Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 95 of 235
Found at i:32871679 original size:610 final size:610
Alignment explanation
Indices: 32870520--32872344 Score: 3605
Period size: 610 Copynumber: 3.0 Consensus size: 610
32870510 CATTTTAAAT
* *
32870520 CAAGAATTACATAATCCAAGCCTAGACCGGGGAAAAATCAAAGCTAGCGGACTAAAATCGACTAG
1 CAAGAATTACACAATCCAAGCCTAGACCGAGGAAAAATCAAAGCTAGCGGACTAAAATCGACTAG
*
32870585 CCACCTACATTTTTTATTACCGAGGTAAGTTGTATGTAAATAATACAACTACATAGTATTATATG
66 CCACCTACATTTTTTATTACCGAGGTAAGTTGTATGTAAATAATATAACTACATAGTATTATATG
32870650 TGTTTGAATTGTTATAATATAAGTTTCTTGATTGTGGAAATGATGATGTATGATGAATATTGAGA
131 TGTTTGAATTGTTATAATATAAGTTTCTTGATTGTGGAAATGATGATGTATGATGAATATTGAGA
32870715 TATTAGAACCCCGTTTGAACCTTAGGAAATAAATCGAATATTCATGCCATGATATTTGGGTTATT
196 TATTAGAACCCCGTTTGAACCTTAGGAAATAAATCGAATATTCATGCCATGATATTTGGGTTATT
32870780 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGATC
261 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGATC
32870845 ATGACTGGGATATGGCATTGACATTGAGACGAGAGCTAGTGTAATACATTTCTGGGACATGCATC
326 ATGACTGGGATATGGCATTGACATTGAGACGAGAGCTAGTGTAATACATTTCTGGGACATGCATC
32870910 GGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGTGTCAAG
391 GGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGTGTCAAG
32870975 TGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGACAGTGCAAGACCAGTCTATG
456 TGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGACAGTGCAAGACCAGTCTATG
* *
32871040 ACATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGACTGGGACATGGCGTCGGACT
521 ACATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGACT
32871105 CGATTTTTGTAGTCAGTGTACAATC
586 CGATTTTTGTAGTCAGTGTACAATC
32871130 CAAGAATTACACAATCCAAGCCTAGACCGAGGAAAAATCAAAGCTAGCGGACTAAAATCGACTAG
1 CAAGAATTACACAATCCAAGCCTAGACCGAGGAAAAATCAAAGCTAGCGGACTAAAATCGACTAG
32871195 CCACCTACATTTTTTATTACCGAGGTAAGTTGTATGTAAATAATATAACTACATAGTATTATATG
66 CCACCTACATTTTTTATTACCGAGGTAAGTTGTATGTAAATAATATAACTACATAGTATTATATG
32871260 TGTTTGAATTGTTATAATATAAGTTTCTTGATTGTGGAAATGATGATGTATGATGAATATTGAGA
131 TGTTTGAATTGTTATAATATAAGTTTCTTGATTGTGGAAATGATGATGTATGATGAATATTGAGA
32871325 TATTAGAACCCCGTTTGAACCTTAGGAAATAAATCGAATATTCATGCCATGATATTTGGGTTATT
196 TATTAGAACCCCGTTTGAACCTTAGGAAATAAATCGAATATTCATGCCATGATATTTGGGTTATT
32871390 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGATC
261 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGATC
32871455 ATGACTGGGATATGGCATTGACATTGAGACGAGAGCTAGTGTAATACATTTCTGGGACATGCATC
326 ATGACTGGGATATGGCATTGACATTGAGACGAGAGCTAGTGTAATACATTTCTGGGACATGCATC
32871520 GGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGTGTCAAG
391 GGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGTGTCAAG
32871585 TGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGACAGTGCAAGACCAGTCTATG
456 TGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGACAGTGCAAGACCAGTCTATG
32871650 ACATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGACT
521 ACATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGACT
32871715 CGATTTTTGTAGTCAGTGTACAATC
586 CGATTTTTGTAGTCAGTGTACAATC
32871740 CAAGAATTACACAATCCAAGCCTAGACCGAGGAAAAATCAAAGCTAGCGGACTAAAATCGACTAG
1 CAAGAATTACACAATCCAAGCCTAGACCGAGGAAAAATCAAAGCTAGCGGACTAAAATCGACTAG
32871805 CCACCTACATTTTTTATTACCGAGGTAAGTTGTATGTAAATAATATAACTACATAGTATTATATG
66 CCACCTACATTTTTTATTACCGAGGTAAGTTGTATGTAAATAATATAACTACATAGTATTATATG
32871870 TGTTTGAATTGTTATAATATAAGTTTCTTGATTGTGGAAATGATGATGTATGATGAATATTGAGA
131 TGTTTGAATTGTTATAATATAAGTTTCTTGATTGTGGAAATGATGATGTATGATGAATATTGAGA
32871935 TATTAGAACCCCGTTTGAACCTTAGGAAATAAATCGAATATTCATGCCATGATATTTGGGTTATT
196 TATTAGAACCCCGTTTGAACCTTAGGAAATAAATCGAATATTCATGCCATGATATTTGGGTTATT
32872000 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGATC
261 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGATC
32872065 ATGACTGGGATATGGCATTGACATTGAGACGAGAGCTAGTGTAATACATTTCTGGGACATGCATC
326 ATGACTGGGATATGGCATTGACATTGAGACGAGAGCTAGTGTAATACATTTCTGGGACATGCATC
32872130 GGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGTGTCAAG
391 GGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGTGTCAAG
32872195 TGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGACAGTGCAAGACCAGTCTATG
456 TGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGACAGTGCAAGACCAGTCTATG
32872260 ACATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGACT
521 ACATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGACT
32872325 CGATTTTTGTAGTCAGTGTA
586 CGATTTTTGTAGTCAGTGTA
32872345 TGACCATGTT
Statistics
Matches: 1210, Mismatches: 5, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
610 1210 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (610 bp):
CAAGAATTACACAATCCAAGCCTAGACCGAGGAAAAATCAAAGCTAGCGGACTAAAATCGACTAG
CCACCTACATTTTTTATTACCGAGGTAAGTTGTATGTAAATAATATAACTACATAGTATTATATG
TGTTTGAATTGTTATAATATAAGTTTCTTGATTGTGGAAATGATGATGTATGATGAATATTGAGA
TATTAGAACCCCGTTTGAACCTTAGGAAATAAATCGAATATTCATGCCATGATATTTGGGTTATT
TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGATC
ATGACTGGGATATGGCATTGACATTGAGACGAGAGCTAGTGTAATACATTTCTGGGACATGCATC
GGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGTGTCAAG
TGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGACAGTGCAAGACCAGTCTATG
ACATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGACT
CGATTTTTGTAGTCAGTGTACAATC
Found at i:32872187 original size:46 final size:45
Alignment explanation
Indices: 32872098--32872222 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 45
32872088 TTGAGACGAG
* * * ** *
32872098 AGCTAGTGTAATACATTTCTGGGACATGCATCGGCCTCGAGATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
32872143 AAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
*
32872189 -GTCAAGTGTAAGACCATGTCTGGGACATGGCATC
1 AG-CTAGTGTAAGA-CATGTCTGGGACAT-GCATC
32872223 GGCACATATA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
44 1 0.01
45 10 0.14
46 53 0.77
47 5 0.07
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAACAAGATGT
Found at i:32877432 original size:21 final size:20
Alignment explanation
Indices: 32877404--32877442 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
32877394 TATTTCTTGT
32877404 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
32877424 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
32877443 CAAAAAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:32883825 original size:42 final size:42
Alignment explanation
Indices: 32883709--32883856 Score: 122
Period size: 42 Copynumber: 3.5 Consensus size: 42
32883699 GTCTGTAACA
* *
32883709 TCGTGTAAGACCATGTCTGGGACACAGGCCTCGAATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGAATT-AGATT
* *** *
32883752 TACGTATAAGACCATGTCTGGGACTTCGGCATCGTATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACAAAGGCATCGAAT-TAGATT
* * *
32883795 TCGTGTAAGACCCTGTCTAGGACAAAGGCATTGATATT-GAATT
1 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGA-ATTAG-ATT
* *
32883838 ACATGTAAGACCATG-CTGG
1 TCGTGTAAGACCATGTCTGG
32883857 TACTTCGACA
Statistics
Matches: 83, Mismatches: 18, Indels: 9
0.75 0.16 0.08
Matches are distributed among these distances:
42 30 0.36
43 23 0.28
44 29 0.35
45 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACAAAGGCATCGAATTAGATT
Found at i:32888186 original size:40 final size:40
Alignment explanation
Indices: 32888086--32888351 Score: 270
Period size: 40 Copynumber: 6.7 Consensus size: 40
32888076 GCTCCTCGTT
* * * *
32888086 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
32888126 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
32888165 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
32888205 CGAATGCCTTCGGGACTTAAACTCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTT-AACCCGGATTTAGTAACTCGCA
* * *
32888246 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
32888286 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
32888327 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
32888352 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
39 39 0.20
40 107 0.55
41 49 0.25
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:32888259 original size:81 final size:79
Alignment explanation
Indices: 32888086--32888298 Score: 257
Period size: 81 Copynumber: 2.7 Consensus size: 79
32888076 GCTCCTCGTT
* * * *
32888086 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGA
32888151 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* * * *
32888165 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAAACTCG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACAT-AACCCG
** *
32888230 GATTTAGTATCTCGCA
64 GATTTAACAACTCGCA
* * *
32888246 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC-AATGCCTTCGG
32888299 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 35 0.31
80 15 0.13
81 60 0.53
82 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGA
TTTAACAACTCGCA
Found at i:32888311 original size:121 final size:120
Alignment explanation
Indices: 32888088--32888344 Score: 270
Period size: 121 Copynumber: 2.1 Consensus size: 120
32888078 TCCTCGTTCA
* * * *
32888088 AATGCCTTCGGGACAT-AGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGAT
* * *
32888152 TTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TTAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
32888206 GAATGCCTTCGGGACTTAAACTCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 -AATGCCTTCGGGACTTAAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG
