Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 84 of 235
Found at i:29175080 original size:46 final size:46
Alignment explanation
Indices: 29175030--29175202 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
29175020 TGGTTGAGCA
*
29175030 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
29175076 TCCGAGCTCGTTGAATTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
29175123 TCCGAACTCGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
29175169 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
29175203 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 57 0.56
47 26 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:29175188 original size:93 final size:93
Alignment explanation
Indices: 29175027--29175197 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
29175017 GGATGGTTGA
* *
29175027 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAAT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTTGAAT
29175092 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
29175120 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAGCTCGTTGAA
29175184 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
29175198 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTTGAAT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:29175755 original size:27 final size:27
Alignment explanation
Indices: 29175717--29175771 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
29175707 TGTGTAAATA
29175717 ATTTTATGATATGACCATGTTTGGTTG
1 ATTTTATGATATGACCATGTTTGGTTG
29175744 ATTTTATGATATGACCATGTTTGGTTG
1 ATTTTATGATATGACCATGTTTGGTTG
29175771 A
1 A
29175772 GAAAATGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.47
Consensus pattern (27 bp):
ATTTTATGATATGACCATGTTTGGTTG
Found at i:29180905 original size:40 final size:40
Alignment explanation
Indices: 29180729--29180951 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
29180719 TCCTCGTTCA
* * * * *
29180729 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
29180768 AATGCCTTCGGGACATAACCCGAATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
29180808 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
29180848 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
29180888 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
29180928 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29180952 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 36 0.23
40 114 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:29185883 original size:93 final size:93
Alignment explanation
Indices: 29185714--29185884 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
29185704 GGATGGTTGA
* *
29185714 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTTGAGT
29185779 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** * *
29185807 GCATCCGAACTCGTTGAGTTGAGTTTGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAGCTCGTTGAG
* *
29185871 TTTAGTCTGAGTTC
65 TTGAGTCCGAGTTC
29185885 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:29189440 original size:47 final size:47
Alignment explanation
Indices: 29189180--29190363 Score: 1996
Period size: 47 Copynumber: 25.1 Consensus size: 47
29189170 GAAATGATAG
* *
29189180 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* * *
29189229 TAAGGCCTAAT-GGCAATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* * *
29189277 TAAGGCCTAAT-GGCAATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* *
29189325 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* *
29189373 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189420 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189467 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189514 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189561 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189608 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189655 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189702 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189749 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189796 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189843 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189890 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189937 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29189984 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29190031 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29190078 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29190125 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
29190172 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
29190219 TAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
29190266 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * * * * * * * * **
29190313 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
29190360 TAAG
1 TAAG
29190364 TCCCGAAGGG
Statistics
Matches: 1106, Mismatches: 27, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
47 942 0.85
48 120 0.11
49 44 0.04
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:29190538 original size:37 final size:37
Alignment explanation
Indices: 29190482--29190560 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
29190472 CCGAGCTCTA
* *
29190482 AAGACCCGATGACTACGTGT-GAGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
29190519 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
29190556 AAGAC
1 AAGAC
29190561 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 35 0.92
38 3 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:29191996 original size:20 final size:20
Alignment explanation
Indices: 29191971--29192010 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
29191961 GCTTAATGAG
29191971 TCTATTTTCATGTGGATTGA
1 TCTATTTTCATGTGGATTGA
29191991 TCTATTTTCATGTGGATTGA
1 TCTATTTTCATGTGGATTGA
29192011 ACAAAACAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (20 bp):
TCTATTTTCATGTGGATTGA
Found at i:29198572 original size:21 final size:21
Alignment explanation
Indices: 29198548--29198589 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
29198538 TCATCAGATC
* *
29198548 TACACTTTGAGGCATCGGGGG
1 TACACGTTGAGGAATCGGGGG
*
29198569 TACAGGTTGAGGAATCGGGGG
1 TACACGTTGAGGAATCGGGGG
29198590 AGGCGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.43, T:0.21
Consensus pattern (21 bp):
TACACGTTGAGGAATCGGGGG
Found at i:29200467 original size:29 final size:30
Alignment explanation
Indices: 29200424--29200482 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
29200414 ATTTAATACG
*
29200424 AACTTTGGCAAAATTACA-TTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
29200453 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
29200483 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:29200575 original size:12 final size:12
Alignment explanation
Indices: 29200558--29200583 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
29200548 TATGGCAACA
29200558 TCAAATTCACAC
1 TCAAATTCACAC
29200570 TCAAATTCACAC
1 TCAAATTCACAC
29200582 TC
1 TC
29200584 TAACATGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (12 bp):
TCAAATTCACAC
Found at i:29202443 original size:25 final size:25
Alignment explanation
Indices: 29202415--29202519 Score: 97
Period size: 25 Copynumber: 4.2 Consensus size: 25
29202405 TCTCTCTCTC
*
29202415 GAGCCATATAACGGGAAACTCATAT
1 GAGCCATATAACGGGAAGCTCATAT
* * *
29202440 GAGCCATGTAACGGGATGCTTAT-T
1 GAGCCATATAACGGGAAGCTCATAT
* * *
29202464 CGGGCTATATAACGGGAAGCTCATAA
1 -GAGCCATATAACGGGAAGCTCATAT
* * *
29202490 GAGCCATA-ATCAGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATAT
29202514 GAGCCA
1 GAGCCA
29202520 ATAGCAGGTA
Statistics
Matches: 62, Mismatches: 16, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
24 19 0.31
25 43 0.69
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATAT
Found at i:29202527 original size:24 final size:24
Alignment explanation
Indices: 29202478--29202533 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
29202468 CTATATAACG
*
29202478 GGAAGCTCATAAGAGCCATAATCA
1 GGAAGCTCATAAGAGCCATAAGCA
**
29202502 GGAAGCTCATGTGAGCCA-ATAGCA
1 GGAAGCTCATAAGAGCCATA-AGCA
*
29202526 GGTAGCTC
1 GGAAGCTC
29202534 TCAAAAGCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAAGCA
Found at i:29202625 original size:26 final size:26
Alignment explanation
Indices: 29202586--29202654 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
29202576 CCATATCGGG
*
29202586 AAGCTC-CGAAGAGCCATTAATCAGA
1 AAGCTCACAAAGAGCCATTAATCAGA
* * *
29202611 AAGCTCACAAAGAGCCTTTAATCTGG
1 AAGCTCACAAAGAGCCATTAATCAGA
29202637 AAGCTCACAAAGAGCCAT
1 AAGCTCACAAAGAGCCAT
29202655 ATATCGAGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
25 6 0.16
26 32 0.84
ACGTcount: A:0.39, C:0.25, G:0.19, T:0.17
Consensus pattern (26 bp):
AAGCTCACAAAGAGCCATTAATCAGA
Found at i:29205318 original size:20 final size:18
Alignment explanation
Indices: 29205271--29205377 Score: 60
Period size: 20 Copynumber: 5.8 Consensus size: 18
29205261 CAAGATAAAC
29205271 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
29205288 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
29205308 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
29205327 ATTAAAATAAGTA-TT-AT
1 ATTAAATTAA-TATTTAAT
* *
29205344 ATTAAATTTAATATTGACCT
