Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 93 of 235
Found at i:32230957 original size:35 final size:35
Alignment explanation
Indices: 32230918--32230988 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
32230908 CATCTTCGGA
*
32230918 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* *
32230953 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
32230988 G
1 G
32230989 TGATCCTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:32233579 original size:25 final size:25
Alignment explanation
Indices: 32233551--32233601 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
32233541 GTCCTTTGAA
*
32233551 CTGAATAACAGTAAGCTCATGCGAG
1 CTGAATAACAGTAAGCTCATACGAG
* *
32233576 CTGAGTATCAGTAAGCTCATACGAG
1 CTGAATAACAGTAAGCTCATACGAG
32233601 C
1 C
32233602 CGAAATTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (25 bp):
CTGAATAACAGTAAGCTCATACGAG
Found at i:32235343 original size:28 final size:28
Alignment explanation
Indices: 32235275--32235514 Score: 349
Period size: 28 Copynumber: 8.5 Consensus size: 28
32235265 CATGAGATTG
* * *
32235275 GCACTAAGTGTGCGGGTTTAAAT-TGTTCA
1 GCACTAAGTGTGCGAGTTTGATTATG-T-A
32235304 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
32235332 GCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGT-A
32235361 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
32235389 GCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGT-A
32235418 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
32235446 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
* *
32235474 GCACTAATTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
32235501 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
32235515 GACTTAATAT
Statistics
Matches: 197, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
27 23 0.12
28 97 0.49
29 75 0.38
30 2 0.01
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:32235364 original size:57 final size:57
Alignment explanation
Indices: 32235303--32235513 Score: 363
Period size: 57 Copynumber: 3.7 Consensus size: 57
32235293 TAAATTGTTC
32235303 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCAAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCAAGTTTGATTATGTA
32235360 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCAAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCAAGTTTGATTATGTA
* *
32235417 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATAT-
1 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCAAGTTTGATTATGTA
* * *
32235473 AGCACTAATTGTGCGAG-TTGATTATATAGCACTGAGTGTGC
1 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGC
32235514 GGACTTAATA
Statistics
Matches: 149, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
55 22 0.15
56 16 0.11
57 111 0.74
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCAAGTTTGATTATGTA
Found at i:32258826 original size:27 final size:27
Alignment explanation
Indices: 32258796--32259162 Score: 348
Period size: 27 Copynumber: 13.6 Consensus size: 27
32258786 TTAGTTTACC
*
32258796 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
32258823 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
32258850 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
32258877 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
32258904 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
32258931 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
32258958 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
32258985 AGATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
32259012 AAATTGCCAAAATACCCCTGA-TTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* **
32259038 AAATTACTAAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
32259065 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* **
32259092 AAATTACCAAAGTACCCCTGATTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
**** *
32259119 AAATTACCGTTTTA-CCCTCGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
32259146 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
32259163 TTTTAGGGTA
Statistics
Matches: 276, Mismatches: 57, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
25 4 0.01
26 22 0.08
27 243 0.88
28 7 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:32258859 original size:54 final size:54
Alignment explanation
Indices: 32258796--32259055 Score: 434
Period size: 54 Copynumber: 4.8 Consensus size: 54
32258786 TTAGTTTACC
32258796 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATA
32258850 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATA
32258904 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATA
* * * *
32258958 AAATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTA-TTTATA
* * *
32259012 AAATTGCCAAAATACCCCT-GATTGTGAAATTACTAAAATACCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
32259056 CGACCTGTAA
Statistics
Matches: 195, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
53 22 0.11
54 173 0.89
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATA
Found at i:32258985 original size:108 final size:108
Alignment explanation
Indices: 32258787--32259126 Score: 436
Period size: 108 Copynumber: 3.2 Consensus size: 108
32258777 TAGAATACTT
**
32258787 TAGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAA
* *
32258852 ATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTT
66 ATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-C
32258896 TA-TTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAA
*
32258960 ATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCCC
66 ATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
* * * * ** ** *
32259003 TAGTTTGTAAAATTGCCAAAATACCCCT-GATTGTGAAATTACTAAAATACCCTCGACCTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAA
*** ** *
32259067 ATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCC
66 ATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCC
*
32259110 T-GATTTACAAAATTACC
1 TAG-TTTATAAAATTACC
32259127 GTTTTACCCT
Statistics
Matches: 204, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
106 5 0.02
107 74 0.36
108 123 0.60
109 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (108 bp):
TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAA
ATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
Found at i:32259184 original size:27 final size:27
Alignment explanation
Indices: 32259147--32259314 Score: 237
Period size: 27 Copynumber: 6.2 Consensus size: 27
32259137 CGATTTATAA
* *
32259147 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
*
32259174 AAATACTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* *
32259201 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
*
32259228 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
*
32259255 AATTACTGAGATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * * *
32259282 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTATAGGGTAG
32259309 AATTAC
1 AATTAC
32259315 CATTTTACCC
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTATAGGGTAG
Found at i:32262918 original size:2 final size:2
Alignment explanation
Indices: 32262911--32262955 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
32262901 AGGCATGCAC
* * * *
32262911 TA TA TA TA CA TA TA TA TA TA GA TA TA TG TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32262953 TA T
1 TA T
32262956 TTATGCCTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (2 bp):
TA
Found at i:32263705 original size:39 final size:39
Alignment explanation
Indices: 32263654--32263838 Score: 307
Period size: 39 Copynumber: 4.7 Consensus size: 39
32263644 TGTGTAAGAT
*
32263654 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
32263693 TTATATCAGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT-G-GTG
32263734 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
32263773 TTATATCAGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
32263812 TTATATCCGGGCTTAGTCTCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
32263839 ATTGTGTTGG
Statistics
Matches: 137, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
39 98 0.72
40 2 0.01
41 37 0.27
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:32263757 original size:80 final size:78
Alignment explanation
Indices: 32263654--32263838 Score: 334
Period size: 80 Copynumber: 2.3 Consensus size: 78
32263644 TGTGTAAGAT
32263654 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAGTCCCGAAGGC
32263719 ATTCGTGCTGGTGTG
66 ATTCGTGCT-G-GTG
*
32263734 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAGTCCCGAAGGC
32263799 ATTCGTGCTGGTG
66 ATTCGTGCTGGTG
*
32263812 TTATATCCGGGCTTAGTCTCGAAGGCA
1 TTATATCCGGGCTAAGTCTCGAAGGCA
32263839 ATTGTGTTGG
Statistics
Matches: 102, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
78 28 0.27
79 1 0.01
80 73 0.72
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (78 bp):
TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAGTCCCGAAGGC
ATTCGTGCTGGTG
Found at i:32268118 original size:38 final size:38
Alignment explanation
Indices: 32268074--32268258 Score: 147
Period size: 38 Copynumber: 4.9 Consensus size: 38
32268064 AATAGAAGCA
* * *
32268074 TAATGTTATTCGGGCTATGTGCCTAGCAGGCTTCGTGC
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
* * * *
32268112 CAATGTTATTC-GAGCTCTATGCCTAGTAGGCTTTGTAC
1 TAATGTTATTCAG-GCTCTATGCCTAGCAGGCTTCGTGC
** ** *
32268150 TGGTGTTATTCAGGCTCTATGCCTAGTTGGCTTTGTGC
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
* * * * *
32268188 TAGTGTTATTCAGACTCTGTGCCTAACAGGATTCGTGC
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
* * * * * *
32268226 TAGTGTTTTTCAAGCTCTGTGTCTAGTAGGCTT
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTT
32268259 TGTGTCGGTG
Statistics
Matches: 119, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 117 0.98
39 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.38
Consensus pattern (38 bp):
TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
Found at i:32268211 original size:76 final size:76
Alignment explanation
Indices: 32268077--32268262 Score: 194
Period size: 76 Copynumber: 2.4 Consensus size: 76
32268067 AGAAGCATAA
* * * * **
32268077 TGTTATTCGGGCTATGTGCCTAGCAGGCTTCGTGCCAATGTTATTCGAGCTCTATGCCTAGTAGG
1 TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTGCCAATGTTATTCGAGCTCTATGCCTAACAGG
* * *
32268142 CTTTGTACTGG
66 ATTCGTACTAG
* * * * *
32268153 TGTTATTCAGGCTCTATGCCTAGTTGGCTTTGTGCTAGTGTTATTC-AGACTCTGTGCCTAACAG
1 TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTGCCAATGTTATTCGAG-CTCTATGCCTAACAG
*
32268217 GATTCGTGCTAG
65 GATTCGTACTAG
* * *
32268229 TGTTTTTCAAGCTCTGTGTCTAGTAGGCTTTGTG
1 TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTG
32268263 TCGGTGTTAT
Statistics
Matches: 89, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
75 2 0.02
76 87 0.98
ACGTcount: A:0.16, C:0.19, G:0.26, T:0.39
Consensus pattern (76 bp):
TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTGCCAATGTTATTCGAGCTCTATGCCTAACAGG
ATTCGTACTAG
Found at i:32268270 original size:38 final size:38
Alignment explanation
Indices: 32268093--32268262 Score: 171
Period size: 38 Copynumber: 4.5 Consensus size: 38
32268083 TCGGGCTATG
* * * * *
32268093 TGCCTAGCAGGCTTCGTGCCAATGTTATTCGAGCTCTA
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
* * *
32268131 TGCCTAGTAGGCTTTGTACTGGTGTTATTCAGGCTCTA
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
* *
32268169 TGCCTAGTTGGCTTTGTGCTAGTGTTATTC-AGACTCTG
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAG-CTCTA
** * * * *
32268207 TGCCTAACAGGATTCGTGCTAGTGTTTTTCAAGCTCTG
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
*
32268245 TGTCTAGTAGGCTTTGTG
1 TGCCTAGTAGGCTTTGTG
32268263 TCGGTGTTAT
Statistics
Matches: 106, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
37 1 0.01
38 103 0.97
39 2 0.02
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.38
Consensus pattern (38 bp):
TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
Found at i:32270109 original size:66 final size:66
Alignment explanation
Indices: 32270030--32270164 Score: 234
Period size: 66 Copynumber: 2.0 Consensus size: 66
32270020 TTGACATAAC
32270030 TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
1 TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
32270095 T
66 T
* * * *
32270096 TTATTGAGATCTCTTATTTTCATTATTTTAATCTTCAGTTCAGGTACCTAGATGTCTTCTGGAGT
1 TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
32270161 T
66 T
32270162 TTA
1 TTA
32270165 CTTATTAGTT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.48
Consensus pattern (66 bp):
TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
T
Found at i:32272753 original size:27 final size:27
Alignment explanation
Indices: 32272736--32272859 Score: 140
Period size: 27 Copynumber: 4.6 Consensus size: 27
32272726 ATATTAAGTC
32272736 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
32272763 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
32272791 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
32272818 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
32272845 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32272860 GCACAATTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 66 0.72
28 26 0.28
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32272821 original size:55 final size:54
Alignment explanation
Indices: 32272736--32272859 Score: 185
Period size: 55 Copynumber: 2.3 Consensus size: 54
32272726 ATATTAAGTC
* *
32272736 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
32272791 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
32272845 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32272860 GCACAATTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 18 0.29
55 45 0.71
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:32280760 original size:27 final size:27
Alignment explanation
Indices: 32280743--32281222 Score: 474
Period size: 27 Copynumber: 17.6 Consensus size: 27
32280733 ATATTAAGTC
32280743 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
32280770 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32280798 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32280825 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32280852 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32280880 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32280908 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32280936 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32280964 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32280991 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
32281018 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32281046 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32281073 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32281100 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32281127 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32281154 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
32281181 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
32281208 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32281223 GCACAATTTA
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32280873 original size:54 final size:54
Alignment explanation
Indices: 32280743--32281222 Score: 852
Period size: 54 Copynumber: 8.8 Consensus size: 54
32280733 ATATTAAGTC
* * * *
32280743 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACT
32280798 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
32280852 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
32280908 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
32280964 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
32281018 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAACT
32281073 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
32281127 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
32281181 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
32281223 GCACAATTTA
Statistics
Matches: 415, Mismatches: 7, Indels: 7
0.97 0.02 0.02
Matches are distributed among these distances:
54 179 0.43
55 153 0.37
56 83 0.20
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
Found at i:32280880 original size:82 final size:82
Alignment explanation
Indices: 32280743--32281222 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
32280733 ATATTAAGTC
* * * *
32280743 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
32280808 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
32280825 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
32280890 GTGCTACATAGTCAAACT
66 GTGCTACATAGTC-AACT
32280908 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
32280973 AGTGCTACATAGTCAACT
65 AGTGCTACATAGTCAACT
*
32280991 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
32281056 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
32281073 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
32281137 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
32281154 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AATTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
32281218 GTGCT
66 GTGCT
32281223 GCACAATTTA
Statistics
Matches: 389, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
81 99 0.25
82 181 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:32283647 original size:40 final size:40
Alignment explanation
Indices: 32283561--32283647 Score: 129
Period size: 40 Copynumber: 2.2 Consensus size: 40
32283551 GGCGTTTGAA
* *
32283561 TAAAAAATGCCGCTAAAGAACGAGCATTAGCGGTGCTTTT
1 TAAAAAATGCCACTAAAGAACGAGCATTAGCGGCGCTTTT
** *
32283601 CGAAAAATGCCACTAAAGAATGAGCATTAGCGGCGCTTTT
1 TAAAAAATGCCACTAAAGAACGAGCATTAGCGGCGCTTTT
32283641 TAAAAAA
1 TAAAAAA
32283648 CATCGCTATA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (40 bp):
TAAAAAATGCCACTAAAGAACGAGCATTAGCGGCGCTTTT
Found at i:32284024 original size:53 final size:53
Alignment explanation
Indices: 32283946--32284055 Score: 157
Period size: 53 Copynumber: 2.1 Consensus size: 53
32283936 CGGCGCTTTT
* * * *
32283946 TTTTTAAAACGCCGCAAAAGAATTTTGTAAAACACCGTCATTTTGTATTGAGC
1 TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACACCATCATTTTATATTGAGC
* * *
32283999 TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACGCCATCGTTTTATATTGAGG
1 TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACACCATCATTTTATATTGAGC
32284052 TTTT
1 TTTT
32284056 TGTGGCTTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (53 bp):
TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACACCATCATTTTATATTGAGC
Found at i:32284491 original size:25 final size:25
Alignment explanation
Indices: 32284461--32284508 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
32284451 ACAGATTATG
*
32284461 GGTTT-AGGGATTATGGTTTAAGGGT
1 GGTTTAAGGG-TTAGGGTTTAAGGGT
*
32284486 GGTTTAAGGGTTGGGGTTTAAGG
1 GGTTTAAGGGTTAGGGTTTAAGG
32284509 TTTAGGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.38
Consensus pattern (25 bp):
GGTTTAAGGGTTAGGGTTTAAGGGT
Found at i:32284510 original size:21 final size:22
Alignment explanation
Indices: 32284486--32284558 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 22
32284476 GTTTAAGGGT
32284486 GGTTTAAGGGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGGTTTAA
32284507 GGTTT-AGGTGTTAGGGG-TTAA
1 GGTTTAAGG-GTTAGGGGTTTAA
* * * *
32284528 GGGTTAAGGGTTAAGGGTTCAT
1 GGTTTAAGGGTTAGGGGTTTAA
32284550 GGTTTAAGG
1 GGTTTAAGG
32284559 TTTATGTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
20 3 0.07
21 23 0.53
22 17 0.40
ACGTcount: A:0.21, C:0.01, G:0.42, T:0.36
Consensus pattern (22 bp):
GGTTTAAGGGTTAGGGGTTTAA
Found at i:32284558 original size:15 final size:14
Alignment explanation
Indices: 32284489--32284546 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
32284479 TAAGGGTGGT
*
32284489 TTAAGGGTT-GGGG
1 TTAAGGGTTAAGGG
*
32284502 TTTAA-GGTTTAGGTG
1 -TTAAGGGTTAAGG-G
*
32284517 TTAGGGGTTAAGGG
1 TTAAGGGTTAAGGG
32284531 TTAAGGGTTAAGGG
1 TTAAGGGTTAAGGG
32284545 TT
1 TT
32284547 CATGGTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
13 4 0.11
14 25 0.68
15 8 0.22
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (14 bp):
TTAAGGGTTAAGGG
Found at i:32284604 original size:7 final size:7
Alignment explanation
Indices: 32284486--32284606 Score: 50
Period size: 7 Copynumber: 17.0 Consensus size: 7
32284476 GTTTAAGGGT
32284486 GGTTTAAG
1 GGTTT-AG
*
32284494 GG-TTGG
1 GGTTTAG
*
32284500 GGTTTAA
1 GGTTTAG
32284507 GGTTTA-
1 GGTTTAG
32284513 GGTGTTAGG
1 GGT-TTA-G
*
32284522 GGTTAAG
1 GGTTTAG
*
32284529 GGTTAAG
1 GGTTTAG
*
32284536 GGTTAAG
1 GGTTTAG
* *
32284543 GGTTCAT
1 GGTTTAG
*
32284550 GGTTTAA
1 GGTTTAG
32284557 GGTTTA-
1 GGTTTAG
* *
32284563 TGTTTTG
1 GGTTTAG
*
32284570 TGTTTTAG
1 -GGTTTAG
*
32284578 GGATTAG
1 GGTTTAG
*
32284585 GGATTAAG
1 GG-TTTAG
*
32284593 AGTTTAG
1 GGTTTAG
32284600 GGTTTAG
1 GGTTTAG
32284607 ATTAATTAGT
Statistics
Matches: 86, Mismatches: 20, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
6 10 0.12
7 61 0.71
8 12 0.14
9 3 0.03
ACGTcount: A:0.21, C:0.01, G:0.38, T:0.40
Consensus pattern (7 bp):
GGTTTAG
Found at i:32284773 original size:22 final size:21
Alignment explanation
Indices: 32284748--32284797 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
32284738 GAGTTACTAT
*
32284748 TTTAAGGTTTATGAATTATGGG
1 TTTAAGGATTATGAATTAT-GG
