAGAGCTTACTATTTT
1 CAGCTCGTAAGAGCTTACCATTTT
* *
27434460 CAGCTCGTCAGAGCTTACCGTTTT
1 CAGCTCGTAAGAGCTTACCATTTT
27434484 -AGCT
1 CAGCT
27434488 TAATAGAGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
23 4 0.09
24 23 0.50
25 2 0.04
26 17 0.37
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACCATTTT
Found at i:27441826 original size:202 final size:203
Alignment explanation
Indices: 27441479--27441882 Score: 765
Period size: 202 Copynumber: 2.0 Consensus size: 203
27441469 ATTTTAACTG
* **
27441479 CCTCGAAGCATAAGCCAGGACTTTTCCTTCTTGCATAAGTACACATCCTAAGCCATTTCAAGAAG
1 CCTCGAAACATAAGCCACCACTTTTCCTTCTTGCATAAGTACACATCCTAAGCCATTTCAAGAAG
27441544 CATCACTATACACCACAAATTCTTTACCTGATTCGGGTTGTATCAACACTGGTGCTTCAGTTAAT
66 CATCACTATACACCACAAATTCTTTACCTGATTCGGGTTGTATCAACACTGGTGCTTCAGTTAAT
27441609 AACTTTTTCAATTCTTCGAAACTCTGTTGACATTCTTCCGTCCATTCAAATTTAACATCCTTTCG
131 AACTTTTTCAATTCTTCGAAACTCTGTTGACATTCTTCCGTCCATTCAAATTTAACATCCTTTCG
27441674 GAGTAGTA
196 GAGTAGTA
*
27441682 CCTCGAAACATAAGCCACCACTTTTCCTTCTTGCATAA-TACACATCCTAAGCCATTTCGAGAAG
1 CCTCGAAACATAAGCCACCACTTTTCCTTCTTGCATAAGTACACATCCTAAGCCATTTCAAGAAG
27441746 CATCACTATACACCACAAATTCTTTACCTGATTCGGGTTGTATCAACACTGGTGCTTCAGTTAAT
66 CATCACTATACACCACAAATTCTTTACCTGATTCGGGTTGTATCAACACTGGTGCTTCAGTTAAT
27441811 AACTTTTTCAATTCTTCGAAACTCTGTTGACATTCTTCCGTCCATTCAAATTTAACATCCTTTCG
131 AACTTTTTCAATTCTTCGAAACTCTGTTGACATTCTTCCGTCCATTCAAATTTAACATCCTTTCG
27441876 GAGTAGT
196 GAGTAGT
27441883 CTAGTCATAG
Statistics
Matches: 197, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
202 162 0.82
203 35 0.18
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (203 bp):
CCTCGAAACATAAGCCACCACTTTTCCTTCTTGCATAAGTACACATCCTAAGCCATTTCAAGAAG
CATCACTATACACCACAAATTCTTTACCTGATTCGGGTTGTATCAACACTGGTGCTTCAGTTAAT
AACTTTTTCAATTCTTCGAAACTCTGTTGACATTCTTCCGTCCATTCAAATTTAACATCCTTTCG
GAGTAGTA
Found at i:27444312 original size:21 final size:21
Alignment explanation
Indices: 27444288--27444329 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
27444278 TCATCAGATT
*
27444288 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
27444309 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
27444330 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:27457321 original size:29 final size:29
Alignment explanation
Indices: 27457254--27457378 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
27457244 AAGTCTACAT
* *
27457254 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
27457282 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
27457311 ACATTCGTATGGCCCATTAGGCGCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
27457340 ACATTCATACGACCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
27457369 GCATTCATAT
1 ACATTCATAT
27457379 ACATGCTTTC
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 21 0.25
29 62 0.75
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:27464058 original size:18 final size:18
Alignment explanation
Indices: 27464035--27464070 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
27464025 GTTTAAATGG
*
27464035 TTAGTTTGAGAAAGAGGA
1 TTAGTTTGAGAAAAAGGA
27464053 TTAGTTTGAGAAAAAGGA
1 TTAGTTTGAGAAAAAGGA
27464071 CTAAATCGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.31, T:0.28
Consensus pattern (18 bp):
TTAGTTTGAGAAAAAGGA
Found at i:27465275 original size:25 final size:25
Alignment explanation
Indices: 27465245--27465309 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
27465235 GTTTACCATT
*
27465245 TCAGCTCAATAGAGCTTACT-ATCCA
1 TCAGCTCAAAAGAGCTTACTGAT-CA
* * *
27465270 TCAGCTTAGGAGGAGCTTACTGATCA
1 TCAGCTCA-AAAGAGCTTACTGATCA
27465296 T-AGCTCAAAAGAGC
1 TCAGCTCAAAAGAGC
27465310 GAAAATGATA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