** * ** * *
32888271 AATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
64 -ATTTAACAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
32888328 AAAGCCTTCGGGACTTA
1 AATGCCTTCGGGACTTA
32888345 GCCCGGACAG
Statistics
Matches: 113, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
119 15 0.13
120 21 0.19
121 68 0.60
122 9 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACTTAAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:32888328 original size:81 final size:81
Alignment explanation
Indices: 32888086--32888351 Score: 215
Period size: 81 Copynumber: 3.3 Consensus size: 81
32888076 GCTCCTCGTT
* * * * * * *
32888086 CAAATGCCTTCGGGACATAGCCCGG-TTTTAGTAACTCACAC-AATGCCTTCGGGACAT-AACCC
1 CAAA-GCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGACTTAAACTC
* ** * *
32888148 GGATTTAACAACTCGCA
65 GGATATAGTATCTAGCA
* *
32888165 CGAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACGAATGCCTTCGGGACTTAAACTC
1 C-AAAGCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGACTTAAACTC
* *
32888229 GGATTTAGTATCTCGCA
65 GGATATAGTATCTAGCA
* * * **
32888246 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTC-
1 CAAA-GCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAAACT
*
32888308 CGGATATATTCA-CTTAGCA
64 CGGATATAGT-ATC-TAGCA
*
32888327 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAACCCGGA
32888352 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
79 32 0.21
80 50 0.32
81 70 0.45
82 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGACTTAAACTCG
GATATAGTATCTAGCA
Found at i:32888360 original size:41 final size:41
Alignment explanation
Indices: 32888283--32888360 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32888273 TTTGTATCTC
* * *
32888283 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
32888324 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
32888361 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:32889948 original size:45 final size:45
Alignment explanation
Indices: 32889884--32889973 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
32889874 GGCTGTCACA
32889884 ACAACTCCCCGAATGCCATTTACCACAATACTAGCACTCTGTTCT
1 ACAACTCCCCGAATGCCATTTACCACAATACTAGCACTCTGTTCT
* *
32889929 ACAACTTCCCGAATGCCATTTACCACAATACTGGCACTCTGTTCT
1 ACAACTCCCCGAATGCCATTTACCACAATACTAGCACTCTGTTCT
32889974 GTCTCGATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.28, C:0.34, G:0.10, T:0.28
Consensus pattern (45 bp):
ACAACTCCCCGAATGCCATTTACCACAATACTAGCACTCTGTTCT
Found at i:32890435 original size:122 final size:123
Alignment explanation
Indices: 32890229--32890473 Score: 370
Period size: 122 Copynumber: 2.0 Consensus size: 123
32890219 CAAATTCTCT
* * *
32890229 GATTTCTAAAATGCCAACACACAGTTTTATATCTTCGTTCAGTCCATCTTCGAAACGTTTGCACA
1 GATTTCTAAAATGCCAACACACAGCTTTATATCTTCGTTCAGTCCATCCTCGAAACGTTTACACA
* * * *
32890294 TTACGGCTTCTGAGGAAATGCATTCTCG-AGCGTATCGGCT-AACCTTACAAACTTTCG
66 TCACAGCTTCTGAAGAAATGCATTCTCGCA-CGTACCGGCTGAACCTTACAAACTTTCG
*
32890351 GATTTCTAAAATGCCAACATACAGCTTTATATCATT-GTTCAGTCCATCCTCGAAACGTTTACAC
1 GATTTCTAAAATGCCAACACACAGCTTTATATC-TTCGTTCAGTCCATCCTCGAAACGTTTACAC
*
32890415 ATCACAGCTTCTGAAGAAATGCATTCTCGCACGTACCGGCTGAGCCTTACAAACTTTCG
65 ATCACAGCTTCTGAAGAAATGCATTCTCGCACGTACCGGCTGAACCTTACAAACTTTCG
32890474 TTCGTAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
122 92 0.83
123 19 0.17
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (123 bp):
GATTTCTAAAATGCCAACACACAGCTTTATATCTTCGTTCAGTCCATCCTCGAAACGTTTACACA
TCACAGCTTCTGAAGAAATGCATTCTCGCACGTACCGGCTGAACCTTACAAACTTTCG
Found at i:32899252 original size:39 final size:40
Alignment explanation
Indices: 32899151--32899335 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
32899141 TTGAATGATG
* * * *
32899151 TCCGGCCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
32899190 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
32899231 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32899270 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32899309 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32899336 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:32899287 original size:79 final size:81
Alignment explanation
Indices: 32899151--32899335 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
32899141 TTGAATGATG
* * *
32899151 TCCGGCCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
32899215 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32899230 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32899292 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
32899310 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32899336 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:32899357 original size:79 final size:79
Alignment explanation
Indices: 32899204--32899368 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32899194 GGACTAAGAT
* * **
32899204 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32899269 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32899283 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32899346 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32899362 CCGAAGG
1 CCGAAGG
32899369 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32912001 original size:89 final size:88
Alignment explanation
Indices: 32911709--32912329 Score: 326
Period size: 85 Copynumber: 6.9 Consensus size: 88
32911699 ACTTTTCGTC
* * * * * * * *
32911709 TTAATCTGCTCCACTACAACTTCAGGAAGATAGGATTAGCTGTCTTCAGTCTACTCCGCCGTAAC
1 TTAACCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTGCTCCACTGCAAC
* *
32911774 TTTAGGGAGATAAGACTTGTGGA-
66 TTCAGGGAGATAAGACTTGT-AAT
** * * * *
32911797 TTAATTTGCTCCACTGCAACTTCAGGGAGATAAGATTTACCATGGTAGAT-TTGA-TCTGAC-CT
1 TTAACCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGC-T--T---TCTTCAGTCTG-CTCC
* * * *
32911859 ACTGCAACTTCAGAGG-TATAGGACTCGTCATT
58 ACTGCAACTTCAG-GGAGATAAGACTTGT-AAT
* *
32911891 TTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTGCTCCGCTGCAAC
1 TTAACCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTGCTCCACTGCAAC
*
32911956 TTTAGGGAGATAAGACTTGTAAT
66 TTCAGGGAGATAAGACTTGTAAT
* * * *
32911979 TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGG--T---TTTCTATGA-TCTGTTCTACTGC
1 TT-AACCTGCTCCACTGCAACTTCAGGGAGAT-AGGATTAGCTTTCT-TCAGTCTGCTCCACTGC
*
32912038 AACTTCAGAGAGATAAGA-TCTGTAAT
63 AACTTCAGGGAGATAAGACT-TGTAAT
* * * * * * *
32912064 TTATAGCTTCAATTTGTTCCACTGCAACTTTAGGAAAATAAGATTCGCTATCTTCAGTCTGCTCC
1 TTA-A-C--C----TGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTGCTCC
32912129 ACTGCAACTTCAGGGAGATAAGACTTGTAAT
58 ACTGCAACTTCAGGGAGATAAGACTTGTAAT
* * * * * *
32912160 TACAACCTGCTCCACTACAACTT-TGGAGAGATAAGG-TTTG--TT-TTGA-TCTGCTCTACTGC
1 T-TAACCTGCTCCACTGCAACTTCAGG-GAGAT-AGGATTAGCTTTCTTCAGTCTGCTCCACTGC
* *
32912219 GACTTCAGAGAGATAAGA-TCTGTAAT
63 AACTTCAGGGAGATAAGACT-TGTAAT
* * * * * * * * *
32912245 TTATAGCTTCAATATGTTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGTTTC
1 TTA-A-C--C----TGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTGCTCC
32912310 ACTGCAACTTCAGGGAGATA
58 ACTGCAACTTCAGGGAGATA
32912330 GGATCTACAA
Statistics
Matches: 406, Mismatches: 76, Indels: 94
0.70 0.13 0.16
Matches are distributed among these distances:
84 4 0.01
85 76 0.19
86 7 0.02
87 2 0.00
88 46 0.11
89 76 0.19
90 7 0.02
91 4 0.01
92 42 0.10
93 30 0.07
94 40 0.10
95 7 0.02
96 63 0.16
97 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (88 bp):
TTAACCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTGCTCCACTGCAAC
TTCAGGGAGATAAGACTTGTAAT
Found at i:32912012 original size:44 final size:43
Alignment explanation
Indices: 32911859--32912246 Score: 218
Period size: 44 Copynumber: 8.7 Consensus size: 43
32911849 GATCTGACCT
* * * *
32911859 ACTGCAACTTCAGAG-GTATAGGACTCGTCATTTTAATCTGCTCC
1 ACTGCAACTTCAGAGAG-ATAAGA-TTGTAATTTCAATCTGCTCC
* * * *
32911903 ACTGCAACTTCAGGGAGATAGGATTAGCT-TTCTTCAGTCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATT-G-TAAT-TTCAATCTGCTCC
* * * *
32911948 GCTGCAACTTTAGGGAGATAAGACTTGTAATTTCAACCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-TTGTAATTTCAATCTGCTCC
* ** * * * *
32911992 ACTGCAACTTCAGAGAGATAAGGTT-TTCTAT-GATCTGTTCT
1 ACTGCAACTTCAGAGAGATAAGATTGTAATTTCAATCTGCTCC
* *
32912033 ACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATTTGTTCC
1 ACTGCAACTTCAGAGAGATAAGAT-TGT-A---AT---TTCAATCTGCTCC
* * *
32912084 ACTGCAACTTTAG-GAAAATAAGATTCGCT-ATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGAG-AGATAAGATT-G-TAAT-TTCAATCTGCTCC
* * *
32912129 ACTGCAACTTCAGGGAGATAAGACTTGTAATTACAACCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-TTGTAATTTCAATCTGCTCC
* ** * * *
32912173 ACTACAACTTTGGAGAGATAAGGTTTGT--TTT-GATCTGCTCT
1 ACTGCAACTTCAGAGAGATAA-GATTGTAATTTCAATCTGCTCC
*
32912214 ACTGCGACTTCAGAGAGATAAGATCTGTAATTT
1 ACTGCAACTTCAGAGAGATAAGAT-TGTAATTT
32912247 ATAGCTTCAA
Statistics
Matches: 265, Mismatches: 53, Indels: 53
0.71 0.14 0.14
Matches are distributed among these distances:
40 2 0.01
41 56 0.21
42 6 0.02
43 7 0.03
44 85 0.32
45 69 0.26
46 5 0.02
47 3 0.01
50 3 0.01
51 28 0.11
52 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
ACTGCAACTTCAGAGAGATAAGATTGTAATTTCAATCTGCTCC
Found at i:32912127 original size:181 final size:181
Alignment explanation
Indices: 32911900--32912329 Score: 655