* **
32284770 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGAATTATGG
32284791 TTTAAGG
1 TTTAAGG
32284798 GTTGGGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGAATTATGG
Found at i:32284806 original size:14 final size:15
Alignment explanation
Indices: 32284789--32284835 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
32284779 TATGGTTTAT
32284789 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
32284803 GGTTTAAGGCTTAGG
1 GGTTTAAGGGTTAGG
*
32284818 GG-TTAGGGGTTAGG
1 GGTTTAAGGGTTAGG
32284832 GGTT
1 GGTT
32284836 AAGTGCTAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 23 0.82
15 5 0.18
ACGTcount: A:0.15, C:0.02, G:0.49, T:0.34
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:32285368 original size:8 final size:8
Alignment explanation
Indices: 32285355--32285402 Score: 55
Period size: 8 Copynumber: 6.2 Consensus size: 8
32285345 TTTTTCAAAA
32285355 AAAAATTT
1 AAAAATTT
32285363 AAAAA-TT
1 AAAAATTT
32285370 AAAAA-TT
1 AAAAATTT
*
32285377 AAAAATTA
1 AAAAATTT
* *
32285385 AAAAACTA
1 AAAAATTT
32285393 AAAAATTT
1 AAAAATTT
32285401 AA
1 AA
32285403 TATTTAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 14 0.40
8 21 0.60
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AAAAATTT
Found at i:32285395 original size:14 final size:14
Alignment explanation
Indices: 32285362--32285396 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
32285352 AAAAAAAATT
*
32285362 TAAAAATTAAAAAT
1 TAAAAATTAAAAAC
32285376 TAAAAATTAAAAAAC
1 TAAAAATT-AAAAAC
32285391 TAAAAA
1 TAAAAA
32285397 ATTTAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAAAATTAAAAAC
Found at i:32285396 original size:7 final size:7
Alignment explanation
Indices: 32285355--32285388 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
32285345 TTTTTCAAAA
32285355 AAAAATTT
1 AAAAA-TT
32285363 AAAAATT
1 AAAAATT
32285370 AAAAATT
1 AAAAATT
32285377 AAAAATT
1 AAAAATT
32285384 AAAAA
1 AAAAA
32285389 ACTAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.81
8 5 0.19
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAAATT
Found at i:32285407 original size:7 final size:7
Alignment explanation
Indices: 32285397--32285421 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32285387 AAACTAAAAA
32285397 ATTTAAT
1 ATTTAAT
32285404 ATTTAAT
1 ATTTAAT
32285411 ATTTAAT
1 ATTTAAT
32285418 ATTT
1 ATTT
32285422 TAGTCTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTAAT
Found at i:32285668 original size:41 final size:39
Alignment explanation
Indices: 32285548--32285670 Score: 113
Period size: 41 Copynumber: 3.1 Consensus size: 39
32285538 AAAAAAAATT
* * * * *
32285548 AAAATTAAGCAATAGTGACGTTTTCTGAAAACGCCACAA
1 AAAATTAAGCTATAGTGGCTTTTTGTGAAAACGCCGCAA
* * **
32285587 AAAGTTAAGCTATAGTAGCGTTTTTG-GAATAAACAACGCAA
1 AAAATTAAGCTATAGTGGC-TTTTTGTG-A-AAACGCCGCAA
32285628 AAAATTAAGCTATAGTGGCATTTTTGTTGAAAACGCCGCAA
1 AAAATTAAGCTATAGTGGC-TTTTTG-TGAAAACGCCGCAA
32285669 AA
1 AA
32285671 GACATTACTT
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
39 16 0.25
40 5 0.08
41 42 0.65
42 1 0.02
43 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (39 bp):
AAAATTAAGCTATAGTGGCTTTTTGTGAAAACGCCGCAA
Found at i:32289181 original size:43 final size:43
Alignment explanation
Indices: 32289134--32289287 Score: 193
Period size: 43 Copynumber: 3.6 Consensus size: 43
32289124 GAAAAAGCAT
*
32289134 CGCTAAAGGTCATGGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
1 CGCTAAAGGTCATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
*
32289177 CGCTAAAGG-CTATAGTCTTTAGCGGCGTTTGCGGGAAAAGCGC
1 CGCTAAAGGTC-ATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
* ** * ** * *
32289220 CGCTAAAGGTCATGGTCTTTAGTAGCATTTTTGAGAAAAGTGC
1 CGCTAAAGGTCATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
*
32289263 CACTAAAGGTCATAGTCTTTAGCGG
1 CGCTAAAGGTCATAGTCTTTAGCGG
32289288 TATTTTTTTA
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 93 0.98
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
CGCTAAAGGTCATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
Found at i:32289241 original size:86 final size:86
Alignment explanation
Indices: 32289067--32289287 Score: 238
Period size: 86 Copynumber: 2.6 Consensus size: 86
32289057 AAAGTTATAT
* * *
32289067 TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTAT--TC--TA-TGGAGTTTGTAGAA
1 TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGG-CTATAGTCTTTAGCGGAGTTTGCAGAA
*
32289127 AAAGCATCGCTAAAGGTCATGG
65 AAAGCACCGCTAAAGGTCATGG
* * * * *
32289149 TCTTTAGCGGCGTTTCCGGGAAAAGCGCCGCTAAAGGCTATAGTCTTTAGCGGCGTTTGCGGGAA
1 TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGGCTATAGTCTTTAGCGGAGTTTGCAGAAA
*
32289214 AAGCGCCGCTAAAGGTCATGG
66 AAGCACCGCTAAAGGTCATGG
** * * * *
32289235 TCTTTAGTAGCATTTTTGAGAAAAGTGCCACTAAAGG-TCATAGTCTTTAGCGG
1 TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGGCT-ATAGTCTTTAGCGG
32289288 TATTTTTTTA
Statistics
Matches: 115, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
81 4 0.03
82 34 0.30
83 2 0.02
85 3 0.03
86 72 0.63
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (86 bp):
TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGGCTATAGTCTTTAGCGGAGTTTGCAGAAA
AAGCACCGCTAAAGGTCATGG
Found at i:32290624 original size:41 final size:41
Alignment explanation
Indices: 32290578--32290660 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
32290568 TAAAAAATAC
32290578 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
1 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
32290619 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
1 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
32290660 T
1 T
32290661 CTTATAGCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.20
Consensus pattern (41 bp):
TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
Found at i:32291133 original size:8 final size:8
Alignment explanation
Indices: 32291115--32291143 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
32291105 ATCATTCATA
32291115 TAAAA-TT
1 TAAAATTT
32291122 TAAAATTT
1 TAAAATTT
32291130 TAAAATTT
1 TAAAATTT
32291138 TAAAAT
1 TAAAAT
32291144 CCAAATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 5 0.24
8 16 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TAAAATTT
Found at i:32301703 original size:15 final size:15
Alignment explanation
Indices: 32301685--32301718 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32301675 GTGACTTGTA
32301685 AAAGGGTGAAAACTG
1 AAAGGGTGAAAACTG
**
32301700 AAAGTTTGAAAACTG
1 AAAGGGTGAAAACTG
32301715 AAAG
1 AAAG
32301719 TTTTAAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.26, T:0.18
Consensus pattern (15 bp):
AAAGGGTGAAAACTG
Found at i:32301719 original size:15 final size:15
Alignment explanation
Indices: 32301691--32301721 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32301681 TGTAAAAGGG
32301691 TGAAAACTGAAAGTT
1 TGAAAACTGAAAGTT
32301706 TGAAAACTGAAAGTT
1 TGAAAACTGAAAGTT
32301721 T
1 T
32301722 TAAAGGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.29
Consensus pattern (15 bp):
TGAAAACTGAAAGTT
Found at i:32320558 original size:19 final size:19
Alignment explanation
Indices: 32320534--32320577 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
32320524 TCATAGCACC
32320534 AAATCACATATTCATGAAG
1 AAATCACATATTCATGAAG
32320553 AAATCACATATTCATGAAG
1 AAATCACATATTCATGAAG
32320572 AAATCA
1 AAATCA
32320578 AAGCATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.50, C:0.16, G:0.09, T:0.25
Consensus pattern (19 bp):
AAATCACATATTCATGAAG
Found at i:32325286 original size:16 final size:15
Alignment explanation
Indices: 32325253--32325292 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
32325243 GTTACTGTTG
*
32325253 TTTTTTTTTCTTTCC
1 TTTTTTTTTATTTCC
*
32325268 TTTTTTATTTATTTTC
1 TTTTTT-TTTATTTCC
32325284 TTTTTTTTT
1 TTTTTTTTT
32325293 TCAAATCTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTTTTATTTCC
Found at i:32325972 original size:3 final size:3
Alignment explanation
Indices: 32325953--32326067 Score: 83
Period size: 3 Copynumber: 39.0 Consensus size: 3
32325943 TTAGTTAATC
* * * * *
32325953 TTA TTA TTT TTA CTA TTA TTA TTA TTA TAA ATA -TA TTA TTA TTC TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * **
32326000 TTA TTA TTA CTA TTA GTA TTA TTT TTA TTA CCA TTA TCT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
32326045 CTA TTA CTA CTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
32326068 GTTTTTACCT
Statistics
Matches: 85, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
2 5 0.06
3 79 0.93
4 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:32326217 original size:15 final size:15
Alignment explanation
Indices: 32326197--32326232 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
32326187 TTTATTACTT
32326197 ATATTATTACCATTA
1 ATATTATTACCATTA
*
32326212 ATATTATTATCATTA
1 ATATTATTACCATTA
*
32326227 CTATTA
1 ATATTA
32326233 CTATCATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTATTACCATTA
Found at i:32326237 original size:15 final size:15
Alignment explanation
Indices: 32326197--32326240 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32326187 TTTATTACTT
* *
32326197 ATATTATTACCATTA
1 ATATTACTATCATTA
*
32326212 ATATTATTATCATTA
1 ATATTACTATCATTA
*
32326227 CTATTACTATCATT
1 ATATTACTATCATT
32326241 TTTTTAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTACTATCATTA
Found at i:32326354 original size:31 final size:29
Alignment explanation
Indices: 32326305--32326368 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 29
32326295 TTTCAATATT
*
32326305 TTTTAGCTTATTTATTATTTCCTTT-TTTA
1 TTTTAGCTTATTTATTA-TTCATTTATTTA
*
32326334 TTTTAGCTTATTCGTTTTATTCATTTATTTA
1 TTTTAGCTTATT--TATTATTCATTTATTTA
32326365 TTTT
1 TTTT
32326369 TTGCTCTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 12 0.40
30 6 0.20
31 12 0.40
ACGTcount: A:0.17, C:0.09, G:0.05, T:0.69
Consensus pattern (29 bp):
TTTTAGCTTATTTATTATTCATTTATTTA
Found at i:32338232 original size:45 final size:44
Alignment explanation
Indices: 32338176--32338892 Score: 399
Period size: 45 Copynumber: 15.8 Consensus size: 44
32338166 AAGTCACTAG
*
32338176 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * * *
32338221 TCTTATTTCCCTGAAGTTGTAATGGA-TAGATTGAAGCTATAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-CA-A-A
* * *
32338271 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-AT-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * *
32338312 CCTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * *
32338357 TCTTAAT-TCCCTGAAGTTACAGTGGAACAGATTGAAGCTATAAATCTCAGA
1 TCTT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A---CAAA
