Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 92 of 235
Found at i:31821787 original size:33 final size:33
Alignment explanation
Indices: 31821731--31821819 Score: 99
Period size: 33 Copynumber: 2.7 Consensus size: 33
31821721 GTAGCAGACA
* * *
31821731 CACCCTCCCCATCAGCTTGTACCTCTCCTACAT
1 CACCCTTCCCATCAGATTCTACCTCTCCTACAT
* * * *
31821764 CACCCTTCCCACCAGATTCTACCTTTTCTAGAT
1 CACCCTTCCCATCAGATTCTACCTCTCCTACAT
31821797 CA-CCTTCACCATCAGATTCTACC
1 CACCCTTC-CCATCAGATTCTACC
31821820 CCTTCATCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 5 0.11
33 42 0.89
ACGTcount: A:0.21, C:0.44, G:0.06, T:0.29
Consensus pattern (33 bp):
CACCCTTCCCATCAGATTCTACCTCTCCTACAT
Found at i:31821832 original size:33 final size:32
Alignment explanation
Indices: 31821758--31821833 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 32
31821748 TGTACCTCTC
**
31821758 CTACATCACCCTTCCCACCAGATTCTACCTTTT
1 CTACATCA-CCTTCCCACCAGATTCTACCCCTT
* *
31821791 CTAGATCACCTTCACCATCAGATTCTACCCCTT
1 CTACATCACCTTC-CCACCAGATTCTACCCCTT
31821824 C-ATCATCACC
1 CTA-CATCACC
31821834 CTCTCCAGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.24, C:0.42, G:0.04, T:0.30
Consensus pattern (32 bp):
CTACATCACCTTCCCACCAGATTCTACCCCTT
Found at i:31822619 original size:117 final size:117
Alignment explanation
Indices: 31822439--31822649 Score: 323
Period size: 117 Copynumber: 1.8 Consensus size: 117
31822429 GGTAACAGAA
* * * * * *
31822439 ATCAACATCATCTGGACCACTATCTCATCACAAATCAACAAAACAAACCCTACACTCTGGCACTG
1 ATCAACAACATCGGGACCACTATCGCATCAAAAATCAACAAAACAAACCCTACACTCTCGCACTC
*
31822504 AAATTGCAATAATAAATCACAATTAACCATCTACAACTTTTATAACAGTTTT
66 AAATTGCAATAATAAATCACAAATAACCATCTACAACTTTTATAACAGTTTT
* * *
31822556 ATCAACAACATCGGGACCACTATCGCATCAAAAATCGACAAAACAAACCCTACATTGTCGCACTC
1 ATCAACAACATCGGGACCACTATCGCATCAAAAATCAACAAAACAAACCCTACACTCTCGCACTC
*
31822621 AAATTGCAATACTAAATCACAAATAACCA
66 AAATTGCAATAATAAATCACAAATAACCA
31822650 ACAAATCAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 83 1.00
ACGTcount: A:0.43, C:0.27, G:0.07, T:0.23
Consensus pattern (117 bp):
ATCAACAACATCGGGACCACTATCGCATCAAAAATCAACAAAACAAACCCTACACTCTCGCACTC
AAATTGCAATAATAAATCACAAATAACCATCTACAACTTTTATAACAGTTTT
Found at i:31822877 original size:18 final size:16
Alignment explanation
Indices: 31822836--31822880 Score: 63
Period size: 16 Copynumber: 2.7 Consensus size: 16
31822826 AATGCTAACA
*
31822836 ATTTAGGTATTTGAAG
1 ATTTAGGGATTTGAAG
31822852 ATTTAGGGATTTGAAG
1 ATTTAGGGATTTGAAG
31822868 ATTGTTAGGGATT
1 A-T-TTAGGGATT
31822881 CAATGAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 16 0.62
17 1 0.04
18 9 0.35
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (16 bp):
ATTTAGGGATTTGAAG
Found at i:31829583 original size:36 final size:36
Alignment explanation
Indices: 31829536--31829606 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
31829526 ATGTCACTCT
31829536 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAGG
1 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAGG
31829572 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAG
1 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAG
31829607 ACAACAAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.31
Consensus pattern (36 bp):
AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAGG
Found at i:31837564 original size:23 final size:23
Alignment explanation
Indices: 31837534--31837579 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
31837524 TGTACTTAAA
31837534 CCACTAAATTACCTAAATTATGT
1 CCACTAAATTACCTAAATTATGT
31837557 CCACTAAATTACCTAAATTATGT
1 CCACTAAATTACCTAAATTATGT
31837580 TCGATCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (23 bp):
CCACTAAATTACCTAAATTATGT
Found at i:31839417 original size:43 final size:43
Alignment explanation
Indices: 31839336--31839419 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
31839326 ATATCGTACA
* **
31839336 ATGCCAACGTCCCAGACATGGTCTTACATGTAGCCACATATTG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
31839379 ATGCC-ACTGTCCCAGACAGGGTCTTAC-TCGTAAACACATAT
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATAT
31839420 CAAAATCACA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
Found at i:31842538 original size:17 final size:16
Alignment explanation
Indices: 31842518--31842560 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
31842508 GAAAATGAAG
*
31842518 AAAAATGAAAGCTTTCT
1 AAAAATGAAAG-TTTCC
*
31842535 AAAAATTAAAGTTTCC
1 AAAAATGAAAGTTTCC
31842551 AAAAATGAAA
1 AAAAATGAAA
31842561 AATTACTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (16 bp):
AAAAATGAAAGTTTCC
Found at i:31842556 original size:33 final size:35
Alignment explanation
Indices: 31842518--31842596 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 35
31842508 GAAAATGAAG
** * *
31842518 AAAAATGAAAGCTTTCT-AAAA-ATTAAAGTTTCC
1 AAAAATGAAAAATTACTAAAAATATTAAAGTTTCA
*
31842551 AAAAATGAAAAATTACTAAAAATATTAAATTTTCA
1 AAAAATGAAAAATTACTAAAAATATTAAAGTTTCA
31842586 AAAAATAGAAA
1 AAAAAT-GAAA
31842597 TTTTTTAAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
33 14 0.37
34 4 0.11
35 16 0.42
36 4 0.11
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.28
Consensus pattern (35 bp):
AAAAATGAAAAATTACTAAAAATATTAAAGTTTCA
Found at i:31842985 original size:13 final size:13
Alignment explanation
Indices: 31842967--31843001 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
31842957 CAAGAAATTC
31842967 AATTTCTACAAAG
1 AATTTCTACAAAG
31842980 AATTTCTACAAAG
1 AATTTCTACAAAG
31842993 AATTTCTAC
1 AATTTCTAC
31843002 GGTAACTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (13 bp):
AATTTCTACAAAG
Found at i:31843220 original size:20 final size:20
Alignment explanation
Indices: 31843184--31843223 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
31843174 TTAAAAAAAC
**
31843184 ATAATTATTCATTTAATATT
1 ATAATTATTCAAATAATATT
31843204 ATAATTATTCAAATAATATT
1 ATAATTATTCAAATAATATT
31843224 GTTTGAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
ATAATTATTCAAATAATATT
Found at i:31854878 original size:22 final size:23
Alignment explanation
Indices: 31854834--31854879 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
31854824 ATTTTTCAAT
*
31854834 GACACAAGGTCACACGCCCGTGTG
1 GACACAAGG-CACACACCCGTGTG
*
31854858 GACACAAGG-ACACACCTGTGTG
1 GACACAAGGCACACACCCGTGTG
31854880 CCTTCAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
24 9 0.45
ACGTcount: A:0.28, C:0.30, G:0.28, T:0.13
Consensus pattern (23 bp):
GACACAAGGCACACACCCGTGTG
Found at i:31856708 original size:55 final size:53
Alignment explanation
Indices: 31856540--31856769 Score: 261
Period size: 55 Copynumber: 4.2 Consensus size: 53
31856530 TACAAAAGGA
* *
31856540 ATGGTCTTATATGGAACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGAC
1 ATGGTCTTACATGGAACC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGAC
* **
31856595 ATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCA-CTAATGCCATGCCTTGGT
1 ATGGTCTTACATGG-AACCTTGCCTTATAGAACTCATC-AATGCCATGCCTTGAC
* *
31856648 ATGGTCTTACATAGG-ACCTTTGCCTTATAGTAACTCATCAATGCTATGTCTTGAC
1 ATGGTCTTACAT-GGAACC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGAC
* * *
31856703 ATGGTCTTACAT-GATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 ATGGTCTTACATGGA--ACCTTGCCTTATAGAACTCATCAATGCCATGCCTTGAC
31856757 ATGGTCTTACATG
1 ATGGTCTTACATG
31856770 ATATCCTTAT
Statistics
Matches: 149, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
52 3 0.02
53 41 0.28
54 36 0.24
55 63 0.42
56 6 0.04
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (53 bp):
ATGGTCTTACATGGAACCTTGCCTTATAGAACTCATCAATGCCATGCCTTGAC
Found at i:31856729 original size:108 final size:109
Alignment explanation
Indices: 31856540--31856769 Score: 367
Period size: 108 Copynumber: 2.1 Consensus size: 109
31856530 TACAAAAGGA
*
31856540 ATGGTCTTATATGGAACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTAC
1 ATGGTCTTACATGGAACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTAC
* *
31856605 ATGGTATCCTTGCCTTAT-GAACTCA-CTAATGCCATGCCTTGGT
66 ATGATATCCTTGCCTTATAGAACTCATC-AATGCCATGCCTTGGC
*
31856648 ATGGTCTTACATAGG-ACCTTTGCCTTATAGTAACTCATCAATGCTATGTCTTGACATGGTCTTA
1 ATGGTCTTACAT-GGAACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTA
* *
31856712 CATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
65 CATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
31856757 ATGGTCTTACATG
1 ATGGTCTTACATG
31856770 ATATCCTTAT
Statistics
Matches: 113, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
108 77 0.68
109 35 0.31
110 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (109 bp):
ATGGTCTTACATGGAACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTAC
ATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
Found at i:31857018 original size:44 final size:44
Alignment explanation
Indices: 31856967--31857053 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
31856957 GTATCCTTAA
* *
31856967 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* *
31857011 CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
31857054 GAGATATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:31857608 original size:50 final size:50
Alignment explanation
Indices: 31857535--31857636 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
31857525 CTAGGATCTA
31857535 AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
1 AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
* *
31857585 AAACATCATATTTCACTTATTTAATTAATTTACTATTCAAAATATTCCCT
1 AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
31857635 AA
1 AA
31857637 CTCAAACTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.39, C:0.19, G:0.01, T:0.41
Consensus pattern (50 bp):
AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
Found at i:31863046 original size:53 final size:53
Alignment explanation
Indices: 31862968--31863190 Score: 243
Period size: 53 Copynumber: 4.2 Consensus size: 53
31862958 TCAGGAACCT
* * * * *
31862968 TTTCCTTTTTGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCC
1 TTTCC-TTATGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC
* * * * *
31863022 TTGCCTTGTGAACTCACCAATGCCATGCCTTGGCATGGTCTTATATGG-AACC
1 TTTCCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC
* *
31863074 TTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
1 -TTTCCTTAT-G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC
* * * *
31863130 TTTCCCTATGAACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CC
1 TTTCCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC
31863182 TTTGCCTTA
1 TTT-CCTTA
31863191 NCTTATATGG
Statistics
Matches: 141, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
52 8 0.06
53 82 0.58
54 6 0.04
55 42 0.30
56 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (53 bp):
TTTCCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC
Found at i:31863183 original size:108 final size:108
Alignment explanation
Indices: 31862989--31863190 Score: 332
Period size: 108 Copynumber: 1.9 Consensus size: 108
31862979 AACTTACCAT
* * *
31862989 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTGTGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCCTATGAACTCACCAATGCCATGCCTTG