Period size: 181 Copynumber: 2.4 Consensus size: 181
32911890 TTTAATCTGC
* * * * *
32911900 TCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTAGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
* *
32911965 ATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTT-TCTATGATCTG
66 ATAAGACTTGTAATTACAACCTGCTCCACTACAACTTCAGAGAGATAAGGTTTGT-TATGATCTG
* *
32912029 TTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATTTGT
130 CTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGT
* * *
32912081 TCCACTGCAACTTTAGGAAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTAGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
** *
32912146 ATAAGACTTGTAATTACAACCTGCTCCACTACAACTTTGGAGAGATAAGGTTTGTTTTGATCTGC
66 ATAAGACTTGTAATTACAACCTGCTCCACTACAACTTCAGAGAGATAAGGTTTGTTATGATCTGC
*
32912211 TCTACTGCGACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGT
131 TCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGT
* * * * *
32912262 TCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGTTTCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTAGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
32912327 ATA
66 ATA
32912330 GGATCTACAA
Statistics
Matches: 225, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
181 224 1.00
182 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (181 bp):
TCCACTGCAACTTCAGGGAAATAAGATTAGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTTGTAATTACAACCTGCTCCACTACAACTTCAGAGAGATAAGGTTTGTTATGATCTGC
TCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGT
Found at i:32912150 original size:45 final size:43
Alignment explanation
Indices: 32911893--32912329 Score: 253
Period size: 45 Copynumber: 9.7 Consensus size: 43
32911883 TCGTCATTTT
* *
32911893 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G-TATCTTC
* * *
32911938 AGTCTGCTCCGCTGCAACTTTAGGGAGATAAGACTTGTAAT-TTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGT-ATCTTC
* * *
32911982 AACCTGCTCCACTGCAACTTCAGAGAGATAAGGTT-T-TCTAT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTATCT-TC
* * * *
32912023 GATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG-----TAT--CTTC
* * * * *
32912074 AATTTGTTCCACTGCAACTTTAGGAAAATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G-TATCTTC
* *
32912119 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAAT-TAC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGT-ATCTTC
* * * *
32912163 AACCTGCTCCACTACAACTT-TGGAGAGATAAGGTTTGT-T-TT-
1 AATCTGCTCCACTGCAACTTCAGG-GAGATAA-GATTGTATCTTC
* * * *
32912204 GATCTGCTCTACTGCGACTTCAGAGAGATAAGATCTGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG-----TAT--CTTC
* * * *
32912255 AATATGTTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-TATCTTC
* *
32912300 AATCTGTTTCACTGCAACTTCAGGGAGATA
1 AATCTGCTCCACTGCAACTTCAGGGAGATA
32912330 GGATCTACAA
Statistics
Matches: 301, Mismatches: 58, Indels: 66
0.71 0.14 0.16
Matches are distributed among these distances:
40 3 0.01
41 54 0.18
42 6 0.02
43 4 0.01
44 62 0.21
45 96 0.32
46 5 0.02
47 7 0.02
48 1 0.00
49 1 0.00
50 4 0.01
51 57 0.19
52 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTATCTTC
Found at i:32912342 original size:96 final size:95
Alignment explanation
Indices: 32912024--32912335 Score: 308
Period size: 96 Copynumber: 3.4 Consensus size: 95
32912014 GTTTTCTATG
*
32912024 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATTTGTTCCACTGC
1 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGTTCCACTGC
* *
32912089 AACTTTAGGAAAATAAGATTCGCTATCTTCA
66 AAC-TTAGGGAAATAAGATTTGCTATCTTCA
* * * * ** * *
32912120 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTAA--T-TA----CAACCTGCTCCACTA
1 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATC-TGTAATTTATAGCTTCAATATGTTCCACTG
* * * *
32912177 CAACTTTGGAGAGATAAGGTTTG-T-T-TT-G
65 CAACTTAGG-GAAATAAGATTTGCTATCTTCA
* * *
32912205 ATCTGCTCTACTGCGACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGTTCCACTGT
1 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGTTCCACTGC
32912270 AACTTCAGGGAAATAAGATTTGCTATCTTCA
66 AACTT-AGGGAAATAAGATTTGCTATCTTCA
* *
32912301 ATCTGTT-TCACTGCAACTTCAGGGAGATAGGATCT
1 ATCTGTTCT-ACTGCAACTTCAGAGAGATAAGATCT
32912336 ACAATTTTTA
Statistics
Matches: 169, Mismatches: 31, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
85 33 0.20
86 3 0.02
87 2 0.01
88 7 0.04
89 24 0.14
92 27 0.16
93 5 0.03
94 2 0.01
95 4 0.02
96 62 0.37
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (95 bp):
ATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATGTTCCACTGC
AACTTAGGGAAATAAGATTTGCTATCTTCA
Found at i:32919184 original size:16 final size:17
Alignment explanation
Indices: 32919157--32919188 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32919147 TTTTTAAATT
32919157 AAAATGATAAGAGGAGA
1 AAAATGATAAGAGGAGA
32919174 AAAATGA-AAGAGGAG
1 AAAATGATAAGAGGAG
32919189 TATATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.59, C:0.00, G:0.31, T:0.09
Consensus pattern (17 bp):
AAAATGATAAGAGGAGA
Found at i:32920648 original size:19 final size:19
Alignment explanation
Indices: 32920626--32920669 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
32920616 AAAATTTTAC
32920626 TTTT-TCTGAAAAATATAAT
1 TTTTATCTGAAAAATAT-AT
* *
32920645 TTTTATTTGAAAATTATAT
1 TTTTATCTGAAAAATATAT
32920664 TTTTAT
1 TTTTAT
32920670 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTTATCTGAAAAATATAT
Found at i:32920670 original size:19 final size:20
Alignment explanation
Indices: 32920632--32920671 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
32920622 TTACTTTTTC
32920632 TGAAAAATATAATTTTTATT
1 TGAAAAATATAATTTTTATT
*
32920652 TGAAAATTAT-ATTTTTATT
1 TGAAAAATATAATTTTTATT
32920671 T
1 T
32920672 TTAAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TGAAAAATATAATTTTTATT
Found at i:32923793 original size:65 final size:67
Alignment explanation
Indices: 32923665--32923804 Score: 180
Period size: 65 Copynumber: 2.1 Consensus size: 67
32923655 GGTTATTTTT
* ** *
32923665 GTTATT-TTATTAGTAAAATTAATTATTATTATTATTATTATATTTTCTTTTTGTATTTACTTAT
1 GTTATTATTATTACTAAAATTAATTATTATTATTACCACTATATTTTCTTTTTGTATTTACTTAT
32923729 AC
66 AC
*
32923731 GTTATTATTATTACT-AATTTAA-TATTATTATTACCACTATTATTTTCTTTTT-TATTTACTTA
1 GTTATTATTATTACTAAAATTAATTATTATTATTACCACTA-TATTTTCTTTTTGTATTTACTTA
**
32923793 TTG
65 TAC
32923796 GTTATTATT
1 GTTATTATT
32923805 TTCATATTAT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
65 34 0.52
66 24 0.37
67 7 0.11
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (67 bp):
GTTATTATTATTACTAAAATTAATTATTATTATTACCACTATATTTTCTTTTTGTATTTACTTAT
AC
Found at i:32924190 original size:22 final size:22
Alignment explanation
Indices: 32924130--32924197 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
32924120 TATTATTGTC
*
32924130 ATTCATATTAATGCC-TTTATT
1 ATTCATATTAATGCCATTTTTT
* **
32924151 ATT-ATTATTATTATCATTTTTT
1 ATTCA-TATTAATGCCATTTTTT
* *
32924173 ATTCATATTAGTGCCATTGTTT
1 ATTCATATTAATGCCATTTTTT
32924195 ATT
1 ATT
32924198 ATTTTATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
20 1 0.03
21 10 0.28
22 24 0.67
23 1 0.03
ACGTcount: A:0.26, C:0.10, G:0.06, T:0.57
Consensus pattern (22 bp):
ATTCATATTAATGCCATTTTTT
Found at i:32936079 original size:44 final size:45
Alignment explanation
Indices: 32936013--32936144 Score: 158
Period size: 44 Copynumber: 2.9 Consensus size: 45
32936003 AGTCATCATG
* * * *
32936013 GCGAGTCTTATCTCCCTAAAGTTGCAGTCGAGCAGATTAAAGCCA
1 GCGAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGACA
* * *
32936058 -CTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATA
1 GCGAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGACA
* * *
32936102 GCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAAGATTAAAG
1 GCGAGTCTTATCTCCCTGAAGTTGCAGTGGAAC-AGATTAAAG
32936145 TAATAAATAA
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
44 37 0.51
45 28 0.38
46 8 0.11
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (45 bp):
GCGAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGACA
Found at i:32936289 original size:44 final size:44
Alignment explanation
Indices: 32936204--32936314 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 44
32936194 ATCTACCATA
* ** * *
32936204 ACAAGTCTTATCTCCCTGAAGTTGTAGTGAAGCAGACTAAAATT
1 ACAAGTCTTATCTCCCTAAAGTTACAGCGAAGCAGACTAAAACT
* * * *
32936248 ACAAATCTTATATCCCTAAAGTTACAGCGAAGTAGATTAAAACT
1 ACAAGTCTTATCTCCCTAAAGTTACAGCGAAGCAGACTAAAACT
*
32936292 ACAAGTCTTATCTCTCTAAAGTT
1 ACAAGTCTTATCTCCCTAAAGTT
32936315 GCAGTGGAGT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31
Consensus pattern (44 bp):
ACAAGTCTTATCTCCCTAAAGTTACAGCGAAGCAGACTAAAACT
Found at i:32937641 original size:3 final size:3
Alignment explanation
Indices: 32937633--32937720 Score: 70
Period size: 3 Copynumber: 28.7 Consensus size: 3
32937623 TAATTAATTA
** * *
32937633 ATT ATT ATT ATT ATT AAC A-T ATC ATT ATT ATT CTT ATT AATGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -AT-T ATT
* * **
32937679 ATT ATT ACT ATTT ATT TTT ATT ACC ATT ATT ATT ATT ATT AT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32937721 ATTTTCTTTT
Statistics
Matches: 66, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
2 1 0.02
3 58 0.88
4 6 0.09
5 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:32937679 original size:20 final size:23
Alignment explanation