24 5 0.16
25 12 0.39
26 12 0.39
27 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (25 bp):
TCAGCTCAAAAGAGCTTACTGATCA
Found at i:27465465 original size:19 final size:19
Alignment explanation
Indices: 27465441--27465495 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
27465431 TATGTGTTCA
27465441 GATGAATTACTGTTATATG
1 GATGAATTACTGTTATATG
* *
27465460 GATGAAGTACTGTTTAAATG
1 GATGAATTACTG-TTATATG
* *
27465480 GATGAGTTACTATTAT
1 GATGAATTACTGTTAT
27465496 CTAATGGATG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.33, C:0.05, G:0.22, T:0.40
Consensus pattern (19 bp):
GATGAATTACTGTTATATG
Found at i:27465482 original size:20 final size:19
Alignment explanation
Indices: 27465441--27465484 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
27465431 TATGTGTTCA
* *
27465441 GATGAATTACTGTTATATG
1 GATGAAGTACTGTTAAATG
27465460 GATGAAGTACTGTTTAAATG
1 GATGAAGTACTG-TTAAATG
27465480 GATGA
1 GATGA
27465485 GTTACTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (19 bp):
GATGAAGTACTGTTAAATG
Found at i:27472481 original size:27 final size:26
Alignment explanation
Indices: 27472432--27472508 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 26
27472422 TTAGAATACT
* *
27472432 TTAGTTTACTAAAATTACCGAAACACGC
1 TTAGTTT-GTAAAATTACTGAAACAC-C
* *
27472460 TTAGTTTGTAAAAATACTGAAATACC
1 TTAGTTTGTAAAATTACTGAAACACC
* *
27472486 CTCGATTTGTAAAATTACTGAAA
1 TTAG-TTTGTAAAATTACTGAAA
27472509 TACTTTCGAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.07
27 31 0.76
28 7 0.17
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (26 bp):
TTAGTTTGTAAAATTACTGAAACACC
Found at i:27472509 original size:27 final size:27
Alignment explanation
Indices: 27472464--27472547 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
27472454 ACACGCTTAG
*
27472464 TTTGTAAAAATACTGAAATACCCTCGA
1 TTTGTAAAATTACTGAAATACCCTCGA
**
27472491 TTTGTAAAATTACTGAAATACTTTCGA
1 TTTGTAAAATTACTGAAATACCCTCGA
* * *
27472518 CTTGTAAAATTAC-CAAAGTACCCCCGA
1 TTTGTAAAATTACTGAAA-TACCCTCGA
27472545 TTT
1 TTT
27472548 ACAGAATTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.06
27 44 0.94
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
TTTGTAAAATTACTGAAATACCCTCGA
Found at i:27472555 original size:27 final size:27
Alignment explanation
Indices: 27472525--27472583 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
27472515 CGACTTGTAA
27472525 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
****
27472552 AATTACCGTTTTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
27472579 AATTA
1 AATTA
27472584 TCGTTTTACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:27472588 original size:27 final size:27
Alignment explanation
Indices: 27472536--27472745 Score: 255
Period size: 27 Copynumber: 7.8 Consensus size: 27
27472526 ATTACCAAAG
* *
27472536 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
*
27472563 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* *
27472590 TACCC-CTGATTTACATAATTATCATTT
1 TACCCTC-GATTTACAGAATTATCGTTT
*
27472617 TACCCTCGACTTACAGAATTA-CTGTTT
1 TACCCTCGATTTACAGAATTATC-GTTT
*
27472644 TACCCTTGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* * *
27472671 TACCCTTGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* *
27472698 TACCCTTGATTTACAAAATTA-CTGTTT
1 TACCCTCGATTTACAGAATTATC-GTTT
*
27472725 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
27472746 CTAAAATACC
Statistics
Matches: 164, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
26 2 0.01
27 160 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTATCGTTT
Found at i:27472757 original size:81 final size:81
Alignment explanation
Indices: 27472536--27472745 Score: 303
