Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 94 of 235
Found at i:32563318 original size:73 final size:73
Alignment explanation
Indices: 32563179--32563318 Score: 187
Period size: 73 Copynumber: 1.9 Consensus size: 73
32563169 CAATGCCAAC
* * * *
32563179 CTTTAAAAAAGGTTGAGATAAACCTGTTTAAGGCAACCTTTAAAAAAGGTTAGGATAGACTCGTC
1 CTTTAAAAAAGGTTGAGATAAACCTGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAACTCGTC
32563244 TAAAACAA
66 TAAAACAA
*
32563252 CTTT-AAAAAGGTTG-GCATATACCTTGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAAGCT-
1 CTTTAAAAAAGGTTGAG-ATAAACC-TGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAA-CTC
32563314 GTCTA
63 GTCTA
32563319 TGGCACCTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
71 1 0.02
72 16 0.27
73 40 0.68
74 2 0.03
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (73 bp):
CTTTAAAAAAGGTTGAGATAAACCTGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAACTCGTC
TAAAACAA
Found at i:32563417 original size:73 final size:73
Alignment explanation
Indices: 32563213--32563417 Score: 200
Period size: 72 Copynumber: 2.8 Consensus size: 73
32563203 TGTTTAAGGC
* * * ** * * * *
32563213 AACCTTTAAAAAAGGTTAGGATAGA-CTCGTCTAAAACAACTTTAAAAAGGTTGGCATATACCTT
1 AACCTTTAAAAAAGGTTAAGATAAACCT-ATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTC
* *
32563277 GTCTAAGGA
65 ATCTAAGAA
* * * *
32563286 AACCTTTAAAAAAGGTTAAGATAAAGCTGTCTATGGC-ACCTTAAAAGGGTTGGGATAGACCTCA
1 AACCTTTAAAAAAGGTTAAGATAAACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTCA
32563350 TCTAA-AA
66 TCTAAGAA
* * * *
32563357 CAACCTTTAAAATATGTTGAGATAGACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGA
1 -AACCTTTAAAAAAGGTTAAGATAAACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGA
32563418 TATTGTTTAA
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
71 1 0.01
72 56 0.51
73 50 0.46
74 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (73 bp):
AACCTTTAAAAAAGGTTAAGATAAACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTCA
TCTAAGAA
Found at i:32563490 original size:35 final size:36
Alignment explanation
Indices: 32563444--32563520 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 36
32563434 CCTTAAAAAA
* *
32563444 GTCTACGGCAACCTTAAAAAGGTTGGGATAGA-CTC
1 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
*
32563479 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTT
1 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
32563515 GTCTAA
1 GTCTAA
32563521 AGGTCGGGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 30 0.79
36 8 0.21
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (36 bp):
GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
Found at i:32563523 original size:58 final size:58
Alignment explanation
Indices: 32563461--32563578 Score: 184
Period size: 58 Copynumber: 2.0 Consensus size: 58
32563451 GCAACCTTAA
* * * *
32563461 AAAGGTTGGGATAGACTCGTCTAAGGCAACCTTAAAAAGGTT-GCGATAGACCTTGTCT
1 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAG-GATAGACCTTGTCT
32563519 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
1 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
32563577 AA
1 AA
32563579 GGCAACCTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
58 54 0.98
59 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (58 bp):
AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
Found at i:32563543 original size:22 final size:23
Alignment explanation
Indices: 32563496--32563544 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
32563486 GCAACCTTAA
* *
32563496 AAAGGTTGCGATAGACCTTGTCT
1 AAAGGTCGCGATAGACCTCGTCT
*
32563519 AAAGGTCGGGATAGACC-CGTCT
1 AAAGGTCGCGATAGACCTCGTCT
32563541 AAAG
1 AAAG
32563545 CAACCCTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (23 bp):
AAAGGTCGCGATAGACCTCGTCT
Found at i:32563566 original size:35 final size:35
Alignment explanation
Indices: 32563519--32563756 Score: 167
Period size: 35 Copynumber: 6.7 Consensus size: 35
32563509 GACCTTGTCT
* *
32563519 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
* * *
32563554 AAAGGTTAGGATAGACCTTGTCTAAGGCAACCTTTAA
1 AAAGGTTGGGATAGACC-CGTCTAAAGCAACC-TTAA
** ** *
32563591 AAAGGTTAAGATAGAGTCTTCTAATA-CAACCTTAA
1 AAAGGTTGGGATAGACCCGTCTAA-AGCAACCTTAA
* * *
32563626 AAAGTTTGGGATATACCTTGTCT-AAGACAACCTTTAA
1 AAAGGTTGGGATAGACC-CGTCTAAAG-CAACC-TTAA
* * * *
32563663 AAAGGTTGGGATAGACCCGTTTAAGGCAATCTTTA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
* * * *
32563698 AAAGGTTGGGATAAACCCAT-TTAAGACAATCTTAA
1 AAAGGTTGGGATAGACCCGTCTAAAG-CAACCTTAA
* * * *
32563733 AAGGGTTGGAATAAACACGTCTAA
1 AAAGGTTGGGATAGACCCGTCTAA
32563757 GGAAGTTTTT
Statistics
Matches: 157, Mismatches: 36, Indels: 19
0.74 0.17 0.09
Matches are distributed among these distances:
34 4 0.03
35 76 0.48
36 39 0.25
37 38 0.24
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (35 bp):
AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
Found at i:32563584 original size:36 final size:36
Alignment explanation
Indices: 32563519--32563710 Score: 176
Period size: 35 Copynumber: 5.4 Consensus size: 36
32563509 GACCTTGTCT
* * * *
32563519 AAAGGTCGGGATAGACC-CGTCTAAAGCAACCCTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
*
32563554 AAAGGTTAGGATAGACCTTGTCTAAGGCAACCTTTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TTAA
** * **
32563591 AAAGGTTAAGATAGA-GTCT-TCTAATACAACCTTAA
1 AAAGGTTGGGATAGACCT-TGTCTAAGGCAACCTTAA
* * *
32563626 AAAGTTTGGGATATACCTTGTCTAAGACAACCTTTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TTAA
* * * *
32563663 AAAGGTTGGGATAGACC-CGTTTAAGGCAATCTTTA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
32563698 AAAGGTTGGGATA
1 AAAGGTTGGGATA
32563711 AACCCATTTA
Statistics
Matches: 129, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
35 47 0.36
36 45 0.35
37 37 0.29
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (36 bp):
AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
Found at i:32563604 original size:37 final size:37
Alignment explanation
Indices: 32563527--32563710 Score: 166
Period size: 36 Copynumber: 5.1 Consensus size: 37
32563517 CTAAAGGTCG
* * *
32563527 GGATAGACC-CGTCTAAAGCAACC-CTAAAAAGGTTA
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
32563562 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
* * ** * *
32563599 AGATAGA-GTCT-TCTAATACAACC-TTAAAAAGTTTG
1 GGATAGACCT-TGTCTAAGGCAACCTTTAAAAAGGTTA
* * *
32563634 GGATATACCTTGTCTAAGACAACCTTTAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
* * * *
32563671 GGATAGACC-CGTTTAAGGCAATCTTT-AAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
32563706 GGATA
1 GGATA
32563711 AACCCATTTA
Statistics
Matches: 124, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
35 39 0.31
36 48 0.39
37 37 0.30
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (37 bp):
GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
Found at i:32563676 original size:72 final size:72
Alignment explanation
Indices: 32563519--32563710 Score: 215
Period size: 72 Copynumber: 2.7 Consensus size: 72
32563509 GACCTTGTCT
* *
32563519 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGGCAA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACAA
32563584 CCTTTAA
66 CCTTTAA
** ** * * * * *
32563591 AAAGGTTAAGATAGAGTCTTCTAATA-CAACCTTAAAAAGTTTGGGATATACCTTGTCTAAGACA
1 AAAGGTTGGGATAGACCCGTCTAA-AGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACA
32563655 ACCTTTAA
65 ACCTTTAA
* * * * * *
32563663 AAAGGTTGGGATAGACCCGTTTAAGGCAATCTTTAAAAGGTTGGGATA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATA
32563711 AACCCATTTA
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
72 96 0.99
73 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (72 bp):
AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACAA
CCTTTAA
Found at i:32564671 original size:16 final size:16
Alignment explanation
Indices: 32564650--32564685 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32564640 AGGTGAAATC
* *
32564650 AATAAACTGTTATAAA
1 AATAAAATGTTAAAAA
32564666 AATAAAATGTTAAAAA
1 AATAAAATGTTAAAAA
32564682 AATA
1 AATA
32564686 TTGTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGTTAAAAA
Found at i:32570172 original size:129 final size:129
Alignment explanation
Indices: 32569940--32570203 Score: 368
Period size: 129 Copynumber: 2.0 Consensus size: 129
32569930 GTGTCGGCAT
* ** * *
32569940 AGTGTTGGACAAAGCTGACTCTTATTTAAGTGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
1 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
* * * * *
32570005 AAATGATTGGCCAAAGCGTATATCGGCAAGTCTATCCCAACACTTAGGGAAGTGTCGGCCCAAA
66 AAAAGATTGGCCAAAGCATATATCGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
* *
32570069 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCTTTATAC
1 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
* * * *
32570134 AAAA-AGTTGGCCAAAGCATATGTCGGCAAGTGTTTCCCAACATTTAAGAAAGTGTCGCCCCAAA
66 AAAAGA-TTGGCCAAAGCATATATCGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
32570198 AGTGTC
1 AGTGTC
32570204 TGTCCTAAGA
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
128 1 0.01
129 117 0.99
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (129 bp):
AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
AAAAGATTGGCCAAAGCATATATCGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
Found at i:32573069 original size:40 final size:40
Alignment explanation
Indices: 32572886--32573068 Score: 294
Period size: 40 Copynumber: 4.6 Consensus size: 40
32572876 CGGATGATAA
*
32572886 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
32572926 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
32572966 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
32573006 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
32573046 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
32573069 GAGCGAATAG
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 135 1.00
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:32589030 original size:50 final size:49
Alignment explanation
Indices: 32588869--32589093 Score: 299
Period size: 49 Copynumber: 4.5 Consensus size: 49
32588859 CTAGTACGCA
* * * *
32588869 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
32588918 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
* ** *
32588967 TAGTAGCCTGCACTTAGTACGACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * *
32589017 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCTG-GTACACG
32589068 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32589094 TGCGACCTCA
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
49 77 0.49
50 44 0.28
51 34 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:32589039 original size:99 final size:100
Alignment explanation
Indices: 32588856--32589100 Score: 316
Period size: 99 Copynumber: 2.5 Consensus size: 100
32588846 TAGCCAAAGC
* * * * ** *
32588856 TATCTAGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
32588921 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * *
32588954 TATCTG-GTACACGTAGTAGCCTGCACTTAGTACGACACACGTGACCTAACCATCTGATACACGT
1 TATC-GAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGT
*
32589018 AGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
64 AGTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * *
32589055 TTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
32589101 TCACAATAGA
Statistics
Matches: 124, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
98 38 0.31
99 43 0.35
100 2 0.02
101 41 0.33