Indices: 32937633--32937719 Score: 75
Period size: 23 Copynumber: 3.7 Consensus size: 23
32937623 TAATTAATTA
32937633 ATTATTATTATTATTAACATATC
1 ATTATTATTATTATTAACATATC
* ** *
32937656 ATTATTATTCTTATTAATGTATT
1 ATTATTATTATTATTAACATATC
* *** *
32937679 ATTATTACTATTTATTTTTATTACC
1 ATTATTATTA-TTATTAACA-TATC
32937704 ATTATTATTATTATTA
1 ATTATTATTATTATTA
32937720 TATTTTCTTT
Statistics
Matches: 49, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
23 27 0.55
24 11 0.22
25 11 0.22
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (23 bp):
ATTATTATTATTATTAACATATC
Found at i:32942788 original size:52 final size:52
Alignment explanation
Indices: 32942649--32942806 Score: 273
Period size: 52 Copynumber: 3.1 Consensus size: 52
32942639 GAACCCAATT
*
32942649 ACATGTATCGCATCCATTATGAACTTGGACAAACTCAACGAGCTCGGATGCC
1 ACATGTATCGCATCCATTATGAACTCGGACAAACTCAACGAGCTCGGATGCC
* *
32942701 ACATGTATC-CATCCATTATGAACTCAGACCAACTCAACGAGCTCGGATGCC
1 ACATGTATCGCATCCATTATGAACTCGGACAAACTCAACGAGCTCGGATGCC
*
32942752 ACATGTATCGCATCCATTATGAACTCGGACTAACTCAACGAGCTCGGATGCC
1 ACATGTATCGCATCCATTATGAACTCGGACAAACTCAACGAGCTCGGATGCC
32942804 ACA
1 ACA
32942807 AACAATCATG
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
51 48 0.48
52 52 0.52
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (52 bp):
ACATGTATCGCATCCATTATGAACTCGGACAAACTCAACGAGCTCGGATGCC
Found at i:32943205 original size:24 final size:24
Alignment explanation
Indices: 32943172--32943217 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 24
32943162 TCATGTTTTT
32943172 CTTGATTTA-TAATGCCAAAATTTAA
1 CTTGATTTATTAAT--CAAAATTTAA
32943197 CTTG-TTTATTAATCAAAATTT
1 CTTGATTTATTAATCAAAATTT
32943218 TCAAATCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 8 0.40
24 4 0.20
25 8 0.40
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.46
Consensus pattern (24 bp):
CTTGATTTATTAATCAAAATTTAA
Found at i:32953311 original size:13 final size:13
Alignment explanation
Indices: 32953289--32953321 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32953279 GCCGTGTGTC
32953289 ACACACGGCCAAG
1 ACACACGGCCAAG
*
32953302 ACACATGGCCAAG
1 ACACACGGCCAAG
32953315 ACACACG
1 ACACACG
32953322 CTCGTGTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.36, G:0.21, T:0.03
Consensus pattern (13 bp):
ACACACGGCCAAG
Found at i:32961847 original size:53 final size:53
Alignment explanation
Indices: 32961767--32961871 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
32961757 ACAGCCCTTA
32961767 CCCGTACCCGAGACTGGGACCAGGTACGAGCCATTACTAGGCATGTACTCGGC
1 CCCGTACCCGAGACTGGGACCAGGTACGAGCCATTACTAGGCATGTACTCGGC
*
32961820 CCCGTCCCCGAGACTGGGACCAGGTACGAGCCATTACTAGGCATGTACTCGG
1 CCCGTACCCGAGACTGGGACCAGGTACGAGCCATTACTAGGCATGTACTCGG
32961872 ATATTTTCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (53 bp):
CCCGTACCCGAGACTGGGACCAGGTACGAGCCATTACTAGGCATGTACTCGGC
Found at i:32982912 original size:25 final size:25
Alignment explanation
Indices: 32982884--32982933 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
32982874 AATTTTCTTC
* **
32982884 TAAATTTTAATTTTATTTAATTATT
1 TAAATTTTAAATTTATCGAATTATT
32982909 TAAATTTTAAATTTATCGAATTATT
1 TAAATTTTAAATTTATCGAATTATT
32982934 AATAGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
TAAATTTTAAATTTATCGAATTATT
Found at i:32988797 original size:6 final size:6
Alignment explanation
Indices: 32988767--32988959 Score: 110
Period size: 6 Copynumber: 31.3 Consensus size: 6
32988757 AAGAAACATT
* * *
32988767 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAGA ATCA-A
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
32988814 GTGACAAA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * * *
32988865 ATCAGT ATCAGGTA A-CAAA ATCAGA ATCAGA ACCAGA ATTAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
** *
32988916 A-CAGA ATCAGA ATCATT ATCAGGTA A-CAGA ATCAGA ACCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
32988960 GTCAATGCAA
Statistics
Matches: 146, Mismatches: 24, Indels: 34
0.72 0.12 0.17
Matches are distributed among these distances:
5 11 0.08
6 115 0.79
7 12 0.08
8 8 0.05
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32988834 original size:31 final size:31
Alignment explanation
Indices: 32988794--32988903 Score: 114
Period size: 31 Copynumber: 3.5 Consensus size: 31
32988784 AATGAGAATT
*
32988794 AGAATCAGAATCAGAATCAAGTGACAAAATC
1 AGAATCAGAATCAGAATCAAGTAACAAAATC
* * * ***
32988825 AAAATCAGAATCAGAATCAGAATTAGGTAA-C
1 AGAATCAGAATCAGAATCA-AGTAACAAAATC
* *
32988856 AGAATCAGAATCAGTATCAGGTAACAAAATC
1 AGAATCAGAATCAGAATCAAGTAACAAAATC
*
32988887 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
32988904 TAGAATTAGG
Statistics
Matches: 61, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
30 4 0.07
31 52 0.85
32 5 0.08
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAGTAACAAAATC
Found at i:32988835 original size:37 final size:37
Alignment explanation
Indices: 32988794--32988875 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
32988784 AATGAGAATT
*
32988794 AGAATCAGAATCAGAATCAAGTGACAAAATCAAAATC
1 AGAATCAGAATCAGAATCAAGTAACAAAATCAAAATC
* * * *
32988831 AGAATCAGAATCAGAATTAGGTAACAGAATCAGAATC
1 AGAATCAGAATCAGAATCAAGTAACAAAATCAAAATC
*
32988868 AGTATCAG
1 AGAATCAG
32988876 GTAACAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAAGTAACAAAATCAAAATC
Found at i:32988858 original size:25 final size:25
Alignment explanation
Indices: 32988830--32988896 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
32988820 AAATCAAAAT
*
32988830 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
32988855 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
32988880 CAAAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
32988897 CCAGAATTAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:32988860 original size:19 final size:19
Alignment explanation
Indices: 32988836--32988928 Score: 82
Period size: 19 Copynumber: 4.6 Consensus size: 19
32988826 AAATCAGAAT
32988836 CAGAATCAGAATTAGGTAA
1 CAGAATCAGAATTAGGTAA
32988855 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG-A--A-T-T-AGGTAA
* *
32988880 CAAAATCAGAATCA-G-AA
1 CAGAATCAGAATTAGGTAA
*
32988897 CCAGAATTAGAATTAGGTAA
1 -CAGAATCAGAATTAGGTAA
32988917 CAGAATCAGAAT
1 CAGAATCAGAAT
32988929 CATTATCAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
17 2 0.03
18 12 0.20
19 22 0.37
20 3 0.05
21 1 0.02
22 2 0.03
23 1 0.02
24 2 0.03
25 14 0.24
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATTAGGTAA
Found at i:32988869 original size:62 final size:62
Alignment explanation
Indices: 32988794--32988958 Score: 222
Period size: 62 Copynumber: 2.7 Consensus size: 62
32988784 AATGAGAATT
* *
32988794 AGAATCAGAATCAGAATCAAGTGACAAAATCAAAATCAGAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAAGTAACAAAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
* * * *
32988856 AGAATCAGAATCAGTATCAGGTAACAAAATCAGAATCAGAACCAGAATTAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAAGTAACAAAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
** * * * *
32988918 AGAATCAGAATCATTATCAGGTAACAGAATCAGAACCAGAA
1 AGAATCAGAATCAGAATCAAGTAACAAAATCAAAATCAGAA
32988959 TGTCAATGCA
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 94 1.00
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (62 bp):
AGAATCAGAATCAGAATCAAGTAACAAAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:32988896 original size:37 final size:37
Alignment explanation
Indices: 32988855--32988930 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
32988845 AATTAGGTAA
* *
32988855 CAGAATCAGAATCAGTATCAGGTAACAAAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAAAATCAGAAT
* * *
32988892 CAGAACCAGAATTAGAATTAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAAAATCAGAAT
32988929 CA
1 CA
32988931 TTATCAGGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (37 bp):
CAGAACCAGAATCAGAATCAGGTAACAAAATCAGAAT
Found at i:32988926 original size:25 final size:25
Alignment explanation
Indices: 32988794--32988959 Score: 96
Period size: 25 Copynumber: 6.7 Consensus size: 25
32988784 AATGAGAATT
* *
32988794 AGAATCAGAATCAGAATCAAGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
32988819 AAAATCAAAATCAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCAGGTAA-C
*
32988843 AGAATTAGGTAA-CAGAATCA-G-AATC
1 AGAATCA-G-AATCAGAATCAGGTAA-C
* *
32988868 AGTATCAGGTAA-CAAAATCA-G-AATC
1 AGAATCA-G-AATCAGAATCAGGTAA-C
* * *
32988893 AGAACCAGAATTAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
**
32988918 AGAATCAGAATCATTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
32988943 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
32988960 GTCAATGCAA
Statistics
Matches: 113, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
23 3 0.03
24 13 0.12
25 93 0.82
26 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:32989126 original size:27 final size:26
Alignment explanation
Indices: 32989078--32989137 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
32989068 GCGAGGCTGC
*
32989078 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
32989105 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
32989131 CAGATAT
1 CAGATAT
32989138 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32989459 original size:27 final size:27
Alignment explanation
Indices: 32989404--32989623 Score: 232