Period size: 81 Copynumber: 2.6 Consensus size: 81
27472526 ATTACCAAAG
* * * *
27472536 TACCCCCGATTTACAGAATTACCGTTTTACCCCCGATTTACAGAATTATCGTTTTACCCCTGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATT
*
27472601 TACATAATTATCATTT
66 TACAGAATTATCATTT
* *
27472617 TACCCTCGACTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATT
* **
27472682 TATAGAATTATTGTTT
66 TACAGAATTATCATTT
* * *
27472698 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTA
27472746 CTAAAATACC
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 114 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATT
TACAGAATTATCATTT
Found at i:27472926 original size:27 final size:27
Alignment explanation
Indices: 27472617--27472922 Score: 120
Period size: 27 Copynumber: 11.3 Consensus size: 27
27472607 ATTATCATTT
* * * ***
27472617 TACCCTCGACTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* ***
27472644 TACCCTTGATTTACAGAATTA-TCGTTT
1 TACCCTTGATTTACAAAATTACT-GAAA
* * * ***
27472671 TACCCTTGATTTATAGAATTATTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
***
27472698 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* *
27472725 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * ** *
27472752 TACCCTAG-TCTGTAAAATTAC-CAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* *** *
27472777 TTACCAC-TGGTTTGTGAAATTACCGAAA
1 -TACC-CTTGATTTACAAAATTACTGAAA
** ** **
27472805 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * * *
27472832 TACCCCTAATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
27472859 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACT-GAAA
* *
27472888 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
27472915 TACCCTTG
1 TACCCTTG
27472923 GTTTGTAGAT
Statistics
Matches: 227, Mismatches: 39, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
25 3 0.01
26 17 0.07
27 178 0.78
28 11 0.05
29 18 0.08
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTGAAA
Found at i:27473003 original size:27 final size:27
Alignment explanation
Indices: 27472971--27473039 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
27472961 GACTAAAATA
*
27472971 CCCCTATTA-GGTAAAAAGACCGTAAGG
1 CCCCTA-TAGGGTAAAAAGACCGTAAAG
*
27472998 CCCCTATAGGGTAAAGAGACCGTAAAG
1 CCCCTATAGGGTAAAAAGACCGTAAAG
*
27473025 CCCCTGTAGGGTAAA
1 CCCCTATAGGGTAAA
27473040 GTGACCGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:27473040 original size:27 final size:27
Alignment explanation
Indices: 27472980--27473066 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
27472970 ACCCCTATTA
* * *
27472980 GGTAAAAAGACCGTAAGGCCCCTATAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
27473007 GGTAAAGAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
* * *
27473034 GGTAAAGTGACCGGAATA-CCCCTGTAT
1 GGTAAAGAGACCGTAA-AGCCCCTGTAG
27473061 GGTAAA
1 GGTAAA
27473067 ATGACGAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.17
Consensus pattern (27 bp):
GGTAAAGAGACCGTAAAGCCCCTGTAG
Found at i:27473734 original size:25 final size:25
Alignment explanation
Indices: 27473705--27473752 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
27473695 TTATAACATG
* * *
27473705 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
27473730 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
27473753 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:27473918 original size:24 final size:23
Alignment explanation
Indices: 27473866--27474010 Score: 191
Period size: 24 Copynumber: 6.1 Consensus size: 23
27473856 TTGGGTTTTT
*
27473866 GGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATAAAA
27473889 GGGCTTATGCCCCAGTTATCAAAA
1 GGGCTTATGCCCCAGTTAT-AAAA
*
27473913 GGGCTTATGCCCTAGTTATCAAAA
1 GGGCTTATGCCCCAGTTAT-AAAA
* * *