1 ATTAAA-TTAATATTTA-AT
*
29205364 ATTAAAATAATATT
1 ATTAAATTAATATT
29205378 CATTTTGGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
17 17 0.25
18 6 0.09
19 22 0.32
20 24 0.35
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:29208829 original size:24 final size:24
Alignment explanation
Indices: 29208778--29208829 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
29208768 GAACTCTACT
* **
29208778 TTTTTACCTTTTACGATTTAGTTT
1 TTTTTACCTTTTACGATTTAATCC
29208802 TTTTTACCTTTTACGATTTAATCC
1 TTTTTACCTTTTACGATTTAATCC
29208826 TTTT
1 TTTT
29208830 CACTTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.15, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTTTACCTTTTACGATTTAATCC
Found at i:29211888 original size:18 final size:19
Alignment explanation
Indices: 29211865--29211907 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
29211855 CAACTAAAAT
29211865 TTTTAATATTT-TTAT-ACA
1 TTTTAAT-TTTATTATCACA
29211883 TTTTAATTTTATTATGCACA
1 TTTTAATTTTATTAT-CACA
29211903 TTTTA
1 TTTTA
29211908 TTATCTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
20 8 0.36
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAATTTTATTATCACA
Found at i:29214269 original size:11 final size:9
Alignment explanation
Indices: 29214227--29214286 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
29214217 GCCATCCTTC
29214227 TTTT-GTTT
1 TTTTAGTTT
29214235 TTTTAG-TT
1 TTTTAGTTT
* *
29214243 TTTAACTTT
1 TTTTAGTTT
29214252 TTTTAGTTT
1 TTTTAGTTT
29214261 TATTATAGTTAT
1 T-TT-TAGTT-T
29214273 TTTTAGTTT
1 TTTTAGTTT
29214282 TTTTA
1 TTTTA
29214287 AAAATTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 10 0.23
9 17 0.40
10 7 0.16
11 7 0.16
12 2 0.05
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (9 bp):
TTTTAGTTT
Found at i:29216365 original size:39 final size:40
Alignment explanation
Indices: 29216240--29216424 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
29216230 GCTACTCGTT
*
29216240 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
29216280 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
29216320 CCAATGCCTTCGGG-CTTAGCCGGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
29216359 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
29216400 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
29216425 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:29216384 original size:79 final size:80
Alignment explanation
Indices: 29216242--29216424 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
29216232 TACTCGTTCA
* *
29216242 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
29216307 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
29216322 AATGCCTTCGGG-CTTAGCCGGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
29216384 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
29216401 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
29216425 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 4 0.05
79 58 0.66
80 26 0.30
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:29220359 original size:13 final size:13
Alignment explanation
Indices: 29220341--29220373 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
29220331 TATAGAGTTA
29220341 CACGGGCTAAGGG
1 CACGGGCTAAGGG
29220354 CACGGGCTAAGGG
1 CACGGGCTAAGGG
*
29220367 CATGGGC
1 CACGGGC
29220374 GTGTCCTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.21, C:0.24, G:0.45, T:0.09
Consensus pattern (13 bp):
CACGGGCTAAGGG
Found at i:29221926 original size:68 final size:70
Alignment explanation
Indices: 29221854--29221983 Score: 167
Period size: 71 Copynumber: 1.9 Consensus size: 70
29221844 ATACTATGTA
* * * *
29221854 GTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CCATGTAGACAAGAGAGCTACGAGAGAG
1 GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGA-CACCATGTAGACAAGAGAGCTACGAGAGAG
29221916 ATAAAT
65 ATAAAT
* *
29221922 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGCGTGATT-CAAGGGAAGGACACCATGTAGACAAGAGAGCTACGAGA
29221984 CAAATTGGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
68 19 0.37
69 1 0.02
70 1 0.02
71 31 0.60
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGACACCATGTAGACAAGAGAGCTACGAGAGAGA
TAAAT
Found at i:29223892 original size:89 final size:91
Alignment explanation
Indices: 29223680--29223885 Score: 265
Period size: 89 Copynumber: 2.3 Consensus size: 91
29223670 CGCTAAAAAG
29223680 AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACAAGTTTACAAAAAAA
1 AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACAAG-TT--AAAAAAA
* * **
29223745 ATGTACAATACACTTGTGGCACCATTCTT
63 AGGAACAATACACCAGTGGCACCATTCTT
* * *
29223774 AATGTCTCCACAAAATAAAATATTATTTTTATATTTAAATT-AAAAAATCACA-TT-AAAAAAAG
1 AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACA-AGTTAAAAAAAAG
**
29223836 GAACAATACACCAGTGGTGCCATTCTT
65 GAACAATACACCAGTGGCACCATTCTT
*
29223863 AATGGCTTCACCAAATAAAATAT
1 AATGGCTCCACCAAATAAAATAT
29223886 GTTTTTTTTA
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
89 49 0.49
92 2 0.02
93 8 0.08
94 40 0.40
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (91 bp):
AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACAAGTTAAAAAAAAGG
AACAATACACCAGTGGCACCATTCTT
Found at i:29227870 original size:14 final size:13
Alignment explanation
Indices: 29227837--29227877 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
29227827 TTTAAAACTC
29227837 CTTTAAAAGAAAA
1 CTTTAAAAGAAAA
*
29227850 C-TTAAAAGAAATT
1 CTTTAAAAGAAA-A
29227863 CTTTAAAAGAAAA
1 CTTTAAAAGAAAA
29227876 CT
1 CT
29227878 CAAAGAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 10 0.42
13 4 0.17
14 10 0.42
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (13 bp):
CTTTAAAAGAAAA
Found at i:29230636 original size:40 final size:41
Alignment explanation
Indices: 29230592--29230672 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
29230582 TTATAAATAG
*
29230592 CACTATGTGTGCGA-AATG-GAATAGCTTCAGCTATATGAGA
1 CACTAGGTGTGCGATAATGAG-ATAGCTTCAGCTATATGAGA
* * *
29230632 CACTAGGTGTGCGATACTGAGGTAGCTTCAGCTATTTGAGA
1 CACTAGGTGTGCGATAATGAGATAGCTTCAGCTATATGAGA
29230673 TGTCACTAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 13 0.37
41 21 0.60
42 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (41 bp):
CACTAGGTGTGCGATAATGAGATAGCTTCAGCTATATGAGA
Found at i:29235151 original size:46 final size:46
Alignment explanation
Indices: 29235084--29235205 Score: 190
Period size: 46 Copynumber: 2.7 Consensus size: 46
29235074 CGCCCCTAAG
* * * *
29235084 TGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
29235130 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
29235176 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
29235206 TGCTCAACCA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:29237668 original size:30 final size:30
Alignment explanation
Indices: 29237602--29237677 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
29237592 CAAGAAAACC
* *
29237602 GAATAAAGAAATCCAATATAGAGAAACCTG
1 GAATAAAGAAATCCAATAAAGAGAAACCAG
*
29237632 GAATAAAGAAATCCAGAATAAAGAG-ATCCAG
1 GAATAAAGAAATCC--AATAAAGAGAAACCAG
*
29237663 G-ATAAAGAAACCCAA
1 GAATAAAGAAATCCAA
29237678 GATACGATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 2 0.05
30 25 0.62
31 5 0.12
32 8 0.20
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.13
Consensus pattern (30 bp):
GAATAAAGAAATCCAATAAAGAGAAACCAG
Found at i:29237681 original size:15 final size:15
Alignment explanation
Indices: 29237604--29237681 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
29237594 AGAAAACCGA
*
29237604 ATAAAGAAATCCAAT
1 ATAAAGAAATCCAAG
* **
29237619 ATAGAGAAA-CCTGG
1 ATAAAGAAATCCAAG
29237633 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
29237648 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
29237664 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
29237679 ATA
1 ATA
29237682 CGATACTATG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 2 0.04
15 44 0.90
16 3 0.06
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:29240713 original size:47 final size:47
Alignment explanation
Indices: 29240645--29241428 Score: 1568
Period size: 47 Copynumber: 16.7 Consensus size: 47
29240635 ATCCATAAAT
29240645 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29240692 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29240739 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29240786 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29240833 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29240880 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29240927 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29240974 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241021 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241068 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241115 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241162 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241209 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241256 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241303 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241350 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
29241397 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
29241429 TCAACCATCC
Statistics