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:32591288 original size:15 final size:15
Alignment explanation
Indices: 32591232--32591296 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
32591222 TAAAAATAAC
*
32591232 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
32591246 AAAAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
32591261 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
32591276 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
32591291 AAGAAA
1 AAGAAA
32591297 CCCAAGATAC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 10 0.24
15 29 0.69
16 3 0.07
ACGTcount: A:0.65, C:0.14, G:0.12, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32591298 original size:30 final size:31
Alignment explanation
Indices: 32591232--32591300 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
32591222 TAAAAATAAC
*
32591232 AAGAAAACC-GAATAAAAAAATCCAAGATAG
1 AAGAAACCCAGAATAAAAAAATCCAAGATAG
*
32591262 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAAAAATCCAAG-ATAG
32591291 AAGAAACCCA
1 AAGAAACCCA
32591301 AGATACGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.62, C:0.17, G:0.12, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAAAAATCCAAGATAG
Found at i:32594620 original size:49 final size:50
Alignment explanation
Indices: 32594503--32594644 Score: 178
Period size: 49 Copynumber: 2.9 Consensus size: 50
32594493 AGAAACACCA
* * * * *
32594503 TTTGTGGATAAGCCACCACTGGTTTGCAGATAAACTACCACTAATAACAC
1 TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTGATAACAC
** * * * *
32594553 TTTGTGGACAAGTGACCACTGATATGTAGATATACTGCCACTGAT-ATAT
1 TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTGATAACAC
32594602 TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTG
1 TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTG
32594645 CTTCCACCTT
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
49 41 0.53
50 36 0.47
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (50 bp):
TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTGATAACAC
Found at i:32596525 original size:25 final size:25
Alignment explanation
Indices: 32596491--32596544 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
32596481 TACATACCAG
32596491 AGGAAGACCTAA-GGGGGAGACGCAA
1 AGGAAGACCTAATGGGGG-GACGCAA
*
32596516 AGGAAGACCTAATGGGGGGACGCAG
1 AGGAAGACCTAATGGGGGGACGCAA
32596541 AGGA
1 AGGA
32596545 GAGCACATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.37, C:0.15, G:0.43, T:0.06
Consensus pattern (25 bp):
AGGAAGACCTAATGGGGGGACGCAA
Found at i:32599575 original size:13 final size:13
Alignment explanation
Indices: 32599557--32599585 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32599547 TGGCAATCAC
32599557 GTCACACGGGCGT
1 GTCACACGGGCGT
32599570 GTCACACGGGCGT
1 GTCACACGGGCGT
32599583 GTC
1 GTC
32599586 CCTGCTAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.31, G:0.38, T:0.17
Consensus pattern (13 bp):
GTCACACGGGCGT
Found at i:32603230 original size:20 final size:19
Alignment explanation
Indices: 32603205--32603275 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 19
32603195 CCCCATTTTC
32603205 TTTATTTTATTTAATTATTA
1 TTTATTTTATTT-ATTATTA
32603225 TTTATTGCCTTAATTCT-TTATTA
1 TTTATT---TT-ATT-TATTATTA
*
32603248 TTTATTTTCTATTATTATTA
1 TTTATTTTAT-TTATTATTA
32603268 TTTATTTT
1 TTTATTTT
32603276 TTCCTTTATA
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
19 2 0.05
20 23 0.53
23 14 0.33
24 3 0.07
25 1 0.02
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (19 bp):
TTTATTTTATTTATTATTA
Found at i:32604885 original size:27 final size:28
Alignment explanation
Indices: 32604847--32604921 Score: 109
Period size: 27 Copynumber: 2.7 Consensus size: 28
32604837 ATTGAGTCCA
32604847 TTTATCTTTATGTTTATTTTT-TGTTTT-
1 TTTATCTTTATGTTTATTTTTAT-TTTTC
32604874 TTTATCTTTATGTTTATTTTTATTTTTC
1 TTTATCTTTATGTTTATTTTTATTTTTC
* *
32604902 TTTCTTTTTATGTTTATTTT
1 TTTATCTTTATGTTTATTTT
32604922 GTTTTCCTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.77
Consensus pattern (28 bp):
TTTATCTTTATGTTTATTTTTATTTTTC
Found at i:32604926 original size:27 final size:26
Alignment explanation
Indices: 32604847--32604927 Score: 99
Period size: 28 Copynumber: 3.0 Consensus size: 26
32604837 ATTGAGTCCA
*
32604847 TTTATCTTTATGTTTATTTTTTGTTTT
1 TTTATCTTTATGTTTATTTTTT-TTTC
32604874 TTTATCTTTATGTTTATTTTTATTTTTC
1 TTTATCTTTATGTTTA-TTTT-TTTTTC
* * *
32604902 TTTCTTTTTATGTTTATTTTGTTTTC
1 TTTATCTTTATGTTTATTTTTTTTTC
32604928 CTATTTTGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.10
27 20 0.42
28 21 0.44
29 2 0.04
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (26 bp):
TTTATCTTTATGTTTATTTTTTTTTC
Found at i:32604927 original size:22 final size:22
Alignment explanation
Indices: 32604863--32604921 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
32604853 TTTATGTTTA
*
32604863 TTTTT-TGTTT-TTTTATCTTTA
1 TTTTTATGTTTATTTT-TCTTTC
* *
32604884 TGTTTATTTTTATTTTTCTTTC
1 TTTTTATGTTTATTTTTCTTTC
32604906 TTTTTATGTTTATTTT
1 TTTTTATGTTTATTTT
32604922 GTTTTCCTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 4 0.13
22 23 0.74
23 4 0.13
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.80
Consensus pattern (22 bp):
TTTTTATGTTTATTTTTCTTTC
Found at i:32609694 original size:16 final size:17
Alignment explanation
Indices: 32609659--32609691 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32609649 GTTTTTGAGA
32609659 AAATGATTAAATTGATT
1 AAATGATTAAATTGATT
32609676 AAAT-ATTAGAATTGAT
1 AAATGATTA-AATTGAT
32609692 AAAGGGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
AAATGATTAAATTGATT
Found at i:32611681 original size:27 final size:27
Alignment explanation
Indices: 32611650--32611704 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32611640 ACCCTCTAAT
*
32611650 TGATAAAATGACTGTTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
* *
32611677 TGATAAAATGATTATTTTGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
32611704 T
1 T
32611705 AATGTATGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTATG
Found at i:32615455 original size:27 final size:27
Alignment explanation
Indices: 32615424--32615481 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
32615414 ACCCTCTAAT
*
32615424 TGATAAAATGATTGTTATGCCCCTATG
1 TGATAAAATGACTGTTATGCCCCTATG
* * *
32615451 TGATAAAATGACTGTTTTGTCCTTATG
1 TGATAAAATGACTGTTATGCCCCTATG
32615478 TGAT
1 TGAT
32615482 GTATGATTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (27 bp):
TGATAAAATGACTGTTATGCCCCTATG
Found at i:32617379 original size:46 final size:46
Alignment explanation
Indices: 32617212--32617387 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
32617202 TGTAACCCGC
* * *
32617212 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
32617258 CCATAAGTGAACTCATACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** ** *
32617304 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
32617351 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
32617388 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 68 0.65
47 29 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:32619449 original size:40 final size:40
Alignment explanation
Indices: 32619404--32619492 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
32619394 TTTGCAGCCA
*
32619404 GTGCCCCTGTAAACACTTCAATGTCCCTATTTGCACAATT-
1 GTGCCCCTGTAAACACTTCAATGTCCCTATTAGCA-AATTC
* * *
32619444 GTGCCCCTGTAAACACTTCAGTGTCCTTATTAGCATATTC
1 GTGCCCCTGTAAACACTTCAATGTCCCTATTAGCAAATTC
32619484 GTGCCCCTG
1 GTGCCCCTG
32619493 ACTGCACTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.07
40 41 0.93
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (40 bp):
GTGCCCCTGTAAACACTTCAATGTCCCTATTAGCAAATTC
Found at i:32633624 original size:7 final size:7
Alignment explanation
Indices: 32633612--32633638 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32633602 CACATTTCTA
32633612 CTCATCC
1 CTCATCC
32633619 CTCATCC
1 CTCATCC
32633626 CTCATCC
1 CTCATCC
32633633 CTCATC
1 CTCATC
32633639 ATTCATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30
Consensus pattern (7 bp):
CTCATCC
Found at i:32633644 original size:14 final size:14
Alignment explanation
Indices: 32633611--32633645 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32633601 TCACATTTCT
32633611 ACTCATCCCTCATC
1 ACTCATCCCTCATC
*
32633625 CCTCATCCCTCATC
1 ACTCATCCCTCATC
*
32633639 ATTCATC
1 ACTCATC
32633646 ATTCTCTCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.49, G:0.00, T:0.31
Consensus pattern (14 bp):
ACTCATCCCTCATC
Found at i:32640225 original size:11 final size:12
Alignment explanation
Indices: 32640205--32640229 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32640195 GAATATGATG
32640205 AAAACAAAAAAA
1 AAAACAAAAAAA
32640217 AAAACAAAAAAA
1 AAAACAAAAAAA
32640229 A
1 A
32640230 GTGTGTGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAA
Found at i:32641635 original size:39 final size:40
Alignment explanation
Indices: 32641538--32641718 Score: 185
Period size: 40 Copynumber: 4.5 Consensus size: 40
32641528 ATGATGTCCA
* * *
32641538 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
* *
32641578 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
*
32641618 GGCTAAG-CCCGAAGGCATTT-TCGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGT-GCGAGTTACTAATTCCG
* * *
32641657 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
*
32641697 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
32641719 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 34 0.29
40 72 0.61
41 11 0.09
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:32641740 original size:79 final size:79
Alignment explanation
Indices: 32641587--32641751 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
32641577 GGACTAAGAT
* * ***
32641587 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTTCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32641652 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32641666 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32641729 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32641745 CCGAAGG
1 CCGAAGG
32641752 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32646254 original size:40 final size:40
Alignment explanation
Indices: 32646199--32646278 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
32646189 GTATTTTCGG
32646199 ATCACAAAAGTCTCAAATATTTGATGACTCAAAGAGACTT
1 ATCACAAAAGTCTCAAATATTTGATGACTCAAAGAGACTT
*
32646239 ATCACAAAAGTCTCAAATATTTGATGACTCAACGAGACTT
1 ATCACAAAAGTCTCAAATATTTGATGACTCAAAGAGACTT
32646279 GAATCTGCGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (40 bp):
ATCACAAAAGTCTCAAATATTTGATGACTCAAAGAGACTT
Found at i:32646718 original size:45 final size:45
Alignment explanation
Indices: 32646667--32646756 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
32646657 TAGCCGAATG
* *
32646667 TCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGT
1 TCAATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGT
32646712 TCAATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGT
1 TCAATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGT
32646757 CGGTTTTGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (45 bp):
TCAATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGT
Found at i:32647930 original size:30 final size:30
Alignment explanation
Indices: 32647885--32647944 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32647875 ATTTAGTACG
*
32647885 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
32647915 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