27473937 GGGCTTACGCCCCAATTATTAAA
1 GGGCTTATGCCCCAGTTATAAAA
27473960 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTA-TAAAA
* *
27473984 GGGATTTTGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTA-TAAAA
27474008 GGG
1 GGG
27474011 GCTAGGCCTC
Statistics
Matches: 109, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
23 38 0.35
24 71 0.65
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
GGGCTTATGCCCCAGTTATAAAA
Found at i:27473920 original size:47 final size:46
Alignment explanation
Indices: 27473866--27474010 Score: 191
Period size: 47 Copynumber: 3.1 Consensus size: 46
27473856 TTGGGTTTTT
27473866 GGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAA
1 GGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-AAAA
* * * * *
27473913 GGGCTTATGCCCTAGTTATCAAAAGGGCTTACGCCCCAATTATTAAA
1 GGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATAAAA
* *
27473960 GGGCTTATGCCCCAGTTATTAAAAGGGATTTTGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTA-TAAAA
27474008 GGG
1 GGG
27474011 GCTAGGCCTC
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
47 56 0.67
48 27 0.33
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (46 bp):
GGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAA
Found at i:27473984 original size:71 final size:71
Alignment explanation
Indices: 27473866--27474010 Score: 227
Period size: 71 Copynumber: 2.0 Consensus size: 71
27473856 TTGGGTTTTT
* * * *
27473866 GGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTA
1 GGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTA
27473931 TCAAAA
66 TCAAAA
* *
27473937 GGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGATTTTGCCCCAGTTA
1 GGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTA
*
27474002 TTAAAA
66 TCAAAA
27474008 GGG
1 GGG
27474011 GCTAGGCCTC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (71 bp):
GGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTA
TCAAAA
Found at i:27475899 original size:24 final size:24
Alignment explanation
Indices: 27475854--27475924 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
27475844 CTATCATATG
* *
27475854 AGTCGATATTGGCACTAAGTGTGCGG
1 AGTCGA-A-TGGCACTATGTGTGCGA
* *
27475880 ATTTGAATGGCACTATGTGTGCGA
1 AGTCGAATGGCACTATGTGTGCGA
27475904 AGTCGAATGGCACTATGTGTG
1 AGTCGAATGGCACTATGTGTG
27475925 TCGGCTTGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 34 0.87
25 1 0.03
26 4 0.10
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (24 bp):
AGTCGAATGGCACTATGTGTGCGA
Found at i:27475935 original size:24 final size:22
Alignment explanation
Indices: 27475863--27475935 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 22
27475853 GAGTCGATAT
*
27475863 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGG--TTGAA
*
27475887 TGGCACTATGTGTGCGAAGTCGAA
1 TGGCACTATGTGTGCG--GTTGAA
27475911 TGGCACTATGTGTGTCGGCTTGAA
1 TGGCACTATGTGTG-CGG-TTGAA
27475935 T
1 T
27475936 ATCAATACAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
23 1 0.02
24 38 0.90
25 2 0.05
26 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.30
Consensus pattern (22 bp):
TGGCACTATGTGTGCGGTTGAA
Found at i:27478610 original size:19 final size:20
Alignment explanation
Indices: 27478586--27478624 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
27478576 TCCCATTATT
27478586 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
27478605 TATTTATTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
27478625 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:27478642 original size:25 final size:23
Alignment explanation
Indices: 27478586--27478660 Score: 70
Period size: 19 Copynumber: 3.4 Consensus size: 23
27478576 TCCCATTATT
*
27478586 TATTTATTTTT-TGTTTT-AA--