Period size: 27 Copynumber: 8.2 Consensus size: 27
32989394 GGGTAAAATG
* * *
32989404 GTAATTTTACCCCACA-AGGTATCTT-A
1 GTAATTCTACCCTACAGGGGTAT-TTCA
* * *
32989430 GTAATTCTACCTTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
32989457 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
32989484 GTATTTCTACCCTA-AAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
32989510 GTAATTATACCCTACAGGGGTAGTTT-A
1 GTAATTCTACCCTACAGGGGTA-TTTCA
* * **
32989537 GTAATTATACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
32989564 GTATTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
32989591 GTATTTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
32989618 GTAATT
1 GTAATT
32989624 TTATAAATTG
Statistics
Matches: 166, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
26 41 0.25
27 122 0.73
28 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:32989526 original size:80 final size:81
Alignment explanation
Indices: 32989430--32989623 Score: 291
Period size: 80 Copynumber: 2.4 Consensus size: 81
32989420 AGGTATCTTA
* * *
32989430 GTAATTCTACCTTACAGGAGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATTATACCCTACAGGGGTATTTCGGTATTTCTACC
32989495 CTA-AAGGGTATTTCG
66 CTACAAGGGTATTTCG
* * * *
32989510 GTAATTATACCCTACAGGGGTAGTTTAGTAATTATACCCTATAGGGGTATTTTGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATTATACCCTACAGGGGTATTTCGGTATTTCTACC
*
32989575 CTACAGGGGTATTTCG
66 CTACAAGGGTATTTCG
* *
32989591 GTATTTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATT
32989624 TTATAAATTG
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
80 61 0.60
81 40 0.40
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTTAGTAATTATACCCTACAGGGGTATTTCGGTATTTCTACC
CTACAAGGGTATTTCG
Found at i:32989574 original size:107 final size:108
Alignment explanation
Indices: 32989427--32989623 Score: 315
Period size: 107 Copynumber: 1.8 Consensus size: 108
32989417 ACAAGGTATC
* *
32989427 TTAGTAATTCTACCTTACAGGAGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
1 TTAGTAATTATACCCTACAGGAGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
*
32989492 ACCCTA-AAGGGTATTTCGGTAATTATACCCTACAGGGGTAGT
66 ACCCTACAAGGGTATTTCAGTAATTATACCCTACAGGGGTAGT
* * * *
32989534 TTAGTAATTATACCCTATAGGGGTATTTTGGTATTTCTACCCTACAGGGGTATTTCGGTATTTCT
1 TTAGTAATTATACCCTACAGGAGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
*
32989599 ACCCTACAGGGGTATTTCAGTAATT
66 ACCCTACAAGGGTATTTCAGTAATT
32989624 TTATAAATTG
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
107 65 0.80
108 16 0.20
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (108 bp):
TTAGTAATTATACCCTACAGGAGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
ACCCTACAAGGGTATTTCAGTAATTATACCCTACAGGGGTAGT
Found at i:32990819 original size:54 final size:54
Alignment explanation
Indices: 32989716--32990812 Score: 1510
Period size: 54 Copynumber: 20.3 Consensus size: 54
32989706 TACAAGTTGA
* * ** * *
32989716 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTAGAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* *
32989770 GGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* * * *
32989824 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* * * *
32989878 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* * *** *
32989932 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* * *
32989986 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* ** *
32990040 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* * ** *
32990094 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
*
32990148 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
*** *
32990202 GGGTATTTTGGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* *** *
32990256 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
*
32990310 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
*** *
32990364 GGGTATTTTGGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* *** *
32990418 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
*
32990472 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
*** *
32990526 GGGTATTTTGGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
** * *
32990580 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
*** *
32990634 GGGTATTTTGGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
** * *
32990688 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
* * * * *
32990742 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
32990796 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
32990813 GGTAAACTAA
Statistics
Matches: 945, Mismatches: 98, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 945 1.00
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
Found at i:32990821 original size:81 final size:81
Alignment explanation
Indices: 32989644--32990812 Score: 1613
Period size: 81 Copynumber: 14.4 Consensus size: 81
32989634 AGGGTTAAAC
* * * ** ***
32989644 GGTAATTCTGTAAATCAAGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTA
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTA
* *
32989708 C-AAGTTGAGGGTATTTT
65 CAAACTAG-GGGTATTTT
* *** ** * * * *
32989725 AGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTGATAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
*
32989790 AAACCAGGGGTATTTT
66 AAACTAGGGGTATTTT
** * * * * * *
32989806 GGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
*
32989871 AAACCAGGGGTATTTT
66 AAACTAGGGGTATTTT
** * * * * * *
32989887 GGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
32989952 AAACTAGGGGTATTTT
66 AAACTAGGGGTATTTT
* * *
32989968 GGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTAT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
* *
32990033 AAACCAAGGGTATTTT
66 AAACTAGGGGTATTTT
* ** * ** *
32990049 AGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
32990114 AAACTAGGGGTATTTT
66 AAACTAGGGGTATTTT
*
32990130 GGTGATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
32990195 AAACTAGGGGTATTTT
66 AAACTAGGGGTATTTT
*
32990211 GGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
32990276 AAACTAGGGGTATTTT
66 AAACTAGGGGTATTTT
*
32990292 GGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
32990357 AAACTAGGGGTATTTT
66 AAACTAGGGGTATTTT
*
32990373 GGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
32990438 AAACTAGGGGTATTTT
66 AAACTAGGGGTATTTT
*
32990454 GGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
32990519 AAACTAGGGGTATTTT
66 AAACTAGGGGTATTTT
* **
32990535 GGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
* *
32990600 AAACCAAGGGTATTTT
66 AAACTAGGGGTATTTT
** * * *** *
32990616 GGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTAC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
*
32990681 AAACCAGGGGTATTTT
66 AAACTAGGGGTATTTT
* * *
32990697 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTAT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
* *
32990762 AAACCAAGGGTATTTT
66 AAACTAGGGGTATTTT
* **
32990778 AGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
32990813 GGTAAACTAA
Statistics
Matches: 993, Mismatches: 93, Indels: 4
0.91 0.09 0.00
Matches are distributed among these distances:
81 989 1.00
82 4 0.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (81 bp):
GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
AAACTAGGGGTATTTT
Found at i:32992081 original size:10 final size:10
Alignment explanation
Indices: 32992033--32992083 Score: 75
Period size: 10 Copynumber: 5.1 Consensus size: 10
32992023 TATTAACATA
*
32992033 ATTAATTTTA
1 ATTAATTTTG
*
32992043 ATTAATTTTA
1 ATTAATTTTG
32992053 ATTAATTTTG
1 ATTAATTTTG
32992063 ATTAATTTTG
1 ATTAATTTTG
*
32992073 ATTATTTTTG
1 ATTAATTTTG
32992083 A
1 A
32992084 CAGATTTGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (10 bp):
ATTAATTTTG
Found at i:32996564 original size:7 final size:7
Alignment explanation
Indices: 32996550--32996589 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
32996540 ACATTTCTAT
32996550 TCATCCC
1 TCATCCC
*
32996557 TAATCCC
1 TCATCCC
*
32996564 TCATCAC
1 TCATCCC
32996571 TCATCCC
1 TCATCCC
32996578 TCATCCC
1 TCATCCC
32996585 TCATC
1 TCATC
32996590 ATTCATCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.20, C:0.50, G:0.00, T:0.30
Consensus pattern (7 bp):
TCATCCC
Found at i:32996576 original size:21 final size:21
Alignment explanation
Indices: 32996550--32996596 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
32996540 ACATTTCTAT
32996550 TCATCCCTAATCCCTCATCAC
1 TCATCCCTAATCCCTCATCAC
* *
32996571 TCATCCCTCATCCCTCATCAT
1 TCATCCCTAATCCCTCATCAC
32996592 TCATC
1 TCATC
32996597 ATTCTCTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.47, G:0.00, T:0.32
Consensus pattern (21 bp):
TCATCCCTAATCCCTCATCAC
Found at i:32998261 original size:48 final size:46
Alignment explanation
Indices: 32998190--32998365 Score: 176
Period size: 50 Copynumber: 3.7 Consensus size: 46
32998180 TGTGTGAGCT
32998190 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATACAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-ATATA-AAGCC
*
32998238 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATGTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC-A--TAT-AAAGCC
* * * * * *
32998288 AATGTAAGACCATGTTTGGGACATAGCATCGGCAT-GTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATAT-AAAGCC
** *
32998334 AGTGTAAGACCATGTCCAGGACATGGGATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