Matches: 737, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 737 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:29254993 original size:42 final size:41
Alignment explanation
Indices: 29254830--29254994 Score: 123
Period size: 42 Copynumber: 3.9 Consensus size: 41
29254820 AATCATACCA
** * * *
29254830 ATGCCATATCCCAGATATGGTCTTTTATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAACTCATATCG
* * * * * **
29254872 ATGCCAATAGCCTAGCTATAGTCTTACAAGATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAACTCATATCG
* * * * * *
29254914 ACGCCATGTCCCAGACATGGTCCTACACAAAATCTCATAGCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAA-CTCATATCG
*
29254956 ATGCCATATCCCAGATATGGTCTTATACGTAAACTCATA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAACTCATA
29254995 ACCCTAATAT
Statistics
Matches: 92, Mismatches: 28, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
41 16 0.17
42 57 0.62
43 19 0.21
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAACTCATATCG
Found at i:29256865 original size:13 final size:13
Alignment explanation
Indices: 29256847--29256872 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29256837 TTAATACTTA
29256847 ACTGAAAATTGTT
1 ACTGAAAATTGTT
29256860 ACTGAAAATTGTT
1 ACTGAAAATTGTT
29256873 GTTATAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ACTGAAAATTGTT
Found at i:29270051 original size:42 final size:41
Alignment explanation
Indices: 29270005--29270157 Score: 141
Period size: 42 Copynumber: 3.7 Consensus size: 41
29269995 AATCATACCA
* **
29270005 ATGCCATATCCCAGATATGGTTTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-GAAATCTCATATCG
* *
29270047 ATGCCAATAGCGCA-ACTATGGTCTTACA-AAATTCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACAGAAA-TCTCATATCG
* * * * *
29270089 ATGCCATGTCCCAGACATGGTCCTACACGAAACCTCAT-TAGG
1 ATGCCATATCCCAGATATGGTCTTACA-GAAATCTCATAT-CG
29270131 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
29270158 CGTAAACTCA
Statistics
Matches: 89, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
41 17 0.19
42 52 0.58
43 20 0.22
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAGAAATCTCATATCG
Found at i:29270158 original size:42 final size:42
Alignment explanation
Indices: 29270088--29270168 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
29270078 TTCTCATATC
*
29270088 GATGCCATGTCCCAGACATGGTCCTACACG-AAACCTCATTAG
1 GATGCCATATCCCAGACATGGTCCTACACGTAAA-CTCATTAG
* *
29270130 GATGCCATATCCCAGATATGGTCTTACACGTAAACTCAT
1 GATGCCATATCCCAGACATGGTCCTACACGTAAACTCAT
29270169 AACCCTAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 32 0.91
43 3 0.09
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (42 bp):
GATGCCATATCCCAGACATGGTCCTACACGTAAACTCATTAG
Found at i:29270983 original size:46 final size:46
Alignment explanation
Indices: 29270932--29271028 Score: 194
Period size: 46 Copynumber: 2.1 Consensus size: 46
29270922 GCTATGGTGT
29270932 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
1 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
29270978 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
1 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
29271024 CTTGA
1 CTTGA
29271029 TTTTCCCTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (46 bp):
CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
Found at i:29273961 original size:44 final size:44
Alignment explanation
Indices: 29273880--29274015 Score: 123
Period size: 45 Copynumber: 3.0 Consensus size: 44
29273870 ACTAGCTCTC
29273880 ACATATCCGTACCGATGCCATGTCCCAGACATGGTCTTACATTG
1 ACATATCCGTACCGATGCCATGTCCCAGACATGGTCTTACATTG
* * *
29273924 ACATATCTCGTAGTCGATG-CATGTCCTAGACAT-GTCTTACACTG
1 ACATATC-CGTA-CCGATGCCATGTCCCAGACATGGTCTTACATTG
* * ** * *
29273968 GCTTACATTTGGAGGCCGATGCCTTGTCCCAGACATGGTCTTACATTG
1 AC--ATATCCGTA--CCGATGCCATGTCCCAGACATGGTCTTACATTG
29274016 GCTTTCATAA
Statistics
Matches: 73, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
44 18 0.25
45 19 0.26
46 14 0.19
47 12 0.16
48 10 0.14
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (44 bp):
ACATATCCGTACCGATGCCATGTCCCAGACATGGTCTTACATTG
Found at i:29274001 original size:92 final size:93
Alignment explanation
Indices: 29273891--29274060 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 93
29273881 CATATCCGTA
* *
29273891 CCGATGCCATGTCCCAGACATGGTCTTACATTGACATATC-T-CGTAGTCGATGCATGTCCTAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACATTGAC-TATCATACGTAGCCGATGCATGTCCCAGA
29273954 CATGTCTTACACTGGCTTACATTTGGAGG
65 CATGTCTTACACTGGCTTACATTTGGAGG
* * * * *
29273983 CCGATGCCTTGTCCCAGACATGGTCTTACATTGGCTTTCATAATGTGGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCAT-ACGTAGCCGATGCATGTCCCAGA
29274048 CATGTCTTACACT
65 CATGTCTTACACT
29274061 AGCACACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
91 3 0.04
92 34 0.50
94 31 0.46
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCATACGTAGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCTTACATTTGGAGG
Found at i:29274018 original size:48 final size:47
Alignment explanation
Indices: 29273891--29274058 Score: 161
Period size: 48 Copynumber: 3.6 Consensus size: 47
29273881 CATATCCGTA
*
29273891 CCGATGCCATGTCCCAGACATGGTCTTACATT-G---ACATATCTCGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATAT-T-GGAGG
* * *
29273937 TCGATGCATGTCCTAGACATGTCTTACACTGGCTTACAT-TTGGAGG
1 CCGATGCATGTCCCAGACATGTCTTACATTGGCTTACATATTGGAGG
* * * *
29273983 CCGATGCCTTGTCCCAGACATGGTCTTACATTGGCTTTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATATTGGAGG
29274031 CCGATGCATGTCCCAGACATGTCTTACA
1 CCGATGCATGTCCCAGACATGTCTTACA
29274059 CTAGCACACA
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
44 9 0.09
45 16 0.16
46 20 0.20
47 26 0.25
48 30 0.29
49 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGTCTTACATTGGCTTACATATTGGAGG
Found at i:29278314 original size:29 final size:29
Alignment explanation
Indices: 29278275--29278353 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
29278265 CTTAATAATC
*
29278275 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
29278305 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
29278334 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
29278354 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:29278400 original size:43 final size:43
Alignment explanation
Indices: 29278335--29278480 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
29278325 TGCATTTCAA
29278335 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
29278378 GCCCGCACACTTAGTGCAAATCTCACAACCGTGAACACATATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
29278421 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
29278464 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
29278481 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:29280384 original size:37 final size:37
Alignment explanation
Indices: 29280334--29280412 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
29280324 TTATTACGAA
* * *
29280334 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
29280371 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
29280408 GTCTT
1 GTCTT
29280413 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:29280634 original size:46 final size:47
Alignment explanation
Indices: 29280531--29280674 Score: 182
Period size: 47 Copynumber: 3.1 Consensus size: 47
29280521 CCCTTCGGGA
* * * * * * *
29280531 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
29280578 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
29280624 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29280671 CTTA
1 CTTA
29280675 CTATCATTTC
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 39 0.48
47 43 0.52
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:29283821 original size:38 final size:38
Alignment explanation
Indices: 29283767--29283843 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
29283757 CATCTGGTTA
29283767 GGGAAAGAAAAACATAATTGATTTTTCCTGACGTCCTC
1 GGGAAAGAAAAACATAATTGATTTTTCCTGACGTCCTC
*
29283805 GGGAAAGAAAACCATAATTGATTTTTCCTGACGTCCTC
1 GGGAAAGAAAAACATAATTGATTTTTCCTGACGTCCTC
29283843 G
1 G
29283844 TTTAACTTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (38 bp):
GGGAAAGAAAAACATAATTGATTTTTCCTGACGTCCTC
Found at i:29285949 original size:16 final size:16
Alignment explanation
Indices: 29285928--29285970 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
29285918 ATGTATCGGC
*
29285928 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
*
29285944 AAAAGCTAAAATGCCG
1 AAAAGCTGAAATGCCG
29285960 AAAAGCTGAAA
1 AAAAGCTGAAA
29285971 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:29286217 original size:28 final size:29
Alignment explanation
Indices: 29286181--29286295 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
29286171 GTGAGCATGA
* * **
29286181 ATATGAATGTGA-CTGGGCCTAATGATCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
29286209 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
29286238 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
29286267 ATATAAATATGA-TTGGGCTTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
29286295 A
1 A
29286296 AATATAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.35
29 49 0.65
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:29286256 original size:58 final size:57
Alignment explanation