** * ** * *
32338408 TCTTATCTTTCTGAAGTTGCAATAAAGCAGA-TCAA-A-ACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * * * * * *
32338449 CCTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAG-TCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAA
*
32338493 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* **
32338538 TCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGTTATAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-CA-A-A
* * * *
32338589 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCAA-A-ACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * * * * * *
32338630 CCTTATATCCTTGAAGTTGTAGTGGAGCAGGTTGAAG-TCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAA
* * * *
32338674 TTTTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * * *
32338719 TCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG------AT--ACAAA
* * *
32338771 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-ACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * * * **
32338812 -CATTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGTGAA
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * *
32338857 TCTTATTTCCCTAAAGTTGCA-TGGAACAGATTGAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
32338893 CTATAAATAA
Statistics
Matches: 506, Mismatches: 115, Indels: 103
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.00
41 107 0.21
42 14 0.03
43 7 0.01
44 88 0.17
45 144 0.28
46 5 0.01
47 8 0.02
48 3 0.01
49 5 0.01
50 34 0.07
51 60 0.12
52 29 0.06
53 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
Found at i:32338454 original size:137 final size:136
Alignment explanation
Indices: 32338177--32338478 Score: 460
Period size: 137 Copynumber: 2.2 Consensus size: 136
32338167 AGTCACTAGT
* **
32338177 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
* * *
32338242 ATGGATAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAA
66 ATGGACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAAA
*
32338307 TCAAAC
131 ACAAAC
*
32338313 CTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
* * *
32338378 GTGGAACAGATTGAAGCTATAAATCTCAGATCTTATCTTTCTGAAGTTGCAATAAAGCAGATCAA
66 ATGG-ACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
*
32338443 AACAGAC
130 AACAAAC
* * *
32338450 CTTATCTCCCTAAAGTTACGGTGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
32338479 GTTGAAGTCA
Statistics
Matches: 149, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
136 64 0.43
137 85 0.57
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (136 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
ATGGACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAAA
ACAAAC
Found at i:32338485 original size:137 final size:137
Alignment explanation
Indices: 32338177--32338529 Score: 471
Period size: 136 Copynumber: 2.6 Consensus size: 137
32338167 AGTCACTAGT
* *
32338177 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTGCA
* * * *
32338242 ATGG-ATAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
*
32338306 ATCAAAC
131 AACAAAC
* *
32338313 CTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTGCA
* *
32338378 GTGGAACAGATTGAAGCTATAAATCTCAGATCTTATCTTTCTGAAGTTGCAATAAAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
*
32338443 AACAGAC
131 AACAAAC
* * * ** * *
32338450 CTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAG-TCA-CTAGTCTT-ATCTCCCTGAAGTTG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGCAAATCTTAAT-TCCCTGAAGTTG
* *
32338512 CAGTGGAGCAGACTGAAG
64 CAGTGGAACAGATTGAAG
32338530 ATAGCAAATC
Statistics
Matches: 191, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
135 2 0.01
136 98 0.51
137 91 0.48
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (137 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
AACAAAC
Found at i:32338501 original size:181 final size:181
Alignment explanation
Indices: 32338313--32338840 Score: 840
Period size: 181 Copynumber: 2.9 Consensus size: 181
32338303 CAAATCAAAC
* * *
32338313 CTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
* * * *
32338378 GTGGAACAGATTGAAGCTATAAATCTCAGATCTTATCTTTCTGAAGTTGCAATAAAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
* * * *
32338443 AACAGACCTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAGTCACTAGT
131 AACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGT
32338494 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
* * *
32338559 GTGGAATAGATTGAAGTTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
* * *
32338624 AACAAACCTTATATCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCACTAGT
131 AACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGT
* * * *
32338675 TTTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
*
32338740 GTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCA
66 GTGGAACAGATTGAAGCTATAAAT-CACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCA
*
32338805 AAACAAACATTATCTCCCTGAAGTTGCAGTGGAGCA
130 AAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCA
32338841 CACTAAAAAT
Statistics
Matches: 317, Mismatches: 29, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
181 247 0.78
182 70 0.22
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (181 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
AACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGT
Found at i:32338573 original size:89 final size:89
Alignment explanation
Indices: 32338450--32338837 Score: 328
Period size: 89 Copynumber: 4.3 Consensus size: 89
32338440 CAAAACAGAC
* * * * * * *
32338450 CTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGTCACTAGTCTTATCTCTCTGAAGTTGCAG
32338515 TGGAGCAGACTGAAGATAGCAAAT
66 TGGAGCAGACTGAAGATAGCAAAT
*
32338539 CTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGTTATAAATCAC-AGATCTTATCTCTCTGA
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG-------TCACTAG-TCTTATCTCTCTGA
* * * *
32338603 AGTTGCAGTAGAGTAGA-TCAA-A-A-CAAAC
58 AGTTGCAGTGGAGCAGACTGAAGATAGCAAAT
* * * * * *
32338631 CTTATATCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCACTAGTTTTATCTCTCTGAAGTTGCAG
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGTCACTAGTCTTATCTCTCTGAAGTTGCAG
*
32338696 TGAAGCAGACTGAAGATAGCAAAT
66 TGGAGCAGACTGAAGATAGCAAAT
* * *
32338720 CTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGA
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG---TCACT----AG-TCTTATCTCTCTGA
* *
32338785 AGTTGCAGTAGAGCAGA-TCAA-A-A-CAAA-
58 AGTTGCAGTGGAGCAGACTGAAGATAGCAAAT
*
32338812 CATTATCTCCCTGAAGTTGCAGTGGA
1 C-TTATTTCCCTGAAGTTGCAGTGGA
32338838 GCACACTAAA
Statistics
Matches: 239, Mismatches: 38, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
85 31 0.13
86 5 0.02
87 1 0.00
88 1 0.00
89 63 0.26
92 38 0.16
93 27 0.11
94 2 0.01
95 6 0.03
96 37 0.15
97 28 0.12
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (89 bp):
CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGTCACTAGTCTTATCTCTCTGAAGTTGCAG
TGGAGCAGACTGAAGATAGCAAAT
Found at i:32338788 original size:52 final size:49
Alignment explanation
Indices: 32338717--32338939 Score: 148
Period size: 52 Copynumber: 4.7 Consensus size: 49
32338707 GAAGATAGCA
* *
32338717 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AA-CTATAAATAAAC
* * * *
32338768 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T--C-A-AAACAAAC
1 A-ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAACTATAAATAAAC
* * * ***
32338813 -A--TTATCTCCCTGAAGTTGCAGTGGAGC--A--CACTAAAAATAGTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAACTATAAATAAAC
* *
32338855 AATCTTATTTCCCTAAAGTTGCA-TGGAACAGATTGAAGCTATAAATAAAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AA-CTATAAATAAAC
** *
32338905 AGATCTTATCTTTCTAAAGTTGCAGTAGAGCAGAT
1 A-ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAT
32338940 CATAGCAAAC
Statistics
Matches: 131, Mismatches: 25, Indels: 31
0.70 0.13 0.17
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 25 0.19
42 4 0.03
43 2 0.02
44 5 0.04
45 24 0.18
46 2 0.02
47 1 0.01
49 1 0.01
50 9 0.07
51 21 0.16
52 35 0.27
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (49 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAACTATAAATAAAC
Found at i:32338926 original size:137 final size:138
Alignment explanation
Indices: 32338676--32339020 Score: 478
Period size: 137 Copynumber: 2.5 Consensus size: 138
32338666 GTCACTAGTT
* * * * *
32338676 TTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGCAAATCTTATTTCCCTAAAGTTGCAG
*
32338741 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
66 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCAA
32338806 AACAAACA
131 AACAAACA
**
32338814 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGTGAATCTTATTTCCCTAAAGTTGCA-
1 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGCAAATCTTATTTCCCTAAAGTTGCAG
* *
32338878 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTTTCTAAAGTTGCAGTAGAGCAGATCAT
66 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCAA
* *
32338943 AGCAAACC
131 AACAAACA
* * ** * * * * *
32338951 TTATCTCCCTGAAGTTGTAGTGGAGTAGGCTAAAAACTA-CAAACCTTATCTCTCTGAAGTTGCG
1 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAA-TAGCAAATCTTATTTCCCTAAAGTTGCA
32339015 GTGGAA
65 GTGGAA
32339021 TGGATCGAAG
Statistics
Matches: 182, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
137 118 0.65
138 64 0.35
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (138 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGCAAATCTTATTTCCCTAAAGTTGCAG
TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCAA
AACAAACA
Found at i:32339565 original size:23 final size:21
Alignment explanation
Indices: 32339539--32339581 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
32339529 TAAATTTTTG
*
32339539 GGGACATTGAATACAATCAAAAA
1 GGGACATTCAA-AC-ATCAAAAA
*
32339562 GGGAGATTCAAACATCAAAA
1 GGGACATTCAAACATCAAAA
32339582 TAGCAAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (21 bp):
GGGACATTCAAACATCAAAAA
Found at i:32340352 original size:3 final size:3
Alignment explanation
Indices: 32340333--32340486 Score: 113
Period size: 3 Copynumber: 52.7 Consensus size: 3
32340323 TTAGTTAATC
* * * *
32340333 TTA TTA TTT TTA CTA TTA TTA TTA TTA TT- TTA -AA TATA TTC TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * * * *
32340377 TTC TTA TTC TTA TTA TTA CTA TTA GTA TTA TTT TTA TAA CTA TTA TCT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * *
32340425 TTA TTA CTA TTA CTA CTA TTA TTA TTA -TA TTA TTA TTA CTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32340471 TTA TTA TTA -TA TTA TT
1 TTA TTA TTA TTA TTA TT
32340487 TTTTACCTAT
Statistics