32647945 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:32648315 original size:40 final size:40
Alignment explanation
Indices: 32648260--32648335 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
32648250 TTCAAAAAAC
32648260 GTAAAGAACATTAAAAACGGGGCTTGGAATCACTTAATAT
1 GTAAAGAACATTAAAAACGGGGCTTGGAATCACTTAATAT
* *
32648300 GTAAAGAACATTAAAAATGGGGCTTTGAATCACTTA
1 GTAAAGAACATTAAAAACGGGGCTTGGAATCACTTA
32648336 CTATAGAGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (40 bp):
GTAAAGAACATTAAAAACGGGGCTTGGAATCACTTAATAT
Found at i:32653252 original size:21 final size:21
Alignment explanation
Indices: 32653228--32653269 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32653218 TCATCAGATC
*
32653228 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
32653249 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
32653270 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:32655686 original size:175 final size:175
Alignment explanation
Indices: 32655395--32655744 Score: 691
Period size: 175 Copynumber: 2.0 Consensus size: 175
32655385 TTAAGCCCTT
*
32655395 TTACTCATTTTCGCTTAAAACCGAGTAGTACAAGTTGTCTAACATAATTTAAAACCTCATATTCT
1 TTACTCATTCTCGCTTAAAACCGAGTAGTACAAGTTGTCTAACATAATTTAAAACCTCATATTCT
32655460 ATCATAAAACACCAAGATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTT
66 ATCATAAAACACCAAGATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTT
32655525 GAATTATTGCTAGCATAAGCGTAATCGAGCCACCGGGATTCCAAA
131 GAATTATTGCTAGCATAAGCGTAATCGAGCCACCGGGATTCCAAA
32655570 TTACTCATTCTCGCTTAAAACCGAGTAGTACAAGTTGTCTAACATAATTTAAAACCTCATATTCT
1 TTACTCATTCTCGCTTAAAACCGAGTAGTACAAGTTGTCTAACATAATTTAAAACCTCATATTCT
32655635 ATCATAAAACACCAAGATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTT
66 ATCATAAAACACCAAGATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTT
32655700 GAATTATTGCTAGCATAAGCGTAATCGAGCCACCGGGATTCCAAA
131 GAATTATTGCTAGCATAAGCGTAATCGAGCCACCGGGATTCCAAA
32655745 AACGTAAAGA
Statistics
Matches: 174, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
175 174 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.30
Consensus pattern (175 bp):
TTACTCATTCTCGCTTAAAACCGAGTAGTACAAGTTGTCTAACATAATTTAAAACCTCATATTCT
ATCATAAAACACCAAGATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTT
GAATTATTGCTAGCATAAGCGTAATCGAGCCACCGGGATTCCAAA
Found at i:32664490 original size:25 final size:26
Alignment explanation
Indices: 32664462--32664515 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
32664452 TAATCGAAAG
*
32664462 TCGT-AAAATTGCAGTACGCGCGATT
1 TCGTCAAAACTGCAGTACGCGCGATT
*
32664487 TCGTGCAAAACTGCAGTACGCGTGATT
1 TCGT-CAAAACTGCAGTACGCGCGATT
32664514 TC
1 TC
32664516 ATGCGTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.16
27 21 0.84
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
TCGTCAAAACTGCAGTACGCGCGATT
Found at i:32664705 original size:28 final size:28
Alignment explanation
Indices: 32664665--32664729 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
32664655 ATGTACTAGA
*
32664665 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
32664693 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
32664721 ATACCCCTA
1 ATACCCCTA
32664730 GGGTAAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:32664876 original size:28 final size:29
Alignment explanation
Indices: 32664835--32664897 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
32664825 AGGAAGCGTC
* *
32664835 CTGGTGGCTATGCCACAAATTATTTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
32664863 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
32664892 CTGGTG
1 CTGGTG
32664898 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 7 0.23
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:32664908 original size:29 final size:28
Alignment explanation
Indices: 32664845--32664908 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
32664835 CTGGTGGCTA
* * *
32664845 TGCCACAAATTATTTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
32664873 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
32664902 TGTCACA
1 TGCCACA
32664909 TTTTCTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:32674382 original size:38 final size:37
Alignment explanation
Indices: 32674309--32674387 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
32674299 TATTACGAAA
* *
32674309 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
32674346 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
32674384 TCTT
1 TCTT
32674388 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:32674584 original size:47 final size:47
Alignment explanation
Indices: 32674506--32674704 Score: 299
Period size: 47 Copynumber: 4.2 Consensus size: 47
32674496 CCCTTCGGGA
* * * * * *
32674506 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32674553 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32674600 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32674649 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32674696 CTTATCACA
1 CTTATCACA
32674705 ATTTAGAATT
Statistics
Matches: 138, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
47 92 0.67
49 46 0.33
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32674668 original size:96 final size:94
Alignment explanation
Indices: 32674506--32674709 Score: 309
Period size: 96 Copynumber: 2.1 Consensus size: 94
32674496 CCCTTCGGGA
* * * *
32674506 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
32674571 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAAGC
* * *
32674600 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
32674665 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAAGC
32674696 CTTATCACAATTTA
1 CTTATCAC-ATTTA
32674710 GAATTCACAT
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
94 10 0.10
95 3 0.03
96 84 0.85
97 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAAGC
Found at i:32681217 original size:13 final size:13
Alignment explanation
Indices: 32681199--32681224 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32681189 CACATTGGTG
32681199 TACACGGCCATGT
1 TACACGGCCATGT
32681212 TACACGGCCATGT
1 TACACGGCCATGT
32681225 CGATCTTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
TACACGGCCATGT
Found at i:32691408 original size:61 final size:61
Alignment explanation
Indices: 32691333--32691450 Score: 227
Period size: 61 Copynumber: 1.9 Consensus size: 61
32691323 ATCATAAGAC
32691333 TAGTCTCATAGATTGCTCTCATATGCATCACATAACTACCTTATGATTTAGTTCAAAGGAA
1 TAGTCTCATAGATTGCTCTCATATGCATCACATAACTACCTTATGATTTAGTTCAAAGGAA
*
32691394 TAGTCTCATAGATTGCTCTCGTATGCATCACATAACTACCTTATGATTTAGTTCAAA
1 TAGTCTCATAGATTGCTCTCATATGCATCACATAACTACCTTATGATTTAGTTCAAA
32691451 TCAAGCTCAC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (61 bp):
TAGTCTCATAGATTGCTCTCATATGCATCACATAACTACCTTATGATTTAGTTCAAAGGAA
Found at i:32691645 original size:37 final size:37
Alignment explanation
Indices: 32691588--32691694 Score: 160
Period size: 37 Copynumber: 2.9 Consensus size: 37
32691578 CTCAGATGAG
* * *
32691588 ATCTCCAAACGAAGTTATCGGGTCTTACCCGGACAAA
1 ATCTCCACACGCAGTCATCGGGTCTTACCCGGACAAA
* *
32691625 ATCTCTACACGCAGTCATCGGGTCTTACCCGGACATA
1 ATCTCCACACGCAGTCATCGGGTCTTACCCGGACAAA
*
32691662 ATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 ATCTCCACACGCAGTCATCGGGTCTTACCCGGA
32691695 ATATATTTCC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
ATCTCCACACGCAGTCATCGGGTCTTACCCGGACAAA
Found at i:32692002 original size:11 final size:11
Alignment explanation
Indices: 32691978--32692021 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
32691968 ACCACATATG
*
32691978 CATATCTCATA
1 CATATCTCACA
*
32691989 CATATTTCACA
1 CATATCTCACA
*
32692000 CATATCTCATA
1 CATATCTCACA
*
32692011 CATATTTCACA
1 CATATCTCACA
32692022 TTAGCCATTC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (11 bp):
CATATCTCACA
Found at i:32692002 original size:50 final size:48
Alignment explanation
Indices: 32691841--32692000 Score: 241
Period size: 48 Copynumber: 3.3 Consensus size: 48
32691831 ACACATCGCC
*
32691841 TACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
32691889 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
32691939 TATATATTTCACA-TTGACCATTCGGCCTTACCACATATGCATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
32691987 TACATATTTCACAC
1 TACATATTTCACAC
32692001 ATATCTCATA
Statistics
Matches: 102, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
48 59 0.58
49 2 0.02
50 41 0.40
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:32692006 original size:22 final size:22
Alignment explanation
Indices: 32691978--32692021 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
32691968 ACCACATATG
32691978 CATATCTCATACATATTTCACA
1 CATATCTCATACATATTTCACA
32692000 CATATCTCATACATATTTCACA
1 CATATCTCATACATATTTCACA
32692022 TTAGCCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (22 bp):
CATATCTCATACATATTTCACA
Found at i:32692022 original size:98 final size:97
Alignment explanation
Indices: 32691844--32692022 Score: 227
Period size: 98 Copynumber: 1.8 Consensus size: 97
32691834 CATCGCCTAC
* *
32691844 ATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCATACATATTTCACACTAGCCA
* * *
32691909 TTCGGCTTTACCACATATACATATCTCATATAT
66 TACAGATTTA-CACATATACATATCTCATATAT
* * *
32691942 ATATTTCACA-TTGACCATTCGGCCTTACCACATATGCATATCTCATACATATTTCACACATATC
1 ATATTTCACACTAG-CCATTCGGCCTTACCACATATACATATCTCATACATATTTCACAC-TAGC
*
32692006 TCATACATATTT-CACAT
64 -CATACAGATTTACACAT
32692023 TAGCCATTCG
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
97 2 0.03
98 57 0.83
99 3 0.04
100 7 0.10
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (97 bp):
ATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCATACATATTTCACACTAGCCA
TACAGATTTACACATATACATATCTCATATAT
Found at i:32692023 original size:70 final size:70
Alignment explanation
Indices: 32691927--32692285 Score: 286
Period size: 70 Copynumber: 4.9 Consensus size: 70
32691917 TACCACATAT
* * *
32691927 ACATATCTCATATATATATTTCACATT-GACCATTCGGCCTTACCACATATGCATATCTCATACA
1 ACATATCTC--ATACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACA
32691991 TATTTCAC
63 TATTTCAC
* *
32691999 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCATATATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACAT
32692064 ATTTCAC
64 ATTTCAC
* * ** * * * * * * *
32692071 A-TTAAC-CACT-CAGCTTTACCACATATA--CATATC-TC-ATA-TATATATATATTTCGCATT
1 ACATATCTCA-TACATATTT--CACAT-TAGCCAT-TCGGCTTTACCACATATACATATCTCA-T
*
32692128 AGCCATTCGGCTTTACCAC
60 A--CA-T---ATTT--CAC
*
32692147 ATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATAC
1 ----ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
32692212 ATATTTCAC
62 ATATTTCAC
32692221 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
32692286 ATTTCACATT
Statistics
Matches: 226, Mismatches: 32, Indels: 60
0.71 0.10 0.19
Matches are distributed among these distances:
67 1 0.00
68 2 0.01
69 10 0.04
70 116 0.51
71 10 0.04
72 29 0.13
73 2 0.01
74 6 0.03
76 6 0.03
79 3 0.01
80 10 0.04
81 8 0.04
82 11 0.05
83 12 0.05
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (70 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
TTCAC
Found at i:32692033 original size:120 final size:120
Alignment explanation
Indices: 32691879--32692341 Score: 450
Period size: 120 Copynumber: 4.0 Consensus size: 120
32691869 TACCACATAT
*
32691879 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32691944 ATTTCACATTGACCATTCGGCCTTACCACATATGCATATCTCATACATATTTCAC
66 ATTTCACATTGACCATTCGGCCTTACCACATATACATATCTCATACATATTTCAC
*