1 TATTTATTTTTATATTTTAAATG
*
27478605 TATTTATTTTTATGTTTTAAATG
1 TATTTATTTTTATATTTTAAATG
27478628 TATTTGATTTATTATATTTTAAA-G
1 TATTT-ATTT-TTATATTTTAAATG
*
27478652 TTTTTATTT
1 TATTTATTT
27478661 AATAAAAAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
19 11 0.23
20 6 0.12
21 2 0.04
23 9 0.19
24 9 0.19
25 11 0.23
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (23 bp):
TATTTATTTTTATATTTTAAATG
Found at i:27478972 original size:24 final size:24
Alignment explanation
Indices: 27478944--27478989 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
27478934 TATACGTGGA
27478944 ATTTAATTTTTATACTTTTTAAGG
1 ATTTAATTTTTATACTTTTTAAGG
* *
27478968 ATTTAATTTTTCTATTTTTTAA
1 ATTTAATTTTTATACTTTTTAA
27478990 ATTTAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (24 bp):
ATTTAATTTTTATACTTTTTAAGG
Found at i:27484501 original size:26 final size:26
Alignment explanation
Indices: 27484472--27484523 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
27484462 GTTAAAAAGA
27484472 AATAGATCCATTTCTATGGTCATAGT
1 AATAGATCCATTTCTATGGTCATAGT
27484498 AATAGATCCATTTCTATGGTCATAGT
1 AATAGATCCATTTCTATGGTCATAGT
27484524 CTCCTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (26 bp):
AATAGATCCATTTCTATGGTCATAGT
Found at i:27490501 original size:23 final size:23
Alignment explanation
Indices: 27490474--27490539 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
27490464 AGACAACATT
* * * *
27490474 GAATACACTACATAGGCATTGTA
1 GAATACACCACAAAAGCATTATA
27490497 GAATACACCACAAAAGCATTATA
1 GAATACACCACAAAAGCATTATA
*
27490520 GAATA-AGCCACATAAGCATT
1 GAATACA-CCACAAAAGCATT
27490540 GCAAAATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 1 0.03
23 36 0.97
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.21
Consensus pattern (23 bp):
GAATACACCACAAAAGCATTATA
Found at i:27490554 original size:46 final size:46
Alignment explanation
Indices: 27490483--27490639 Score: 192
Period size: 46 Copynumber: 3.4 Consensus size: 46
27490473 TGAATACACT
* * * *
27490483 ACATAGGCATTGTAGAATACACCACAAAAGCATTATAGAATAAGCC
1 ACATAGGCATTGCAAAATACGCCACAAAAGCATTACAGAATAAGCC
* * *
27490529 ACATAAGCATTGCAAAATATGCCACAAAAGAATTACATG-ATAAGCC
1 ACATAGGCATTGCAAAATACGCCACAAAAGCATTACA-GAATAAGCC
* * *
27490575 ACATAGGCATTTCAAAATACGCCAC-AAAGCATTACAAAATATGCC
1 ACATAGGCATTGCAAAATACGCCACAAAAGCATTACAGAATAAGCC
*
27490620 ACATAGGCATTGCAGAATAC
1 ACATAGGCATTGCAAAATAC
27490640 TCCATAATGG
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
45 34 0.36
46 59 0.63
47 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.20
Consensus pattern (46 bp):
ACATAGGCATTGCAAAATACGCCACAAAAGCATTACAGAATAAGCC
Found at i:27490674 original size:23 final size:23
Alignment explanation
Indices: 27490498--27490693 Score: 135
Period size: 23 Copynumber: 8.6 Consensus size: 23
27490488 GGCATTGTAG
* * * *
27490498 AATACACCACAAAAGCATTATAG
1 AATACGCCACAAAGGCATTACAA
* *
27490521 AATAAGCCACATAA-GCATTGCAA
1 AATACGCCACA-AAGGCATTACAA
* * * *
27490544 AATATGCCACAAAAGAATTACAT
1 AATACGCCACAAAGGCATTACAA
* * * *
27490567 GATAAGCCACATAGGCATTTCAA
1 AATACGCCACAAAGGCATTACAA
27490590 AATACGCCACAAA-GCATTACAA
1 AATACGCCACAAAGGCATTACAA
* * * *
27490612 AATATGCCACATAGGCATTGCAG
1 AATACGCCACAAAGGCATTACAA
* * * *
27490635 AATACTCCATAATGGCATTAAAA
1 AATACGCCACAAAGGCATTACAA
* * *
27490658 AATACGCTACAAAGGCATTATAG
1 AATACGCCACAAAGGCATTACAA
*
27490681 AATATGCCACAAA
1 AATACGCCACAAA
27490694 AGCTTCACAA
Statistics
Matches: 130, Mismatches: 40, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
22 21 0.16
23 107 0.82
24 2 0.02
ACGTcount: A:0.46, C:0.21, G:0.13, T:0.20
Consensus pattern (23 bp):
AATACGCCACAAAGGCATTACAA
Found at i:27493342 original size:15 final size:15