Indices: 29286194--29286304 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
29286184 TGAATGTGAC
* * * *
29286194 TGGGCCTAATGATCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGAGCCATATAAATATGA-TTGGGCCTAAAGGGCCAAATACAGGTGATT
* * *
29286252 TGGGCCTAATGGGCCATATAAATATGATTGGGCTTAAAGGGCCAAATATAGGT
1 TGGGCCTAATGAGCCATATAAATATGATTGGGCCTAAAGGGCCAAATACAGGT
29286305 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (57 bp):
TGGGCCTAATGAGCCATATAAATATGATTGGGCCTAAAGGGCCAAATACAGGTGATT
Found at i:29286951 original size:17 final size:18
Alignment explanation
Indices: 29286929--29286962 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
29286919 TGCATGATTG
29286929 TTGAATG-ATGTTTTTTT
1 TTGAATGCATGTTTTTTT
*
29286946 TTGAATGCTTGTTTTTT
1 TTGAATGCATGTTTTTT
29286963 GTCGAGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.03, G:0.18, T:0.65
Consensus pattern (18 bp):
TTGAATGCATGTTTTTTT
Found at i:29290767 original size:6 final size:6
Alignment explanation
Indices: 29290748--29290835 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
29290738 AAGAAACATT
* *
29290748 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAGA ATCAG- GTGGCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
29290797 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
29290836 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:29290798 original size:31 final size:31
Alignment explanation
Indices: 29290757--29290835 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
29290747 TATCAGAACT
* **
29290757 AGAATTAGAATCAGAATCAGAATCAGGTGGC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
29290788 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
29290819 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
29290836 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:29290821 original size:25 final size:24
Alignment explanation
Indices: 29290763--29290832 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
29290753 AACTAGAATT
*
29290763 AGAATCAGAATCAGAATCAGGTGGC
1 AGAATCAGAATCAGAATCA-GTAGC
*
29290788 AGAATCAGAATCAGAATCAGTATC
1 AGAATCAGAATCAGAATCAGTAGC
*
29290812 AGGTAA-CAGAATCAAAATCAG
1 A-G-AATCAGAATCAGAATCAG
29290833 AATGTGAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 4 0.10
25 34 0.85
26 2 0.05
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGTAGC
Found at i:29291050 original size:27 final size:28
Alignment explanation
Indices: 29290958--29291060 Score: 97
Period size: 27 Copynumber: 3.8 Consensus size: 28
29290948 GGCTACCAGA
** * *
29290958 ACAGATATTGTGATAGAGTCACCAG-AT
1 ACAGATATTGTGGCAAAGCCACCAGAAT
* *
29290985 ACAGATATTTTGGCAGAGCCACCA-AA-
1 ACAGATATTGTGGCAAAGCCACCAGAAT
*
29291011 ACAGATATTTGTGGCATAGCCACCAGAAT
1 ACAGATA-TTGTGGCAAAGCCACCAGAAT
*
29291040 A-AGATAATGTGGCAAAGCCAC
1 ACAGATATTGTGGCAAAGCCAC
29291061 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.11
27 49 0.77
28 7 0.11
29 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAGATATTGTGGCAAAGCCACCAGAAT
Found at i:29291672 original size:27 final size:27
Alignment explanation
Indices: 29291624--29291846 Score: 270
Period size: 27 Copynumber: 8.3 Consensus size: 27
29291614 GGGGCAAAAT
* *
29291624 GGTAATTTTACCCCAC-GAGGGTATCTT-
1 GGTAATTCTACCCTACAG-GGGTAT-TTC
29291651 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
29291678 GATAATTCTACCTTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
29291705 AGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
29291732 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
29291759 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
29291786 GATAATTCTACCTTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
29291813 GGTAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
29291840 GGTAATT
1 GGTAATT
29291847 TCACAAACCA
Statistics
Matches: 165, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 162 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:29291863 original size:81 final size:81
Alignment explanation
Indices: 29291641--29291900 Score: 285
Period size: 81 Copynumber: 3.2 Consensus size: 81
29291631 TTACCCCACG
* * * *
29291641 AGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAGGGATATTTC-
1 AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCG
* *
29291705 AGTAATTCTACCCTAGA
66 A-TAATTCTACCATATA
* * * * * *
29291722 GGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCG
1 AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCG
*
29291787 ATAATTCTACCTTATA
66 ATAATTCTACCATATA
* *
29291803 AGGGTATTTTGGTAATTCTACCCTGCAGGGGTATTTCGGTAATT-T-CACAAACCAGGGGTATTT
1 AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC-CATA-CAGGGGTATTT
* * *
29291866 TGATAATTTTA-CAAACTA
64 CGATAATTCTACCATA-TA
*
29291884 GGGGTATTTTGGTAATT
1 AGGGTATTTTGGTAATT
29291901 TTATTGATCG
Statistics
Matches: 151, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 5 0.03
81 144 0.95
82 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCG
ATAATTCTACCATATA
Found at i:29291873 original size:54 final size:54
Alignment explanation
Indices: 29291642--29291846 Score: 311
Period size: 54 Copynumber: 3.8 Consensus size: 54
29291632 TACCCCACGA
*
29291642 GGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
* ** * *
29291696 GGATATTTCAGTAATTCTACCCTAGAGGGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
* * *
29291750 GGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCGATAATTCTACCTTATAA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
* *
29291804 GGGTATTTTGGTAATTCTACCCTGCAGGGGTATTTCGGTAATT
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATT
29291847 TCACAAACCA
Statistics
Matches: 134, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 134 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (54 bp):
GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
Found at i:29291902 original size:27 final size:27
Alignment explanation
Indices: 29291804--29291929 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
29291794 TACCTTATAA
* *
29291804 GGGTATTTTGGTAATTCTAC--CCTGCAG
1 GGGTATTTTGGTAATTTTACAAACT--AG
* * *
29291831 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
29291858 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*** *
29291885 GGGTATTTTGGTAATTTTATTGA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
29291911 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGGTAATTTT
29291930 GTAAACCAAG
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.02
27 79 0.96
29 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:29291941 original size:27 final size:27
Alignment explanation
Indices: 29291831--29291946 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
29291821 TACCCTGCAG
* * * *
29291831 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
29291858 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
** * *
29291885 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
29291912 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
29291939 GGGTATTT
1 GGGTATTT
29291947 CATTAATTTT
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:29291954 original size:54 final size:54
Alignment explanation
Indices: 29291831--29291988 Score: 129
Period size: 54 Copynumber: 2.9 Consensus size: 54
29291821 TACCCTGCAG
* * * * * ** * *
29291831 GGGTATTTCGGTAATTTCACAAA-CCAGGGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTGTAAACCAA
** **
29291885 GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAACCAA
* * *** *
29291939 GGGTATTTCATTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAA
29291989 TAGAGGGTAA
Statistics
Matches: 82, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
54 80 0.98
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAACCAA
Found at i:29291980 original size:27 final size:27
Alignment explanation
Indices: 29291950--29292037 Score: 131
Period size: 27 Copynumber: 3.3 Consensus size: 27
29291940 GGTATTTCAT
* *
29291950 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATAGAGGGTAAAATGG
*
29291977 TAATTCTGTAAATAGAGGGTAAAACGG
1 TAATTCTGTAAATAGAGGGTAAAATGG
* *
29292004 TAATTCTGTAAATTGAGAGTAAAATGG
1 TAATTCTGTAAATAGAGGGTAAAATGG
29292031 TAATTCT
1 TAATTCT
29292038 ATCTTATTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.33
Consensus pattern (27 bp):
TAATTCTGTAAATAGAGGGTAAAATGG
Found at i:29291996 original size:54 final size:54
Alignment explanation
Indices: 29291920--29292037 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 54
29291910 GAGGGTATTT
* *** * * *
29291920 TGGTAATTTTGTAAACCAAGGGTATTTCATTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAA
* * *
29291974 TGGTAATTCTGTAAA-TAGAGGGTAAAACGGTAATTCTGTAAATTGAGAGTAAAA
1 TGGTAATTCTGTAAACCA-AGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAA
29292028 TGGTAATTCT
1 TGGTAATTCT
29292038 ATCTTATTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (54 bp):
TGGTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAA
Found at i:29292072 original size:27 final size:27
Alignment explanation
Indices: 29292042--29292127 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
29292032 AATTCTATCT
*
29292042 TATTTTGGTAATTTTACAAATCGAGGA
1 TATTTTGGTAATTTTACAAATCGAGGG
* * *
29292069 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
* *
29292096 TACTTTGGTAATTTTACAAGTCGAGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