32691999 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCATATATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * * *
32692064 ATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCAT--ATATAT-AT
66 ATTTCACATTGACCATTCGGCCTTACCACATATACATATCTCATACATATTTCAC
* * * * * * * * * * *
32692116 ATATTTCGCATTAGC-CA-TTCGGCTTTA-CCA--C--ATATA-CATATCT-CATA---CATATT
1 ACATATCTCA-TA-CATATTTC-ACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
* * * * ** **
32692169 TCACATTAGC-CATTCAGC-TT-TACC-AC----ATATACATATCTCATACATATTTCAC
63 T-ATATT-TCACATTGACCATTCGGCCTTACCACATATACATATCTCATACATATTTCAC
*
32692221 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32692286 ATTTCACATTGACCATTCGGCCTTACCACATATGCATATCTCATACATATTTCAC
66 ATTTCACATTGACCATTCGGCCTTACCACATATACATATCTCATACATATTTCAC
32692341 A
1 A
32692342 TTAGCCATTC
Statistics
Matches: 262, Mismatches: 53, Indels: 56
0.71 0.14 0.15
Matches are distributed among these distances:
102 15 0.06
103 1 0.00
104 12 0.05
105 14 0.05
107 2 0.01
108 7 0.03
109 13 0.05
110 6 0.02
111 8 0.03
112 6 0.02
113 13 0.05
114 7 0.03
115 3 0.01
117 14 0.05
118 12 0.05
119 1 0.00
120 128 0.49
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (120 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
ATTTCACATTGACCATTCGGCCTTACCACATATACATATCTCATACATATTTCAC
Found at i:32692051 original size:48 final size:48
Alignment explanation
Indices: 32691999--32692221 Score: 302
Period size: 48 Copynumber: 4.5 Consensus size: 48
32691989 CATATTTCAC
*
32691999 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATAT
* * * *
32692047 ACATACCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
1 ACATATCTC--ATACATATTTCACATTAGCCATTCAGCTTTACCACATAT
* * *
32692097 ACATATCTCATATATATATATATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTC------ATACATATTTCACATTAGCCATTCAGCTTTACCACATAT
32692151 ACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATAT
32692199 ACATATCTCATACATATTTCACA
1 ACATATCTCATACATATTTCACA
32692222 CATATCTCAT
Statistics
Matches: 156, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
48 67 0.43
50 43 0.28
54 46 0.29
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (48 bp):
ACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATAT
Found at i:32692213 original size:11 final size:11
Alignment explanation
Indices: 32692197--32692237 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
32692187 TTTACCACAT
32692197 ATACATATCTC
1 ATACATATCTC
*
32692208 ATACATATTTC
1 ATACATATCTC
*
32692219 ACACATATCTC
1 ATACATATCTC
32692230 ATACATAT
1 ATACATAT
32692238 TTCACATTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (11 bp):
ATACATATCTC
Found at i:32692227 original size:22 final size:22
Alignment explanation
Indices: 32692199--32692243 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32692189 TACCACATAT
32692199 ACATATCTCATACATATTTCAC
1 ACATATCTCATACATATTTCAC
32692221 ACATATCTCATACATATTTCAC
1 ACATATCTCATACATATTTCAC
32692243 A
1 A
32692244 TTAGCCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.36
Consensus pattern (22 bp):
ACATATCTCATACATATTTCAC
Found at i:32692244 original size:48 final size:47
Alignment explanation
Indices: 32692116--32692244 Score: 125
Period size: 48 Copynumber: 2.7 Consensus size: 47
32692106 ATATATATAT
* * * * *
32692116 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACAATAGCCATACAGATTTA-CACATATACATATCTCATAC
* * *
32692164 ATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATAC
1 ATATTTCACAATAGCCATACAGATTTA-CACATATACATATCTCATAC
* *
32692212 ATATTTCACACATATCTCATACATATTT-CACAT
1 ATATTTCACA-ATAGC-CATACAGATTTACACAT
32692245 TAGCCATTCG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
48 61 0.85
49 3 0.04
50 8 0.11
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (47 bp):
ATATTTCACAATAGCCATACAGATTTACACATATACATATCTCATAC
Found at i:32692302 original size:50 final size:50
Alignment explanation
Indices: 32692221--32692728 Score: 709
Period size: 50 Copynumber: 10.2 Consensus size: 50
32692211 CATATTTCAC
* * * *
32692221 ACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
* * * * *
32692269 ACATATCTCATACATATATTTCACATTGACCATTCGGCCTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
* * * * *
32692319 GCATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
32692367 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
32692417 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
32692467 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
32692517 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
* * ** * *
32692567 ACATATCTCAAAAATATATATTTCGCATTAGTCATTCGGCTTTACCACATAT
1 ACATATCTC--ATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
*
32692619 ACATACCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
1 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
* * ** * *
32692669 ACATATCTCAAAAATATATATTTCGCATTAGTCATTCGGCTTTACCACATAT
1 ACATATCTC--ATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
32692721 ACATATCT
1 ACATATCT
32692729 TATACATCAA
Statistics
Matches: 416, Mismatches: 36, Indels: 12
0.90 0.08 0.03
Matches are distributed among these distances:
48 51 0.12
50 279 0.67
52 86 0.21
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.36
Consensus pattern (50 bp):
ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATAT
Found at i:32692342 original size:118 final size:117
Alignment explanation
Indices: 32692116--32692342 Score: 368
Period size: 118 Copynumber: 1.9 Consensus size: 117
32692106 ATATATATAT
*
32692116 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
32692181 TTCAGCTTTACCACATATACATATCTCATACATATTTCACACATATCTCATAC
66 TTCAGCCTTACCACATATACATATCTCATACATATTT-ACACATATCTCATAC
32692234 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT-GA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC--ATATTTCACATTAG-
* *
32692298 CCATTCGGCCTTACCACATATGCATATCTCATACATATTT-CACAT
63 CCATTCAGCCTTACCACATATACATATCTCATACATATTTACACAT
32692343 TAGCCATTCG
Statistics
Matches: 102, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
118 52 0.51
119 1 0.01
120 49 0.48
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (117 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCAGCCTTACCACATATACATATCTCATACATATTTACACATATCTCATAC
Found at i:32692742 original size:102 final size:100
Alignment explanation
Indices: 32692221--32692743 Score: 716
Period size: 102 Copynumber: 5.2 Consensus size: 100
32692211 CATATTTCAC
* * * *
32692221 ACATATCTCATAC--ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ACATATCTCATACATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCATATAT
*
32692284 ATATTTCACATT-GACCATTCGGCCTTACCACATAT
66 ATATTTCACATTAG-CCATTCGGCTTTACCACATAT
* * * *
32692319 GCATATCTCATAC--ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ACATATCTCATACATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCATATAT
* * *
32692382 ATATTTCACATTAACCACTCAGCTTTACCACATAT
66 ATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
32692417 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCATATAT
1 ACATATCTCATACATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCATATAT
* * *
32692482 ATATTTCACATTAACCACTCAGCTTTACCACATAT
66 ATATTTCACATTAGCCATTCGGCTTTACCACATAT
* *
32692517 ACATATCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCAAAAAT
1 ACATATCTCATACATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTC--ATAT
* *
32692582 ATATATTTCGCATTAGTCATTCGGCTTTACCACATAT
64 ATATATTTCACATTAGCCATTCGGCTTTACCACATAT
* * *
32692619 ACATACCTCATATATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCAAAAAT
1 ACATATCTCATACATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTC--ATAT
* *
32692684 ATATATTTCGCATTAGTCATTCGGCTTTACCACATAT
64 ATATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
32692721 ACATATCTTATACATCA-ATTTCA
1 ACATATCTCATACAT-ATATTTCA
32692744 GCAATAGCTT
Statistics
Matches: 398, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
98 102 0.26
100 141 0.35
102 154 0.39
103 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.36
Consensus pattern (100 bp):
ACATATCTCATACATATATTTCACATTAACCACTCAGCTTTACCACATATACATATCTCATATAT
ATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:32696188 original size:40 final size:40
Alignment explanation
Indices: 32695041--32696187 Score: 1367
Period size: 40 Copynumber: 28.7 Consensus size: 40
32695031 CCAGCATGAT
* * * *
32695041 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32695081 TGCTCTTCGAGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32695121 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32695161 TGCTCTTCGAGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * *
32695201 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
** * * *
32695241 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * * * *
32695281 TGCTCCTCAGGACCTAGCCCGAATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32695321 TGCTCTTCGGGACTTAACCCTGATATAACTCTGGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * *
32695361 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32695401 TGCTCTTCGAGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * * *
32695441 TGCTCTTTGAGACTTACCCCGGATATAACACCAGAACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * **
32695481 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGGA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
*
32695521 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32695561 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * *
32695601 TGCTCTTCGGGACTTAGCCCAGATATAACACCAGTACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32695641 TGCTCTTCGGGACTCAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * *
32695681 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* *
32695721 TGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * *
32695761 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * *
32695801 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * *
32695841 TGCTCTTCGGGACTTATCCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * * *
32695881 TGCTTTTTGAGACTTAGCCCAGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * **
32695921 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGGA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* *
32695961 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* * * *
32696001 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* *
32696041 TGCTCTTCGGGACTTAGCCTGGATATAACACGAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* ** * *
32696081 TGCTCTTCGGGACTCAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
* *
32696121 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
*
32696161 TGCTCTTTGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
32696188 TATAACTCTC
Statistics
Matches: 947, Mismatches: 160, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 947 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACAAA
Found at i:32697500 original size:37 final size:37
Alignment explanation
Indices: 32697443--32697549 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
32697433 CTCAGATGAG
*
32697443 ATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAA
1 ATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAA
* *
32697480 ATCTCCACACGCAGTCATCGGGTCTTACCCGGACATA
1 ATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAA
*
32697517 ATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 ATCTCCACACGAAGTCATCGGGTCTTACCCGGA
32697550 ATATATTTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
ATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAA
Found at i:32697818 original size:98 final size:98
Alignment explanation
Indices: 32697703--32698184 Score: 700
Period size: 98 Copynumber: 4.9 Consensus size: 98
32697693 GCCTACATAC
* * *
32697703 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
1 TTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
*
32697768 GCTTTACCACATACACATATCTCATATATATAT
66 GCTTTACCACATATACATATCTCATATATATAT
* * *
32697801 TTCACATTGACCATTCGGCCTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
*
32697866 GCTTTACCACATATACATACCTCATATATATAT
66 GCTTTACCACATATACATATCTCATATATATAT
* * * * *
32697899 TTCACACTAACCATTCAGCTTTGCCACATATACATATCTCATATATATATTTCGCATTAGCCATT
1 TTCACATTAACCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATT
* *
32697964 CGGTTTTACCACATATACATATCTC--ATACATAT
64 CGGCTTTACCACATATACATATCTCATATATATAT
*
32697997 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA-TTCACATTAGCCATTCG
1 TTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
32698061 GCTTTACCACATATACATATCTCATATATATAT
66 GCTTTACCACATATACATATCTCATATATATAT
* * * * *
32698094 TTCACATTAACCATCCAGCTTTACCACATATACATATCTCAAAAATATATATTTCGCATTAGTCA
1 TTCACATTAACCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTAGCCA
32698159 TTCGGCTTTACCACATATACATATCT
62 TTCGGCTTTACCACATATACATATCT
32698185 TATACATCAA
Statistics
Matches: 342, Mismatches: 33, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
95 38 0.11
96 6 0.02
97 44 0.13
98 167 0.49
100 44 0.13
101 6 0.02
102 37 0.11
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (98 bp):
TTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATATATATAT
Found at i:32697825 original size:50 final size:49
Alignment explanation
Indices: 32697703--32698184 Score: 661
Period size: 50 Copynumber: 9.8 Consensus size: 49
32697693 GCCTACATAC
* *
32697703 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATAT
* *
32697751 TTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATAT
* * *
32697801 TTCACATT-GACCATTCGGCCTTACCACATATGCATATCTC-ATACATAT
1 TTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAATATATAT
*
32697849 TTCACATTAGCCATTCGGCTTTACCACATATACATACCTCATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATAT
* * * *
32697899 TTCACACTAACCATTCAGCTTTGCCACATATACATATCTCATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATAT
* * *
32697949 TTCGCATTAGCCATTCGGTTTTACCACATATACATATCTC-ATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATAT
*
32697997 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATA-
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATAT
32698044 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATAT
* * *
32698094 TTCACATTAACCATCCAGCTTTACCACATATACATATCTCAAAAATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTC---AATATATAT
* *
32698146 TTCGCATTAGTCATTCGGCTTTACCACATATACATATCT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCT
32698185 TATACATCAA
Statistics
Matches: 388, Mismatches: 34, Indels: 20
0.88 0.08 0.05
Matches are distributed among these distances:
47 40 0.10
48 133 0.34
49 8 0.02
50 164 0.42
52 42 0.11
53 1 0.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (49 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATAT
Found at i:32702266 original size:21 final size:21
Alignment explanation
Indices: 32702235--32702285 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
32702225 AATTGCACAC
*
32702235 GGCCATATGGGTCAATAGCCA
1 GGCCATGTGGGTCAATAGCCA
* *
32702256 GGCCGTGTGGGTCAATGGCCA
1 GGCCATGTGGGTCAATAGCCA
32702277 GGCCATGTG
1 GGCCATGTG
32702286 AATCGTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.37, T:0.20
Consensus pattern (21 bp):
GGCCATGTGGGTCAATAGCCA
Found at i:32718208 original size:25 final size:25
Alignment explanation
Indices: 32718179--32718275 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 25
32718169 TCCTGTGCAT
* *
32718179 GTATGCTCATATGAGCTGTGAATCG
1 GTATGCTCACACGAGCTGTGAATCG
* * *
32718204 GTATGCTGAAACGAGCTGTGAATCA
1 GTATGCTCACACGAGCTGTGAATCG
* * * *
32718229 TTATGCTCACAGGAGTTGTAAATCG
1 GTATGCTCACACGAGCTGTGAATCG
*
32718254 GTATGCTCACACGAGCTATGAA
1 GTATGCTCACACGAGCTGTGAA
32718276 AATGGGTCTG
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTGAATCG
Found at i:32718253 original size:50 final size:50
Alignment explanation
Indices: 32718180--32718275 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
32718170 CCTGTGCATG
* * * * *
32718180 TATGCTCATATGAGCTGTGAATCGGTATGCTGAAACGAGCTGTGAATCAT
1 TATGCTCACAGGAGCTGTAAATCGGTATGCTCAAACGAGCTATGAATCAT
* *
32718230 TATGCTCACAGGAGTTGTAAATCGGTATGCTCACACGAGCTATGAA
1 TATGCTCACAGGAGCTGTAAATCGGTATGCTCAAACGAGCTATGAA
32718276 AATGGGTCTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (50 bp):
TATGCTCACAGGAGCTGTAAATCGGTATGCTCAAACGAGCTATGAATCAT
Found at i:32718287 original size:27 final size:25
Alignment explanation
Indices: 32718230--32718289 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
32718220 TGTGAATCAT
* *
32718230 TATGCTCACAGGAGTTGTAAATCGG
1 TATGCTCACACGAGTTGAAAATCGG
*
32718255 TATGCTCACACGAGCTATGAAAATGGG
1 TATGCTCACACGAG-T-TGAAAATCGG
*
32718282 TCTGCTCA
1 TATGCTCA
32718290 TATGAGCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 13 0.45
26 1 0.03
27 15 0.52
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
TATGCTCACACGAGTTGAAAATCGG
Found at i:32719638 original size:19 final size:19
Alignment explanation
Indices: 32719614--32719650 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32719604 CCTCTCCCTC
32719614 CAAAAG-GATTTTTTGTCCT
1 CAAAAGAGA-TTTTTGTCCT
32719633 CAAAAGAGATTTTTGTCC
1 CAAAAGAGATTTTTGTCC
32719651 CTAAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (19 bp):
CAAAAGAGATTTTTGTCCT
Found at i:32725811 original size:20 final size:20
Alignment explanation
Indices: 32725774--32725811 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32725764 CTTGAAATTC
*
32725774 AAATTACTGATTATATGATT
1 AAATTACTGATTACATGATT
*
32725794 AAATTACTGTTTACATGA
1 AAATTACTGATTACATGA
32725812 ATGAAAGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (20 bp):
AAATTACTGATTACATGATT
Found at i:32726195 original size:22 final size:22
Alignment explanation
Indices: 32726170--32726226 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
32726160 CAGCTGGTAT
32726170 GAGCTTACTGTTCAACTCAATA
1 GAGCTTACTGTTCAACTCAATA
* *
32726192 GAGCCTACCAT-TTCAGCTCAATA
1 GAGCTTA-C-TGTTCAACTCAATA
32726215 GAGCTTACTGTT
1 GAGCTTACTGTT
32726227 TATTAGCTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 1 0.03
22 9 0.31
23 18 0.62
24 1 0.03
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (22 bp):
GAGCTTACTGTTCAACTCAATA
Found at i:32727212 original size:27 final size:27
Alignment explanation
Indices: 32727181--32727358 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32727171 TAAATTGTAC
32727181 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32727208 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32727234 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32727262 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32727290 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32727317 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32727344 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32727359 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32727295 original size:82 final size:81
Alignment explanation
Indices: 32727182--32727337 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32727172 AAATTGTACA
* *
32727182 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32727246 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32727263 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32727328 TGCGAGTTGA
65 TGCGAATTGA
32727338 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32727349 original size:82 final size:81
Alignment explanation
Indices: 32727178--32727358 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32727168 GATTAAATTG
* *
32727178 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32727243 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32727259 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32727323 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32727341 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32727359 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32732796 original size:27 final size:27
Alignment explanation
Indices: 32732766--32732943 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32732756 ATATTGAGTC
* * * *
32732766 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32732793 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32732820 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32732848 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32732875 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32732902 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32732929 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32732944 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32732905 original size:82 final size:81
Alignment explanation
Indices: 32732787--32732942 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32732777 TGCTATATAA
* *
32732787 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32732852 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32732869 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32732933 CACTTAGTGC
65 CACTTAGTGC
32732943 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32746051 original size:46 final size:46
Alignment explanation
Indices: 32746001--32746362 Score: 388
Period size: 46 Copynumber: 7.8 Consensus size: 46
32745991 TGGTTGAGCA
32746001 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32746047 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
32746092 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32746140 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
32746185 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32746233 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32746278 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32746326 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32746363 GCGGGTTACA
Statistics
Matches: 267, Mismatches: 22, Indels: 54
0.78 0.06 0.16
Matches are distributed among these distances:
42 6 0.02
43 15 0.06
45 9 0.03
46 121 0.45
47 87 0.33
48 9 0.03
50 14 0.05
51 6 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32746157 original size:93 final size:93
Alignment explanation
Indices: 32745998--32746355 Score: 689
Period size: 93 Copynumber: 3.8 Consensus size: 93
32745988 GGATGGTTGA
32745998 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32746063 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
32746091 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32746156 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
32746184 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32746249 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
32746277 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32746342 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32746356 CTTATGGGCG
Statistics
Matches: 262, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 262 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32748995 original size:42 final size:42
Alignment explanation
Indices: 32748936--32749041 Score: 176
Period size: 42 Copynumber: 2.5 Consensus size: 42
32748926 GCAGAGACAT
*
32748936 GGGCGTGTGTCTCAGCCGTGTGTGCTACATAGCCTAGAACAC