* *
31863054 GCATGGTCTTATATGGAACCTTTTCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGAACCTTTGCCTTATAGTAACTCATCAA
* *
31863097 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCCTATGAACTCACTAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCCTATGAACTCACCAATGCCATGCCTTG
*
31863162 GCATGGTCTTACATGGGACCTTTGCCTTA
66 GCATGGTCTTACATGGAACCTTTGCCTTA
31863191 NCTTATATGG
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 86 1.00
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCCTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGGAACCTTTGCCTTATAGTAACTCATCAA
Found at i:31863195 original size:23 final size:22
Alignment explanation
Indices: 31863169--31863213 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
31863159 TTGGCATGGT
*
31863169 CTTACATGGGACCTTTGCCTTA
1 CTTACATGGAACCTTTGCCTTA
* *
31863191 NCTTATATGGAACCTTTTCCTTA
1 -CTTACATGGAACCTTTGCCTTA
31863214 TAGTAACTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.40
Consensus pattern (22 bp):
CTTACATGGAACCTTTGCCTTA
Found at i:31863217 original size:131 final size:131
Alignment explanation
Indices: 31863061--31863308 Score: 410
Period size: 131 Copynumber: 1.9 Consensus size: 131
31863051 TTGGCATGGT
*
31863061 CTTATATGGAACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGT
1 CTTATATGGAACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGAT
*
31863126 ATCCTTTCCCTAT-GAACTCACT-AATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCT
66 ATCCTTGCCCTATAGAACT-ACTCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCT
31863189 TA
130 TA
31863191 NCTTATATGGAACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGA
1 -CTTATATGGAACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGA
* * **
31863256 TTTCCTTGCCTTATAGAACTTGTCAATGCCATGCCTTGGCATGGTCTTACATG
65 TATCCTTGCCCTATAGAACTACTCAATGCCATGCCTTGGCATGGTCTTACATG
31863309 CTGTCCTTAT
Statistics
Matches: 109, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
131 75 0.69
132 34 0.31
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (131 bp):
CTTATATGGAACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGAT
ATCCTTGCCCTATAGAACTACTCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTT
A
Found at i:31863316 original size:54 final size:55
Alignment explanation
Indices: 31863209--31863316 Score: 155
Period size: 54 Copynumber: 2.0 Consensus size: 55
31863199 GGAACCTTTT
* *
31863209 CCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATGTCCTTG
** * *
31863264 CCTTATAG-AACTTGTCAATGCCATGCCTTGGCATGGTCTTACATGCTGTCCTT
1 CCTTATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATGTCCTT
31863317 ATCTTACCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 39 0.83
55 8 0.17
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (55 bp):
CCTTATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATGTCCTTG
Found at i:31863350 original size:47 final size:47
Alignment explanation
Indices: 31863295--31863410 Score: 187
Period size: 47 Copynumber: 2.5 Consensus size: 47
31863285 CATGCCTTGG
*
31863295 CATGGTCTTACATGCTGTCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGCTATCCTTATCTTACCAAATGCCATGTTCCAAA
* * *
31863342 CATGGTCTTACATGGTATCTTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGCTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
31863389 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGCTATCCTT
31863411 GTATTAGTGC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGCTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:31863605 original size:44 final size:45
Alignment explanation
Indices: 31863556--31863640 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 45
31863546 TCCTTAATCG
* **
31863556 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTACAAACCATGGACTTTTCCA
* *
31863600 TCAATTCTTCCTTAATTGCCATGGTACAAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAAACCATGGACTTT
31863641 GAGATATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 25 0.71
45 10 0.29
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (45 bp):
TCAATTCCTCCTTAAATGCCATGGTACAAACCATGGACTTTTCCA
Found at i:31866550 original size:48 final size:46
Alignment explanation
Indices: 31866479--31866654 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
31866469 AGGGTGGATT
* * *
31866479 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCTCGTATCGAG
* * * * * *
31866527 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCTTGTCTCAAT
1 GCCGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCTCGTATCGAG
* * *
31866575 GCCAAGGCCATGTCCAACATGGTCTTACACTGGCTCTCGTAAT-GTG
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCGT-ATCGAG
31866621 GCCGATGCCATGTCCAACATGGTCTTACACTGGC
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGC
31866655 CTACATATCA
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
46 53 0.49
47 4 0.04
48 51 0.47
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCGTATCGAG
Found at i:31869897 original size:52 final size:51
Alignment explanation
Indices: 31869780--31869957 Score: 261
Period size: 51 Copynumber: 3.5 Consensus size: 51
31869770 CAGATACCCG
* * * * *
31869780 GTGGCCTACACATAGTACCACCCTTGTAATCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
31869831 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
*
31869883 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
* *
31869932 GTCGCCTTCACATAGTACCATACTTG
1 GTGGCCTTCACATAGTACCACACTTG
31869958 AGTCACTAGT
Statistics
Matches: 118, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
49 33 0.28
51 43 0.36
52 42 0.36
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:31869945 original size:49 final size:50
Alignment explanation
Indices: 31869780--31869957 Score: 250
Period size: 52 Copynumber: 3.5 Consensus size: 50
31869770 CAGATACCCG
* * * * *
31869780 GTGGCCTACACATAGTACCACCCTTGTAATCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAGCTATCTTCTTCACAAA
31869831 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TTCTTCACAAA
*
31869883 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAA
* *
31869932 GTCGCCTTCACATAGTACCATACTTG
1 GTGGCCTTCACATAGTACCACACTTG
31869958 AGTCACTAGT
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
49 33 0.28
50 1 0.01
51 41 0.35
52 42 0.36
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAA
Found at i:31874589 original size:22 final size:22
Alignment explanation
Indices: 31874561--31874606 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
31874551 TTTCACACTT
31874561 TTCGTTTCTATCATCGAATGCA
1 TTCGTTTCTATCATCGAATGCA
31874583 TTCGTTTCTATCATCGAATGCA
1 TTCGTTTCTATCATCGAATGCA
31874605 TT
1 TT
31874607 TGTAGAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (22 bp):
TTCGTTTCTATCATCGAATGCA
Found at i:31876646 original size:22 final size:22
Alignment explanation
Indices: 31876618--31876663 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
31876608 TTTCACACTT
31876618 TTCGTTTCTATCATCGAATGCA
1 TTCGTTTCTATCATCGAATGCA
31876640 TTCGTTTCTATCATCGAATGCA
1 TTCGTTTCTATCATCGAATGCA
31876662 TT
1 TT
31876664 TGTAGAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (22 bp):
TTCGTTTCTATCATCGAATGCA
Found at i:31878075 original size:27 final size:27
Alignment explanation
Indices: 31878018--31878150 Score: 78
Period size: 27 Copynumber: 4.9 Consensus size: 27
31878008 AACAATAGTT
* * *
31878018 AAAAGTTATTAAAATTATATTCATATT
1 AAAAATTATTAAAATTATATTAATATA
*
31878045 AAAAATTATTTAAATTATA-TAATACTA
1 AAAAATTATTAAAATTATATTAATA-TA
* *
31878072 AAAAATATATT--AATTTTTTTAATATTA
1 AAAAAT-TATTAAAATTATATTAATA-TA
* * *
31878099 AATAATAATTAATATTATATT--TATA
1 AAAAATTATTAAAATTATATTAATATA
* *
31878124 ATAAAATTGATATAAAAATATAGTAAT
1 A-AAAATT-AT-TAAAATTATATTAAT
31878151 TCAGGAGAAA
Statistics
Matches: 79, Mismatches: 17, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
25 3 0.04
26 18 0.23
27 38 0.48
28 19 0.24
30 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
AAAAATTATTAAAATTATATTAATATA
Found at i:31878086 original size:26 final size:27
Alignment explanation
Indices: 31878024--31878129 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 27
31878014 AGTTAAAAGT
* * * *
31878024 TATTAAAATTATATTCATATTAAAAAT
1 TATTTAAATTATATTAATACTAAAAAA
31878051 TATTTAAATTATA-TAATACTAAAAAA
1 TATTTAAATTATATTAATACTAAAAAA
* * * *
31878077 TATATT-AATTTTTTTAATATTAAATAA
1 TAT-TTAAATTATATTAATACTAAAAAA
* * *
31878104 TAATTAATATTATATTTATAATAAAA
1 TATTTAA-ATTATATTAATACTAAAA
31878130 TTGATATAAA
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
26 20 0.33
27 28 0.46
28 13 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
TATTTAAATTATATTAATACTAAAAAA
Found at i:31885185 original size:45 final size:45
Alignment explanation
Indices: 31885055--31885187 Score: 143
Period size: 45 Copynumber: 3.0 Consensus size: 45
31885045 ATGCTATCTC
* * * *
31885055 ATATCGATGCCACTGTCCCAAACAGGGTCTTACACAA-ATCA-A-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACAAGAACACAT
* *
31885097 ATAT-GATGCCGATGTCCCAGACATGGTCTTACTC--GTAACCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACAAG-AA-CACAT
*
31885141 ATATCGATGCCAATGTCCCAGACTTGGTCTTACACAAGAACACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACAAGAACACAT
31885186 AT
1 AT
31885188 CAAAAATCCT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
41 26 0.35
42 6 0.08
43 1 0.01
44 4 0.05
45 34 0.46
46 2 0.03
47 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACAAGAACACAT
Found at i:31888822 original size:17 final size:15
Alignment explanation
Indices: 31888800--31888833 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
31888790 TGGTGATTCA
31888800 AGTATGTGATATATATG
1 AGTATGTGA-ATAT-TG
31888817 AGTATGTGAATATTG
1 AGTATGTGAATATTG
31888832 AG
1 AG
31888834 ACCTATGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.38
Consensus pattern (15 bp):
AGTATGTGAATATTG
Found at i:31889111 original size:50 final size:50
Alignment explanation
Indices: 31889031--31889146 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 50
31889021 GGTATTAGTA
* * *
31889031 GTGGCTAGTCCACAAAGTGTTATAAATGGCAGCATATCTGCATATCAGTG
1 GTGGCTTGTCCACAAAGTGTTATAAATGGCAACATATCTGCAAATCAGTG
* * ** *
31889081 GTGGCTTGTCCACAAAGTGTTATCAGTGGCAATTTATCTGCAAATTAGTG
1 GTGGCTTGTCCACAAAGTGTTATAAATGGCAACATATCTGCAAATCAGTG
* *
31889131 GTCGTTTGTCCACAAA
1 GTGGCTTGTCCACAAA
31889147 TGGTGATTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (50 bp):
GTGGCTTGTCCACAAAGTGTTATAAATGGCAACATATCTGCAAATCAGTG
Found at i:31892204 original size:21 final size:21
Alignment explanation
Indices: 31892164--31892206 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
31892154 TTTTTCCTAA
*
31892164 AATATGAATTCGATTGAATTG
1 AATATGAATTCGATTAAATTG
31892185 AATATGAATT-GTATTAAATTG
1 AATATGAATTCG-ATTAAATTG
31892206 A
1 A
31892207 GTTAAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (21 bp):
AATATGAATTCGATTAAATTG
Found at i:31892704 original size:26 final size:27
Alignment explanation
Indices: 31892631--31892843 Score: 83
Period size: 25 Copynumber: 8.6 Consensus size: 27
31892621 GCACACCGTA
*
31892631 GCTCTT-ATGAGCGTCCTG-TTATATG
1 GCTCTTCATGAGCTTCCTGATTATATG
**
31892656 GCTCTTCATGAGCTTCCCAATTATA-G
1 GCTCTTCATGAGCTTCCTGATTATATG
**
31892682 GCTCTTTTTGAGCTTCCTGATTA-ATG