Alignment explanation
Indices: 27493321--27493355 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
27493311 ACTCTTTAAG
27493321 CTTTAGTTTAATGCA
1 CTTTAGTTTAATGCA
* *
27493336 TTTTAGTTTATTGCA
1 CTTTAGTTTAATGCA
27493351 CTTTA
1 CTTTA
27493356 AATCTATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.54
Consensus pattern (15 bp):
CTTTAGTTTAATGCA
Found at i:27499753 original size:46 final size:46
Alignment explanation
Indices: 27499611--27499823 Score: 177
Period size: 46 Copynumber: 4.5 Consensus size: 46
27499601 TAAACTGCTA
* * * * **
27499611 ATGCCATGTCCCAAACATGGTCTTACACAGGCTCTAGCATATCTGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACA-G-ACTA-CGTCTC-AAGCCG
* * *
27499661 ATGCCATGTCCCAGACATGGTCTTACGCTGAC-ACATCTCATAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGACTACGTCTCA-AGCCG
*
27499707 ATG-CATGTCCCAGACAT-GTCTTACACAGACTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGAC-TACGTCTC-AAGCCG
* * *
27499753 ATG-CATGTCCTAGAAAT-GTCTTACACTAGCACT-CGTCCCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAC-AG-ACTACGTCTCAA-GCCG
27499799 ATGCCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
27499824 GACTAGCTCT
Statistics
Matches: 137, Mismatches: 17, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 58 0.42
47 17 0.12
48 9 0.07
49 1 0.01
50 26 0.19
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGACTACGTCTCAAGCCG
Found at i:27503818 original size:35 final size:35
Alignment explanation
Indices: 27503778--27503936 Score: 165
Period size: 35 Copynumber: 4.5 Consensus size: 35
27503768 GTATGTACAT
27503778 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
27503813 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
27503848 ATGTGATGTTTTATTGAGCTTGTATATTTGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
27503883 ATATGATGACATATTGCACTTGTATATTTAGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* *
27503918 ATGTGATGACATAATGAAC
1 ATGTGATGATATATTGAAC
27503937 CTTGAGTATT
Statistics
Matches: 100, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 100 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:27523262 original size:46 final size:44
Alignment explanation
Indices: 27523157--27523374 Score: 170
Period size: 46 Copynumber: 4.7 Consensus size: 44
27523147 GCATATCAGT
* * * *
27523157 GCCGATGCCATGTCCCAGACATGGTCTTACGCTGACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACTCGTCTCG-AG
*
27523203 GCCAATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAAC-T-CGTCTCGAG
* * * *
27523249 GCCGATGCATGTCCTAGACATGTTTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTA--ACTCGTCTCGAG
* * * ** * *
27523295 GCCGATGCCATGTCCCATACATGGCCTTACATTGGCTC-TCCTAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACTCGT-CT--CGAG
27523343 GCCGATGCATGTCCCAGACATGTCTTACACTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTA
27523375 GCTCACAATA
Statistics
Matches: 137, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 68 0.50
47 26 0.19
48 16 0.12
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAACTCGTCTCGAG
Found at i:27529050 original size:20 final size:21
Alignment explanation
Indices: 27529018--27529056 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
27529008 CTGCATTTTG
27529018 AAAATTTTCATAT-TTTCCCT
1 AAAATTTTCATATGTTTCCCT
27529038 AAAA-TTTCTATATGTTTCC
1 AAAATTTTC-ATATGTTTCC
27529057 AATTTAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 8 0.47
21 5 0.29
ACGTcount: A:0.31, C:0.18, G:0.03, T:0.49
Consensus pattern (21 bp):
AAAATTTTCATATGTTTCCCT
Found at i:27539486 original size:40 final size:39
Alignment explanation
Indices: 27539455--27539664 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
27539445 GGACTAAGAT
* *