1 GGGCGTGTGTCTTAGCCGTGTGTGCTACATAGCCTAGAACAC
*
32748978 GGGCGTGTGTCTTAGCCGTGTGTGCTACATAGCCTAGAACAT
1 GGGCGTGTGTCTTAGCCGTGTGTGCTACATAGCCTAGAACAC
* *
32749020 GGGCGTGTGTCTTGGCCATGTG
1 GGGCGTGTGTCTTAGCCGTGTG
32749042 AATCTACACC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.16, C:0.23, G:0.34, T:0.27
Consensus pattern (42 bp):
GGGCGTGTGTCTTAGCCGTGTGTGCTACATAGCCTAGAACAC
Found at i:32754207 original size:24 final size:24
Alignment explanation
Indices: 32754174--32754232 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
32754164 TTTCTAAGTT
*
32754174 ATTTTTAGTTTCTTCTTTTTCACC
1 ATTTTTAGTTTCGTCTTTTTCACC
32754198 -TTTTTCAGTTTCGTCTTTTTCACC
1 ATTTTT-AGTTTCGTCTTTTTCACC
32754222 ATTTTTAGTTT
1 ATTTTTAGTTT
32754233 TTCCTATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 5 0.16
24 22 0.69
25 5 0.16
ACGTcount: A:0.12, C:0.19, G:0.07, T:0.63
Consensus pattern (24 bp):
ATTTTTAGTTTCGTCTTTTTCACC
Found at i:32759819 original size:46 final size:45
Alignment explanation
Indices: 32759766--32759975 Score: 185
Period size: 46 Copynumber: 4.5 Consensus size: 45
32759756 AGAGCTAGTG
*
32759766 TAAGACATGTTTGGGACATGCATCAGCCTCGGGACATAAGCCAGTA
1 TAAGACATGTCTGGGACATGCATCAGCCTC-GGACATAAGCCAGTA
* * *
32759812 TAAGACATGTCTGGGACATGCATC-GACCAC--ATTATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAG-CCTCGGA-CAT-A-AGCCAGTA
* * * * * * *
32759858 TAAGACCATGTCTGGGACTTGGCATCGGCAT-TGAGATAAGTGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCGGACATAA--GCCAGTA
* *
32759906 TAAGACATGTCTGGGACATGCATTAGCCTAGGGACATAAGCCAGTA
1 TAAGACATGTCTGGGACATGCATCAGCCT-CGGACATAAGCCAGTA
32759952 TAAGACATGTCTGGGACATGCATC
1 TAAGACATGTCTGGGACATGCATC
32759976 GACTACGAGA
Statistics
Matches: 133, Mismatches: 18, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 2 0.02
46 74 0.56
47 27 0.20
48 25 0.19
49 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
TAAGACATGTCTGGGACATGCATCAGCCTCGGACATAAGCCAGTA
Found at i:32759924 original size:140 final size:140
Alignment explanation
Indices: 32759672--32760121 Score: 532
Period size: 140 Copynumber: 3.2 Consensus size: 140
32759662 TGAGCTTGTG
* * *
32759672 TAAGACATGTCTTGGACATGCATCGACCACATTATGAGAGCCAATGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACT
* * ** *
32759737 TGGCATCGACATTAAGACGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGGGACA
66 TGGCATCGGCATTGAGATAAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGGGACA
32759802 TAAGCCAGTA
131 TAAGCCAGTA
32759812 TAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACT
1 TAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACT
* * *
32759877 TGGCATCGGCATTGAGATAAGTGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTAGGGACA
66 TGGCATCGGCATTGAGATAAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGGGACA
32759942 TAAGCCAGTA
131 TAAGCCAGTA
* * * * *
32759952 TAAGACATGTCTGGGACATGCATCGACTAC--GA-GATGTGTCAGTGTAAGGCCATGTCTGGGA-
1 TAAGACATGTCTGGGACATGCATCGACCACATTATGA-GAGCCAGTGTAAGACCATGTCTGGGAC
* ** ** *
32760013 TATGGCATTGGCACGGTTATGAGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCAGCCTC
65 T-TGGCATCGGCATTGAGAT-A-AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTC
** * *
32760078 -AAAGATGATAGCCAGTG
125 GGGACAT-A-AGCCAGTA
*
32760095 TAAGACAATGTCTAGGACATGGCATCG
1 TAAGAC-ATGTCTGGGACAT-GCATCG
32760122 GCACTTTACT
Statistics
Matches: 270, Mismatches: 30, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
137 3 0.01
138 37 0.14
139 1 0.00
140 172 0.64
141 16 0.06
142 10 0.04
143 13 0.05
144 12 0.04
145 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (140 bp):
TAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACT
TGGCATCGGCATTGAGATAAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGGGACA
TAAGCCAGTA
Found at i:32764927 original size:17 final size:17
Alignment explanation
Indices: 32764905--32764939 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
32764895 CAGAATTTGT
32764905 GTACCTGAGGACAATGA
1 GTACCTGAGGACAATGA
32764922 GTACCTGAGGACAATGA
1 GTACCTGAGGACAATGA
32764939 G
1 G
32764940 CTTATTCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (17 bp):
GTACCTGAGGACAATGA
Found at i:32767381 original size:45 final size:48
Alignment explanation
Indices: 32767169--32767437 Score: 193
Period size: 46 Copynumber: 5.7 Consensus size: 48
32767159 TCATTTGTGT
* *
32767169 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCACA-TTATG-A
1 GAGCTAGTGTAAGATCATGTCTGGGACATGCATCG-GCACAGTGATGTA
* * * ** ** * *
32767215 GAGCCAGTGTAAGACCATGTTTGCAACATGGCATCGGCATTGAGACG-A
1 GAGCTAGTGTAAGATCATGTCTGGGACAT-GCATCGGCACAGTGATGTA
* ** * * **
32767263 GAGCTAGTGTAAGA-CATGTCTGGGACAAGCATTAGC-CTCGGGGCGTA
1 GAGCTAGTGTAAGATCATGTCTGGGACATGCATCGGCAC-AGTGATGTA
* *
32767310 -AGCTAGTATAAGA-CATGTCTAGGACATGCATCGGCTACAG-GATGT-
1 GAGCTAGTGTAAGATCATGTCTGGGACATGCATCGGC-ACAGTGATGTA
* *
32767355 G-TC-AGTGTAAGATCATGTCTGGGACATGGCATCGGCACAGTTATGTGA
1 GAGCTAGTGTAAGATCATGTCTGGGACAT-GCATCGGCACAGTGATGT-A
32767403 GAGCTAGTGTAAGATCATGTCTGGGACATGTCATC
1 GAGCTAGTGTAAGATCATGTCTGGGACATG-CATC
32767438 TGTAGTTTAC
Statistics
Matches: 173, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
44 8 0.05
45 18 0.10
46 68 0.39
47 25 0.14
48 24 0.14
49 2 0.01
50 28 0.16
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GAGCTAGTGTAAGATCATGTCTGGGACATGCATCGGCACAGTGATGTA
Found at i:32769572 original size:48 final size:48
Alignment explanation
Indices: 32769480--32769575 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
32769470 AAATTATAAT
* *
32769480 TTTGTAAAAGTATGATTTATGGACTGATTGGAATAATGTGATAATTAA
1 TTTGTAAAAGTATGATTTATAGACTGATTGGAATAATGTAATAATTAA
* * *
32769528 TTTGTCAAAGTATGATTTATAGACTGACTT-GAGTAATTTAATAATTAA
1 TTTGTAAAAGTATGATTTATAGACTGA-TTGGAATAATGTAATAATTAA
32769576 ATAAGTGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
48 40 0.95
49 2 0.05
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.41
Consensus pattern (48 bp):
TTTGTAAAAGTATGATTTATAGACTGATTGGAATAATGTAATAATTAA
Found at i:32794074 original size:13 final size:13
Alignment explanation
Indices: 32794056--32794088 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32794046 CTGAGTAGGA
*
32794056 TCACACTGTCGTG
1 TCACACGGTCGTG
32794069 TCACACGGTCGTG
1 TCACACGGTCGTG
32794082 TCACACG
1 TCACACG
32794089 CCCATGTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.33, G:0.24, T:0.24
Consensus pattern (13 bp):
TCACACGGTCGTG
Found at i:32799526 original size:42 final size:39
Alignment explanation
Indices: 32799466--32799550 Score: 116
Period size: 42 Copynumber: 2.1 Consensus size: 39
32799456 CTACATAGTG
* *
32799466 TTTTTTTTTTTGCCTGGTTTTATTTAATTAATTTTCTTTTAA
1 TTTTTTCTTTTGCCTGGTTTTAATT-ATT--TTTTCTTTTAA
*
32799508 TTTTTTCTTTTGCTTGGTTTTAATTATTTTTTCTTTTAA
1 TTTTTTCTTTTGCCTGGTTTTAATTATTTTTTCTTTTAA
32799547 TTTT
1 TTTT
32799551 GGCCCATGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
39 15 0.38
41 3 0.08
42 22 0.55
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (39 bp):
TTTTTTCTTTTGCCTGGTTTTAATTATTTTTTCTTTTAA
Found at i:32804240 original size:48 final size:48
Alignment explanation
Indices: 32804174--32804630 Score: 556
Period size: 48 Copynumber: 9.5 Consensus size: 48
32804164 GTACTAGGGT
* *
32804174 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * *
32804222 TATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGGCATTGA
* *
32804270 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCACTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * *
32804318 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * *
32804366 TATGTGAGCTAGTGTAACACCATGTTTGGAACATGGAATTGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * ** * * *
32804414 TATGAGAGCTAGTGTAAGACTATGTCAGGGACATGGCATCAGCCTTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* ** *
32804462 TATGTGAGCCAGTGTAAGACCATGTTTCAAACATGGCATCAGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * *
32804510 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * *
32804558 TATGTGAGCCAGTCTAAGACCATGTTTGGAACATGGCATCGGTATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
*
32804606 TATGAGAGCCAGTGTAAGACAATGT
1 TATGAGAGCCAGTGTAAGACCATGT
32804631 CTAAGACATG
Statistics
Matches: 341, Mismatches: 66, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
47 3 0.01
48 335 0.98
49 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
Found at i:32804338 original size:96 final size:96
Alignment explanation
Indices: 32804174--32804641 Score: 731
Period size: 96 Copynumber: 4.9 Consensus size: 96
32804164 GTACTAGGGT
*
32804174 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
*
32804239 GACCATGTCTAGGACATGGCATCGGCCTCGA
66 GACCATGTCTAGGACATGGCATCAGCCTCGA
*
32804270 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCACTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
* *
32804335 GACCATGTTTGGGACATGGCATCAGCCTCGA
66 GACCATGTCTAGGACATGGCATCAGCCTCGA
* * * *
32804366 TATGTGAGCTAGTGTAACACCATGTTTGGAACATGGAATTGGCATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
* *
32804431 GACTATGTC-AGGGACATGGCATCAGCCTTGA
66 GACCATGTCTA-GGACATGGCATCAGCCTCGA
** *
32804462 TATGTGAGCCAGTGTAAGACCATGTTTCAAACATGGCATCAGCATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
* *
32804527 GACCATGTCTGGGACATGGCATCGGCCTCGA
66 GACCATGTCTAGGACATGGCATCAGCCTCGA
* * *
32804558 TATGTGAGCCAGTCTAAGACCATGTTTGGAACATGGCATCGGTATTGATATGAGAGCCAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
* *
32804623 GACAATGTCTAAGACATGG
66 GACCATGTCTAGGACATGG
32804642 TATCTACAGC
Statistics
Matches: 336, Mismatches: 34, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
96 336 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
GACCATGTCTAGGACATGGCATCAGCCTCGA
Found at i:32809505 original size:17 final size:17
Alignment explanation
Indices: 32809483--32809519 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
32809473 TCATTAAATC
32809483 CATGAAAACTGCAGGAG
1 CATGAAAACTGCAGGAG
*
32809500 CATGAAAATTGCAGGAG
1 CATGAAAACTGCAGGAG
32809517 CAT
1 CAT
32809520 TCGTTAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.27, T:0.16
Consensus pattern (17 bp):
CATGAAAACTGCAGGAG
Found at i:32813593 original size:42 final size:42
Alignment explanation
Indices: 32813538--32813618 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
32813528 ATCTCACATT
** * *
32813538 GATGACATATCCCAGATTTGGTTTTATACAAAATCTCATTTC
1 GATGACATATCCCAGACGTGGTCTTACACAAAATCTCATTTC
* * *
32813580 GATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCAT
1 GATGACATATCCCAGACGTGGTCTTACACAAAATCTCAT
32813619 ATCAACGCCA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
GATGACATATCCCAGACGTGGTCTTACACAAAATCTCATTTC
Found at i:32815588 original size:42 final size:42
Alignment explanation
Indices: 32815541--32815654 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
32815531 GTTGAGATTA
*
32815541 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGA-CTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATC-C
* * * *
32815583 TGTGTAAGACCATAGCTGGGCTATTGGCATCGTTATGAGATCC
1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCC
* * *
32815626 CATGTAAGACCATATCTGGAATATAGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
32815655 TGGTATGGTG
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 25 0.42
43 33 0.56
44 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCC
Found at i:32815766 original size:20 final size:20
Alignment explanation
Indices: 32815741--32815778 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32815731 AATGTTTAAG
32815741 TTGTGAAAGACTATGGTATT
1 TTGTGAAAGACTATGGTATT
*
32815761 TTGTGAAAGATTATGGTA