1 GCTCTTCATGAGCTTCCTGATTATATG
* *
31892708 GATC-TC-TAGAGCTACCTG----TATG
1 GCTCTTCAT-GAGCTTCCTGATTATATG
* *
31892730 GCTC-GCTTGAGCTT-CTCGA-TATATG
1 GCTCTTCATGAGCTTCCT-GATTATATG
* ** *
31892755 GCT-ATCCGGAGCTTCCCGATTA-ATG
1 GCTCTTCATGAGCTTCCTGATTATATG
* * * *
31892780 GCTCTT-AAGAGGTACCCG-TTAT-TG
1 GCTCTTCATGAGCTTCCTGATTATATG
* *
31892804 GCTC-GCATTAGCTTCCTGA-T-TATG
1 GCTCTTCATGAGCTTCCTGATTATATG
31892828 GCTCTT-ATGAGCTTCC
1 GCTCTTCATGAGCTTCC
31892844 CGTTATACAG
Statistics
Matches: 139, Mismatches: 30, Indels: 39
0.67 0.14 0.19
Matches are distributed among these distances:
21 2 0.01
22 13 0.09
23 2 0.01
24 33 0.24
25 47 0.34
26 37 0.27
27 5 0.04
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GCTCTTCATGAGCTTCCTGATTATATG
Found at i:31892770 original size:72 final size:73
Alignment explanation
Indices: 31892691--31892830 Score: 173
Period size: 72 Copynumber: 1.9 Consensus size: 73
31892681 GGCTCTTTTT
* *
31892691 GAGCTTCCTGATTAATGGATCTCT-AGAGCTACCTG-TA-TGGCTCGC-TTGAGCTT-CTCGATA
1 GAGCTTCCCGATTAATGGATCT-TAAGAGCTACCCGTTATTGGCTCGCATT-AGCTTCCT-GAT-
31892751 TATGGCTATCCG
62 TATGGCTATCCG
* *
31892763 GAGCTTCCCGATTAATGGCTCTTAAGAGGTACCCGTTATTGGCTCGCATTAGCTTCCTGATTATG
1 GAGCTTCCCGATTAATGGATCTTAAGAGCTACCCGTTATTGGCTCGCATTAGCTTCCTGATTATG
31892828 GCT
66 GCT
31892831 CTTATGAGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
71 1 0.02
72 29 0.49
73 9 0.15
74 16 0.27
75 4 0.07
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (73 bp):
GAGCTTCCCGATTAATGGATCTTAAGAGCTACCCGTTATTGGCTCGCATTAGCTTCCTGATTATG
GCTATCCG
Found at i:31892866 original size:49 final size:49
Alignment explanation
Indices: 31892764--31892889 Score: 130
Period size: 49 Copynumber: 2.6 Consensus size: 49
31892754 GGCTATCCGG
* ** * * *
31892764 AGCTTCCCGATTAATGGCTCTTAAGAGGTACCCGTTATTGGCTCGCATT
1 AGCTTCCCGATTAATGGCTCTTAAGAGCTACCCGTTATCAGCCCGAATA
* * *
31892813 AGCTTCCTGATT-ATGGCTCTTATGAGCTTCCCGTTATACAGCCCGAATA
1 AGCTTCCCGATTAATGGCTCTTAAGAGCTACCCGTTAT-CAGCCCGAATA
* *
31892862 AGCTTCCC-ATTAATGACTCTCAAGAGCT
1 AGCTTCCCGATTAATGGCTCTTAAGAGCT
31892890 TCCTATTATA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
48 25 0.40
49 37 0.60
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (49 bp):
AGCTTCCCGATTAATGGCTCTTAAGAGCTACCCGTTATCAGCCCGAATA
Found at i:31900069 original size:48 final size:48
Alignment explanation
Indices: 31899962--31900186 Score: 161
Period size: 48 Copynumber: 4.7 Consensus size: 48
31899952 TATGTGCGCC
* ** * ** *
31899962 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACATTATGAAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGA-TAGGCGAGCT
** ** * *
31900010 AAAGTAAGACCATGTCTAGGACATGGCATCGGTGTTGATATGCGAGGT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAGGCGAGCT
* * * * * * *
31900058 AGTGTAGGACCATGTTTGGGTCATGGCATTGGCATTGATAGGTGCGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAGGCGAGCT
* ** * *
31900106 AGTGTAAGACCATGTCTGGGGTATGGCATTGGCATT-A-AGACAAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAGGC--GAGCT
31900154 AGTGTAAGACCATGTCT-GAGACATGGCATCGGC
1 AGTGTAAGACCATGTCTAG-GACATGGCATCGGC
31900187 CTCGACATAT
Statistics
Matches: 140, Mismatches: 33, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
46 2 0.01
47 2 0.01
48 134 0.96
49 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAGGCGAGCT
Found at i:31901078 original size:26 final size:26
Alignment explanation
Indices: 31901001--31901175 Score: 201
Period size: 26 Copynumber: 6.8 Consensus size: 26
31900991 CCTCTTTAAT
*
31901001 AACTGGGGCA-AAGCCCTTTTCTGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
31901026 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* * *
31901051 AACTAGGGCATAATCCCTTTCCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* * *
31901077 AACTGGGACATAAGTCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
31901103 AACTGGCGCATAAGCTCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
31901129 AACTGGGGCATAAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
31901155 AATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
31901176 GCACTTCCTC
Statistics
Matches: 124, Mismatches: 25, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
25 32 0.26
26 92 0.74
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:31902074 original size:27 final size:27
Alignment explanation
Indices: 31901979--31902065 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
31901969 TATTCGTCAT
* *
31901979 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
*
31902006 TTTACCCTACAAGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
*
31902033 TTTACCCTACAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
31902060 TTTACC
1 TTTACC
31902066 TAATAGGGGT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:31902149 original size:27 final size:27
Alignment explanation
Indices: 31902123--31902428 Score: 172
Period size: 27 Copynumber: 11.3 Consensus size: 27
31902113 ATCTACAAAC
*
31902123 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
31902150 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
*
31902179 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
31902206 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** * ** *
31902233 TGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * * ** *
31902260 CAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * ** * *
31902286 CTAGGATATTTTTGTAATTTTACT-GAT
1 CAAGGGTATTTCAGTAATTTT-GTAAAT
* ** *
31902313 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
31902340 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** *
31902367 CGAGGGTAAAAT-AGTAATTCTGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
*** *
31902394 CAAGGGTAAAACAGTAATTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
31902421 CAAGGGTA
1 CAAGGGTA
31902429 AAACGGCAAT
Statistics
Matches: 223, Mismatches: 45, Indels: 22
0.77 0.16 0.08
Matches are distributed among these distances:
26 23 0.10
27 172 0.77
28 9 0.04
29 18 0.08
30 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:31902318 original size:80 final size:80
Alignment explanation
Indices: 31902212--31902360 Score: 217
Period size: 80 Copynumber: 1.9 Consensus size: 80
31902202 AAATCAGGGG
* *
31902212 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTAGCAA
1 TATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGCAA
31902277 TTTTACAGACTAGGA
66 TTTTACAGACTAGGA
* ** * ** *
31902292 TATTTTTGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAA
1 TATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGCAA
31902357 TTTT
66 TTTT
31902361 GTAAATCGAG
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 60 1.00
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (80 bp):
TATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGCAA
TTTTACAGACTAGGA
Found at i:31902369 original size:54 final size:54
Alignment explanation
Indices: 31902096--31902428 Score: 213
Period size: 54 Copynumber: 6.1 Consensus size: 54
31902086 TTTCATCCTA
* * * * * * *
31902096 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTGTAAAT
* * *
31902150 CAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-TCAAGGGTATTTCAGTAATTTTGTAAAT
* * * ** * ** *
31902206 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTGTAAAT
* * * * * * ** * *
31902260 CAGGGGTATTTTAGCAATTTTACAGA-CTAGGATATTTTTGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTCAGTAATTTT-GTAAAT
* * * * *
31902313 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTGTAAAT
* *** * * *** *
31902367 CGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTTTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTGTAAAT
31902421 CAAGGGTA
1 CAAGGGTA
31902429 AAACGGCAAT
Statistics
Matches: 217, Mismatches: 55, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
53 37 0.17
54 127 0.59
55 16 0.07
56 37 0.17
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:31902429 original size:27 final size:27
Alignment explanation
Indices: 31902352--31902536 Score: 226
Period size: 27 Copynumber: 6.9 Consensus size: 27
31902342 AGGGTATTTT
* *
31902352 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
31902379 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
31902406 AGTAATTTTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
31902433 GGCAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
31902460 GGTAATTCTATAAATCGATGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
31902487 GGTAATTCTATAAATCGAGGGTAGAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
31902514 AGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
31902537 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:31903377 original size:11 final size:11
Alignment explanation
Indices: 31903361--31903391 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
31903351 AGCTATGAAT
31903361 ATGATTTTGGG
1 ATGATTTTGGG
31903372 ATGATTTTGGG
1 ATGATTTTGGG
31903383 ATGATTTTG
1 ATGATTTTG
31903392 TAAACTTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.32, T:0.48
Consensus pattern (11 bp):
ATGATTTTGGG
Found at i:31905948 original size:20 final size:20
Alignment explanation
Indices: 31905911--31905954 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
31905901 TTTTCTTTTA
* *
31905911 TTTATTTTATTTATTTATGT
1 TTTATATTATTTATTTATAT
31905931 TTTATATTA-TTATATTATAT
1 TTTATATTATTTAT-TTATAT
31905951 TTTA
1 TTTA
31905955 GTAATAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTATATTATTTATTTATAT
Found at i:31935971 original size:13 final size:14
Alignment explanation
Indices: 31935953--31935981 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
31935943 TAGCCGCGTG
31935953 TTCTTTTC-TTCTT
1 TTCTTTTCTTTCTT
31935966 TTCTTTTCTTTCTT
1 TTCTTTTCTTTCTT
31935980 TT
1 TT
31935982 TCTAATTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTCTTTTCTTTCTT
Found at i:31950434 original size:34 final size:33
Alignment explanation
Indices: 31950380--31950446 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
31950370 AGTGGTTCAG
* *
31950380 AACATTATATATATAAATGGTAAAAAATAATAA
1 AACATTAAATATAAAAATGGTAAAAAATAATAA
*
31950413 AACATTAAATATTAAAAATGGTAAAAAATTATAA
1 AACATTAAATA-TAAAAATGGTAAAAAATAATAA
31950447 TAATTCTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 10 0.33
34 20 0.67
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (33 bp):
AACATTAAATATAAAAATGGTAAAAAATAATAA
Found at i:31950465 original size:25 final size:26
Alignment explanation
Indices: 31950437--31950485 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
31950427 AAAATGGTAA
* *
31950437 AAAATTATAATAATTC-TAAAAAATT
1 AAAATTATAAAAAATCATAAAAAATT
*
31950462 AAAATTTTAAAAAATCATAAAAAA
1 AAAATTATAAAAAATCATAAAAAA
31950486 CAAAAGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
AAAATTATAAAAAATCATAAAAAATT
Found at i:31950466 original size:35 final size:34
Alignment explanation
Indices: 31950394--31950483 Score: 85
Period size: 34 Copynumber: 2.6 Consensus size: 34
31950384 TTATATATAT
* *
31950394 AAATGGTAAAAAATAATAAAACATTAAATATTAA
1 AAATGGTAAAAAATAATAAAACATAAAAAATTAA
*
31950428 AAATGGTAAAAAATTATAATAATTC-TAAAAAATT-A
1 AAATGGTAAAAAATAATAA-AA--CATAAAAAATTAA
** *
31950463 AAATTTTAAAAAATCATAAAA