29292123 TATTT
1 TATTT
29292128 CAATAATTTG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAATCGAGGG
Found at i:29293346 original size:42 final size:42
Alignment explanation
Indices: 29293268--29293347 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
29293258 AGAATTGGGC
** * * *
29293268 ACACGGCCTTGGGCACAGGTGTGTGGCTCAGTTGTGTGGTTG
1 ACACGGCCTTGGGCACAGGCATGTGACACAGCTGTGTGGTTG
* *
29293310 ACACGGCCTTGGGCACGGGCATGTTACACAGCTGTGTG
1 ACACGGCCTTGGGCACAGGCATGTGACACAGCTGTGTG
29293348 AAAACTACAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.25
Consensus pattern (42 bp):
ACACGGCCTTGGGCACAGGCATGTGACACAGCTGTGTGGTTG
Found at i:29299891 original size:45 final size:45
Alignment explanation
Indices: 29299761--29300023 Score: 358
Period size: 45 Copynumber: 6.0 Consensus size: 45
29299751 TTTTATCAAA
* * * **
29299761 TCACCGGCATT-CAGCCTGCTAGGTTTAAAAACCCGAAT--TCAT-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
*
29299803 TCACCGGCATT-TCGCCTGCTAGGCTC-AAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
29299846 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
29299891 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCTAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
29299936 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
29299981 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATA
29300024 CTGTACAATA
Statistics
Matches: 197, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
41 9 0.05
42 24 0.12
43 11 0.06
44 14 0.07
45 139 0.71
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:29304327 original size:53 final size:53
Alignment explanation
Indices: 29304247--29304352 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
29304237 CAACACATGC
29304247 AGGATCTCATGTCATGTAAACAATGATTTATCCATCGGATATCCCTTTTTATT
1 AGGATCTCATGTCATGTAAACAATGATTTATCCATCGGATATCCCTTTTTATT
29304300 AGGATCTCATGTCATGTAAACAATGATTTATCCATCGGATATCCCTTTTTATT
1 AGGATCTCATGTCATGTAAACAATGATTTATCCATCGGATATCCCTTTTTATT
29304353 CAACCAGGAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (53 bp):
AGGATCTCATGTCATGTAAACAATGATTTATCCATCGGATATCCCTTTTTATT
Found at i:29307938 original size:25 final size:25
Alignment explanation
Indices: 29307886--29307977 Score: 94
Period size: 25 Copynumber: 3.7 Consensus size: 25
29307876 TCCTATACAT
* * * * *
29307886 GTATGCTCACACGAACTGTGAATCG
1 GTATGCTCTCACGAGCTATAAATTG
* * * *
29307911 GTATGCTTTCACGGGTTGTAAATTG
1 GTATGCTCTCACGAGCTATAAATTG
29307936 GTATGCTCTCACGAGCTATAAATTG
1 GTATGCTCTCACGAGCTATAAATTG
*
29307961 GTATGCTCTCACAAGCT
1 GTATGCTCTCACGAGCT
29307978 GTGGAGTATC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATAAATTG
Found at i:29327029 original size:25 final size:25
Alignment explanation
Indices: 29326977--29327068 Score: 94
Period size: 25 Copynumber: 3.7 Consensus size: 25
29326967 TCCTATACAT
* * * * *
29326977 GTATGCTCACACGAACTGTGAATCG
1 GTATGCTCTCACGAGCTATAAATTG
* * * *
29327002 GTATGCTTTCACGGGTTGTAAATTG
1 GTATGCTCTCACGAGCTATAAATTG
29327027 GTATGCTCTCACGAGCTATAAATTG
1 GTATGCTCTCACGAGCTATAAATTG
*
29327052 GTATGCTCTCACAAGCT
1 GTATGCTCTCACGAGCT
29327069 GTGGAGTATC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATAAATTG
Found at i:29338612 original size:58 final size:59
Alignment explanation
Indices: 29338438--29338681 Score: 337
Period size: 59 Copynumber: 4.2 Consensus size: 59
29338428 AGTGCCATAG
* * * * * *
29338438 ATCACAGAATCACATGCCTTTCAACGAGGCTACTCAAAAGCACCTGGGCCCTAGGATGT
1 ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGT
* *
29338497 ATCACATATTCACATGCCTCTCAACGGGGCTACTCAAAAGCACTCGGACCCTAGCATGT
1 ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGT
*
29338556 ATCACATATTCACATGCCTCTCAAC-AGGCTACTCAAAAGCACCCGGACTCTAGCATGT
1 ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGT
* * * * * *
29338614 ATGACATAATCACATGCCTCTCAATGGGGCTACTCAAAGGCATCCGGACCCTAGCATGT
1 ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGT
*
29338673 ATTACATAT
1 ATCACATAT
29338682 CAATTTAGCT
Statistics
Matches: 164, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
58 52 0.32
59 112 0.68
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (59 bp):
ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGT
Found at i:29338645 original size:117 final size:118
Alignment explanation
Indices: 29338438--29338681 Score: 357
Period size: 117 Copynumber: 2.1 Consensus size: 118
29338428 AGTGCCATAG
* * * * * *
29338438 ATCACAGAATCACATGCCTTTCAACGAGGCTACTCAAAAGCACCTGGGCCCTAGGATGTATCACA
1 ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGTATCACA
*
29338503 TATTCACATGCCTCTCAACGGGGCTACTCAAAAGCA-CTCGGACCCTAGCATGT
66 TAATCACATGCCTCTCAACGGGGCTACTCAAAAGCATC-CGGACCCTAGCATGT
* *
29338556 ATCACATATTCACATGCCTCTCAAC-AGGCTACTCAAAAGCACCCGGACTCTAGCATGTATGACA
1 ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGTATCACA
* *
29338620 TAATCACATGCCTCTCAATGGGGCTACTCAAAGGCATCCGGACCCTAGCATGT
66 TAATCACATGCCTCTCAACGGGGCTACTCAAAAGCATCCGGACCCTAGCATGT
*
29338673 ATTACATAT
1 ATCACATAT
29338682 CAATTTAGCT
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
117 90 0.80
118 23 0.20
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (118 bp):
ATCACATATTCACATGCCTCTCAACGAGGCTACTCAAAAGCACCCGGACCCTAGCATGTATCACA
TAATCACATGCCTCTCAACGGGGCTACTCAAAAGCATCCGGACCCTAGCATGT
Found at i:29342579 original size:12 final size:12
Alignment explanation
Indices: 29342562--29342587 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
29342552 ATGACATCAC
29342562 ATTTTCAGAAAA
1 ATTTTCAGAAAA
29342574 ATTTTCAGAAAA
1 ATTTTCAGAAAA
29342586 AT
1 AT
29342588 CTGATATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.35
Consensus pattern (12 bp):
ATTTTCAGAAAA
Found at i:29348215 original size:14 final size:13
Alignment explanation
Indices: 29348198--29348236 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
29348188 AGTAGTTTAA
29348198 AAAAAGATAAAAAT
1 AAAAA-ATAAAAAT
29348212 AAAAACATAAAAAT
1 AAAAA-ATAAAAAT
*
29348226 AATAAATAAAA
1 AAAAAATAAAA
29348237 GTCTTTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:29358538 original size:7 final size:7
Alignment explanation
Indices: 29358526--29358565 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
29358516 GAATGAATGA
29358526 ATGAGGG
1 ATGAGGG
29358533 ATGAGGG
1 ATGAGGG
29358540 ATGAGGG
1 ATGAGGG
29358547 ATGAGGG
1 ATGAGGG
*
29358554 ATGAGGA
1 ATGAGGG
29358561 ATGAG
1 ATGAG
29358566 TAGGGGTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.33, C:0.00, G:0.53, T:0.15
Consensus pattern (7 bp):
ATGAGGG
Found at i:29367703 original size:33 final size:34
Alignment explanation
Indices: 29367666--29367730 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
29367656 ATCTCAGTTA
*
29367666 GGGCCTTCGCCC-ATTTAGTAACAGTATCAGTGC
1 GGGCCTTAGCCCAATTTAGTAACAGTATCAGTGC
29367699 GGGCCTTAGCCCAATTTAGTAACAGTATCAGT
1 GGGCCTTAGCCCAATTTAGTAACAGTATCAGT
29367731 ACAAAATGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 11 0.37
34 19 0.63
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (34 bp):
GGGCCTTAGCCCAATTTAGTAACAGTATCAGTGC
Found at i:29372700 original size:21 final size:22
Alignment explanation
Indices: 29372674--29372714 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
29372664 CACTAGACAC
*
29372674 AGGGGC-ACACGCCTGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
29372695 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
29372715 ACCAATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:29389236 original size:17 final size:18
Alignment explanation
Indices: 29389214--29389247 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
29389204 GTTTTGTTTA
29389214 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
29389231 AATAAATTAATATGCAT
1 AATAAATTAATATGCAT
29389248 ATATTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:29396470 original size:21 final size:22
Alignment explanation
Indices: 29396444--29396484 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
29396434 CACTAGACAT
29396444 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
29396465 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
29396485 ACCAATTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.29, G:0.44, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:29396663 original size:41 final size:41
Alignment explanation
Indices: 29396618--29396712 Score: 154
Period size: 41 Copynumber: 2.3 Consensus size: 41
29396608 ATGTCCTGGC
*
29396618 ACACGCCCGTGTCCATGGCCCGTGTCCCTCACACGGCCATG
1 ACACGCCCGTGTCCATGGCCAGTGTCCCTCACACGGCCATG
*
29396659 ACACGCCCGTGACCATGGCCAGTGTCCCTCACACGGCCATG
1 ACACGCCCGTGTCCATGGCCAGTGTCCCTCACACGGCCATG
* *
29396700 ACATGCCCATGTC
1 ACACGCCCGTGTC
29396713 TTAGCCCATG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.18, C:0.42, G:0.23, T:0.17
Consensus pattern (41 bp):
ACACGCCCGTGTCCATGGCCAGTGTCCCTCACACGGCCATG
Found at i:29397760 original size:46 final size:44
Alignment explanation
Indices: 29397674--29397796 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 44
29397664 GGGTATAATA
* *
29397674 CCGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTTGTA-G
1 CCGATG-CATGTCCTAGACAT-GTCTTACACTAACACATCTCG-AGG
* **
29397720 CCGATGCATGTCCTAGACATGTCTTATACTGGCTTACATCTCGAGG
1 CCGATGCATGTCCTAGACATGTCTTACACTAAC--ACATCTCGAGG
* *