32998366 TATTTTACCC
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
46 36 0.33
48 35 0.32
49 1 0.01
50 37 0.34
51 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATATAAAGCC
Found at i:32998309 original size:50 final size:48
Alignment explanation
Indices: 32998185--32998365 Score: 217
Period size: 46 Copynumber: 3.8 Consensus size: 48
32998175 GGTTATGTGT
* *
32998185 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA-ATAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CATGTATGA
*
32998232 CAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CC-ATGTATGA
* * *
32998283 GAGCCAATGTAAGACCATGTTTGGGACATAGCATCGG--CATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATGTATGA
** *
32998329 GAGCCAGTGTAAGACCATGTCCAGGACATGGGATCGG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
32998366 TATTTTACCC
Statistics
Matches: 116, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
46 39 0.34
47 1 0.01
48 37 0.32
49 2 0.02
50 36 0.31
51 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATGTATGA
Found at i:33000550 original size:360 final size:360
Alignment explanation
Indices: 32999882--33000603 Score: 1293
Period size: 361 Copynumber: 2.0 Consensus size: 360
32999872 TTAATTAGAG
* * * * *
32999882 GTCCTTAAATAGTAATTTTCCCAATTTCTATTTTTATGGACAAAAATGGGCATGAATAGGAAAAA
1 GTCCTTAAATAGAAATTTGCCAAATTTCTATTTTTATGGACAAAAATGGGCATAAATAGAAAAAA
*
32999947 TTTGAAAGAAATGCCTTAAGGGTATTTTTGTCATTTAGTTAAGAAAAGAATAAAAAGGGAAAAAT
66 TTTGAAAGAAATGCCTTAAGGGTATTTTTGTCATTTAGTTAAGAAAAGAAAAAAAAGGGAAAAAT
33000012 AAGTCAAAAATTGTGTCCATCTTCCTCCTCCTTAGCTGAAATTCTCAAGGAGCCATAGCTAGTGT
131 AAGTCAAAAATTGTGTCCATCTTCCTCCTCCTTAGCTGAAATTCTCAAGGAGCCATAGCTAGTGT
* *
33000077 TTTGTTCATCCTTTCACGCTCGGGTTCTAAGTACACCCTAGGCCTGTTTTTAATGTTCGTTATGT
196 TTTGTTCATCCTTTCAAGCTCGGGTTCTAAGTACACCCTAGCCCTGTTTTTAATGTTCGTTATGT
33000142 TTTTGAGATCCTTGAAGCATGATCTAGCTATTTCTACCATTATTTTGAGCTAGGGTTCATGTTCA
261 TTTTGAGATCCTTGAAGCATGATCTAGCTATTTCTACCATTATTTTGAGCTA-GGTTCATGTTCA
*
33000207 AAAACTTACCCTTGTGTGACATGCATGTACTTTGGT
325 AAAACTTACCCATGTGTGACATGCATGTACTTTGGT
33000243 GTCCTTAAATAGAAATTTGCCAAATTTCTATTTTTATGGACAAAAATGGGCATAAATAGAAAAAA
1 GTCCTTAAATAGAAATTTGCCAAATTTCTATTTTTATGGACAAAAATGGGCATAAATAGAAAAAA
* *
33000308 TTTGAAAGAAATGCCTTAAGGGTATTTTTGTCATTTGGTTAATAAAAGAAAAAAAAGGGAAAAAT
66 TTTGAAAGAAATGCCTTAAGGGTATTTTTGTCATTTAGTTAAGAAAAGAAAAAAAAGGGAAAAAT
33000373 AAGTCAAAAATTGTGTCCATCTTCCTCC-CCTTAGCTGAAATTCTCAAGGAGCCATAGCTAGTGT
131 AAGTCAAAAATTGTGTCCATCTTCCTCCTCCTTAGCTGAAATTCTCAAGGAGCCATAGCTAGTGT
* *
33000437 TTTGTTCATCCTTTCAAGCTCGGGTTCTAAGTACACTCTAGCCCTGTTTTTAATGTTCTTTATGT
196 TTTGTTCATCCTTTCAAGCTCGGGTTCTAAGTACACCCTAGCCCTGTTTTTAATGTTCGTTATGT
* *
33000502 TTTTGAGATCCTTTAAGCATGATCTAGCTATTTCTACCATTGTTTTGAGCTAGGTTCATGTTCAA
261 TTTTGAGATCCTTGAAGCATGATCTAGCTATTTCTACCATTATTTTGAGCTAGGTTCATGTTCAA
33000567 AAACTTACCCATGTGTGACATGCATGTACTTTGGT
326 AAACTTACCCATGTGTGACATGCATGTACTTTGGT
33000602 GT
1 GT
33000604 TTAATGGAGG
Statistics
Matches: 346, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
359 49 0.14
360 147 0.42
361 150 0.43
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (360 bp):
GTCCTTAAATAGAAATTTGCCAAATTTCTATTTTTATGGACAAAAATGGGCATAAATAGAAAAAA
TTTGAAAGAAATGCCTTAAGGGTATTTTTGTCATTTAGTTAAGAAAAGAAAAAAAAGGGAAAAAT
AAGTCAAAAATTGTGTCCATCTTCCTCCTCCTTAGCTGAAATTCTCAAGGAGCCATAGCTAGTGT
TTTGTTCATCCTTTCAAGCTCGGGTTCTAAGTACACCCTAGCCCTGTTTTTAATGTTCGTTATGT
TTTTGAGATCCTTGAAGCATGATCTAGCTATTTCTACCATTATTTTGAGCTAGGTTCATGTTCAA
AAACTTACCCATGTGTGACATGCATGTACTTTGGT
Found at i:33000872 original size:30 final size:30
Alignment explanation
Indices: 33000814--33000872 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
33000804 TTTACAAGCC
* * *
33000814 TAGGGGCTAATTTGTAATTATGTGAAAGTT
1 TAGGGGCAAAATTGTAATTATGTCAAAGTT
* *
33000844 TAGGGGCAAAATTGTAATTTTTTCAAAGT
1 TAGGGGCAAAATTGTAATTATGTCAAAGT
33000873 ATGATTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTATGTCAAAGTT
Found at i:33001280 original size:48 final size:48
Alignment explanation
Indices: 33001216--33001351 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 48
33001206 GGTTATGTGT
* ** *
33001216 GATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCGTCGTTATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCGACACGA
* * *
33001264 GATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACACGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCGACACGA
* * * *
33001312 GATCCCATGTAAGGCCATATCTGGGATATGGCATTGGCAT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCAT
33001352 AGATATGAGA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCGACACGA
Found at i:33003299 original size:84 final size:84
Alignment explanation
Indices: 33003158--33003324 Score: 316
Period size: 84 Copynumber: 2.0 Consensus size: 84
33003148 GATGGGCAAA
*
33003158 ATATTTGTTGAAATTGATATTGGGTTATGGGATTTATTAAATAAAAGAAAAGAATGAAAATGTGA
1 ATATTTGTTGAAATTGATATTGGGTTATGGGATTTAATAAATAAAAGAAAAGAATGAAAATGTGA
33003223 TGAAAAAAAAAAGGGCTTT
66 TGAAAAAAAAAAGGGCTTT
33003242 ATATTTGTTGAAATTGATATTGGGTTATGGGATTTAATAAATAAAAGAAAAGAATGAAAATGTGA
1 ATATTTGTTGAAATTGATATTGGGTTATGGGATTTAATAAATAAAAGAAAAGAATGAAAATGTGA
*
33003307 TGAAAAAAAAAGGGGCTT
66 TGAAAAAAAAAAGGGCTT
33003325 CATTCTTGTC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.46, C:0.01, G:0.22, T:0.31
Consensus pattern (84 bp):
ATATTTGTTGAAATTGATATTGGGTTATGGGATTTAATAAATAAAAGAAAAGAATGAAAATGTGA
TGAAAAAAAAAAGGGCTTT
Found at i:33003651 original size:121 final size:121
Alignment explanation
Indices: 33003462--33003702 Score: 473
Period size: 121 Copynumber: 2.0 Consensus size: 121
33003452 TCATGGTTCT
33003462 TACTTAGACCATGCTAATTCTTTTTAAAAAACTTTGATGGATGGATGGACCATTTGGCTATGGCT
1 TACTTAGACCATGCTAATTCTTTTTAAAAAACTTTGATGGATGGATGGACCATTTGGCTATGGCT
33003527 ATTAAAGAAGGAATTTGATTATTTCCTTTAAGTTTTGATGGATAAAGAAACAAAAC
66 ATTAAAGAAGGAATTTGATTATTTCCTTTAAGTTTTGATGGATAAAGAAACAAAAC
*
33003583 TACTTAGACCATGCTAATTCTTTTTAAAAAACTTTGATGGATGGATGGACCATTTGGCTATGGTT
1 TACTTAGACCATGCTAATTCTTTTTAAAAAACTTTGATGGATGGATGGACCATTTGGCTATGGCT
33003648 ATTAAAGAAGGAATTTGATTATTTCCTTTAAGTTTTGATGGATAAAGAAACAAAA
66 ATTAAAGAAGGAATTTGATTATTTCCTTTAAGTTTTGATGGATAAAGAAACAAAA
33003703 GGTTGTTGAT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 119 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (121 bp):
TACTTAGACCATGCTAATTCTTTTTAAAAAACTTTGATGGATGGATGGACCATTTGGCTATGGCT
ATTAAAGAAGGAATTTGATTATTTCCTTTAAGTTTTGATGGATAAAGAAACAAAAC
Found at i:33004619 original size:28 final size:27
Alignment explanation
Indices: 33004562--33004713 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
33004552 TAAATTGTGC
* *
33004562 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33004589 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
33004617 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
33004644 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* * *
33004672 AGCAGTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
33004699 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33004714 GACTTAATAA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:33004627 original size:55 final size:55
Alignment explanation
Indices: 33004562--33004713 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
33004552 TAAATTGTGC
* *
33004562 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
33004617 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * * *
33004672 AGCAGTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
33004714 GACTTAATAA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:33012469 original size:113 final size:113
Alignment explanation
Indices: 33012290--33012515 Score: 443
Period size: 113 Copynumber: 2.0 Consensus size: 113
33012280 ATCCATGAAA
33012290 ATTTAGTAAGGTTGCATTCGGCAACTTGCTTGGAATTAAAAATTGATGTCTAAGCTTAGGTGATT
1 ATTTAGTAAGGTTGCATTCGGCAACTTGCTTGGAATTAAAAATTGATGTCTAAGCTTAGGTGATT
33012355 TCGATGATGATATATATATATATTCATAAGTATATTTAGTTGATTCGG
66 TCGATGATGATATATATATATATTCATAAGTATATTTAGTTGATTCGG
*
33012403 ATTTAGTAAGGTTGCATTCGGCAACTTGTTTGGAATTAAAAATTGATGTCTAAGCTTAGGTGATT
1 ATTTAGTAAGGTTGCATTCGGCAACTTGCTTGGAATTAAAAATTGATGTCTAAGCTTAGGTGATT
33012468 TCGATGATGATATATATATATATTCATAAGTATATTTAGTTGATTCGG
66 TCGATGATGATATATATATATATTCATAAGTATATTTAGTTGATTCGG
33012516 CTTTGGTAGT
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 112 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (113 bp):
ATTTAGTAAGGTTGCATTCGGCAACTTGCTTGGAATTAAAAATTGATGTCTAAGCTTAGGTGATT
TCGATGATGATATATATATATATTCATAAGTATATTTAGTTGATTCGG
Found at i:33012977 original size:27 final size:26
Alignment explanation
Indices: 33012946--33013123 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
33012936 TAAATTGTAC
33012946 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
33012973 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
33012999 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
33013027 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
33013055 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
33013082 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
33013109 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33013124 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:33013007 original size:54 final size:54
Alignment explanation