1 AAATGGTAAAAAATAATAAAA
31950484 AACAAAAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
34 20 0.43
35 19 0.40
36 7 0.15
37 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.29
Consensus pattern (34 bp):
AAATGGTAAAAAATAATAAAACATAAAAAATTAA
Found at i:31950472 original size:16 final size:18
Alignment explanation
Indices: 31950434--31950481 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
31950424 TTAAAAATGG
31950434 TAAAAAATTATAATAATTC
1 TAAAAAA-TATAATAATTC
*
31950453 TAAAAAAT-TAA-AATTT
1 TAAAAAATATAATAATTC
31950469 TAAAAAATCATAA
1 TAAAAAAT-ATAA
31950482 AAAACAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 12 0.46
17 3 0.12
18 4 0.15
19 7 0.27
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAAATATAATAATTC
Found at i:31950514 original size:19 final size:19
Alignment explanation
Indices: 31950434--31950540 Score: 73
Period size: 19 Copynumber: 5.8 Consensus size: 19
31950424 TTAAAAATGG
*
31950434 TAAAAAATTATAATAAT-T
1 TAAAAAATTATAAAAATAT
*
31950452 CTAAAAAA-T-T-AAAATTT
1 -TAAAAAATTATAAAAATAT
*
31950469 TAAAAAATCATAAAAA-A-
1 TAAAAAATTATAAAAATAT
* *
31950486 CAAAAGAATTTTAAAAATAT
1 TAAAA-AATTATAAAAATAT
** *
31950506 TTTAAAATTATAAAATTAT
1 TAAAAAATTATAAAAATAT
*
31950525 TAAAAAATTGTAAAAA
1 TAAAAAATTATAAAAA
31950541 ACTGAAAATA
Statistics
Matches: 66, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
16 11 0.17
17 6 0.09
18 11 0.17
19 36 0.55
20 2 0.03
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAAAATTATAAAAATAT
Found at i:31950912 original size:10 final size:10
Alignment explanation
Indices: 31950899--31950981 Score: 58
Period size: 9 Copynumber: 8.9 Consensus size: 10
31950889 TTTTGACAAT
31950899 TTTTTAATAA
1 TTTTTAATAA
31950909 -TTTT--TAA
1 TTTTTAATAA
31950916 TTTTTAAT-A
1 TTTTTAATAA
*
31950925 TTTTTACCT--
1 TTTTTA-ATAA
*
31950934 TTTTAAATAA
1 TTTTTAATAA
31950944 -TTTT-ATAA
1 TTTTTAATAA
31950952 TTATTT-ATAA
1 TT-TTTAATAA
31950962 TTTTTAATAA
1 TTTTTAATAA
31950972 TTTTATAATA
1 TTTT-TAATA
31950982 TTCTAAACCA
Statistics
Matches: 59, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
7 3 0.05
8 9 0.15
9 23 0.39
10 19 0.32
11 5 0.08
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:31950919 original size:18 final size:18
Alignment explanation
Indices: 31950896--31950969 Score: 82
Period size: 18 Copynumber: 4.2 Consensus size: 18
31950886 CTATTTTGAC
31950896 AATTTTTTAATAATTTTT
1 AATTTTTTAATAATTTTT
31950914 AA-TTTTTAAT-ATTTTT
1 AATTTTTTAATAATTTTT
* *
31950930 ACCTTTTTAAATAATTTTAT
1 A-ATTTTTTAATAATTTT-T
*
31950950 AATTATTT-ATAATTTTT
1 AATTTTTTAATAATTTTT
31950967 AAT
1 AAT
31950970 AATTTTATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
16 7 0.15
17 12 0.26
18 17 0.36
19 9 0.19
20 2 0.04
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
AATTTTTTAATAATTTTT
Found at i:31950944 original size:28 final size:27
Alignment explanation
Indices: 31950913--31950983 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 27
31950903 TAATAATTTT
* *
31950913 TAATTTT-TAATATTTTTACCTTTTTAAA
1 TAATTTTATAATATTTATA-ATTTTT-AA
31950941 TAATTTTATAATTATTTATAATTTTTAA
1 TAATTTTATAA-TATTTATAATTTTTAA
31950969 TAATTTTATAATATT
1 TAATTTTATAATATT
31950984 CTAAACCATC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.10
28 20 0.51
29 8 0.21
30 7 0.18
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (27 bp):
TAATTTTATAATATTTATAATTTTTAA
Found at i:31950980 original size:18 final size:17
Alignment explanation
Indices: 31950899--31950969 Score: 83
Period size: 17 Copynumber: 4.1 Consensus size: 17
31950889 TTTTGACAAT
31950899 TTTTTAATAATTTTTAA
1 TTTTTAATAATTTTTAA
*
31950916 TTTTTAAT-ATTTTTACC
1 TTTTTAATAATTTTTA-A
31950933 TTTTTAAATAATTTTATAA
1 TTTTT-AATAATTTT-TAA
31950952 TTATTT-ATAATTTTTAA
1 TT-TTTAATAATTTTTAA
31950969 T
1 T
31950970 AATTTTATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
16 7 0.15
17 17 0.36
18 11 0.23
19 7 0.15
20 5 0.11
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTTAATAATTTTTAA
Found at i:31962325 original size:44 final size:44
Alignment explanation
Indices: 31962262--31962351 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
31962252 TTTAATCTCT
31962262 TCATACACCTTTTTAAACTCCGTAAAATAGGCTTCGAGAGACTA
1 TCATACACCTTTTTAAACTCCGTAAAATAGGCTTCGAGAGACTA
*
31962306 TCATACACGTTTTTAAACTCCGTAAAATAGGCTTCGAGAGACTA
1 TCATACACCTTTTTAAACTCCGTAAAATAGGCTTCGAGAGACTA
31962350 TC
1 TC
31962352 TTGTTTCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (44 bp):
TCATACACCTTTTTAAACTCCGTAAAATAGGCTTCGAGAGACTA
Found at i:31964346 original size:188 final size:188
Alignment explanation
Indices: 31964029--31964407 Score: 713
Period size: 188 Copynumber: 2.0 Consensus size: 188
31964019 GTATTGCCAG
31964029 GTTATTTGCATATCACATTCTTCACTTTATTCTCTCCTAAGGAAAATTTCTCTTTAAAAATTTAG
1 GTTATTTGCATATCACATTCTTCACTTTATTCTCTCCTAAGGAAAATTTCTCTTTAAAAATTTAG
31964094 TATGGTTAAAGCCCTTTCACTCATTGTCTAACTTCATGTTTGGAATGAGATGGTCAGTAGAAAGA
66 TATGGTTAAAGCCCTTTCACTCATTGTCTAACTTCATGTTTGGAATGAGATGGTCAGTAGAAAGA
31964159 TTTCTGCTGTGGGTGTCAGAGTAATTACTTCTATGTGAGCTGCTCACCACAACTAAAA
131 TTTCTGCTGTGGGTGTCAGAGTAATTACTTCTATGTGAGCTGCTCACCACAACTAAAA
31964217 GTTATTTGCATATCACATTCTTCACTTTATTCTCTCCTAAGGAAAATTTCTCTTTAAAAATTTAG
1 GTTATTTGCATATCACATTCTTCACTTTATTCTCTCCTAAGGAAAATTTCTCTTTAAAAATTTAG
* * *
31964282 TATGGTTAAAGCTCTTTCACTCGTTGTCTAACTTCATGTTTGGAATGAGATGGTCATTAGAAAGA
66 TATGGTTAAAGCCCTTTCACTCATTGTCTAACTTCATGTTTGGAATGAGATGGTCAGTAGAAAGA
* *
31964347 TTTCTGTTGTGGGTGTGAGAGTAATTACTTCTATGTGAGCTGCTCACCACAACTAAAA
131 TTTCTGCTGTGGGTGTCAGAGTAATTACTTCTATGTGAGCTGCTCACCACAACTAAAA
31964405 GTT
1 GTT
31964408 GATGTTCGTG
Statistics
Matches: 186, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
188 186 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (188 bp):
GTTATTTGCATATCACATTCTTCACTTTATTCTCTCCTAAGGAAAATTTCTCTTTAAAAATTTAG
TATGGTTAAAGCCCTTTCACTCATTGTCTAACTTCATGTTTGGAATGAGATGGTCAGTAGAAAGA
TTTCTGCTGTGGGTGTCAGAGTAATTACTTCTATGTGAGCTGCTCACCACAACTAAAA
Found at i:31974124 original size:11 final size:11
Alignment explanation
Indices: 31974108--31974133 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
31974098 TGTTATTACT
31974108 TAAAATAAAAA
1 TAAAATAAAAA
31974119 TAAAATAAAAA
1 TAAAATAAAAA
31974130 TAAA
1 TAAA
31974134 TGATAATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:32007307 original size:48 final size:47
Alignment explanation
Indices: 32007196--32007319 Score: 144
Period size: 48 Copynumber: 2.6 Consensus size: 47
32007186 CTCAATTGAT
* *
32007196 AAGTACTTATACCATGGCCCGTAACC-AATCAAGGTAACTTATCCCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCA
* * * * **
32007242 AAGTACCTATACTATGGCCCATTGCCAAATCAAGGTAACTCCTCTCTGA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT--TATCCCA
32007291 AA-TACCTATACCATGGCCCGTAGCCAAAT
1 AAGTACCTATACCATGGCCCGTAGCCAAAT
32007320 AAAAGAATCA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
46 21 0.33
47 13 0.20
48 24 0.38
49 6 0.09
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCA
Found at i:32018453 original size:20 final size:20
Alignment explanation
Indices: 32018428--32018469 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
32018418 AGTAAACAAA
*
32018428 TTACGGTTGGTTGAAATGTT
1 TTACGGTTGGTCGAAATGTT
32018448 TTACGGTTGGTCGAAATGTT
1 TTACGGTTGGTCGAAATGTT
32018468 TT
1 TT
32018470 GGTAATGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.07, G:0.29, T:0.45
Consensus pattern (20 bp):
TTACGGTTGGTCGAAATGTT
Found at i:32022746 original size:18 final size:18
Alignment explanation
Indices: 32022707--32022748 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
32022697 TGCACTCATT
*
32022707 TTTTCTTCACTCTTTTTG
1 TTTTCTTCACTCTTTTTC
*
32022725 TTTTCTTGA-TCTTTATTC
1 TTTTCTTCACTCTTT-TTC
32022743 TTTTCT
1 TTTTCT
32022749 CTCATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.07, C:0.19, G:0.05, T:0.69
Consensus pattern (18 bp):
TTTTCTTCACTCTTTTTC
Found at i:32025283 original size:43 final size:43
Alignment explanation
Indices: 32025179--32025287 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
32025169 GACTTATGAT
* *
32025179 TTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTGAC
1 TTACATGTAAGACCATGTTTGGGACATAGACATCGTATTTGAC
** * * *
32025222 TT-TGTGTAAAACCCTGTTTGGGACAATAG-CATCGATATTTG-G
1 TTACATGTAAGACCATGTTTGGGAC-ATAGACATCG-TATTTGAC
32025264 TTACATGTAAGACCATGTTTGGGA
1 TTACATGTAAGACCATGTTTGGGA
32025288 TGTTGGCATT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
42 24 0.46
43 28 0.54
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTTTGGGACATAGACATCGTATTTGAC
Found at i:32031537 original size:29 final size:29
Alignment explanation
Indices: 32031505--32031569 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
32031495 GGCCGAACGA
*
32031505 GCCATATAGATGTGATTTGGGCCTAATGG
1 GCCATATAGAGGTGATTTGGGCCTAATGG
** *
32031534 GCCATATCTAGGTGATTTGGGCCTAGTGG
1 GCCATATAGAGGTGATTTGGGCCTAATGG
32031563 GCCATAT
1 GCCATAT
32031570 GAATACGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.31
Consensus pattern (29 bp):
GCCATATAGAGGTGATTTGGGCCTAATGG
Found at i:32031579 original size:29 final size:29
Alignment explanation
Indices: 32031518--32031589 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
32031508 ATATAGATGT
* **
32031518 GATTTGGGCCTAATGGGCCATATCTAGGT
1 GATTTGGGCCTAATGGGCCATATCAAGAC
* * *
32031547 GATTTGGGCCTAGTGGGCCATATGAATAC
1 GATTTGGGCCTAATGGGCCATATCAAGAC
*
32031576 GA-TTGGGCTTAATG
1 GATTTGGGCCTAATG
32031590 AGCTAGATAC
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 10 0.29
29 25 0.71
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (29 bp):
GATTTGGGCCTAATGGGCCATATCAAGAC
Found at i:32035714 original size:43 final size:43
Alignment explanation
Indices: 32035619--32035728 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
32035609 GACTTATGAT
* *
32035619 TTACATGTAAGACCATGTATGGGACATCGGAATCATATTTGAC
1 TTACATGTAAGACCCTGTCTGGGACATCGGAATCATATTTGAC
* * *
32035662 TT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCAATATTTG-G
1 TTACATGTAAGACCCTGTCTGGGACA-TCGGAATC-ATATTTGAC
32035704 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
32035729 CTTGCATTGT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
42 27 0.47
43 29 0.51
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGACATCGGAATCATATTTGAC
Found at i:32041731 original size:47 final size:46
Alignment explanation
Indices: 32041576--32041892 Score: 238
Period size: 47 Copynumber: 6.8 Consensus size: 46
32041566 TGGGATATAT
* * * **
32041576 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATACGCA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTG-A
* * * * *
32041626 TGCTGATGCATGTCCCAAACATGTCTTACACTAGCACAACTCT-T-A
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTGA
* * *
32041671 -GCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTCTGTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT-GA
*
32041717 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTG-
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTGA
* **
32041765 T--CGATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GA
1 TGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTATC-TCTGTGA
* * * *