29397766 CCGATACATGTCTTAGACATGTCTTACACTA
1 CCGATGCATGTCCTAGACATGTCTTACACTA
29397797 GCTCTAGTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.15
45 14 0.22
46 41 0.63
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (44 bp):
CCGATGCATGTCCTAGACATGTCTTACACTAACACATCTCGAGG
Found at i:29397815 original size:46 final size:47
Alignment explanation
Indices: 29397719--29397849 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 47
29397709 ACATCTTGTA
* * *
29397719 GCCGATGCATGTCCTAGACATGTCTTATACTGGCT-TACATCTCGAG
1 GCCGATACATGTCCTAGACATGTCTTACACTGGCTCTACATCTCAAG
* * * * *
29397765 GCCGATACATGTCTTAGACATGTCTTACACTAGCTCTA-GTTTCAAT
1 GCCGATACATGTCCTAGACATGTCTTACACTGGCTCTACATCTCAAG
** *
29397811 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTCT
1 GCCGA-TACATGTCCTAGACAT-GTCTTACACTGGCTCT
29397850 CGTAATGTGG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 40 0.58
47 14 0.20
48 15 0.22
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (47 bp):
GCCGATACATGTCCTAGACATGTCTTACACTGGCTCTACATCTCAAG
Found at i:29403663 original size:20 final size:19
Alignment explanation
Indices: 29403638--29403688 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
29403628 CTTTATTCTA
29403638 TTAATTTATTCATTTTTATT
1 TTAATTTATT-ATTTTTATT
* *
29403658 TTAATTTTAATATTTTTGTT
1 TTAA-TTTATTATTTTTATT
29403678 TTAAATTTATT
1 TT-AATTTATT
29403689 TTTACATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (19 bp):
TTAATTTATTATTTTTATT
Found at i:29406342 original size:93 final size:93
Alignment explanation
Indices: 29406183--29406370 Score: 358
Period size: 93 Copynumber: 2.0 Consensus size: 93
29406173 AATGTAGCTT
29406183 TAGTACTTAATAACTTCGTATAAAAGAAAGTAAACTTACTGGTCTTATTTATTAACACAAGCACA
1 TAGTACTTAATAACTTCGTATAAAAGAAAGTAAACTTACTGGTCTTATTTATTAACACAAGCACA
29406248 CATAAATATATATTCCATCAATTTTGGG
66 CATAAATATATATTCCATCAATTTTGGG
* *
29406276 TAGTACTTAGTAACTTCGTATAATAGAAAGTAAACTTACTGGTCTTATTTATTAACACAAGCACA
1 TAGTACTTAATAACTTCGTATAAAAGAAAGTAAACTTACTGGTCTTATTTATTAACACAAGCACA
29406341 CATAAATATATATTCCATCAATTTTGGG
66 CATAAATATATATTCCATCAATTTTGGG
29406369 TA
1 TA
29406371 AGTTACCTAA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (93 bp):
TAGTACTTAATAACTTCGTATAAAAGAAAGTAAACTTACTGGTCTTATTTATTAACACAAGCACA
CATAAATATATATTCCATCAATTTTGGG
Found at i:29406686 original size:17 final size:18
Alignment explanation
Indices: 29406647--29406685 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
29406637 TTAATAATTA
*
29406647 AAAACTCATACCCTTTTT
1 AAAACTCATACCATTTTT
*
29406665 AAAACTTATACCATTTTT
1 AAAACTCATACCATTTTT
29406683 AAA
1 AAA
29406686 CCTTGATAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAACTCATACCATTTTT
Found at i:29407498 original size:26 final size:26
Alignment explanation
Indices: 29407430--29407506 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 26
29407420 ATGGCTGCCG
* *
29407430 GAACAGATATTGTGACAGAGTCACCA
1 GAACAGATATTGTGGCAGAGCCACCA
29407456 GATACAGATATTGTGGCAGAGCCACCA
1 GA-ACAGATATTGTGGCAGAGCCACCA
* * *
29407483 GAACAGATAATATGGCAAAGCCAC
1 GAACAGATATTGTGGCAGAGCCAC
29407507 TTAACAGAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 21 0.47
27 24 0.53
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
GAACAGATATTGTGGCAGAGCCACCA
Found at i:29407699 original size:22 final size:22
Alignment explanation
Indices: 29407665--29407728 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
29407655 GCAAATACGT
*
29407665 TTGGTACACAGCCATAATCAGG
1 TTGGTACAAAGCCATAATCAGG
* * *
29407687 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGTACAAAGCCATAAT-CAGG
*
29407709 TTGGTGCAAAGCCATAATCA
1 TTGGTACAAAGCCATAATCA
29407729 AAAGGCTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (22 bp):
TTGGTACAAAGCCATAATCAGG
Found at i:29408190 original size:27 final size:27
Alignment explanation
Indices: 29408145--29408442 Score: 375
Period size: 27 Copynumber: 11.1 Consensus size: 27
29408135 TTTAACACCC
29408145 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
29408172 TCGATATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
29408199 TCGGTAATTCTATCCTACAGGGTTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
29408226 TCAGTAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
29408253 TCGGCATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
29408280 TCGGTATTTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
**
29408307 TTAGTAATTCTACCCTACAGGGGT-TT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
29408333 TCGGTATTTCTACCCTACTA-GGGTATT
1 TCGGTAATTCTACCCTAC-AGGGGTATT
* * *
29408360 TTGGTATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
29408387 TCGGTAATTCTACCTTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
** *
29408414 TCATTAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
29408441 TC
1 TC
29408443 AATAATTTAG
Statistics
Matches: 232, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 22 0.09
27 210 0.91
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:29408283 original size:81 final size:80
Alignment explanation
Indices: 29408148--29408442 Score: 430
Period size: 81 Copynumber: 3.7 Consensus size: 80
29408138 AACACCCTCG
* * *
29408148 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCGGTAATTCTATC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACC
29408213 CTACAGGGTTATTTCA
66 CTACAGGG-TATTTCA
* *
29408229 GTAATTCTACCCTATAGGGGTATTTCGGCATTTCTACCCTACAAGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACC
*
29408294 CTACAGGGGTATTTTA
66 CTACA-GGGTATTTCA
* *
29408310 GTAATTCTACCCTACAGGGGT-TTTCGGTATTTCTACCCTACTAGGGTATTTTGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACC
*
29408374 CTACAAGGGTATTTCG
66 CTAC-AGGGTATTTCA
* * ** *
29408390 GTAATTCTACCTTATAGGGGTATTTCATTAATTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
29408443 AATAATTTAG
Statistics
Matches: 192, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
80 71 0.37
81 118 0.61
82 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACC
CTACAGGGTATTTCA
Found at i:29421668 original size:22 final size:22
Alignment explanation
Indices: 29421636--29421686 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
29421626 CCCTACAAGT
*
29421636 TTGGCATGGCCTAGCACACGGC
1 TTGGCACGGCCTAGCACACGGC
*
29421658 TTGGCACGGCCTAGCACATGGC
1 TTGGCACGGCCTAGCACACGGC
29421680 TTGGCAC
1 TTGGCAC
29421687 ATGGGCATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (22 bp):
TTGGCACGGCCTAGCACACGGC
Found at i:29424925 original size:20 final size:20
Alignment explanation
Indices: 29424900--29424941 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
29424890 AAACAAAAAT
* * *
29424900 ATTAAACATTAAATCTAAAC
1 ATTAAAAATAAAATATAAAC
29424920 ATTAAAAATAAAATATAAAC
1 ATTAAAAATAAAATATAAAC
29424940 AT
1 AT
29424942 ATAATATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.29
Consensus pattern (20 bp):
ATTAAAAATAAAATATAAAC
Found at i:29425451 original size:6 final size:7
Alignment explanation
Indices: 29425435--29425460 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
29425425 CCGATGTGGC
29425435 TTTTTAT
1 TTTTTAT
29425442 TTTTTAT
1 TTTTTAT
29425449 TTTTTAT
1 TTTTTAT
29425456 TTTTT
1 TTTTT
29425461 GCCAGCATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:29426280 original size:15 final size:15
Alignment explanation
Indices: 29426260--29426289 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
29426250 TTAAAATTTT
29426260 ATTTTTTTTAATATC
1 ATTTTTTTTAATATC
29426275 ATTTTTTTTAATATC
1 ATTTTTTTTAATATC
29426290 GAAATACTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTTTTTAATATC
Found at i:29427622 original size:20 final size:21
Alignment explanation
Indices: 29427573--29427616 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
29427563 AGCGAAACGA
29427573 CAGCAAAACAATGACAAAATAG
1 CAGCAAAACAATGA-AAAATAG
29427595 CAGCAAAACAATG-AAAATAG
1 CAGCAAAACAATGAAAAATAG
29427615 CA
1 CA
29427617 TGAAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 9 0.41
22 13 0.59
ACGTcount: A:0.59, C:0.18, G:0.14, T:0.09
Consensus pattern (21 bp):
CAGCAAAACAATGAAAAATAG
Found at i:29427624 original size:22 final size:21
Alignment explanation
Indices: 29427577--29427623 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
29427567 AAACGACAGC
*
29427577 AAAACAATGACAAAATAGCAGC
1 AAAACAATGA-AAAATAGCAGA
29427599 AAAACAATG-AAAATAGCATGA
1 AAAACAATGAAAAATAGCA-GA
29427620 AAAA
1 AAAA
29427624 ATAAGTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 9 0.39
21 5 0.22
22 9 0.39
ACGTcount: A:0.64, C:0.13, G:0.13, T:0.11
Consensus pattern (21 bp):
AAAACAATGAAAAATAGCAGA
Found at i:29429737 original size:46 final size:46
Alignment explanation
Indices: 29429562--29429773 Score: 168
Period size: 46 Copynumber: 4.6 Consensus size: 46
29429552 TGTTAGCTAA
* * ***
29429562 TGTAAGACATGTCTGGGACATGCATTGACCACCTTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATTGGCTACGAGATGAGAGCCAG
* * * * * * *
29429608 TATAAGACTATGTCTGGGATATGGCATCGGC-ATTGAGACGAGTGCTAG
1 TGTAAGAC-ATGTCTGGGACAT-GCATTGGCTA-CGAGATGAGAGCCAG
29429656 TGTAAGACATGGT-TGGGACATGC-TTCGGCCT-CGAGATGTA-AGCCAG
1 TGTAAGACAT-GTCTGGGACATGCATT-GG-CTACGAGATG-AGAGCCAG
* *
29429702 TGTAAGACATGTCTGGGACATGCATTGGCTACGAGA-G-GTGTCAG
1 TGTAAGACATGTCTGGGACATGCATTGGCTACGAGATGAGAGCCAG
29429746 TGTAAGACCATGTCTGGGACATGGCATT
1 TGTAAGA-CATGTCTGGGACAT-GCATT