1 TTGTGAAAGACTATGGTA
32815779 AGTTGCAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (20 bp):
TTGTGAAAGACTATGGTATT
Found at i:32824387 original size:49 final size:48
Alignment explanation
Indices: 32824334--32824504 Score: 166
Period size: 49 Copynumber: 3.5 Consensus size: 48
32824324 CAAGAGCTAG
* *
32824334 TGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCCAA
* * * * *
32824383 TGTAAGACCTGTCTGGGACATGGCATCAACCTCGTTATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAAGCCAA
* * ** **
32824432 TGTAAGACCTGTCTGGGATATGGCATAGACTTGAT-G-TGTTAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGCCAA
* *
32824478 TGTAAGACCATTTCTAGGACATGGCAT
1 TGTAAGACC-TGTCTGGGACATGGCAT
32824505 TGGCCATGTT
Statistics
Matches: 99, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 15 0.15
47 14 0.14
48 3 0.03
49 67 0.68
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGCCAA
Found at i:32831927 original size:44 final size:44
Alignment explanation
Indices: 32831874--32831998 Score: 110
Period size: 46 Copynumber: 2.8 Consensus size: 44
32831864 ATACTCATAC
*
32831874 CATGACATCGGGTGATATGTGTGCTAGTGTAAGACATGTCCAGGA
1 CATG-CATCGGTTGATATGTGTGCTAGTGTAAGACATGTCCAGGA
* * * * * *
32831919 CATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCTGTCTAGGA
1 CATGCATCGG--TTGATATGTGTGCTAGTGTAAGACATGTCCAGGA
* *
32831965 CATGGCATCAGCTTGTTATGTGT-C-AGTGTAAGAC
1 CAT-GCATC-GGTTGATATGTGTGCTAGTGTAAGAC
32831999 CTATCTGCGA
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
44 16 0.25
45 5 0.08
46 36 0.57
47 5 0.08
48 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
CATGCATCGGTTGATATGTGTGCTAGTGTAAGACATGTCCAGGA
Found at i:32844598 original size:50 final size:50
Alignment explanation
Indices: 32844514--32845051 Score: 483
Period size: 50 Copynumber: 10.8 Consensus size: 50
32844504 CATTATGAGT
* *
32844514 CACG-TGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAAATTGATAGG
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
*
32844563 C-CGTATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGG
1 CACG-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * * * * * *
32844613 TCA-TATGTGTAGTACTAAGTGCA-GCTACTATGCGCACCCG-TTAACTTCGAT
1 -CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG-G
* * * *
32844664 CACG-TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGG
* * * *
32844714 CACG-TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGG
* *
32844764 CACG-TGTGTAGTACTAAGTACAGGCTACTACGTGTTCCAGATTGATAGG
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* *** * * * *
32844813 TCAC-ATGTGTAGTGCTAAGTGCAGGCTACTATACGTACCCG-TTAACTTCGAT
1 -CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG-G
* * * *
32844865 CACG-TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGG
* * * * *
32844915 CACG-TATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGG
*
32844965 CACG-TATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* *
32845014 -TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 CACG-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
32845052 TAGAGAGCTT
Statistics
Matches: 413, Mismatches: 55, Indels: 41
0.81 0.11 0.08
Matches are distributed among these distances:
48 7 0.02
49 21 0.05
50 333 0.81
51 50 0.12
52 2 0.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
Found at i:32844691 original size:100 final size:100
Alignment explanation
Indices: 32844512--32845051 Score: 581
Period size: 100 Copynumber: 5.4 Consensus size: 100
32844502 TCCATTATGA
* ** * *
32844512 GTCACGTGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCA-A-A-TTGATAGGC-CGTATGTGT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTT-A-AGTCACG--TGTGT
*
32844573 AGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAG
62 AGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * *
32844612 GTCATATGTGTAGTACTAAGTGCA-GCTACTATGCGCACCCGTTAACTT-CGATCACGTGTGTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT-ACTTAAG-TCACGTGTGTAG
* * * *
32844675 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
64 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * **
32844712 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAAGTCACGTGTGTAGTA
* *
32844777 CTAAGTACAGGCTACTACGTGTTCCAGATTGATAG
66 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * *
32844812 GTCACATGTGTAGTGCTAAGTGCAGGCTACTATACGTACCCGTTAACTT-CGATCACGTGTGTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT-ACTTAAG-TCACGTGTGTAG
* * * *
32844876 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
64 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * ** *
32844913 GTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAAGTCACGTGTGTAGTA
32844978 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
66 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
32845013 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
32845052 TAGAGAGCTT
Statistics
Matches: 358, Mismatches: 71, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
99 11 0.03
100 246 0.69
101 96 0.27
102 3 0.01
103 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAAGTCACGTGTGTAGTA
CTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:32844901 original size:151 final size:151
Alignment explanation
Indices: 32844713--32844994 Score: 476
Period size: 151 Copynumber: 1.9 Consensus size: 151
32844703 GATGGTTAAG
*
32844713 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTAC
* * * *
32844778 TAAGTACAGGCTACTACGTGT-TCCAGATTGATAGGTCACATGTGTAGTGCTAAGTGCAGGCTAC
66 TAAGTACAGGCTACTACGTGTAT-CAGATGGATAAGTCACATATGTAGTACTAAGTGCAGGCTAC
32844842 TATACGTACCCGTTAACTTCGA
130 TATACGTACCCGTTAACTTCGA
32844864 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTAC
* * *
32844929 TAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTACTAAGTGCAGGCTACT
66 TAAGTACAGGCTACTACGTGTATCAGATGGATAAGTCACATATGTAGTACTAAGTGCAGGCTACT
32844994 A
131 A
32844995 CGTGTACCAG
Statistics
Matches: 122, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
151 121 0.99
152 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTAC
TAAGTACAGGCTACTACGTGTATCAGATGGATAAGTCACATATGTAGTACTAAGTGCAGGCTACT
ATACGTACCCGTTAACTTCGA
Found at i:32844935 original size:201 final size:201
Alignment explanation
Indices: 32844511--32845045 Score: 887
Period size: 201 Copynumber: 2.7 Consensus size: 201
32844501 ATCCATTATG
* * * * * *
32844511 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAAATTGAT-AGGC-CGTATGTGTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACG--TGTGTA
* *
32844574 GTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGGTCATATGTGTAGTACTAAGTGCA-GC
64 GTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGC
*
32844638 TACTATGCGCACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
129 TACTATACGCACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
32844703 GATGGTTA
194 GATGGTTA
32844711 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGT
* * *
32844776 ACTAAGTACAGGCTACTACGTGTTCCAGATTGATAGGTCACATGTGTAGTGCTAAGTGCAGGCTA
66 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTA
*
32844841 CTATACGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA
131 CTATACGCACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA
32844906 TGGTTA
196 TGGTTA
* *
32844912 AGTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGT
*
32844977 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
66 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTA
32845042 CTAT
131 CTAT
32845046 GTGTACTAGA
Statistics
Matches: 313, Mismatches: 19, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
200 107 0.34
201 204 0.65
202 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (201 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGT
ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTA
CTATACGCACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA
TGGTTA
Found at i:32845276 original size:16 final size:16
Alignment explanation
Indices: 32845255--32845286 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32845245 AGAATGGAGT
32845255 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
32845271 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
32845287 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:32849273 original size:42 final size:42
Alignment explanation
Indices: 32849226--32849359 Score: 223
Period size: 42 Copynumber: 3.2 Consensus size: 42
32849216 TGGCCCTTAG
* ** *
32849226 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
32849268 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
32849310 GCCCATTTCAATATCACATGAAATACCAATGAATATATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
32849352 GCCCATTT
1 GCCCATTT
32849360 GGGGAGACTA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:32849535 original size:25 final size:25
Alignment explanation
Indices: 32849507--32849601 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
32849497 CTCTTTTAAT
* *
32849507 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
32849532 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
32849557 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
32849582 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
32849602 AGCACCTCCT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:32849537 original size:50 final size:49
Alignment explanation
Indices: 32849482--32849602 Score: 154
Period size: 50 Copynumber: 2.4 Consensus size: 49
32849472 TTTATCATAT
* *
32849482 AACTGGAGGCCTAGCCTCTTTTAAT-AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGG-GGCATAGCC-CTTTTAATAAACTGGGGCAAAGCCCTTTTCGATA
* ** *
32849532 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCATAGCCCTTTT-AATAAACTGGGGCAAAGCCCTTTTCGATA
32849582 AACTGGGGCATAGCCCTTTTA
1 AACTGGGGCATAGCCCTTTTA
32849603 GCACCTCCTC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
48 5 0.08
49 8 0.13
50 48 0.79
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (49 bp):
AACTGGGGCATAGCCCTTTTAATAAACTGGGGCAAAGCCCTTTTCGATA
Found at i:32850510 original size:27 final size:27
Alignment explanation
Indices: 32850410--32850501 Score: 141
Period size: 27 Copynumber: 3.4 Consensus size: 27
32850400 GGGCATATTC
* *
32850410 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
32850437 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
32850464 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCACTTTACCCTACAGGGGCTTTACG
32850491 GTCACTTTACC
1 GTCACTTTACC
32850502 TAATAGGGGT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 60 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:32850585 original size:27 final size:27
Alignment explanation
Indices: 32850532--32850855 Score: 174
Period size: 27 Copynumber: 12.0 Consensus size: 27
32850522 TTTCATCCTA
* * * * *
32850532 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
32850559 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
32850586 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C
* * *
32850615 CAAGGGTATTTCTA-TAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAC
* * * * *
32850642 TAGGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTTAGTAATTTTATAAA-C
* ** * *
32850670 GAA-GGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
32850696 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTTTATAAAC
* * * *
32850723 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
32850750 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
32850777 C-AGGGCATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAC
* * *
32850803 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