32041810 TGCCGATGCAATGTCCTAGGCATGGTCTTACACTGG--ATCTCATAATGT
1 TGCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTATCTC-T-GTGA
*
32041858 TGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGC
32041893 GCACAAATCA
Statistics
Matches: 215, Mismatches: 33, Indels: 41
0.74 0.11 0.14
Matches are distributed among these distances:
43 5 0.02
44 32 0.15
45 9 0.04
46 22 0.10
47 82 0.38
48 33 0.15
49 17 0.08
50 15 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTGA
Found at i:32041824 original size:94 final size:91
Alignment explanation
Indices: 32041576--32041892 Score: 293
Period size: 94 Copynumber: 3.4 Consensus size: 91
32041566 TGGGATATAT
* * * *
32041576 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATACGCATGCTGATGCATGTCC
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-TCT--GGATGCCGATGCATGTCC
* * *
32041641 CAAACATGTCTTACACTAGCA--CAACTCT-
61 CAGACATGTCTTACACTGGCACTCATCTCTG
* * * * *
32041669 TAGCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCGATGCATGTCCCA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTG--GATGCCGATGCATGTCCCA
32041734 GACATGTCTTACACTGGCACTCATCTCTG
63 GACATGTCTTACACTGGCACTCATCTCTG
* * * *
32041763 TGTCGATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGCCGATGCAATGTCCTA
1 TGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTCTC-TCTGGATGCCGATGC-ATGTCCCA
* **
32041828 GGCATGGTCTTACACTGG-ATCTCAT-AATG
63 GACAT-GTCTTACACTGGCA-CTCATCTCTG
*
32041857 TTGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTGGC
32041893 GCACAAATCA
Statistics
Matches: 185, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
89 1 0.01
91 35 0.19
92 15 0.08
93 34 0.18
94 73 0.39
95 27 0.15
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (91 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTGGATGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCACTCATCTCTG
Found at i:32041879 original size:141 final size:137
Alignment explanation
Indices: 32041575--32041892 Score: 342
Period size: 141 Copynumber: 2.3 Consensus size: 137
32041565 ATGGGATATA
* *
32041575 TTGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATACGCATGCTGATGCATGTC
1 TTGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATACG-ATGCTGATGCATGTC
* *
32041640 CCAAACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCTAGACACGTCTTACACTGGC
63 CCAAACATGTCTTACACTAGCACAACTCTGAGCCGATGCATGTCCTAGACACGTCTTACACTGGC
*
32041705 TATCTCTGTCG
128 -ATCTCTATCG
** *
32041716 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCT-CTG-TG-TCGATGCCATGTC
1 TTGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATAC-GATGCT-GATG-CATGTC
* ** * *
32041778 CCAGACATGTCTTACACTAGC-CCTCGTCTGGATGCCGATGCAATGTCCTAGGCATGGTCTTACA
63 CCAAACATGTCTTACACTAGCACAAC-TCT-GA-GCCGATGC-ATGTCCTAGACA-CGTCTTACA
32041842 CTGG-ATCTCATAAT-G
123 CTGGCATCTC-T-ATCG
*
32041857 TTGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 TTGCCGATGCATGTCCCAGACATGTCTTACACTGGC
32041893 GCACAAATCA
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
136 1 0.01
137 8 0.05
138 30 0.20
139 20 0.13
140 27 0.18
141 52 0.34
142 13 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (137 bp):
TTGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATACGATGCTGATGCATGTCCCA
AACATGTCTTACACTAGCACAACTCTGAGCCGATGCATGTCCTAGACACGTCTTACACTGGCATC
TCTATCG
Found at i:32049140 original size:51 final size:51
Alignment explanation
Indices: 32049056--32049195 Score: 158
Period size: 51 Copynumber: 2.7 Consensus size: 51
32049046 CGGATACCCG
*
32049056 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTACC-TCTTACACAAA
* * * * *
32049107 GTGGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
* * * *
32049158 GTGGCCTGCACTTAGTATCACACATGTGATCGAAGCTA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTA
32049196 TCAGGTACAC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
50 4 0.05
51 69 0.93
52 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
Found at i:32054007 original size:794 final size:794
Alignment explanation
Indices: 32052434--32054021 Score: 2944
Period size: 794 Copynumber: 2.0 Consensus size: 794
32052424 AATTCCAATA
32052434 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
1 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
32052499 ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
66 ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
32052564 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
131 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
32052629 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGACTAAATCGC
196 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGACTAAATCGC
32052694 GTAAAGTTCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGG
261 GTAAAGTTCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGG
*
32052759 GTCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGTAGGCCATAGGAGACATAATATGGAGA
326 GTCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGCAGGCCATAGGAGACATAATATGGAGA
* * * *
32052824 AAGTCAAAATAAGGTAGAAGTTTGGTAGCTTATTTGACCAAAATGGAATAAAATAAAGAAAAAGG
391 AAGTCAAAATAAGGTAAAAGTTTGGTAGCTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAG
* * * *
32052889 GGTGTCATCTTTTTCTCACCTTCTTGACCACCAAAATTTACTAGAAAAAATAGGGTTTAGAAGCT
456 GGTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGAAAAAATAGGGTTTAAAAGAT
32052954 TGAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTT
521 TGAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTT
32053019 TTGTATTTTTGGACCTCTTGTAGCATGAGCTTTCAAAAGAGGTTTTGCAAAATGGTTGAAAGTTT
586 TTGTATTTTTGGACCTCTTGTAGCATGAGCTTTCAAAAGAGGTTTTGCAAAATGGTTGAAAGTTT
32053084 AGGATCTTTCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTATTGT
651 AGGATCTTTCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTATTGT
* *
32053149 TGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTAGGACCGTTTTGCATAA
716 TGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTAGGACCATTCTGCATAA
32053214 GTTAAGAATTAGAT
781 GTTAAGAATTAGAT
32053228 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
1 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
*
32053293 ATATAGCATAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
66 ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
32053358 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
131 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
32053423 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGACTAAATCGC
196 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGACTAAATCGC
32053488 GTAAAGTTCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGG
261 GTAAAGTTCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGG
* * * *
32053553 GTCTTTAAAGGGAAAATAGATCCTTGGATAGGTGATGGCCGGCCATAGGATACGTAATATGGAGA
326 GTCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGCAGGCCATAGGAGACATAATATGGAGA
* *
32053618 AAGTTAAAATTAGGTAAAAGTTTGGTA-CTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAG
391 AAGTCAAAATAAGGTAAAAGTTTGGTAGCTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAG
* *
32053682 GGTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGCAAAAATAGGTTTTAAAAGAT
456 GGTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGAAAAAATAGGGTTTAAAAGAT
*
32053747 TGAAAAATTTCAGCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTT
521 TGAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTT
32053812 TTGTATTTTTGGACCTCTTGTAGCATGAGCTTTCAAAAGAGGTTTTGCAAAATGGTTGAAAGTTT
586 TTGTATTTTTGGACCTCTTGTAGCATGAGCTTTCAAAAGAGGTTTTGCAAAATGGTTGAAAGTTT
32053877 AGGATCTTTCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTATTGT
651 AGGATCTTTCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTATTGT
* * *
32053942 TGTGAAATAAACAAGTTTTGTGAAGTAGTTTTCATTGAAACGCTAACTAGGGACCATTCTGCATA
716 TGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTA-GGACCATTCTGCATA
32054007 AGTTAAGAATTAGAT
780 AGTTAAGAATTAGAT
32054022 GATAAATGTG
Statistics
Matches: 769, Mismatches: 24, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
793 333 0.43
794 436 0.57
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (794 bp):
TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGACTAAATCGC
GTAAAGTTCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGG
GTCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGCAGGCCATAGGAGACATAATATGGAGA
AAGTCAAAATAAGGTAAAAGTTTGGTAGCTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAG
GGTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGAAAAAATAGGGTTTAAAAGAT
TGAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTT
TTGTATTTTTGGACCTCTTGTAGCATGAGCTTTCAAAAGAGGTTTTGCAAAATGGTTGAAAGTTT
AGGATCTTTCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTATTGT
TGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTAGGACCATTCTGCATAA
GTTAAGAATTAGAT
Found at i:32054721 original size:48 final size:46
Alignment explanation
Indices: 32054513--32054723 Score: 182
Period size: 46 Copynumber: 4.6 Consensus size: 46
32054503 TGATATATGT
* * * *
32054513 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGATGAAA
* * *
32054559 GCCAGTGTAAGACATG--T--GACATGCATCAACCTCGAGAT-ATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGA---AA
* * * * *
32054603 GCCAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGAAA
* *
32054649 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATGGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGAT-GA-AA
* *
32054697 GCTAGTGTAAGACTTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
32054724 GCGTCACCTT
Statistics
Matches: 132, Mismatches: 22, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
41 2 0.02
42 14 0.11
44 17 0.13
46 53 0.40
47 2 0.02
48 43 0.33
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGAAA
Found at i:32061082 original size:52 final size:52
Alignment explanation
Indices: 32061020--32061124 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
32061010 TACTAGAAAA
*
32061020 AATAGGGTTTAGAAGCCTGAAAAATTTCAGCCACTCTTTACCTTCACAAGTC
1 AATAGGGTTTAGAAGCCTGAAAAATTTCACCCACTCTTTACCTTCACAAGTC
32061072 AATAGGGTTTAGAAGCCTGAAAAATTTCACCCACTCTTTACCTTCACAAGTC
1 AATAGGGTTTAGAAGCCTGAAAAATTTCACCCACTCTTTACCTTCACAAGTC
32061124 A
1 A
32061125 GTGATTTTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (52 bp):
AATAGGGTTTAGAAGCCTGAAAAATTTCACCCACTCTTTACCTTCACAAGTC
Found at i:32061914 original size:46 final size:47
Alignment explanation
Indices: 32061860--32061979 Score: 163
Period size: 48 Copynumber: 2.6 Consensus size: 47
32061850 TGTATGCTAC
*
32061860 TGTAAGACATGTTTGGGACATGCATCGG-CCAAAATA-TGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGACCAAAATATTGA-AGCCAA
* * * *
32061906 TGTAAGACATGTCTGGGACATGCATCGGTATCGAGATATTTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-ACCAAAATATTGAAGCCAA
32061954 TGTAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
32061980 AGCGTTGAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 27 0.41
48 37 0.56
49 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGACCAAAATATTGAAGCCAA
Found at i:32061963 original size:48 final size:46
Alignment explanation
Indices: 32061860--32062025 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
32061850 TGTATGCTAC
* * * *