27539455 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
27539495 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
27539535 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
27539575 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
27539615 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
27539654 CCGAAGGCATT
1 CCGAAGGCATT
27539665 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:27539618 original size:120 final size:120
Alignment explanation
Indices: 27539402--27539664 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
27539392 TTGAATGCTG
* *
27539402 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
27539466 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
27539522 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
27539585 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
27539641 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
27539665 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:27539684 original size:79 final size:80
Alignment explanation
Indices: 27539403--27539699 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
27539393 TGAATGCTGT
* ** * * * **
27539403 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
27539466 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
27539483 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
27539547 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
27539563 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
27539627 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
27539642 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
27539700 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:27541524 original size:42 final size:43
Alignment explanation
Indices: 27541457--27541545 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 43
27541447 GGGTTCGCTA
* * *
27541457 AGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATATG
1 AGATTACGTGAAAGACCATAGCTGGGATATTGACATCGATATG
* * * *
27541499 AGATTTCGTGAAAGACTATAGCTGGGCTATTGACATTGATATG
1 AGATTACGTGAAAGACCATAGCTGGGATATTGACATCGATATG
27541542 AGAT
1 AGAT
27541546 CCCATGTAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 24 0.62
43 15 0.38
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (43 bp):
AGATTACGTGAAAGACCATAGCTGGGATATTGACATCGATATG
Found at i:27541584 original size:42 final size:41
Alignment explanation
Indices: 27541465--27541584 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 41
27541455 TAAGATTACG
* ** *
27541465 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCG
1 TGTAAGA-CATATCTGGGATATGGCATTGATATGAGATCCCA
* * * *
27541507 TGAAAGACTATAGCTGGGCTATTGACATTGATATGAGATCCCA
1 TGTAAGAC-ATATCTGGGATA-TGGCATTGATATGAGATCCCA
* *
27541550 TGTAAGATCATATTTGGGATATGGCATTGTTATGA
1 TGTAAGA-CATATCTGGGATATGGCATTGATATGA
27541585 TACTATGTAT
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
41 1 0.02
42 28 0.46
43 31 0.51
44 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (41 bp):
TGTAAGACATATCTGGGATATGGCATTGATATGAGATCCCA
Found at i:27544058 original size:46 final size:46
Alignment explanation
Indices: 27543995--27544164 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
27543985 ACAACGTTTA
27543995 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAG
* * * *
27544041 GCTGATGCATGTCCCAGACATGTCTTACACTAGC--ACTGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA-TGTCTCGAG
* * ** *
27544086 GCGGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCAT-AAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGTCTCGAG
27544134 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
27544165 AGCTCACACA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
44 1 0.01
45 13 0.13