29429774 AACACAGATA
Statistics
Matches: 132, Mismatches: 20, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
44 11 0.08
45 20 0.15
46 52 0.39
47 26 0.20
48 23 0.17
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATTGGCTACGAGATGAGAGCCAG
Found at i:29439910 original size:13 final size:13
Alignment explanation
Indices: 29439892--29439916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29439882 CATTTTGGTA
29439892 TTTAATTATTATT
1 TTTAATTATTATT
29439905 TTTAATTATTAT
1 TTTAATTATTAT
29439917 GGTAAAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTAATTATTATT
Found at i:29446831 original size:16 final size:17
Alignment explanation
Indices: 29446802--29446834 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
29446792 TTTTTAATAA
*
29446802 TTTTTATTTGTTTTTAT
1 TTTTTAATTGTTTTTAT
29446819 TTTTTAATT-TTTTTAT
1 TTTTTAATTGTTTTTAT
29446835 AAAGCACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTAATTGTTTTTAT
Found at i:29446834 original size:26 final size:25
Alignment explanation
Indices: 29446782--29446830 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
29446772 CTTTTTATAA
29446782 ATTTGTTTTATTTTTAATAATTTTT
1 ATTTGTTTTATTTTTAATAATTTTT
29446807 ATTTGTTTTTATTTTT--TAATTTTT
1 ATTTG-TTTTATTTTTAATAATTTTT
29446831 TTATAAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.35
25 5 0.22
26 10 0.43
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (25 bp):
ATTTGTTTTATTTTTAATAATTTTT
Found at i:29449010 original size:45 final size:45
Alignment explanation
Indices: 29448934--29449032 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
29448924 GATTTATGGC
* *
29448934 AGAGACAAACTCTCATTCGAAGATGTAAAGGGTCATTTGTTGAGT
1 AGAGACAAACTCTCATTCGAAGATATAAAGGGTCATTTATTGAGT
* * *
29448979 AGAGGCAAACTCTCATTTGAAGATATGAAGGGTCATTTATTGAGT
1 AGAGACAAACTCTCATTCGAAGATATAAAGGGTCATTTATTGAGT
29449024 AGAGACAAA
1 AGAGACAAA
29449033 TTCAAAAATG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.27
Consensus pattern (45 bp):
AGAGACAAACTCTCATTCGAAGATATAAAGGGTCATTTATTGAGT
Found at i:29459700 original size:28 final size:28
Alignment explanation
Indices: 29459660--29459953 Score: 545
Period size: 28 Copynumber: 10.5 Consensus size: 28
29459650 TAAATTGTAC
29459660 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
29459688 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
29459716 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
29459744 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
29459772 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
29459800 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
29459828 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
29459856 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
29459884 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
29459912 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
29459939 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
29459954 GACTTAATAT
Statistics
Matches: 263, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
27 23 0.09
28 240 0.91
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.35
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:29462663 original size:46 final size:46
Alignment explanation
Indices: 29462559--29462826 Score: 358
Period size: 46 Copynumber: 5.8 Consensus size: 46
29462549 TTTGACATGA
* * * * *
29462559 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
*
29462604 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* * *
29462650 TTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCAAGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* *
29462696 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* ** * * *
29462742 TGCCATGATATCTTTCAACCATGGTCTTACACATTACATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
**
29462788 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
29462827 TTCAGAGAGC
Statistics
Matches: 201, Mismatches: 21, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
45 32 0.16
46 169 0.84
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
Found at i:29465946 original size:17 final size:15
Alignment explanation
Indices: 29465924--29465965 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 15
29465914 ACTATTTCTA
29465924 AAAAATTCAAAAAAATT
1 AAAAATT-AAAAAAA-T
29465941 AAAAATATAAAAAAAT
1 AAAAAT-TAAAAAAAT
29465957 AAAAATTAA
1 AAAAATTAA
29465966 CAGTGGGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.12
16 7 0.29
17 13 0.54
18 1 0.04
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAATTAAAAAAAT
Found at i:29466050 original size:20 final size:20
Alignment explanation
Indices: 29466012--29466052 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
29466002 AAACTTCATT
* *
29466012 TCCCTACGAACCCATATTTG
1 TCCCTACAAACCCAAATTTG
*
29466032 TCCCTACAAACCTAAATTTG
1 TCCCTACAAACCCAAATTTG
29466052 T
1 T
29466053 ACAAACTCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (20 bp):
TCCCTACAAACCCAAATTTG
Found at i:29467841 original size:51 final size:52
Alignment explanation
Indices: 29467765--29467944 Score: 258
Period size: 51 Copynumber: 3.5 Consensus size: 52
29467755 ACTAGTGACT
*
29467765 CAAGTGTGGCACTATGTGAAGGCCACTTTGTAAAGAAAGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
*
29467816 CAAGTGTGGTACTATGCGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
* * *
29467868 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAATG-TAGCATT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTC-A
* * *
29467919 CAAGGGTGGTACTATATGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
29467945 CGTGTATCCG
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
50 2 0.02
51 72 0.61
52 44 0.37
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
Found at i:29470471 original size:17 final size:18
Alignment explanation
Indices: 29470435--29470470 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
29470425 TTGTCACTAT
29470435 ATATTTTAGAATTAAAAA
1 ATATTTTAGAATTAAAAA
29470453 ATATTTTA-AATGTAAAAA
1 ATATTTTAGAAT-TAAAAA
29470471 TGTGATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (18 bp):
ATATTTTAGAATTAAAAA
Found at i:29474467 original size:52 final size:51
Alignment explanation
Indices: 29474389--29474487 Score: 162
Period size: 52 Copynumber: 1.9 Consensus size: 51
29474379 ACTAGTGACT
*
29474389 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAAGCCACTTTGTAAAG-AAGATAGCTTTGGTCA
* *
29474441 CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAGGTAGCTTTG
1 CAAGTGTGGTACTATGTGAAAGCCACTTTGTAAAGAAGATAGCTTTG
29474488 ACTATAAGGG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 11 0.25
52 33 0.75
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.29
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAAGCCACTTTGTAAAGAAGATAGCTTTGGTCA
Found at i:29474517 original size:51 final size:52
Alignment explanation
Indices: 29474389--29474517 Score: 156
Period size: 52 Copynumber: 2.5 Consensus size: 52
29474379 ACTAGTGACT
* *
29474389 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
1 CAAGGGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGCTCA
* * * *
29474441 CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAG-AAGGTAGCTTTGACT-A
1 CAAGGGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTG-CTCA
*
29474492 TAAGGGTGGTACTATGT-ACAGGCCAC
1 CAAGGGTGGTACTATGTGA-AGGCCAC
29474518 CGAGTATCTG
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
50 1 0.01
51 33 0.49
52 34 0.50
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (52 bp):
CAAGGGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGCTCA
Found at i:29478273 original size:34 final size:34
Alignment explanation
Indices: 29478235--29478307 Score: 78
Period size: 34 Copynumber: 2.1 Consensus size: 34
29478225 TTGATTTACG
29478235 TATTTGACAACTTAAATATAAAT-TAT-TCTATTTA
1 TATTTGAC-A-TTAAATATAAATATATGTCTATTTA
* * * *
29478269 TATTTTACATTATATATAAATATGTGTTTATTTA
1 TATTTGACATTAAATATAAATATATGTCTATTTA
29478303 TATTT
1 TATTT
29478308 AAATATTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
32 11 0.33
33 3 0.09
34 19 0.58
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.53
Consensus pattern (34 bp):
TATTTGACATTAAATATAAATATATGTCTATTTA
Found at i:29478488 original size:4 final size:4
Alignment explanation
Indices: 29478479--29478503 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
29478469 TATATCATGC
29478479 AAGA AAGA AAGA AAGA AAGA AAGA A
1 AAGA AAGA AAGA AAGA AAGA AAGA A
29478504 GATGGAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:29489001 original size:16 final size:19
Alignment explanation
Indices: 29488963--29489003 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 19
29488953 TTGGAGCAAC
29488963 TACAATCAATTATACATCA
1 TACAATCAATTATACATCA
29488982 TACAATC-ATT-TACA-CA
1 TACAATCAATTATACATCA
29488998 TACAAT
1 TACAAT
29489004 TAAGTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.36
17 4 0.18
18 3 0.14
19 7 0.32
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (19 bp):
TACAATCAATTATACATCA
Found at i:29490850 original size:45 final size:45
Alignment explanation
Indices: 29490786--29490879 Score: 179
Period size: 45 Copynumber: 2.1 Consensus size: 45
29490776 TTTCCAATCC
*
29490786 TGATTGACCAAGCGTCTCGTTACAAGAATTGCATTGCCACCCAAG
1 TGATTAACCAAGCGTCTCGTTACAAGAATTGCATTGCCACCCAAG