Matches: 115, Mismatches: 28, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
2 10 0.09
3 102 0.89
4 3 0.03
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:32341123 original size:54 final size:54
Alignment explanation
Indices: 32341041--32341150 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
32341031 TTAAAATCGC
**
32341041 AATACGAGTTTTGAATAAAATGCTTACTCTCTGCGATTCGAGGTGTTATGCCCT
1 AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTATGCCCT
*
32341095 AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTGTGCCCT
1 AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTATGCCCT
32341149 AA
1 AA
32341151 CTTGCTAGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (54 bp):
AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTATGCCCT
Found at i:32360841 original size:23 final size:23
Alignment explanation
Indices: 32360786--32360841 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
32360776 GTAGGGGACA
*
32360786 CGGGCGTGTACACTGCCTCTACT
1 CGGGCGTGTGCACTGCCTCTACT
*
32360809 CGAGCGTGTGCACTGCCTCTACT
1 CGGGCGTGTGCACTGCCTCTACT
32360832 CGGGCGTGTG
1 CGGGCGTGTG
32360842 AGGCTTAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.11, C:0.32, G:0.32, T:0.25
Consensus pattern (23 bp):
CGGGCGTGTGCACTGCCTCTACT
Found at i:32366692 original size:15 final size:15
Alignment explanation
Indices: 32366672--32366701 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32366662 CTAAATCGTA
32366672 AATAATGTGAAAGGT
1 AATAATGTGAAAGGT
32366687 AATAATGTGAAAGGT
1 AATAATGTGAAAGGT
32366702 TAGGGGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (15 bp):
AATAATGTGAAAGGT
Found at i:32367324 original size:60 final size:60
Alignment explanation
Indices: 32367231--32367370 Score: 262
Period size: 60 Copynumber: 2.3 Consensus size: 60
32367221 TAGGGTTTGA
* *
32367231 ATTTAGCCTGGACTGATAATTTAGATCCGAGCTCATTATAGCTGTTTTTCACTACAAGGG
1 ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
32367291 ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
1 ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
32367351 ATTTAGCCTGGACTGGTAAT
1 ATTTAGCCTGGACTGGTAAT
32367371 CCCACCGTAA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
60 78 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (60 bp):
ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
Found at i:32372514 original size:48 final size:48
Alignment explanation
Indices: 32372440--32372769 Score: 231
Period size: 48 Copynumber: 6.9 Consensus size: 48
32372430 GGTGAATTGT
* * *
32372440 CGATGCCATGTTCCA-AAATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* ** *** * * *
32372487 CGATGCCATGGCCCAGACATGGTCTTACACTAACTCTTGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* * * * *
32372535 CGATGGCATGTCCCAGA-AGTGGTCTTAAACTGGCCCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACA-TGGTCTTACACTGGCTCACAT-ATCGAGGC
* * * * * * * *
32372583 TGATGCCATGTCCTAGACATGGTCTTATACTAGCGCACAAATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* *
32372631 CGATGCCATGTCCCAGACAAGGTCTTACACTAGCTCTCACAATATC-A--C
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCAC-ATATCGAGGC
* * * * * * *
32372679 CAATGCCATGTTCCAAACTTGGTCTTACACTGGCTCTCATTTCGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* * * *
32372727 CGACGCCATGTCCCAGACATGGTCTTACATTGACACACATATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC
32372770 ACCCAAATGT
Statistics
Matches: 211, Mismatches: 61, Indels: 21
0.72 0.21 0.07
Matches are distributed among these distances:
45 4 0.02
46 4 0.02
47 17 0.08
48 175 0.83
49 2 0.01
50 5 0.02
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
Found at i:32372991 original size:12 final size:12
Alignment explanation
Indices: 32372974--32373000 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32372964 TTGTATTTAG
32372974 TCATCATATTAA
1 TCATCATATTAA
32372986 TCATCATATTAA
1 TCATCATATTAA
32372998 TCA
1 TCA
32373001 ATGCATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (12 bp):
TCATCATATTAA
Found at i:32374429 original size:28 final size:28
Alignment explanation
Indices: 32374389--32374445 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
32374379 TAAAGCGTCC
32374389 TTCAAACAATAACAAATTACCTTAACTT
1 TTCAAACAATAACAAATTACCTTAACTT
32374417 TTCAAACAATAACAAATTACCTTAACTT
1 TTCAAACAATAACAAATTACCTTAACTT
32374445 T
1 T
32374446 CTCTTCGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (28 bp):
TTCAAACAATAACAAATTACCTTAACTT
Found at i:32384787 original size:28 final size:29
Alignment explanation
Indices: 32384754--32384854 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
32384744 TATAGTAAGT
* * *
32384754 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
32384782 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
32384811 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
32384840 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
32384855 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:32394997 original size:48 final size:48
Alignment explanation
Indices: 32394940--32395258 Score: 242
Period size: 48 Copynumber: 6.6 Consensus size: 48
32394930 AGGATGAATT
** * *
32394940 GCCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTCAAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* ** * * * * * * *
32394988 GTCGATGCCACATCCTAGACATGGCCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * * * **
32395036 GCCAATGCCATATCCCAAACATGGTCTTACACTGGCTCTTATAACGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * * ** * * *
32395084 GCCGATACCATGTCCCAGACATGGTTTTACACTAACGCACATATCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * * * * * **
32395132 GCTGATGCCATGTCCCAGACATAGTCTTACATTGGCTCTCACAACATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* ** **
32395180 GCCAATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
** *
32395228 GCCGACACCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAAACATGGTCTTACA
32395259 TTGACACACA
Statistics
Matches: 200, Mismatches: 71, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
48 200 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
Found at i:32403382 original size:9 final size:9
Alignment explanation
Indices: 32403377--32403405 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
32403367 AAATAACAGC
32403377 CTTAACATG
1 CTTAACATG
32403386 CTTAACATG
1 CTTAACATG
32403395 CTTAACATG
1 CTTAACATG
32403404 CT
1 CT
32403406 CGTATACAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.34
Consensus pattern (9 bp):
CTTAACATG
Found at i:32416062 original size:13 final size:13
Alignment explanation
Indices: 32416046--32416070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32416036 TTAAATCAGT
32416046 TAATTAGTTTAAA
1 TAATTAGTTTAAA
32416059 TAATTAGTTTAA
1 TAATTAGTTTAA
32416071 TAAAAAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:32420342 original size:27 final size:27
Alignment explanation
Indices: 32420311--32420501 Score: 177
Period size: 27 Copynumber: 7.1 Consensus size: 27
32420301 GTCGTTAAAA
*
32420311 CCCCAATTTGTAAAATTACAAAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * *
32420338 CCCCAGTTTGTAAAATTATCAAAGTAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * * **
32420365 CCTCGATTTGTAAAATGATTAAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * *
32420392 CCTCAAGTTGTAAAATTACCGAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* **
32420419 CCTCAGA-TTACAAAATTACCAAAATAC
1 CCCCA-ATTTGTAAAATTACCAAAATAC
* * *
32420446 CCCCAGTTTGTAAAACTACCAAATTAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * *
32420473 CCCCGATTTGTAAAATTATCGAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
32420500 CC
1 CC
32420502 TTGTAGTGTA
Statistics
Matches: 131, Mismatches: 31, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
27 130 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (27 bp):
CCCCAATTTGTAAAATTACCAAAATAC
Found at i:32420403 original size:54 final size:53
Alignment explanation
Indices: 32420316--32420501 Score: 205
Period size: 54 Copynumber: 3.5 Consensus size: 53
32420306 TAAAACCCCA
* *
32420316 ATTTGTAAAATTACAAAAATACCCCCAGTTTGTAAAATTATCAAAGTACCCTCG
1 ATTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAA-TACCCTCG
* ** *
32420370 ATTTGTAAAATGATTAAAATACCCTCAAG-TTGTAAAATTACCGAAATACCCTCAG
1 ATTTGTAAAATTACCAAAATACCC-CCAGTTTGTAAAATTACC-AAATACCCTC-G
** * *
32420425 A-TTACAAAATTACCAAAATACCCCCAGTTTGTAAAACTACCAAATTACCCCCG
1 ATTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAA-TACCCTCG
* *
32420478 ATTTGTAAAATTATCGAAATACCC
1 ATTTGTAAAATTACCAAAATACCC
32420502 TTGTAGTGTA
Statistics
Matches: 109, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
53 8 0.07
54 93 0.85
55 8 0.07
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (53 bp):
ATTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAATACCCTCG
Found at i:32420456 original size:81 final size:80
Alignment explanation
Indices: 32420310--32420502 Score: 201
Period size: 81 Copynumber: 2.4 Consensus size: 80
32420300 GGTCGTTAAA
** * * ** * * *
32420310 ACCCCAATTTGTAAAATTACAAAAATACCCCCAGTTTGTAAAATTATCAAAGTACCCTCGATTTG
1 ACCCCAATTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCCGATTTG
**
32420375 TAAAA-TGATTAAAAT
66 TAAAACT-ACCAAAAT
*
32420390 ACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCC-AGTT
1 ACCC-CAATTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCCGA-TT
*
32420454 TGTAAAACTACCAAATT
64 TGTAAAACTACCAAAAT
* *
32420471 ACCCCCGATTTGTAAAATTATCGAAATACCCT
1 A-CCCCAATTTGTAAAATTACCGAAATACCCT
32420503 TGTAGTGTAA
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
80 5 0.05
81 84 0.90
82 4 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.27
Consensus pattern (80 bp):
ACCCCAATTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCCGATTTG
TAAAACTACCAAAAT
Found at i:32420511 original size:27 final size:27
Alignment explanation
Indices: 32420481--32420534 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
32420471 ACCCCCGATT
*
32420481 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
32420508 TGTAAGATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
32420535 GGTTAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:32420512 original size:108 final size:108
Alignment explanation
Indices: 32420322--32420529 Score: 301
Period size: 108 Copynumber: 1.9 Consensus size: 108
32420312 CCCAATTTGT
* * * *
32420322 AAAATTACAAAAATACCCCCAGTTTGTAAAATTATCAAAGTACCCTCGATTTGTAAAATGATTAA
1 AAAATTACAAAAATACCCCCAGTTTGTAAAACTACCAAAGTACCCCCGATTTGTAAAATGATCAA
32420387 AATACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTAC
66 AATACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTAC
* * * *
32420430 AAAATTACCAAAATACCCCCAGTTTGTAAAACTACCAAATTACCCCCGATTTGTAAAATTATCGA