Indices: 33012946--33013123 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 54
33012936 TAAATTGTAC
* **
33012946 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* ** *
33013001 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATG-T
1 AGCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGA-GTTGAATATGAT
* * *
33013055 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
33013109 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33013124 GGCTCAATAT
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
54 60 0.57
55 45 0.43
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:33013062 original size:82 final size:81
Alignment explanation
Indices: 33012947--33013102 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
33012937 AAATTGTACA
* *
33012947 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33013011 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33013028 GCACTAAGTGTGCGAGGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA--TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
33013092 GTGCGAGTTGA
64 GTGCGAATTGA
33013103 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 15 0.23
82 48 0.73
83 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33013114 original size:82 final size:81
Alignment explanation
Indices: 33012943--33013123 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
33012933 GATTAAATTG
* *
33012943 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33013008 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33013024 TGCGGCACTAAGTGTGCGAGGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA--TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
33013087 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
33013106 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33013124 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 18 0.22
82 63 0.76
83 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33013134 original size:27 final size:27
Alignment explanation
Indices: 33013028--33013134 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
33013018 TGACCATGCG
* * * *
33013028 GCACTAAGTGTGCGAGGTTGACTATGTA
1 GCACTAAGTGTGCGA-GCTCAATATATA
** * * **
33013056 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
33013083 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
33013110 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
33013135 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:33014682 original size:51 final size:51
Alignment explanation
Indices: 33014643--33014787 Score: 204
Period size: 51 Copynumber: 2.8 Consensus size: 51
33014633 TGAAAGTAAA
*
33014643 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
1 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTAACGGAT
* * *
33014694 AGCT--TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AG-TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTAACGGAT
* *
33014745 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTATGTG
1 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTG
33014788 AACCAGTATC
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
50 2 0.02
51 79 0.95
52 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (51 bp):
AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTAACGGAT
Found at i:33015030 original size:38 final size:37
Alignment explanation
Indices: 33014988--33015060 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
33014978 ATGTGTGGTA
* *
33014988 TTGAATTGAATATTGACTTGAAAATGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TTGAAAATGAAAAAGTGAATT
*
33015026 TTGAATTGAATAGTGATTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTGAAAATGAAAAAGTGAA
33015061 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.44, C:0.01, G:0.23, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTGAAAATGAAAAAGTGAATT
Found at i:33018473 original size:50 final size:50
Alignment explanation
Indices: 33018349--33018591 Score: 276
Period size: 50 Copynumber: 4.9 Consensus size: 50
33018339 GAATATAACA
* * * * ** * * * *
33018349 TGCCAAAGCTATGTCCCAGATATAGTCTTACATGGGATGTTTCTTGT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * ** * *
33018398 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
*
33018448 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * *
33018498 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
*
33018548 TGCCAATGTCATGTCCCAGACATGGTCTTACATGGGA--TCTCATC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATC
33018592 CTCTTAATGT
Statistics
Matches: 169, Mismatches: 24, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
48 7 0.04
49 38 0.22
50 124 0.73
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:33038380 original size:25 final size:25
Alignment explanation
Indices: 33038349--33038415 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
33038339 GGATACACCA
33038349 CAGCTCGTATGAGCTTACCGATT-T
1 CAGCTCGTATGAGCTTACCGATTCT
** * *
33038373 GTGGCTCGTGA-GAGTTTACTGATTCT
1 -CAGCTCGT-ATGAGCTTACCGATTCT
33038399 CAGCTCGTATGAGCTTA
1 CAGCTCGTATGAGCTTA
33038416 TCAATTTATA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
24 1 0.03
25 29 0.91
26 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.34
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATTCT
Found at i:33038443 original size:50 final size:51
Alignment explanation
Indices: 33038349--33038462 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 51
33038339 GGATACACCA
* * * * * **
33038349 CAGCTCGTATGAGCTTACCGATTTGTGGCTCGTGAGAGTTTACTGATTC-T
1 CAGCTCGTATGAGCTTACCAATTTATAGCTCATAAGAGCATACTGATTCAT
*
33038399 CAGCTCGTATGAGCTTATCAATTTATAGCTCATAAGAGCATACTGATTCAT
1 CAGCTCGTATGAGCTTACCAATTTATAGCTCATAAGAGCATACTGATTCAT
*
33038450 -AGCTTGTATGAGC
1 CAGCTCGTATGAGC
33038463 ATACATGTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 53 0.98
51 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (51 bp):
CAGCTCGTATGAGCTTACCAATTTATAGCTCATAAGAGCATACTGATTCAT
Found at i:33050987 original size:43 final size:44
Alignment explanation
Indices: 33050939--33051025 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
33050929 TTATGTAAGA
33050939 AATATATTTAT-AAAAAAAAATTAATATGAAAAACAAATGAGGT
1 AATATATTTATAAAAAAAAAATTAATATGAAAAACAAATGAGGT
33050982 AATATATTTATAAAAAAAAAATTAATATGAAAAACAAATGAGGT
1 AATATATTTATAAAAAAAAAATTAATATGAAAAACAAATGAGGT
33051026 TTTGATTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 11 0.26
44 32 0.74
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (44 bp):
AATATATTTATAAAAAAAAAATTAATATGAAAAACAAATGAGGT
Found at i:33055321 original size:3 final size:3
Alignment explanation
Indices: 33055313--33055343 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
33055303 ACCTCCAGTC
33055313 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
33055344 CAACAACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:33056450 original size:18 final size:18
Alignment explanation
Indices: 33056427--33056462 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
33056417 AAACAAACCA
33056427 TTTGGTCATGGTGAACAT
1 TTTGGTCATGGTGAACAT
33056445 TTTGGTCATGGTGAACAT
1 TTTGGTCATGGTGAACAT
33056463 GTTGAGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.28, T:0.39
Consensus pattern (18 bp):
TTTGGTCATGGTGAACAT
Found at i:33070424 original size:36 final size:36
Alignment explanation
Indices: 33070380--33070451 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
33070370 ATTGTTTTTG
33070380 GGGTCGCTTGAATTAAATTAATTATAGAATTAATTT
1 GGGTCGCTTGAATTAAATTAATTATAGAATTAATTT
33070416 GGGTCGCTTGAATTAAATTAATTATAGAATTAATTT
1 GGGTCGCTTGAATTAAATTAATTATAGAATTAATTT
33070452 AATTCGGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.42
Consensus pattern (36 bp):
GGGTCGCTTGAATTAAATTAATTATAGAATTAATTT
Found at i:33071740 original size:50 final size:50
Alignment explanation
Indices: 33071679--33071820 Score: 230
Period size: 50 Copynumber: 2.8 Consensus size: 50
33071669 GATAATAACA
* *
33071679 TGCCAAAGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
33071729 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
33071779 TGCCAACGCCATGTCCCAAACATGGTCTTACACGGGAACTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
33071821 TTACCCAAAT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 86 1.00
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.23
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:33076267 original size:24 final size:24
Alignment explanation
Indices: 33076235--33076288 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
33076225 TTTTTCTTCA
*
33076235 GTTTCTCGATCTAAATCAACCTCG
1 GTTTCTCGAACTAAATCAACCTCG
33076259 GTTTCTCGAACTAAATCAACCTCG
1 GTTTCTCGAACTAAATCAACCTCG
33076283 GTTTCT
1 GTTTCT
33076289 TCAGTTAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (24 bp):
GTTTCTCGAACTAAATCAACCTCG
Found at i:33081012 original size:19 final size:19
Alignment explanation
Indices: 33080984--33081021 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
33080974 CAACAATCAC
33080984 AAAAACATAAAAATTACAA
1 AAAAACATAAAAATTACAA
*
33081003 AAAAATATAAAAATTACAA
1 AAAAACATAAAAATTACAA
33081022 GAAGCAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAAACATAAAAATTACAA
Found at i:33083695 original size:27 final size:26
Alignment explanation
Indices: 33083678--33083747 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
33083668 ATATTAAGTC