29490831 TGATTAACCAAGCGTCTCGTTACAAGAATTGCATTGCCACCCAAG
1 TGATTAACCAAGCGTCTCGTTACAAGAATTGCATTGCCACCCAAG
29490876 TGAT
1 TGAT
29490880 CTTAATCATC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (45 bp):
TGATTAACCAAGCGTCTCGTTACAAGAATTGCATTGCCACCCAAG
Found at i:29494174 original size:42 final size:42
Alignment explanation
Indices: 29494113--29494263 Score: 142
Period size: 42 Copynumber: 3.6 Consensus size: 42
29494103 CTGAGGCTAT
* *
29494113 GTGTAAGACCATATCTGGGATATGGCATCAATTTGAGACTTC
1 GTGTAAGACCATATCTGGGATATGACATCAATGTGAGACTTC
* * * *
29494155 GTGTAAGACCATGTTTGGGATATGACATCGATGTGAGATTTC
1 GTGTAAGACCATATCTGGGATATGACATCAATGTGAGACTTC
* * * * * ** *
29494197 GTGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGA-TCCC
1 GTGTAAGACCATATCTGGGATA-TGACATCAATGTGAGACT-TC
*
29494240 ATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATATCTGGGATATG
29494264 GCATTGGTAT
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
42 56 0.64
43 32 0.36
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGACATCAATGTGAGACTTC
Found at i:29497126 original size:33 final size:34
Alignment explanation
Indices: 29497062--29497146 Score: 120
Period size: 33 Copynumber: 2.5 Consensus size: 34
29497052 CCATCTCAGT
29497062 ACAGTATCAAATATGCAGTACGACCTTAGCCCATC
1 ACAGTATC-AATATGCAGTACGACCTTAGCCCATC
* * *
29497097 ACAGTATCAGTATGCATTA-GGCCTTAGCCCATC
1 ACAGTATCAATATGCAGTACGACCTTAGCCCATC
29497130 ACAGTATCAATA-GCAGT
1 ACAGTATCAATATGCAGT
29497147 CACGCAGATC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
32 4 0.09
33 24 0.53
34 9 0.20
35 8 0.18
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (34 bp):
ACAGTATCAATATGCAGTACGACCTTAGCCCATC
Found at i:29505609 original size:29 final size:29
Alignment explanation
Indices: 29505546--29505613 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
29505536 TAATCAACCG
*
29505546 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
29505575 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
29505604 CGCACACTTA
1 CGCACACTTA
29505614 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:29505726 original size:174 final size:174
Alignment explanation
Indices: 29505435--29505762 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
29505425 AACTCAAGGT
* * *
29505435 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
29505500 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
29505565 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
29505609 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
29505674 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
29505739 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
29505763 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:29505754 original size:29 final size:30
Alignment explanation
Indices: 29505715--29505793 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
29505705 CTTAATAATC
29505715 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
29505745 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
29505774 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
29505794 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:29507593 original size:34 final size:34
Alignment explanation
Indices: 29507542--29507606 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
29507532 ATTGGTATGA
* *
29507542 ATTAGGGCCTTATCCCATCACAATATCAATATAC
1 ATTAAGGCCTTAGCCCATCACAATATCAATATAC
*
29507576 ATTAAGGCCTTAGCCCATCACAGTATCAATA
1 ATTAAGGCCTTAGCCCATCACAATATCAATA
29507607 GCATTCATGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (34 bp):
ATTAAGGCCTTAGCCCATCACAATATCAATATAC
Found at i:29508195 original size:20 final size:20
Alignment explanation
Indices: 29508167--29508220 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
29508157 CTGTGTGTCA
* *
29508167 CACATGGCCTGTCTGGCCAT
1 CACACGGCCTGTCTAGCCAT
*
29508187 CACACGGCCTGTCTAGTCAT
1 CACACGGCCTGTCTAGCCAT
*
29508207 CTCACGGCCGTGTC
1 CACACGGCC-TGTC
29508221 ATGCACGCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 25 0.86
21 4 0.14
ACGTcount: A:0.15, C:0.37, G:0.24, T:0.24
Consensus pattern (20 bp):
CACACGGCCTGTCTAGCCAT
Found at i:29514338 original size:42 final size:42
Alignment explanation
Indices: 29514265--29514345 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 42
29514255 TTAGGGTTAC
29514265 TGAGACTATGTGTAAGACCATATCTGAGATATGGCATCACTT
1 TGAGACTATGTGTAAGACCATATCTGAGATATGGCATCACTT
* *
29514307 TGAGACT-TCGTGTAAGGCCATGTCT-AGGATATGGCATCA
1 TGAGACTAT-GTGTAAGACCATATCTGA-GATATGGCATCA
29514346 ATGTGAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 2 0.06
42 33 0.94
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGACTATGTGTAAGACCATATCTGAGATATGGCATCACTT
Found at i:29514363 original size:42 final size:42
Alignment explanation
Indices: 29514275--29514363 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
29514265 TGAGACTATG
* * * *
29514275 TGTAAGACCATATCTGAGATATGGCATCACTTTGAGACTTCG
1 TGTAAGACCATATCTGAGATATGGCATCAATGTGAAACTTCA
* * *
29514317 TGTAAGGCCATGTCT-AGGATATGGCATCAATGTGAAATTTCA
1 TGTAAGACCATATCTGA-GATATGGCATCAATGTGAAACTTCA
29514359 TGTAA
1 TGTAA
29514364 AACCTTAGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 1 0.03
42 38 0.97
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGAGATATGGCATCAATGTGAAACTTCA
Found at i:29518688 original size:80 final size:79
Alignment explanation
Indices: 29518604--29518775 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
29518594 GGACTAAGAT
*
29518604 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
29518668 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
29518684 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
29518749 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
29518763 CCGAAGGCATTTG
1 CCGAAGGCATTTG
29518776 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:29518755 original size:39 final size:39
Alignment explanation
Indices: 29518551--29518773 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
29518541 TTGAATGCTG
* * * * *
29518551 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
29518591 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
29518630 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
29518671 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
29518711 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
29518750 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
29518774 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:29518793 original size:79 final size:80
Alignment explanation
Indices: 29518631--29518808 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
29518621 AGATACAAAT
* * * *
29518631 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
29518696 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
29518711 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
29518775 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
29518790 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
29518809 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:29520766 original size:39 final size:39
Alignment explanation
Indices: 29520711--29520854 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
29520701 CCAACACAAT
*
29520711 TGCCTTTGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
29520750 TGCCTTCAGGATTTAGCCTGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
29520789 TGCCTTCGGGACTTAGCCCGGATATAACATCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
29520828 TGCCTTTGGGACTTAGCCCGGATATAA
1 TGCCTTCGGGACTTAGCCCGGATATAA
29520855 ATCTCACACA
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 96 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:29542661 original size:225 final size:225
Alignment explanation
Indices: 29542270--29542719 Score: 875
Period size: 225 Copynumber: 2.0 Consensus size: 225
29542260 AATTTATATC
29542270 CGTGAAATTTTTGTCTTTTAATTTTGTCGTTTGAGTGCCGATTTAATAAAAAGGGCTTAATCGCG
1 CGTGAAATTTTTGTCTTTTAATTTTGTCGTTTGAGTGCCGATTTAATAAAAAGGGCTTAATCGCG
29542335 TAAAGTAAAAAGTTAATAGTTAAATATGAAAGTGCCTAATTGAACTTGTCTTATTAATATGAAGC
66 TAAAGTAAAAAGTTAATAGTTAAATATGAAAGTGCCTAATTGAACTTGTCTTATTAATATGAAGC
29542400 ACTTATAATGAAATTAAGCCATAACTAAATGAGTTGGACT-GTTATAACCATGAATTATAATGGT
131 ACTTATAATGAAATTAAGCCATAACTAAATGAGTTGGA-TGGTTATAACCATGAATTATAATGGT
29542464 TTAAAATTTTAATATAAAGGTTATATATGTA
195 TTAAAATTTTAATATAAAGGTTATATATGTA
29542495 CGTGAAATTTTTGTCTTTTAATTTTGTCGTTTGAGTGCCGATTTAATAAAAAGGGCTTAATCGCG
1 CGTGAAATTTTTGTCTTTTAATTTTGTCGTTTGAGTGCCGATTTAATAAAAAGGGCTTAATCGCG
29542560 TAAAGTAAAAAGTTAATAGTTAAATATGAAAGTGCCTAATTGAACTTGTCTTATTAATATGAAGC
66 TAAAGTAAAAAGTTAATAGTTAAATATGAAAGTGCCTAATTGAACTTGTCTTATTAATATGAAGC
*
29542625 ACTTATAATGCAATTAAGCCATAACTAAATGAGTTGGATGGTTATAACCATGAATTATAATGGTT
131 ACTTATAATGAAATTAAGCCATAACTAAATGAGTTGGATGGTTATAACCATGAATTATAATGGTT
29542690 TAAAATTTTAATATAAAGGTTATATATGTA
196 TAAAATTTTAATATAAAGGTTATATATGTA
29542720 AAATTATTAT
Statistics
Matches: 223, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
224 1 0.00
225 222 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (225 bp):
CGTGAAATTTTTGTCTTTTAATTTTGTCGTTTGAGTGCCGATTTAATAAAAAGGGCTTAATCGCG
TAAAGTAAAAAGTTAATAGTTAAATATGAAAGTGCCTAATTGAACTTGTCTTATTAATATGAAGC
ACTTATAATGAAATTAAGCCATAACTAAATGAGTTGGATGGTTATAACCATGAATTATAATGGTT
TAAAATTTTAATATAAAGGTTATATATGTA
Done.