1 AAAATTACAAAAATACCCCCAGTTTGTAAAACTACCAAAGTACCCCCGATTTGTAAAATGATCAA
** *
32420495 AATACCCTTGTAG-TGTAAGATTACCGAAATACCCT
66 AATACCC-TCAAGTTGTAAAATTACCGAAATACCCT
32420530 TGTAGGGTTA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 85 0.97
109 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (108 bp):
AAAATTACAAAAATACCCCCAGTTTGTAAAACTACCAAAGTACCCCCGATTTGTAAAATGATCAA
AATACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTAC
Found at i:32427571 original size:47 final size:47
Alignment explanation
Indices: 32427464--32427595 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 47
32427454 GTGCAAGCGA
* * * * * *
32427464 TACCTTGATTTGTCTACGGGCCATGGTATAAGTATTTTGGAGAAGTGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA-CTTCGAGAAGAGT
* *
32427512 TACCTTAATTTGGCTATGGGTCATGGTATAGGTACTTCGAGATA-AGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTCGAGA-AGAGT
* *
32427559 TACCTTGATTTGGATATAGGCCATGGTATAGGTACTT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTT
32427596 ATCGATTGAG
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
47 41 0.58
48 30 0.42
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTCGAGAAGAGT
Found at i:32436409 original size:34 final size:34
Alignment explanation
Indices: 32436383--32436447 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
32436373 TATTAGTTAG
*
32436383 GGCCATAGCCCATTACAGTATCAGTATCAGTGTA
1 GGCCATAGCCCATTACAGTAACAGTATCAGTGTA
* *
32436417 GGCCTTAGCCCATTACAGTAACAGTAACAGT
1 GGCCATAGCCCATTACAGTAACAGTATCAGT
32436448 AATACAATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (34 bp):
GGCCATAGCCCATTACAGTAACAGTATCAGTGTA
Found at i:32436822 original size:33 final size:33
Alignment explanation
Indices: 32436776--32436840 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
32436766 GGGGTCTAGG
*
32436776 TATACTTATCGACCCAATAGCAGGTCCACATTA
1 TATACTTACCGACCCAATAGCAGGTCCACATTA
* *
32436809 TATACTTGCCGACCCAATAGTAGGTCCACATT
1 TATACTTACCGACCCAATAGCAGGTCCACATT
32436841 CATCTCGAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (33 bp):
TATACTTACCGACCCAATAGCAGGTCCACATTA
Found at i:32444127 original size:12 final size:13
Alignment explanation
Indices: 32444110--32444138 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32444100 GCAATTTAAA
32444110 TTTTATT-CTAAT
1 TTTTATTACTAAT
32444122 TTTTATTACTAAT
1 TTTTATTACTAAT
32444135 TTTT
1 TTTT
32444139 CTTTTTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTATTACTAAT
Found at i:32446860 original size:13 final size:13
Alignment explanation
Indices: 32446842--32446879 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
32446832 AAAAAAGACA
*
32446842 GACACGGCCGTGC
1 GACACGGTCGTGC
32446855 GACACGGTCGTGC
1 GACACGGTCGTGC
32446868 GACACGGTCGTG
1 GACACGGTCGTG
32446880 TGCACCAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.16, C:0.32, G:0.39, T:0.13
Consensus pattern (13 bp):
GACACGGTCGTGC
Found at i:32451933 original size:44 final size:42
Alignment explanation
Indices: 32451811--32451948 Score: 143
Period size: 44 Copynumber: 3.2 Consensus size: 42
32451801 CCCAGATGTT
* * * * * *
32451811 GTCTTACATGAAATCAAATATTGATGTCACTGTCCCAGATAGG
1 GTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGACATG
* * *
32451854 GTCTTCCACGAAATCATATACGATTCCAATGTCCCAGACATG
1 GTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACATG
*
32451896 GTCTTACACGTAAATAACAAAT-CGATGCCAATGTCCCAGACTTG
1 GTCTTACACG-AAAT--CAAATACGATGCCAATGTCCCAGACATG
32451940 GTCTTACAC
1 GTCTTACAC
32451949 AATAACACAT
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
42 25 0.32
43 21 0.27
44 29 0.37
45 4 0.05
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
GTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACATG
Found at i:32457197 original size:51 final size:50
Alignment explanation
Indices: 32457120--32457297 Score: 191
Period size: 52 Copynumber: 3.5 Consensus size: 50
32457110 CGGATACTCG
* *
32457120 GTGG-CTTGCACATAGTACCACCCTTGTAGTCAAAGCAACCTTCTTCACAAA
1 GTGGCCTT-CACATAGTACCACACTTGT-GACAAAGCAACCTTCTTCACAAA
* * * *
32457171 GTGGCCTTCACATAGTACTACACTTGTGACCAAAGCTATCTTTCTTCAAAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CAAAGC-AACCTTCTTCACAAA
* * * * *
32457223 GTGGCCTTC-CTATAGTACCACACTTGCGACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCAC-ATAGTACCACACTTGTGACAAAGCAACCTTCTTCACAAA
32457272 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
32457298 AGTTACTAGT
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
49 32 0.30
50 2 0.02
51 33 0.31
52 40 0.37
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACAAAGCAACCTTCTTCACAAA
Found at i:32457238 original size:52 final size:51
Alignment explanation
Indices: 32457159--32457297 Score: 196
Period size: 52 Copynumber: 2.7 Consensus size: 51
32457149 TCAAAGCAAC
* *
32457159 CTTCTTCACAAAGTGGCCTTCACATAGTACTACACTTGTGACCAAAGCTATCT
1 CTTCTTCA-AAAGTGGCCTTCACATAGTACCACACTTGCGACC-AAGCTATCT
32457212 -TTCTTCAAAAAGTGGCCTTC-CTATAGTACCACACTTGCGACCAAGCTATCT
1 CTTCTTC-AAAAGTGGCCTTCAC-ATAGTACCACACTTGCGACCAAGCTATCT
32457263 CTTC-TC-AAAGTGGCCTTCACATAGTACCACACTTG
1 CTTCTTCAAAAGTGGCCTTCACATAGTACCACACTTG
32457298 AGTTACTAGT
Statistics
Matches: 80, Mismatches: 2, Indels: 12
0.85 0.02 0.13
Matches are distributed among these distances:
49 27 0.34
50 1 0.01
51 12 0.15
52 39 0.49
53 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.29
Consensus pattern (51 bp):
CTTCTTCAAAAGTGGCCTTCACATAGTACCACACTTGCGACCAAGCTATCT
Found at i:32459765 original size:19 final size:19
Alignment explanation
Indices: 32459743--32459787 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
32459733 GCAATATTCC
32459743 GATTTTCATGCCATATCAA
1 GATTTTCATGCCATATCAA
*
32459762 GATTTTCATGCCATGTCAA
1 GATTTTCATGCCATATCAA
32459781 GAGTTTT
1 GA-TTTT
32459788 ATGTCCGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (19 bp):
GATTTTCATGCCATATCAA
Found at i:32460650 original size:20 final size:20
Alignment explanation
Indices: 32460625--32460664 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32460615 TGTATCCATA
*
32460625 AAATTTCAAAATTTTTCATT
1 AAATTTCAAAACTTTTCATT
* *
32460645 AAATTTTACAACTTTTCATT
1 AAATTTCAAAACTTTTCATT
32460665 TTATTCCCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (20 bp):
AAATTTCAAAACTTTTCATT
Found at i:32461728 original size:27 final size:27
Alignment explanation
Indices: 32461663--32461728 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
32461653 AAAACACCAG
*
32461663 CTCGCCAGGCCCTCTAAGGAACCCCAA
1 CTCGCCAGGCCTTCTAAGGAACCCCAA
* * *
32461690 CTTGCCAAGCCTTCT-AGAGAACCCTAA
1 CTCGCCAGGCCTTCTAAG-GAACCCCAA
*
32461717 CTCGTCAGGCCT
1 CTCGCCAGGCCT
32461729 ACTGGCAAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.18
Consensus pattern (27 bp):
CTCGCCAGGCCTTCTAAGGAACCCCAA
Found at i:32463768 original size:22 final size:22
Alignment explanation
Indices: 32463738--32463785 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
32463728 GTGATGCAGA
*
32463738 CCGTGTGTCACACACGGTCTAC
1 CCGTATGTCACACACGGTCTAC
32463760 CCGTATGTCACACACGGTCTAC
1 CCGTATGTCACACACGGTCTAC
32463782 CCGT
1 CCGT
32463786 GTGGCCCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.38, G:0.21, T:0.23
Consensus pattern (22 bp):
CCGTATGTCACACACGGTCTAC
Found at i:32465146 original size:31 final size:31
Alignment explanation
Indices: 32465110--32465203 Score: 103
Period size: 31 Copynumber: 3.2 Consensus size: 31
32465100 TAATAACAAT
32465110 AAAACATTTATCACATAATATCAAAACATTA
1 AAAACATTTATCACATAATATCAAAACATTA
* * *
32465141 AAAACA--TATAAC-TCATA--ATAACA--A
1 AAAACATTTATCACATAATATCAAAACATTA
32465165 GAAAACATTTATCACATAATATCAAAACATTA
1 -AAAACATTTATCACATAATATCAAAACATTA
32465197 AAAACAT
1 AAAACAT
32465204 GCTACAACAC
Statistics
Matches: 49, Mismatches: 6, Indels: 16
0.69 0.08 0.23
Matches are distributed among these distances:
24 1 0.02
25 6 0.12
26 5 0.10
27 5 0.10
28 8 0.16
29 5 0.10
30 5 0.10
31 13 0.27
32 1 0.02
ACGTcount: A:0.57, C:0.16, G:0.01, T:0.26
Consensus pattern (31 bp):
AAAACATTTATCACATAATATCAAAACATTA
Found at i:32465155 original size:56 final size:56
Alignment explanation
Indices: 32465090--32465203 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
32465080 ACCAATAAGT
*
32465090 ATATAACTCATAATAACAATAAAACATTTATCACATAATATCAAAACATTAAAAAC
1 ATATAACTCATAATAACAAGAAAACATTTATCACATAATATCAAAACATTAAAAAC
32465146 ATATAACTCATAATAACAAGAAAACATTTATCACATAATATCAAAACATTAAAAAC
1 ATATAACTCATAATAACAAGAAAACATTTATCACATAATATCAAAACATTAAAAAC
32465202 AT
1 AT
32465204 GCTACAACAC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.57, C:0.16, G:0.01, T:0.26
Consensus pattern (56 bp):
ATATAACTCATAATAACAAGAAAACATTTATCACATAATATCAAAACATTAAAAAC
Found at i:32473934 original size:37 final size:37
Alignment explanation
Indices: 32473884--32473962 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32473874 TTATTACGAA
* * *
32473884 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32473921 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32473958 GTCTT
1 GTCTT
32473963 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32474207 original size:47 final size:47
Alignment explanation
Indices: 32474081--32474414 Score: 535
Period size: 47 Copynumber: 7.0 Consensus size: 47
32474071 CCCTTCGGGA
* * * * * *
32474081 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
32474129 CTGTCA-CATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CT-T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32474177 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32474224 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32474271 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32474318 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32474367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32474414 C
1 C
32474415 ATACTATCAT
Statistics
Matches: 269, Mismatches: 12, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 182 0.68
48 8 0.03
49 77 0.29
50 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32474285 original size:96 final size:94
Alignment explanation
Indices: 32474081--32474414 Score: 535
Period size: 96 Copynumber: 3.5 Consensus size: 94
32474071 CCCTTCGGGA
* * * * * * *
32474081 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCAGCCCTGTCA-CATATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCT-T-ATCACATATATA
*
32474145 CACTTCCACATTCATCACATCGGCCATTAGGC
63 CACTTTCACATTCATCACATCGGCCATTAGGC
32474177 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32474242 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32474271 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32474336 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32474367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