32061860 TGTAAGACATGTTTGGGACATGCATCGG-CCAAAATATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGTTCGAGATAT-AGAGCCAA
32061906 TGTAAGACATGTCTGGGACATGCATCGGTATCGAGATATTTA-AGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGT-TCGAGATA--TAGAGCCAA
* * *
32061954 TGTAAGACATGTCTGGGACATGCATCAGCGTT-GAGACA-AGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATC-G-GTTCGAGATATAGAGCCAA
32062000 TGTAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
32062026 AGCCTCGCAA
Statistics
Matches: 106, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
45 1 0.01
46 57 0.54
48 42 0.40
49 3 0.03
50 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGTTCGAGATATAGAGCCAA
Found at i:32065538 original size:13 final size:13
Alignment explanation
Indices: 32065520--32065546 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32065510 TTCAGATCAC
32065520 ATAGTTCCTAGTG
1 ATAGTTCCTAGTG
32065533 ATAGTTCCTAGTG
1 ATAGTTCCTAGTG
32065546 A
1 A
32065547 CATGTCACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (13 bp):
ATAGTTCCTAGTG
Found at i:32079155 original size:40 final size:40
Alignment explanation
Indices: 32079098--32079177 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
32079088 GTGTGTGTGC
32079098 TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
1 TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
*
32079138 TGGCCATGATCCTTTTTAATGGTATCTTTGTTGTGGTTTT
1 TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
32079178 AGTAGATATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.12, C:0.14, G:0.23, T:0.51
Consensus pattern (40 bp):
TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
Found at i:32079278 original size:20 final size:21
Alignment explanation
Indices: 32079242--32079285 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
32079232 TAGGTTTGGT
32079242 AAAAACAAATAGTTTTTAAGG
1 AAAAACAAATAGTTTTTAAGG
32079263 AAAAACAAATAGTTTTTAAGG
1 AAAAACAAATAGTTTTTAAGG
32079284 AA
1 AA
32079286 TGAATGGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (21 bp):
AAAAACAAATAGTTTTTAAGG
Found at i:32080633 original size:14 final size:14
Alignment explanation
Indices: 32080614--32080642 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32080604 GGGGGTTGAG
32080614 GTTTTCCAAAGTCA
1 GTTTTCCAAAGTCA
32080628 GTTTTCCAAAGTCA
1 GTTTTCCAAAGTCA
32080642 G
1 G
32080643 ACTTCTGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (14 bp):
GTTTTCCAAAGTCA
Found at i:32085918 original size:47 final size:47
Alignment explanation
Indices: 32085864--32086272 Score: 665
Period size: 47 Copynumber: 8.6 Consensus size: 47
32085854 TATTTGAATA
* *
32085864 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
32085911 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
32085958 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
32086007 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
32086054 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
32086103 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
32086150 AATGTGAAAGTGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
32086199 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
32086246 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32086273 TCTCGAAGGG
Statistics
Matches: 340, Mismatches: 16, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
47 203 0.60
49 137 0.40
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:32085993 original size:96 final size:96
Alignment explanation
Indices: 32085864--32086272 Score: 727
Period size: 96 Copynumber: 4.3 Consensus size: 96
32085854 TATTTGAATA
32085864 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
32085927 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
32085958 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
32086023 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
32086054 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
32086119 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
32086150 AATGTGAAAGTGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
32086215 TATGTGATAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
32086246 GATGTGAAA--GTGTATAAATGTGATAAG
1 AATGTGAAAGTGTGTATATATGTGATAAG
32086273 TCTCGAAGGG
Statistics
Matches: 306, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
94 26 0.08
96 280 0.92
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:32086148 original size:22 final size:22
Alignment explanation
Indices: 32086120--32086197 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
32086110 AAGTGTATAT
32086120 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
32086142 ATGTGATGAATG-TGAAAGTGTGTATA
1 ATGTGAT-AAGGCCG-AA-TG-G-CCA
32086168 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
32086191 ATGTGAT
1 ATGTGAT
32086198 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 15 0.37
23 6 0.15
24 3 0.07
25 3 0.07
26 6 0.15
27 8 0.20
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:32086786 original size:238 final size:238
Alignment explanation
Indices: 32086368--32086842 Score: 932
Period size: 238 Copynumber: 2.0 Consensus size: 238
32086358 GTAGGCTTCG
32086368 TGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTAGAGATTTTGTCCAGGTAAGC
1 TGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTAGAGATTTTGTCCAGGTAAGC
32086433 TCCGAACTAAAGGTTTTGCTAAAGATTCAAGTAAAGCGTAAGATTATACGACTTCACAGTAACAA
66 TCCGAACTAAAGGTTTTGCTAAAGATTCAAGTAAAGCGTAAGATTATACGACTTCACAGTAACAA
32086498 TTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAGGTATGTATTTTGAGATTATATTTAAGTT
131 TTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAGGTATGTATTTTGAGATTATATTTAAGTT
* *
32086563 TGATTTAGACTAAATCACAAGGTCGTTATGTGATGCACATGTA
196 TGATTTAGACTAAATCACAAAGTCCTTATGTGATGCACATGTA
32086606 TGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTAGAGATTTTGTCCAGGTAAGC
1 TGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTAGAGATTTTGTCCAGGTAAGC
32086671 TCCGAACTAAAGGTTTTGCTAAAGATTCAAGTAAAGCGTAAGATTATACGACTTCACAGTAACAA
66 TCCGAACTAAAGGTTTTGCTAAAGATTCAAGTAAAGCGTAAGATTATACGACTTCACAGTAACAA
32086736 TTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAGGTATGTATTTTGAGATTATATTTAAGTT
131 TTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAGGTATGTATTTTGAGATTATATTTAAGTT
32086801 TGATTTAGACTAAATCACAAAGTCCTTATGTGATGCACATGT
196 TGATTTAGACTAAATCACAAAGTCCTTATGTGATGCACATGT
32086843 GAGTAAAGCA
Statistics
Matches: 235, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
238 235 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (238 bp):
TGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTAGAGATTTTGTCCAGGTAAGC
TCCGAACTAAAGGTTTTGCTAAAGATTCAAGTAAAGCGTAAGATTATACGACTTCACAGTAACAA
TTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAGGTATGTATTTTGAGATTATATTTAAGTT
TGATTTAGACTAAATCACAAAGTCCTTATGTGATGCACATGTA
Found at i:32087969 original size:40 final size:39
Alignment explanation
Indices: 32087925--32088116 Score: 240
Period size: 40 Copynumber: 4.8 Consensus size: 39
32087915 GAGAATTGAG
32087925 AGTGATGTATCCGGGCTAAGTCCAGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCC-GAAGAGCATTCGTGCT
32087965 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTC-CGAAGAGCATTCGTGCT
* *
32088005 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCT
* * * **
32088045 AATGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCT-AAGTCCGAAGAGCATTCGTGCT
* * * *
32088085 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCA
32088117 ATCAATCTGG
Statistics
Matches: 132, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 127 0.96
41 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
Found at i:32091722 original size:47 final size:47
Alignment explanation
Indices: 32091644--32091973 Score: 552
Period size: 47 Copynumber: 7.0 Consensus size: 47
32091634 NNNNNNNNNN
* *
32091644 GGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
32091691 GGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
32091738 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
32091785 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
32091832 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
32091879 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * *
32091926 GGCCGAGTGGCCAACGTGGTGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
32091973 G
1 G
32091974 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 268 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:32092148 original size:37 final size:37
Alignment explanation
Indices: 32092092--32092170 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
32092082 CCGAGCTCTA
* * *
32092092 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
32092129 AAGATCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32092166 AAGAC
1 AAGAC
32092171 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32096894 original size:29 final size:29
Alignment explanation
Indices: 32096862--32096944 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
32096852 TTTCAGCCTA
32096862 ATGGGCCATATGAATATGAATTGGGCATG
1 ATGGGCCATATGAATATGAATTGGGCATG
* *
32096891 ATGGGCCATATGAATGTGAATTGGGCCTG
1 ATGGGCCATATGAATATGAATTGGGCATG
32096920 ATGGGCCATAT-AA-ATGAGATTGGGC
1 ATGGGCCATATGAATATGA-ATTGGGC
32096945 CAAGTGGGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
27 3 0.06
28 9 0.18
29 38 0.76
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.27
Consensus pattern (29 bp):
ATGGGCCATATGAATATGAATTGGGCATG
Found at i:32096952 original size:28 final size:29
Alignment explanation
Indices: 32096862--32096956 Score: 108
Period size: 29 Copynumber: 3.3 Consensus size: 29
32096852 TTTCAGCCTA
32096862 ATGGGCCATATGAATATGA-ATTGGG-CATG
1 ATGGGCCATAT-AA-ATGAGATTGGGCCATG
* *
32096891 ATGGGCCATATGAATGTGAATTGGGCC-TG
1 ATGGGCCATATAAATGAG-ATTGGGCCATG
*
32096920 ATGGGCCATATAAATGAGATTGGGCCAAG
1 ATGGGCCATATAAATGAGATTGGGCCATG
32096949 -TGGGCCAT
1 ATGGGCCAT
32096957 TTGCATGTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
27 3 0.05
28 17 0.30
29 36 0.63
30 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (29 bp):
ATGGGCCATATAAATGAGATTGGGCCATG
Found at i:32104185 original size:29 final size:29
Alignment explanation
Indices: 32104150--32104289 Score: 131
Period size: 29 Copynumber: 4.9 Consensus size: 29
32104140 TGAATATAAG
* * *
32104150 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* ** * *
32104179 GTGATTTCAGTCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * * *
32104208 ATGAATTGGGCGTGATGGGCCATATTAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
32104237 GTGAATTGGGCCTGATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
32104266 GAG-ATTGGGCC-AATTGGGCCATAT
1 GTGAATTGGGCCTAA-TGGGCCATAT
32104290 GCATGTATGT
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
27 1 0.01
28 18 0.20
29 72 0.79
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATAAAT
Found at i:32106799 original size:18 final size:18
Alignment explanation
Indices: 32106776--32106811 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32106766 GAGATGGTTG
32106776 GAGTTGATAAAAGACTAT
1 GAGTTGATAAAAGACTAT
*
32106794 GAGTTGATAATAGACTAT
1 GAGTTGATAAAAGACTAT
32106812 CACCCAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (18 bp):
GAGTTGATAAAAGACTAT