46 55 0.53
47 25 0.24
48 6 0.06
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAG
Found at i:27544143 original size:93 final size:91
Alignment explanation
Indices: 27543998--27544167 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 91
27543988 ACGTTTAGCC
** *
27543998 GATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGCTGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTATGAATCGAGGCCGATGCATGTCCCAGACATG
27544063 TCTTACACTAGCACTGTCTCAATGCG
66 TCTTACACTAGCACTGTCTCAATGCG
* *
27544089 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCAT-AAT-GTGGCCGATGCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGAATCGAGGCCGATGCATGTCCCAGA
27544152 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
27544168 TCACACAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
91 4 0.06
92 14 0.20
93 48 0.69
94 2 0.03
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTATGAATCGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCACTGTCTCAATGCG
Found at i:27546113 original size:27 final size:26
Alignment explanation
Indices: 27546083--27546167 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
27546073 ATTACCAAAG
*
27546083 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATA-AATTACCGTTT
* *
27546110 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTA-TAAATTACCGTTT
*
27546137 TACCCTC-AGTT-TAAATTACCGTTT
1 TACCCTCGATTTATAAATTACCGTTT
27546161 TACCCTC
1 TACCCTC
27546168 AAATATAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
24 18 0.35
26 3 0.06
27 29 0.57
28 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.07, T:0.40
Consensus pattern (26 bp):
TACCCTCGATTTATAAATTACCGTTT
Found at i:27546128 original size:54 final size:51
Alignment explanation
Indices: 27546056--27546167 Score: 125
Period size: 54 Copynumber: 2.1 Consensus size: 51
27546046 ATTACTGAAA
** * *
27546056 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTC-AGTT-TA-AATTACCGTTT
* ***
27546110 TACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTAAATTACCGTTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCAGTTTAAATTACCGTTT
27546161 TACCCTC
1 TACCCTC
27546168 AAATATAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
51 17 0.34
52 2 0.04
53 3 0.06
54 28 0.56
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (51 bp):
TACCCTCGACTTACAAAATTACCAAAGTACCCTCAGTTTAAATTACCGTTT
Found at i:27546161 original size:24 final size:26
Alignment explanation
Indices: 27546083--27546181 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 26
27546073 ATTACCAAAG
*
27546083 TACCCTC-GATTTATAGAATTATCGTTT
1 TACCCTCAGATTTA-A-AATTACCGTTT
*
27546110 TACCCTC-GATTTACAAAATTACCATTT
1 TACCCTCAGATTT--AAAATTACCGTTT
27546137 TACCCTCAG-TTT-AAATTACCGTTT
1 TACCCTCAGATTTAAAATTACCGTTT
* *
27546161 TACCCTCAAATATAAAATTAC
1 TACCCTCAGATTTAAAATTAC
27546182 TGAAATACCC
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
24 19 0.31
25 2 0.03
26 7 0.11
27 31 0.50
28 2 0.03
29 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.38
Consensus pattern (26 bp):
TACCCTCAGATTTAAAATTACCGTTT
Found at i:27546309 original size:27 final size:28
Alignment explanation
Indices: 27546223--27546309 Score: 72
Period size: 27 Copynumber: 3.1 Consensus size: 28
27546213 ATACCCCTGA
*
27546223 TTTACAAAATTAC-AGAAATACCCTTGACT
1 TTTACAAAATTACTAGAAATACCCTT-A-G
** * * *
27546252 TTTTTAAAATTTA-TAGGAATACCATTGG
1 TTTACAAAA-TTACTAGAAATACCCTTAG
27546280 TTTACAAAATTACTA-AAATACCCTTAG
1 TTTACAAAATTACTAGAAATACCCTTAG
27546307 TTT
1 TTT
27546310 GTAGATTTAC
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
27 15 0.34
28 9 0.20
29 7 0.16
30 13 0.30
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (28 bp):
TTTACAAAATTACTAGAAATACCCTTAG
Done.