32474415 ATACTATCAT
Statistics
Matches: 225, Mismatches: 10, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 95 0.42
95 6 0.03
96 123 0.55
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:32474339 original size:143 final size:142
Alignment explanation
Indices: 32474081--32474414 Score: 537
Period size: 143 Copynumber: 2.3 Consensus size: 142
32474071 CCCTTCGGGA
* * * * * * *
32474081 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCAGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTGTCACACATATATAC
*
32474146 ACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTCCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
32474211 TCGGCCATTAGGC
130 TCGGCCATTAGGC
32474224 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-T-ATCACATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTGTCA-CACATATATAC
*
32474287 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTCCACATTCATCACATCGGCCATTAAGCCTTATCAC--ATATATACACTTTCACATTCATCA
32474352 CATCGGCCATTAGGC
128 CATCGGCCATTAGGC
32474367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
32474415 ATACTATCAT
Statistics
Matches: 179, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
140 1 0.01
141 48 0.27
142 6 0.03
143 124 0.69
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTGTCACACATATATACA
CTTCCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:32478143 original size:57 final size:58
Alignment explanation
Indices: 32478052--32478183 Score: 171
Period size: 57 Copynumber: 2.3 Consensus size: 58
32478042 GAAACACACT
* *
32478052 TCGCATACACAGTGCC-C-ACTAACTGATTTCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACACAGTGCCTCAACTAACTGATCTCGCACACATAGCGCTCGATTGAAGAAC
* * * * *
32478108 TCGCACACATAGTGCCTCAACT-ACTGATCTGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACACAGTGCCTCAACTAACTGATCTCGCACACATAGCGCTCGATTGAAGAAC
*
32478165 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
32478184 TAATTCCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 14 0.22
57 48 0.74
58 3 0.05
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (58 bp):
TCGCACACACAGTGCCTCAACTAACTGATCTCGCACACATAGCGCTCGATTGAAGAAC
Found at i:32478260 original size:40 final size:40
Alignment explanation
Indices: 32478211--32478447 Score: 438
Period size: 40 Copynumber: 5.9 Consensus size: 40
32478201 CCTTCGAGGT
32478211 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* * *
32478251 TTAGTCCGGATATATCACTAGTACGAATGCTCTTTGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
32478291 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32478331 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32478371 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32478411 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG
32478448 NNNNNNNNNN
Statistics
Matches: 189, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 189 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:32479867 original size:37 final size:37
Alignment explanation
Indices: 32479806--32479884 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
32479796 TTATTACGAA
* * * *
32479806 GTCTCACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32479843 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32479880 GTCTT
1 GTCTT
32479885 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32480369 original size:62 final size:62
Alignment explanation
Indices: 32480296--32480425 Score: 260
Period size: 62 Copynumber: 2.1 Consensus size: 62
32480286 ACATAACCAC
32480296 AAATTCTCTACAAGCTGTTTTCCTGAGCAACAGTCGTTAAATTATTTGTAACTGGGGCTACG
1 AAATTCTCTACAAGCTGTTTTCCTGAGCAACAGTCGTTAAATTATTTGTAACTGGGGCTACG
32480358 AAATTCTCTACAAGCTGTTTTCCTGAGCAACAGTCGTTAAATTATTTGTAACTGGGGCTACG
1 AAATTCTCTACAAGCTGTTTTCCTGAGCAACAGTCGTTAAATTATTTGTAACTGGGGCTACG
32480420 AAATTC
1 AAATTC
32480426 CAAATTATGT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 68 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (62 bp):
AAATTCTCTACAAGCTGTTTTCCTGAGCAACAGTCGTTAAATTATTTGTAACTGGGGCTACG
Found at i:32483170 original size:55 final size:53
Alignment explanation
Indices: 32483015--32483159 Score: 164
Period size: 53 Copynumber: 2.7 Consensus size: 53
32483005 TTCCTTTTTA
* *
32483015 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATG
* * * * * *
32483068 AACTCACCATTGACATGCCTTGGCCTGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-G
** * *
32483122 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATG
32483160 ATTTCCTTGC
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 46 0.61
54 1 0.01
55 28 0.37
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATG
Found at i:32484930 original size:20 final size:20
Alignment explanation
Indices: 32484905--32484947 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32484895 ATCTTGCTAA
32484905 AAATTCAAAGAAAAAGAAAG
1 AAATTCAAAGAAAAAGAAAG
32484925 AAATTCAAAGAAAAAGAAAG
1 AAATTCAAAGAAAAAGAAAG
32484945 AAA
1 AAA
32484948 ATAAACTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.72, C:0.05, G:0.14, T:0.09
Consensus pattern (20 bp):
AAATTCAAAGAAAAAGAAAG
Found at i:32485892 original size:43 final size:43
Alignment explanation
Indices: 32485745--32485903 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
32485735 TGTGTTATCG
* *
32485745 TGTAAGACCACGTCTGGGAC-GTTGGCATTGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACAG-TGGCATTGA-TATTTGA-TTACA
* * * *
32485789 TGTAAGACCACGTCTGAGACATTGGCA-TCATATTTGATTTCA
1 TGTAAGACCACGTCTGGGACAGTGGCATTGATATTTGATTACA
** * *
32485831 TGTAAGACCTTGTTTGGGACAGTGACATTGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATTGATATTTGATTACA
32485874 TGTAAGACCACGTCTGGGAC-GTTGGCATTG
1 TGTAAGACCACGTCTGGGACAG-TGGCATTG
32485904 TAGAAGCTTT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 26 0.28
43 43 0.46
44 24 0.26
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATTGATATTTGATTACA
Found at i:32489526 original size:13 final size:13
Alignment explanation
Indices: 32489508--32489545 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
32489498 GTTTTTACAT
32489508 TTATGCATGATTA
1 TTATGCATGATTA
32489521 TTATGCATGATTA
1 TTATGCATGATTA
*
32489534 CTATGACATGAT
1 TTATG-CATGAT
32489546 CAGAGTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (13 bp):
TTATGCATGATTA
Found at i:32489722 original size:23 final size:23
Alignment explanation
Indices: 32489696--32489742 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32489686 CGCCTGTTGA
32489696 TGTTTTAACCTGTGTCTTAGGCT
1 TGTTTTAACCTGTGTCTTAGGCT
32489719 TGTTTTAACCTGTGTCTTAGGCT
1 TGTTTTAACCTGTGTCTTAGGCT
32489742 T
1 T
32489743 ACTCCCTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.13, C:0.17, G:0.21, T:0.49
Consensus pattern (23 bp):
TGTTTTAACCTGTGTCTTAGGCT
Found at i:32494752 original size:131 final size:131
Alignment explanation
Indices: 32494518--32494779 Score: 427
Period size: 131 Copynumber: 2.0 Consensus size: 131
32494508 GTAATGGAAA
* * * *
32494518 GTGTGAAGTACATTACAGCATCCACTGTGCCTTTGACTATGTTCAGTGATATTGTTAAACAACTT
1 GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTTCAGTGACATTGTTAAACAACTT
* * * *
32494583 TAGTTGCCAAATAAGAGGTTGATTTTAGATTGTTGTACATGGTGGAATGCAACATATGCTATGTT
66 CAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTT
32494648 G
131 G
*
32494649 GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTAT-TTCCAGTGACATTGTTAAGCAACT
1 GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTT-CAGTGACATTGTTAAACAACT
32494713 TCAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGT
65 TCAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGT
32494778 TG
130 TG
32494780 TCATGTGTAT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
130 2 0.02
131 119 0.98
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (131 bp):
GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTTCAGTGACATTGTTAAACAACTT
CAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTT
G
Found at i:32499176 original size:46 final size:46
Alignment explanation
Indices: 32499126--32499301 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
32499116 TGATTGAGCA
*
32499126 TCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
* ** *
32499172 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAA-T--G
* *
32499217 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
* *
32499265 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGG
32499302 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 1 0.01
46 61 0.57
47 28 0.26
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
Found at i:32499282 original size:93 final size:93
Alignment explanation
Indices: 32499123--32499293 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32499113 GGATGATTGA
* *
32499123 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
32499188 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
32499216 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
32499281 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32499294 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:32502329 original size:65 final size:65
Alignment explanation
Indices: 32502225--32502355 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
32502215 CCCCTAGGGT
* * *
32502225 TAAGGTTGACCTGAATGCATGTTTGACTGTTGCTATTTACTGCATGTCGTGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
32502290 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
32502355 T
1 T
32502356 GCATGGGACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.43
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:32513559 original size:26 final size:26
Alignment explanation
Indices: 32513511--32513561 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32513501 CTCAAAATGG
* *
32513511 AACACTTAAAAAGAATTCCTAAAGAA
1 AACACTAAAAAAGAATCCCTAAAGAA
32513537 AACACTAAAAAAGAA-CCCATAAAGA
1 AACACTAAAAAAGAATCCC-TAAAGA
32513562 TTCAAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.61, C:0.18, G:0.08, T:0.14
Consensus pattern (26 bp):
AACACTAAAAAAGAATCCCTAAAGAA
Found at i:32514524 original size:108 final size:108
Alignment explanation
Indices: 32514335--32514549 Score: 331
Period size: 108 Copynumber: 2.0 Consensus size: 108
32514325 GCTTATGGTG
* * * * *
32514335 ATTGTAACAGCTCGATATCGGGCCTAGTTGGAACAATGGTTTCAGGACCACAAATCCGATGCAAG
1 ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
*
32514400 AAAATTTATTTTTATTATATTTTTATGGTCTACAATTTCACGA
66 AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACGA
* * * * *
32514443 ATTGTAACAGCTCAATTTTGGGACTAGTCGAAACAGTGGTTTCGGGACCACAAATCCGACGTAAG
1 ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