Found at i:32109863 original size:49 final size:49
Alignment explanation
Indices: 32109809--32109938 Score: 154
Period size: 49 Copynumber: 2.6 Consensus size: 49
32109799 TGTAATATGT
* * *
32109809 CAGTGTAAGACTTGTTTGGGACATGACATCGACACCGA-TAGATGAGAGC
1 CAGTGTAAGACATGTTTGGGACATGGCATCGAC-CCGACTAGATGAAAGC
* * ** *
32109858 CAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTTACTATATGAAAGC
1 CAGTGTAAGACATGTTTGGGACATGGCATCGACCCGACTAGATGAAAGC
*
32109907 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGA-CATGTTTGGGACATGGCATCG
32109939 GCATCTTAAC
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
48 2 0.03
49 49 0.70
50 19 0.27
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACATGTTTGGGACATGGCATCGACCCGACTAGATGAAAGC
Found at i:32111217 original size:39 final size:39
Alignment explanation
Indices: 32111162--32111346 Score: 271
Period size: 39 Copynumber: 4.7 Consensus size: 39
32111152 TTCCAACCCA
* * * *
32111162 AATGCCTTCGGAACTTATCCCGGATATAACATCAGCATG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
*
32111201 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* * * * *
32111240 AATGCATTTGAGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
32111279 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
*
32111318 AATGCCTTCGAGACTTAACCCGGATATAA
1 AATGCCTTCGGGACTTAACCCGGATATAA
32111347 ATCTCACACA
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 132 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
Found at i:32120726 original size:47 final size:47
Alignment explanation
Indices: 32120502--32121051 Score: 731
Period size: 47 Copynumber: 11.4 Consensus size: 47
32120492 CAGCCAAGAG
32120502 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32120549 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32120598 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
32120649 AGTGTATGTATATATGTAATAAGGTCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
32120700 AGTGTATATGTGTGATGAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32120747 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
32120794 AGGGTATATGTGTGATGAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32120841 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32120888 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32120935 AGTGTATATATGTGATAAGGCCTACCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGG----CCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
32120986 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32121033 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
32121052 TCCCGAAAGG
Statistics
Matches: 453, Mismatches: 40, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
47 272 0.60
49 43 0.09
51 134 0.30
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32121226 original size:37 final size:37
Alignment explanation
Indices: 32121170--32121248 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
32121160 CTGAGCTCTA
* * * *
32121170 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGG
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGG
* *
32121207 AAGACCCAATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGG
32121244 AAGAC
1 AAGAC
32121249 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGG
Found at i:32123825 original size:39 final size:39
Alignment explanation
Indices: 32123770--32123993 Score: 304
Period size: 39 Copynumber: 5.7 Consensus size: 39
32123760 TTCCAACCCA
* * * *
32123770 AATGCCTTCGGAACTTAGCCAGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* * *
32123809 AATGCCTTTGGGACTTAGCCCGGATATAATATTAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* * *
32123848 AATGCCTTCGAGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* *
32123887 AATGCCTTTGGGACTTAACCCGGATATAATATCAGTACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* ***
32123926 AATGCCTTTGGGACTTAACTTTGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
32123965 AATGCCTTCGGGACTTAACCCGGATATAA
1 AATGCCTTCGGGACTTAACCCGGATATAA
32123994 ATCTCACACA
Statistics
Matches: 163, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 163 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
Found at i:32125926 original size:15 final size:15
Alignment explanation
Indices: 32125906--32125939 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
32125896 CAGATCAAAG
32125906 CATGAAACTTTCACA
1 CATGAAACTTTCACA
32125921 CATGAAACTTTCACA
1 CATGAAACTTTCACA
32125936 CATG
1 CATG
32125940 CATTTACACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.26
Consensus pattern (15 bp):
CATGAAACTTTCACA
Found at i:32133175 original size:49 final size:49
Alignment explanation
Indices: 32133102--32133199 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
32133092 GGGATTACTG
32133102 CAACCTGTGAAAATTCCGCAATGGAAGTGGGAAAGAGCAACAATGGAAT
1 CAACCTGTGAAAATTCCGCAATGGAAGTGGGAAAGAGCAACAATGGAAT
* *
32133151 CAACCTGTGAAAATTCCGCTATGGAAGTGGGAAAGAGTAACAATGGAAT
1 CAACCTGTGAAAATTCCGCAATGGAAGTGGGAAAGAGCAACAATGGAAT
32133200 TTGTGAGTGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (49 bp):
CAACCTGTGAAAATTCCGCAATGGAAGTGGGAAAGAGCAACAATGGAAT
Found at i:32135655 original size:40 final size:39
Alignment explanation
Indices: 32135566--32135716 Score: 178
Period size: 40 Copynumber: 3.8 Consensus size: 39
32135556 TGGATGAAAA
* * ** * *
32135566 CCGGGCTAAGTCTCGAAGGCATCTGCACTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
32135605 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
32135645 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
* *
32135685 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
32135717 AGTTATATCC
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 29 0.30
40 64 0.66
41 2 0.02
42 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:32144207 original size:13 final size:13
Alignment explanation
Indices: 32144189--32144234 Score: 85
Period size: 13 Copynumber: 3.6 Consensus size: 13
32144179 CTTAGCACAT
32144189 GCCCGTGTCTATA
1 GCCCGTGTCTATA
32144202 GCCCGTGTCTATA
1 GCCCGTGTCTATA
32144215 GCCCGTGTCTAT-
1 GCCCGTGTCTATA
32144227 GCCCGTGT
1 GCCCGTGT
32144235 ATAAAAACCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 8 0.24
13 25 0.76
ACGTcount: A:0.11, C:0.33, G:0.26, T:0.30
Consensus pattern (13 bp):
GCCCGTGTCTATA
Found at i:32150875 original size:48 final size:48
Alignment explanation
Indices: 32150804--32151076 Score: 314
Period size: 48 Copynumber: 5.6 Consensus size: 48
32150794 AGGGTAAGAT
* * * * *
32150804 GCCGATGTCATGCTCCAAG-CATGGCCTTACAGTAGCCCACATATCGAG
1 GCCGATGCCATG-TCCCAGACATGGTCTTACACTAGCCCACATATCAAG
*
32150852 GCCGATGCAATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
* *
32150900 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCCCAAATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
* * * * *
32150948 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATAAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
* * * * * * * * *
32150996 ACCGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATACCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-C-CACATATCAAG
32151046 GCCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
32151077 ATGGCTCACA
Statistics
Matches: 192, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 5 0.03
48 154 0.80
50 33 0.17
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
Found at i:32161777 original size:48 final size:48
Alignment explanation
Indices: 32161716--32161995 Score: 280
Period size: 48 Copynumber: 5.8 Consensus size: 48
32161706 TCAATGCCAT
* *
32161716 TGCCATGTTCCAAACATGGTCTTATACTAGCCCACATATCGAGGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCTGA
**
32161764 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCCAA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCTGA
* *
32161812 TGCCATGTCCCAAACATGGTCTTACACTAGCCTACATATCAAGG-TCGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCT-GA
* * * * ***
32161860 TGCCATGTCCCAGACATGGTCTTACAC-AGGCTCTCATAT-AAATATCGA
1 TGCCATGTCCCAAACATGGTCTTACACTA-GCCCACATATCGAGGCT-GA
* * * * *
32161908 TGCCATGTTCCAAACATGGTCTGACACTGGCTCTCATATATTG-GTGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGC-C-CACATATCGAG-GCTGA
* * * *
32161958 TGTCATGTCCCAAACATAGTCTTACACTGGCTCACATA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATA
32161996 ACCCTAGTAT
Statistics
Matches: 193, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
47 3 0.02
48 155 0.80
50 34 0.18
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (48 bp):
TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCTGA
Found at i:32161842 original size:96 final size:96
Alignment explanation
Indices: 32161661--32161995 Score: 334
Period size: 96 Copynumber: 3.4 Consensus size: 96
32161651 AGGGTAAGAT
* ** * * * *
32161661 GCTGATGTCATGTTTCAAACATGGCCTTACACTGGCTCTCATATATCAATGCCATTGCCATGTTC
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGC-C-CACATATCAATGCCAATGCCATGTTC
*
32161726 CAAACATGGTCTTATACTAGCCCACATATCGAG
64 CAAACATGGTCTTACACTAGCCCACATATCGAG
* * *
32161759 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCCAATGCCATGTCCCA
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAATGCCAATGCCATGTTCCA
* *
32161824 AACATGGTCTTACACTAGCCTACATATCAAG
66 AACATGGTCTTACACTAGCCCACATATCGAG
* * * * ** *
32161855 G-TCGATGCCATGTCCCAGACATGGTCTTACAC-AGGCTCTCATATAAATATCGATGCCATGTTC
1 GCT-GATGCCATGTCCCAAACATGGTCTTACACTA-GCCCACATATCAATGCCAATGCCATGTTC
* * * *
32161918 CAAACATGGTCTGACACTGGCTCTCATATATTG-G
64 CAAACATGGTCTTACACTAGC-C-CACATATCGAG
* * * *
32161952 TGCTGATGTCATGTCCCAAACATAGTCTTACACTGGCTCACATA
1 -GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATA
32161996 ACCCTAGTAT
Statistics
Matches: 196, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
95 2 0.01
96 119 0.61
97 3 0.02
98 71 0.36
99 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (96 bp):
GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAATGCCAATGCCATGTTCCA
AACATGGTCTTACACTAGCCCACATATCGAG
Found at i:32176316 original size:23 final size:22
Alignment explanation
Indices: 32176290--32176338 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
32176280 TAAATTTCAC
32176290 CCCCAGACAAAATGACCATTTTG
1 CCCC-GACAAAATGACCATTTTG
* *
32176313 CCCCGAGAAAATGACCGTTTTG
1 CCCCGACAAAATGACCATTTTG
32176335 CCCC
1 CCCC
32176339 TAACCTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCCGACAAAATGACCATTTTG
Found at i:32179096 original size:19 final size:19
Alignment explanation
Indices: 32179072--32179115 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
32179062 GAGTTTCAAC
32179072 AATAATCATAGCAAATTTT
1 AATAATCATAGCAAATTTT
32179091 AATAATCATAGCAAATTTT
1 AATAATCATAGCAAATTTT
32179110 AATAAT
1 AATAAT
32179116 GATTCTTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (19 bp):
AATAATCATAGCAAATTTT
Found at i:32180394 original size:38 final size:38
Alignment explanation
Indices: 32180338--32180519 Score: 159
Period size: 38 Copynumber: 4.8 Consensus size: 38
32180328 AGAAACGTAA
** * **
32180338 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTCGTGCTGG
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
* * * * **
32180376 TATTATTCAAGCTCTGTGCCTAGTAGGCTTTGTACTGG