32850830 CAAGGGTATTTTAGTAATTTTTTAAA
1 CAAGGGTATTTTAGTAATTTTATAAA
32850856 TCGATGGTAA
Statistics
Matches: 237, Mismatches: 49, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.00
26 21 0.09
27 182 0.77
28 17 0.07
29 16 0.07
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:32850830 original size:80 final size:81
Alignment explanation
Indices: 32850643--32850850 Score: 242
Period size: 80 Copynumber: 2.6 Consensus size: 81
32850633 TTTGTAAATT
** ** * * *
32850643 AGGGGTATTTTGGTAATTTTACAAATTGAA-GGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAA-CCAAGGGTATTTTAGCAATTTTACAAACCAGTGGCATTT
*
32850707 TGGTAATTTTACAAACT
65 TGGTAATTTTACAAACG
* *
32850724 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACCAG-GGCATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGCATTTT
* *
32850788 GGTAATTTTACTGATCG
66 GGTAATTTTAC-AAACG
** *
32850805 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTT
32850851 TTAAATCGAT
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 60 0.55
81 49 0.45
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGCATTTT
GGTAATTTTACAAACG
Found at i:32850859 original size:54 final size:54
Alignment explanation
Indices: 32850534--32850864 Score: 201
Period size: 54 Copynumber: 6.1 Consensus size: 54
32850524 TCATCCTACA
* * * ** * * *
32850534 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCG
* * * * * * * *
32850588 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-ATAACTTTGTAAAT-T
1 AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTATAAATCG
** * * * *
32850643 AGGGGTATTTTGGTAATTTTACAAATTGAA-GGTATTTCGGTAATTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAA-CCAAGGGTATTTTGGTAATTTTATAAATCG
* * * *
32850697 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CC
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCG
* * * * *
32850751 AGGGGTATTTTAGCAATTTTACAGACC-AGGGCATTTTGGTAATTTTACT-GATCG
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTA-TAAATCG
** * *
32850805 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTTTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCG
*
32850859 ATGGTA
1 AGGGTA
32850865 AAACAGTAAT
Statistics
Matches: 214, Mismatches: 48, Indels: 30
0.73 0.16 0.10
Matches are distributed among these distances:
53 42 0.20
54 119 0.56
55 21 0.10
56 32 0.15
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCG
Found at i:32850864 original size:27 final size:27
Alignment explanation
Indices: 32850561--32850891 Score: 95
Period size: 27 Copynumber: 12.2 Consensus size: 27
32850551 CTACAAACCA
* * *
32850561 AGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAATCG
* *
32850588 ATGGTATTTCTA-TAATTTT-TAGAAAGTCA
1 AGGGTATTT-TAGTAATTTTGT--AAA-TCG
* *
32850617 AGGGTATTTCTA-TAACTTTGTAAAT-T
1 AGGGTATTT-TAGTAATTTTGTAAATCG
* ** *
32850643 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTAGTAATTTTGTAAATCG
* ** *** *
32850671 AAGGTATTTCGGTAATTTCACAAA-CC
1 AGGGTATTTTAGTAATTTTGTAAATCG
* ** *
32850697 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTAGTAATTTTGTAAATCG
* ** *
32850724 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTTAGTAATTTTGTAAATCG
* ** * *
32850751 AGGGGTATTTTAGCAATTTTACAGA-CC
1 A-GGGTATTTTAGTAATTTTGTAAATCG
* * * *
32850778 AGGGCATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTAGTAATTTT-GTAAATCG
* * *
32850805 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAATCG
*
32850832 AGGGTATTTTAGTAATTTTTTAAATCG
1 AGGGTATTTTAGTAATTTTGTAAATCG
* **** * *
32850859 ATGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTTAGTAATTTTGTAAATCG
32850886 AGGGTA
1 AGGGTA
32850892 AAACAATAAT
Statistics
Matches: 243, Mismatches: 48, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
26 22 0.09
27 192 0.79
28 9 0.04
29 19 0.08
30 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTGTAAATCG
Found at i:32850892 original size:27 final size:27
Alignment explanation
Indices: 32850842--32850999 Score: 192
Period size: 27 Copynumber: 5.9 Consensus size: 27
32850832 AGGGTATTTT
* * *
32850842 AGTAATTTTTTAAATCGATGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
32850869 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32850896 AATAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
32850923 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
32850950 GGTAATTTTGTAAGTCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32850977 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
32851000 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
27 113 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:32850917 original size:81 final size:80
Alignment explanation
Indices: 32850832--32851012 Score: 202
Period size: 81 Copynumber: 2.2 Consensus size: 80
32850822 TTGTAAACCA
* *
32850832 AGGGTATTTTAGTAATTTTTTAAATCGATGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 AGGGTA-TTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
32850897 ATAATTCTATAAATCG
65 ATAATTCTATAAATCG
** * * * * * *
32850913 AGGGTA-AAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAAT
1 AGGGTATTTA-G-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
**
32850977 GGTAATTCTATAAATCG
64 AATAATTCTATAAATCG
*
32850994 AGGGTACTTTGGTAATTTT
1 AGGGTA-TTTAGTAATTTT
32851013 ACAATTTGAG
Statistics
Matches: 80, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 77 0.96
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (80 bp):
AGGGTATTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAA
TAATTCTATAAATCG
Found at i:32852336 original size:43 final size:43
Alignment explanation
Indices: 32852118--32852334 Score: 251
Period size: 43 Copynumber: 5.0 Consensus size: 43
32852108 TATATGTGAT
**
32852118 ATCGATATGTGATTATGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
* *
32852161 ATCGATATGTGATTACATGTAAGACCAGGTCTGGGACGTTGGT
1 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
* * * *
32852204 ATCGATATGTGATTACGTGTAAGACCATGTTTGGGATGTTGGC
1 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
*
32852247 ATCGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAG-TGGC
1 ATCGATATGTGATTAC-ATGTAAGACCAC-GTCTGGGAC-GTTGGC
* ** * * *
32852290 ATTGATATAAGGTTACATGTAAGGCCACGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
32852333 AT
1 AT
32852335 TGTACGATAT
Statistics
Matches: 148, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
42 1 0.01
43 145 0.98
44 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.30
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
Found at i:32856581 original size:61 final size:61
Alignment explanation
Indices: 32856423--32856594 Score: 202
Period size: 62 Copynumber: 2.8 Consensus size: 61
32856413 TCTTGTTTAG
* ** * * *
32856423 AGTTTTGCCACAAAGGTGTTCTTTTACA-TACAATACTCACCACAAATGCTTTCCTATCCAA
1 AGTTTTTCCACAAAGGCATTCATTTACATTA-AGTACTCACCACAAAGGCTTTCCTATCCAA
* * * * *
32856484 ACTTTTTTTCACAACGGCATTCATTTACATTAAGTACTCACCAAAAAGGTTTTCCTATCCAA
1 A-GTTTTTCCACAAAGGCATTCATTTACATTAAGTACTCACCACAAAGGCTTTCCTATCCAA
* *
32856546 AGTTTTTCCACAAAGGCATTCCTTTACATTTAGTACTCACCACAAAGGC
1 AGTTTTTCCACAAAGGCATTCATTTACATTAAGTACTCACCACAAAGGC
32856595 ATTCTTGTTA
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
61 42 0.46
62 47 0.52
63 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (61 bp):
AGTTTTTCCACAAAGGCATTCATTTACATTAAGTACTCACCACAAAGGCTTTCCTATCCAA
Found at i:32856611 original size:61 final size:60
Alignment explanation
Indices: 32856421--32856690 Score: 181
Period size: 61 Copynumber: 4.4 Consensus size: 60
32856411 TTTCTTGTTT
* ** * * * * *
32856421 AGAGTTTTGCCACAAAGGTGTTCTTTTACA-TACAATACTCACCACAAATGCTTTCCTATCCA
1 AGAGTTTTTCCACAAAGGCATTCCTTTACATTA-AGTACTCACCAAAAAGGCTTTCCT-T-TA
* * * * * *
32856483 A-ACTTTTTTTCACAACGGCATTCATTTACATTAAGTACTCACCAAAAAGGTTTTCCTATCCA
1 AGA-GTTTTTCCACAAAGGCATTCCTTTACATTAAGTACTCACCAAAAAGGCTTTCCT-T-TA
* * * *
32856545 A-AGTTTTTCCACAAAGGCATTCCTTTACATTTAGTACTCACCACAAAGGCATTCTTGTTA
1 AGAGTTTTTCCACAAAGGCATTCCTTTACATTAAGTACTCACCAAAAAGGCTTTCCT-TTA
* * * ** *
32856605 AGAGTTTTGCCAC-AAGGCCAGTCTTTTATGTTCAA-TACTCACCAAAAAGGCTTTCCTTTC
1 AGAGTTTTTCCACAAAGG-CATTCCTTTACATT-AAGTACTCACCAAAAAGGCTTTCCTTTA
* * *
32856665 AGAGTTTTTCCTCGAAGGCTTTCCTT
1 AGAGTTTTTCCACAAAGGCATTCCTT
32856691 CAGAGTTTTT
Statistics
Matches: 165, Mismatches: 37, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
60 24 0.15
61 90 0.55
62 49 0.30
63 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (60 bp):
AGAGTTTTTCCACAAAGGCATTCCTTTACATTAAGTACTCACCAAAAAGGCTTTCCTTTA
Found at i:32856682 original size:28 final size:28
Alignment explanation
Indices: 32856651--32856718 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
32856641 ACTCACCAAA
32856651 AAGGCTTTCCTTTCAGAGTTTTTCC-TCG
1 AAGGCTTTCCTTTCAGAGTTTTTCCAT-G
32856679 AAGGCTTTCC-TTCAGAGTTTTTCCATG
1 AAGGCTTTCCTTTCAGAGTTTTTCCATG
32856706 AAGGCTTTCCTTT
1 AAGGCTTTCCTTT
32856719 ACATCCACTA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
27 25 0.66
28 13 0.34
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.43
Consensus pattern (28 bp):
AAGGCTTTCCTTTCAGAGTTTTTCCATG
Found at i:32857071 original size:53 final size:53
Alignment explanation
Indices: 32857004--32857163 Score: 175
Period size: 53 Copynumber: 3.0 Consensus size: 53
32856994 CTTCCTTAAA
*
32857004 TTTT-TCCATATGATGCTATAACCCACCAGTTACAATCTTACACT-ATATGGTC
1 TTTTGTCCATATGATGCTATAACCCACCAGTTACAGTCTTACA-TGATATGGTC
* * * * *
32857056 TTATTGT-CATATGATG-TCATCACCCACCAGTTACGGTCCTATATGATATGATC
1 TT-TTGTCCATATGATGCT-ATAACCCACCAGTTACAGTCTTACATGATATGGTC
* * * *
32857109 TTTTTTCCATATGATGCCATAACCCTCCAATTACAGTCTTACATGATATGGTC
1 TTTTGTCCATATGATGCTATAACCCACCAGTTACAGTCTTACATGATATGGTC
32857162 TT
1 TT
32857164 CTTCAGTGCC
Statistics
Matches: 87, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
52 7 0.08
53 79 0.91
54 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.38
Consensus pattern (53 bp):
TTTTGTCCATATGATGCTATAACCCACCAGTTACAGTCTTACATGATATGGTC
Found at i:32859133 original size:14 final size:14
Alignment explanation
Indices: 32859114--32859140 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32859104 TAGGAATGTC
32859114 ATAAGAAAATTTTG
1 ATAAGAAAATTTTG
32859128 ATAAGAAAATTTT
1 ATAAGAAAATTTT
32859141 ATTGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (14 bp):
ATAAGAAAATTTTG
Found at i:32870967 original size:46 final size:45
Alignment explanation
Indices: 32870878--32871002 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 45
32870868 TTGAGACGAG
* * * ** *
32870878 AGCTAGTGTAATACATTTCTGGGACATGCATCGGCCTCGAGATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
32870923 AAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
*
32870969 -GTCAAGTGTAAGACCATGTCTGGGACATGGCATC
1 AG-CTAGTGTAAGA-CATGTCTGGGACAT-GCATC
32871003 GGCACATATA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
44 1 0.01
45 10 0.14
46 53 0.77
47 5 0.07
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
Found at i:32871577 original size:46 final size:45
Alignment explanation
Indices: 32871488--32871612 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 45
32871478 TTGAGACGAG
* * * ** *
32871488 AGCTAGTGTAATACATTTCTGGGACATGCATCGGCCTCGAGATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
32871533 AAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
*
32871579 -GTCAAGTGTAAGACCATGTCTGGGACATGGCATC
1 AG-CTAGTGTAAGA-CATGTCTGGGACAT-GCATC
32871613 GGCACATATA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
44 1 0.01
45 10 0.14
46 53 0.77
47 5 0.07
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
Done.