32514508 AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACG
66 AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACG
32514550 GAATGATTTC
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 96 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (108 bp):
ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACGA
Found at i:32518860 original size:13 final size:13
Alignment explanation
Indices: 32518827--32518860 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
32518817 ATTCCATTCA
*
32518827 GTTCCATCCTTTT
1 GTTCCATCCTTTC
32518840 GTTCCATCCTTTC
1 GTTCCATCCTTTC
*
32518853 GTTTCATC
1 GTTCCATC
32518861 ATAATCGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.32, G:0.09, T:0.50
Consensus pattern (13 bp):
GTTCCATCCTTTC
Found at i:32519235 original size:11 final size:11
Alignment explanation
Indices: 32519221--32519264 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
32519211 AAAAAAGTTC
32519221 AAAATTCAAAA
1 AAAATTCAAAA
**
32519232 AAAATTTGGAAA
1 AAAA-TTCAAAA
*
32519244 AAAATTCGAAA
1 AAAATTCAAAA
32519255 AAAATTCAAA
1 AAAATTCAAA
32519265 TTAGAACATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (11 bp):
AAAATTCAAAA
Found at i:32525667 original size:28 final size:30
Alignment explanation
Indices: 32525602--32525670 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
32525592 ATGTGTCCCA
* *
32525602 GCCGTGTGTGTGACACGGTCAGGTTACACG
1 GCCGTGTGTGTCACACGGTCAAGTTACACG
* *
32525632 GCCGTGTGTGTCACACTGTCAAGTTACATG
1 GCCGTGTGTGTCACACGGTCAAGTTACACG
*
32525662 GCTGTGTGT
1 GCCGTGTGT
32525671 CCCCTGGTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.16, C:0.22, G:0.33, T:0.29
Consensus pattern (30 bp):
GCCGTGTGTGTCACACGGTCAAGTTACACG
Found at i:32525792 original size:12 final size:12
Alignment explanation
Indices: 32525775--32525801 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32525765 GATAGGTTTG
32525775 ACACGGCCTAGC
1 ACACGGCCTAGC
32525787 ACACGGCCTAGC
1 ACACGGCCTAGC
32525799 ACA
1 ACA
32525802 AGGGCGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:32532412 original size:24 final size:24
Alignment explanation
Indices: 32532360--32532525 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
32532350 GTTTTATCAT
*
32532360 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
32532385 ATAAGTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
32532409 ATAACTGGGGTATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
32532432 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32532456 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
32532480 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32532503 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32532526 TCACTTCCTC
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
23 42 0.34
24 72 0.58
25 11 0.09
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32532465 original size:71 final size:71
Alignment explanation
Indices: 32532360--32532525 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
32532350 GTTTTATCAT
* * * *
32532360 ATAACTGGAGGCCT-AGCCTCTTTTAATAAGTGGGGCAAAAGCCCTTTTTATAACTGGGGTATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
32532424 GCCCTTTA
64 GCCCTTTA
* * *
32532432 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
32532497 CCTTTA
66 CCTTTA
32532503 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32532526 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 74 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:32532525 original size:47 final size:48
Alignment explanation
Indices: 32532360--32532525 Score: 221
Period size: 47 Copynumber: 3.5 Consensus size: 48
32532350 GTTTTATCAT
* * * *
32532360 ATAACTGGAGGCCT-AGCCTCTTTTAATAAGTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* * *
32532409 ATAACTGGGGTATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
32532456 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
32532503 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32532526 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 68 0.65
48 25 0.24
49 12 0.11
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:32533907 original size:27 final size:26
Alignment explanation
Indices: 32533848--32533921 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
32533838 CATATTCGTA
32533848 ATTTTACCATACAGGGGTATTAGGTC
1 ATTTTACCATACAGGGGTATTAGGTC
* *
32533874 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAGGGG-TATTA-GGTC
* *
32533901 TTTTTACC-TATTAGGGGTATT
1 ATTTTACCATA-CAGGGGTATT
32533922 TTAGTCATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 21 0.54
27 18 0.46
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (26 bp):
ATTTTACCATACAGGGGTATTAGGTC
Found at i:32539665 original size:27 final size:27
Alignment explanation
Indices: 32539625--32539692 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
32539615 TTACCTAGAC
*
32539625 CCCTTATGTTGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
*
32539652 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* * *
32539679 TCGTTATATGGTAA
1 CCCTTATGTGGTAA
32539693 GGTGACTGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTTTG
Found at i:32539698 original size:27 final size:27
Alignment explanation
Indices: 32539625--32539704 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
32539615 TTACCTAGAC
* * *
32539625 CCCTTATGTTGTAAAATGACTATTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
*
32539652 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
* * **
32539679 TCGTTATATGGTAAGGTGACTGTTTT
1 CCCTTATATGGTAAAATGACTGTTTT
32539705 TCCCGATGTG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.12, G:0.21, T:0.44
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTGTTTTG
Found at i:32545850 original size:50 final size:50
Alignment explanation
Indices: 32545780--32545920 Score: 185
Period size: 50 Copynumber: 2.8 Consensus size: 50
32545770 CACATAATAA
* * * * *
32545780 GATGTCAATGTCATATCCCAGATATGGTCTTACAT-AGATTCACACATATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGA-TCACAAATATC
* *
32545830 GATGCCAATGCCATGGCCCAGACATGGTCTTACATGGGATCACAAATATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATCACAAATATC
* *
32545880 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATC
32545921 TCATATTGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 79 0.98
51 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATCACAAATATC
Found at i:32553093 original size:47 final size:47
Alignment explanation
Indices: 32553024--32553179 Score: 192
Period size: 47 Copynumber: 3.3 Consensus size: 47
32553014 AGCTTAAGAT
32553024 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
32553071 CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGAGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
32553118 CGAATGGTTAATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
32553163 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
32553180 AAAGTGTGCA
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
45 21 0.23
46 6 0.07
47 65 0.71
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:32553304 original size:39 final size:40
Alignment explanation
Indices: 32553250--32553334 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
32553240 AAATGAATTG
* * * *
32553250 TGCTGAGATTGTATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
*
32553289 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
32553329 TGCTGG
1 TGCTGG
32553335 TGAATTAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 18 0.45
40 22 0.55
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (40 bp):
TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:32555947 original size:40 final size:40
Alignment explanation
Indices: 32555885--32556062 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
32555875 AAGCCAAGTA
* * * * *
32555885 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
32555924 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32555964 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
32556004 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
32556044 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32556063 TTATCATCTA
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 13 0.10
40 112 0.90
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32559167 original size:51 final size:51
Alignment explanation
Indices: 32559112--32559212 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
32559102 AGAAAGAGAG
* *
32559112 AATTTCAAGTCGGTAATAAGGTGTTCTTAAAAGTATCACCTTGGAAGAAAT
1 AATTTCAAGTCGGTAATAAGATATTCTTAAAAGTATCACCTTGGAAGAAAT
* *
32559163 AATTTCAAGTTGGTGATAAGATATTCTTAAAAGTATCACCTTGGAAGAAA
1 AATTTCAAGTCGGTAATAAGATATTCTTAAAAGTATCACCTTGGAAGAAA
32559213 ATTCTCCAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (51 bp):
AATTTCAAGTCGGTAATAAGATATTCTTAAAAGTATCACCTTGGAAGAAAT
Found at i:32561003 original size:24 final size:24
Alignment explanation
Indices: 32560940--32561011 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
32560930 TTGTTACATT
* *
32560940 GCTCTTAGTGAGCTTCTCGA-TATG
1 GCTCTTA-TGAGCTTCCCGATTATA
* * *
32560964 GTTCTTTGTGAACTTCCCGATTATA
1 GCTC-TTATGAGCTTCCCGATTATA
32560989 GCTCTTATGAGCTTCCC-ATTATA
1 GCTCTTATGAGCTTCCCGATTATA
32561012 TAGCCTGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
23 6 0.16
24 24 0.63
25 8 0.21
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.40
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCCGATTATA
Found at i:32563218 original size:37 final size:37
Alignment explanation
Indices: 32563175--32563415 Score: 187
Period size: 37 Copynumber: 6.6 Consensus size: 37
32563165 TAGTCAATGC
*
32563175 CAACCTTTAAAAAAGGTTGAGATAAACCTGTTTAAGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
* **
32563212 CAACCTTTAAAAAAGGTT-AGGATAGA-CTCGTCTAAAA
1 CAACCTTTAAAAAAGGTTGA-GATAAACCT-GTCTAAGG
*
32563249 CAA-CTTT-AAAAAGGTTG-GCATATACCTTGTCTAAGG
1 CAACCTTTAAAAAAGGTTGAG-ATAAACC-TGTCTAAGG
* * * *
32563285 AAACCTTTAAAAAAGGTTAAGATAAAGCTGTCTATGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
* * * * **
32563322 C-ACC-TT-AAAAGGGTTGGGATAGACCTCATCTAAAA
1 CAACCTTTAAAAAAGGTTGAGATAAACCT-GTCTAAGG
* * * *
32563357 CAACCTTTAAAATATGTTGAGATAGACCTATCTAAGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
*
32563394 CAACC-TT-AAAAAGGTTGGGATA
1 CAACCTTTAAAAAAGGTTGAGATA
32563416 GATATTGTTT
Statistics
Matches: 160, Mismatches: 31, Indels: 28
0.73 0.14 0.13
Matches are distributed among these distances:
34 16 0.10
35 32 0.20
36 24 0.15
37 57 0.36
38 30 0.19
39 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (37 bp):
CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
Done.