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
* * * ** *
32180414 TGTCATTCAGGCTCTATGCCTAGTTGGCTTTGTGCCAG
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
*
32180452 TGTTATTC-AGACTCTGTGCCTAGCAGGCTTCATGCCAG
1 TGTTATTCAAG-CTCTGTGCCTAGCAGGCTTCGTGCCAG
* * *
32180490 TGTTTTTCAGGCTCTGTGTCTAGCAGGCTT
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTT
32180520 TGTACCAATA
Statistics
Matches: 117, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 115 0.98
39 1 0.01
ACGTcount: A:0.14, C:0.22, G:0.27, T:0.37
Consensus pattern (38 bp):
TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
Found at i:32180541 original size:114 final size:114
Alignment explanation
Indices: 32180338--32180595 Score: 266
Period size: 114 Copynumber: 2.3 Consensus size: 114
32180328 AGAAACGTAA
* * * ** *
32180338 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTCGTGCTGGTATTATTCAAGCTCTGTGCCTAGTAGG
1 TGTTATTCGGACTCTGTGCCTAGCAGGCTTCATGCCAGTATTATTCAAGCTCTGTGCCTAGCAGG
*** * ****
32180403 CTTTGTACTGGTGTCATTCAGGCTCTATGCCTAGTTGGCTTTGTGCCAG
66 CTTTGTACCAATCTCATTCAGGCTCTATGCCTAGCAAACTTTGTGCCAG
* * * * *
32180452 TGTTATTCAGACTCTGTGCCTAGCAGGCTTCATGCCAGTGTTTTTCAGGCTCTGTGTCTAGCAGG
1 TGTTATTCGGACTCTGTGCCTAGCAGGCTTCATGCCAGTATTATTCAAGCTCTGTGCCTAGCAGG
* * * **
32180517 CTTTGTACCAATACT-ATTCGGGCTCTGTGTCTAGCAAACTTTGTGTTAG
66 CTTTGTACCAAT-CTCATTCAGGCTCTATGCCTAGCAAACTTTGTGCCAG
* *
32180566 TGTTATTTGGATTCTGTGCCTAGCAGGCTT
1 TGTTATTCGGACTCTGTGCCTAGCAGGCTT
32180596 TGTGCCTAGT
Statistics
Matches: 116, Mismatches: 27, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
114 115 0.99
115 1 0.01
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.38
Consensus pattern (114 bp):
TGTTATTCGGACTCTGTGCCTAGCAGGCTTCATGCCAGTATTATTCAAGCTCTGTGCCTAGCAGG
CTTTGTACCAATCTCATTCAGGCTCTATGCCTAGCAAACTTTGTGCCAG
Found at i:32186776 original size:38 final size:38
Alignment explanation
Indices: 32186676--32186863 Score: 146
Period size: 38 Copynumber: 4.9 Consensus size: 38
32186666 AGAAGCATAA
* * *
32186676 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTCGTGCCGG
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
* * * * *
32186714 TGTTATT-TGAACT-TTATGCTTAGCAGGCTTCGTGCTGG
1 TGTTATTCAG-GCTCTGA-GCCTAGCAGGCTTCGTGCCGG
* * *
32186752 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTTGTACTGG
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
* * * *
32186790 TGTTATTCAGGCTCTGTGCCTAGTAGGTTTTGTGCCGG
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
* * * * * * *
32186828 AGTTATTCAAGTTTTGTGCCTAGCAAGCTTTGTGCC
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCC
32186864 TAACAAGCTT
Statistics
Matches: 122, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
37 2 0.02
38 117 0.96
39 3 0.02
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.38
Consensus pattern (38 bp):
TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
Found at i:32186859 original size:16 final size:16
Alignment explanation
Indices: 32186835--32186873 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
32186825 CGGAGTTATT
* *
32186835 CAAGTTTTGTGCCTAG
1 CAAGCTTTGTGCCTAA
32186851 CAAGCTTTGTGCCTAA
1 CAAGCTTTGTGCCTAA
32186867 CAAGCTT
1 CAAGCTT
32186874 CGTGTCGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (16 bp):
CAAGCTTTGTGCCTAA
Found at i:32186896 original size:38 final size:38
Alignment explanation
Indices: 32186854--32186938 Score: 118
Period size: 38 Copynumber: 2.2 Consensus size: 38
32186844 TGCCTAGCAA
*
32186854 GCTTTGTGCCTAACAAG-CTTCGTGTCGGTGTTATTCGG
1 GCTTTGTGCCTAAC-AGTCTTCGTGTCGGTGTTATTCAG
* * *
32186892 GCTTTGTGCCTAGCAGTCTTTGTGTTGGTGTTATTCAG
1 GCTTTGTGCCTAACAGTCTTCGTGTCGGTGTTATTCAG
32186930 GCTTTGTGC
1 GCTTTGTGC
32186939 TAGCGCTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 2 0.05
38 40 0.95
ACGTcount: A:0.11, C:0.19, G:0.29, T:0.41
Consensus pattern (38 bp):
GCTTTGTGCCTAACAGTCTTCGTGTCGGTGTTATTCAG
Found at i:32197717 original size:79 final size:81
Alignment explanation
Indices: 32197581--32197765 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
32197571 TTGAATGATG
*
32197581 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32197645 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32197660 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32197722 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
32197740 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32197766 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:32197779 original size:40 final size:40
Alignment explanation
Indices: 32197582--32197765 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
32197572 TGAATGATGT
* * * *
32197582 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32197622 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32197662 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32197700 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32197741 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32197766 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32197787 original size:79 final size:79
Alignment explanation
Indices: 32197582--32197798 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
32197572 TGAATGATGT
** * * * **
32197582 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
32197645 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
32197662 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
32197727 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
32197741 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
32197799 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:32205790 original size:40 final size:40
Alignment explanation
Indices: 32205551--32205776 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
32205541 TTGAATGATG
* * * * *
32205551 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
32205591 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
32205631 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32205671 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
32205711 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
32205752 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
32205777 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 162 0.95
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32208682 original size:44 final size:45
Alignment explanation
Indices: 32208631--32208788 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 45
32208621 ATGTGATTTT
32208631 GTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGACATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGACATTTAC
* * * *
32208675 GTGTAAGACCATGTCTGGGACATCGGCATCGTATTTG--ATTT-T
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGACATTTAC
* **
32208717 GTCTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGAC---TAC
1 GTGTAAGACCACGTCTGGGAC-GTTGGCATCG-TATTTGACATTTAC
* *
32208760 ATGTAAGACCACGTCTGGGATGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
32208789 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
42 28 0.30
43 32 0.34
44 28 0.30
45 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (45 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGACATTTAC
Found at i:32216334 original size:44 final size:42
Alignment explanation
Indices: 32216286--32216438 Score: 136
Period size: 44 Copynumber: 3.6 Consensus size: 42
32216276 TGATTTTGTT
*
32216286 TAAGACCACATCTGGGACATTGGCATCGATTTGAGATTTACATG
1 TAAGACCACGTCTGGGACATTGGCATCGATTT--GATTTACATG
* * *
32216330 TAAGACCATGTCTAGGACATCGGCATCGTATTTGATTT-CATG
1 TAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTACATG
* * * *
32216372 T-A-ACC-CTGTCTGAGACAGTGGCATCAATATTTGA-TTAAATG
1 TAAGACCAC-GTCTGGGACATTGGCATC--GATTTGATTTACATG
*
32216413 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACGTCTGGGACATTGGCAT
32216439 TGTACAAGTT
Statistics
Matches: 87, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
40 19 0.22
41 11 0.13
42 6 0.07
43 22 0.25
44 25 0.29
45 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATTGGCATCGATTTGATTTACATG
Found at i:32218187 original size:44 final size:43
Alignment explanation
Indices: 32218119--32218241 Score: 117
Period size: 44 Copynumber: 2.8 Consensus size: 43
32218109 ATTTTCGATA
* *
32218119 TGTTATCGTGTAAGACCAC-GTCTGGGACCTTGGCATCGACT-TCT
1 TGTTTTCGTGTAAGACC-CTGTCTGGGACATTGGCATCGA-TAT-T
* *
32218163 AT-TTTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 -TGTTTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATT
* * * *
32218206 TGTTTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTTTTCGTGTAAGACCCTGTCTGGGACATTGGCAT
32218242 TGTACGAGCT
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 1 0.02
43 31 0.48
44 32 0.49
45 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTTTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATT
Found at i:32218240 original size:43 final size:44
Alignment explanation
Indices: 32218127--32218241 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 44
32218117 TATGTTATCG
* * * *
32218127 TGTAAGACCACGTCTGGGACCTTGGCATCGACTTCTATTTTTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTCTATTTTACA
* *
32218171 TGTAAGACCCTGTCTGGGATAG-TGGCATCGA-TAT-T-TGTTTACA
1 TGTAAGACCATGTCTGGGA-CGTTGGCATCGACT-TCTAT-TTTACA
32218214 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
32218242 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
42 2 0.03
43 30 0.51
44 27 0.46
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGACTTCTATTTTACA
Found at i:32219349 original size:39 final size:39
Alignment explanation
Indices: 32219306--32219382 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
32219296 TTTAGTTATT
* *
32219306 TTAGTTTGTGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTGTGAGTCTTTAATTATGTCATAGTTTGAACATCA
32219345 TTAGTGTGAGTCTTTAATTATGTCATAGTTTGAACATC
1 TTAGTGTGAGTCTTTAATTATGTCATAGTTTGAACATC
32219383 CTTAATATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.26, C:0.10, G:0.17, T:0.47
Consensus pattern (39 bp):
TTAGTGTGAGTCTTTAATTATGTCATAGTTTGAACATCA
Found at i:32219471 original size:50 final size:52
Alignment explanation
Indices: 32219412--32219530 Score: 170
Period size: 50 Copynumber: 2.3 Consensus size: 52
32219402 TTAATAATGT
* *
32219412 CATGCATTATGTAACTCTCATGTAAGTT-AAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGA
* * *
32219462 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGTATCATTAAATTAAGT
1 CATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGA
*
32219514 CATGCATTAAGTAACTC
1 CATGCATTATGTAACTC
32219531 ATTTGTTCAT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 26 0.43
51 11 0.18
52 24 0.39
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGA
Found at i:32221928 original size:35 final size:35
Alignment explanation
Indices: 32221889--32221959 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
32221879 CATCTTCGGA
*
32221889 GCTTGGCAAATATGGAAA-GTAATCTTCAAAGATAT
1 GCTTGGCAAATAT-GAAAGGGAATCTTCAAAGATAT
*
32221924 GCTTGGCAAATATGAAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGAAAGGGAATCTTCAAAGATAT
32221959 G
1 G
32221960 TTATCCTAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (35 bp):
GCTTGGCAAATATGAAAGGGAATCTTCAAAGATAT
Done.