33083678 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
33083705 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
33083733 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
33083748 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:33083741 original size:28 final size:28
Alignment explanation
Indices: 33083678--33083775 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
33083668 ATATTAAGTC
*
33083678 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
33083705 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
33083733 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
33083762 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33083776 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33084985 original size:77 final size:71
Alignment explanation
Indices: 33084845--33084992 Score: 215
Period size: 77 Copynumber: 2.0 Consensus size: 71
33084835 TTTTCTTTCT
33084845 AGTTTCAGCAAAATGGGGGGGAACAACCACACACTTTTTTTTTTCATCATATTCCCTTTCATTAT
1 AGTTTCAGCAAAATGGGGGGGAACAACCACACACTTTTTTTTTTCATCATATTCCCTTTCATTAT
33084910 TTTATG
66 TTTATG
* * *
33084916 AGTTTCGGCCAAATGGGGGGGGGACAACCACACACTTTTTTTTTTGTTTTCATCATATTCCCTTT
1 AGTTTCAGCAAAAT-GGGGGGGAACAACCACACAC----TTTTTT-TTTTCATCATATTCCCTTT
33084981 CATTATTTTATG
60 CATTATTTTATG
33084993 CCCATGCTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
71 12 0.18
72 19 0.28
76 6 0.09
77 31 0.46
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.41
Consensus pattern (71 bp):
AGTTTCAGCAAAATGGGGGGGAACAACCACACACTTTTTTTTTTCATCATATTCCCTTTCATTAT
TTTATG
Found at i:33092193 original size:39 final size:40
Alignment explanation
Indices: 33092098--33092320 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
33092088 TTGAATGATG
*
33092098 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
33092136 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
33092177 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
33092216 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
33092255 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
33092294 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
33092321 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:33092284 original size:79 final size:81
Alignment explanation
Indices: 33092098--33092320 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
33092088 TTGAATGATG
* * *
33092098 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
33092159 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
33092177 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
33092239 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
33092255 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
33092319 TG
66 TG
33092321 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:33092342 original size:79 final size:79
Alignment explanation
Indices: 33092098--33092353 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
33092088 TTGAATGATG
* * * *
33092098 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
33092159 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
33092177 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
33092241 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
33092255 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
33092319 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
33092335 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33092354 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:33096934 original size:43 final size:42
Alignment explanation
Indices: 33096881--33096990 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
33096871 CATCGTGTAC
* *
33096881 GACCGTGTCTGGGACATAGGCCTCG-AT-TGAGATTTACGTATAA
1 GACCATGTCTGGGACATAGGCATCGTATCT--GATTT-CGTATAA
* * *
33096924 GACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAT
1 GACCATGTCTGGGACATAGGCATCGTATCTGATTTCGTATAA
* *
33096966 GACCATGTCTGGGATAGAGGCATCG
1 GACCATGTCTGGGACATAGGCATCG
33096991 ATATTGAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
42 27 0.47
43 27 0.47
44 2 0.04
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (42 bp):
GACCATGTCTGGGACATAGGCATCGTATCTGATTTCGTATAA
Found at i:33097010 original size:85 final size:85
Alignment explanation
Indices: 33096873--33097031 Score: 187
Period size: 85 Copynumber: 1.9 Consensus size: 85
33096863 GTCTGAGACA
* * * * * *
33096873 TCGTGTACGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTACGACCATGTCTGGGACAGAGGCATCGATTGAGATTTACATATAAGACCACGTCCGGGA
33096938 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * *
33096958 TCGTGTATGACCATGTCTGGGATAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCCGG
1 TCGTGTACGACCATGTCTGGGACAGAGGCATCG--ATTGAGATTTACATATAAGACCACGTCCGG
* *
33097021 GTCGTCGGCAT
64 GACATCGGCAT
33097032 TGTACTTGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
85 55 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (85 bp):
TCGTGTACGACCATGTCTGGGACAGAGGCATCGATTGAGATTTACATATAAGACCACGTCCGGGA
CATCGGCATCGTATCTGATT
Found at i:33100530 original size:27 final size:26
Alignment explanation
Indices: 33100474--33100530 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
33100464 CAACCTTAAC
* * *
33100474 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
33100500 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
33100527 CCTA
1 CCTA
33100531 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:33111233 original size:80 final size:79
Alignment explanation
Indices: 33111149--33111320 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
33111139 GGACTAAGAT
* *
33111149 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGATTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
33111213 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
33111229 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGATTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
33111294 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
33111308 CCGAAGGCATTTG
1 CCGAAGGCATTTG
33111321 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGATTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:33111306 original size:39 final size:39
Alignment explanation
Indices: 33111149--33111318 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 39
33111139 GGACTAAGAT
* * *
33111149 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
33111189 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
* *
33111229 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
33111269 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
33111308 CCGAAGGCATT
1 CCGAAGGCATT
33111319 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 37 0.32
40 74 0.64
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:33111338 original size:79 final size:80
Alignment explanation
Indices: 33111188--33111339 Score: 173
Period size: 79 Copynumber: 1.9 Consensus size: 80
33111178 CGGGTTAAGC
* * * ** * *
33111188 CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 CCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
33111253 AAATCCGGATTATGT
66 AAATCCGGATTATGT
* * * *
33111268 CCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-C
*
33111331 TATATCCGG
65 TAAATCCGG
33111340 TTAAATTCCG
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
78 1 0.02
79 50 0.85
80 8 0.14
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
AAATCCGGATTATGT
Found at i:33116964 original size:46 final size:47
Alignment explanation
Indices: 33116855--33116968 Score: 131
Period size: 50 Copynumber: 2.4 Consensus size: 47
33116845 TGTCTTCAAC
** * *
33116855 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * *
33116905 ATGGGCTTTCATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
33116951 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
33116969 CTTTTGTCCT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 26 0.47
50 29 0.53
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:33119959 original size:27 final size:26
Alignment explanation
Indices: 33119911--33119962 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
33119901 GCGAGGCTGC
*
33119911 CAGATATTTTGACGAAGTCACTAGAA
1 CAGATATTTTGACGAAGCCACTAGAA
* *
33119937 CAGATATATTTGGCGAGGCCACTAGA
1 CAGATAT-TTTGACGAAGCCACTAGA
33119963 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (26 bp):
CAGATATTTTGACGAAGCCACTAGAA
Found at i:33123034 original size:65 final size:65
Alignment explanation
Indices: 33122930--33123775 Score: 1683
Period size: 65 Copynumber: 13.0 Consensus size: 65
33122920 AGTCCCATGC
33122930 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33122995 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123060 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123125 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123190 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123255 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123320 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123385 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123450 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123515 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123580 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123645 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
*
33123710 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
33123775 A
1 A
33123776 ACCCTAGGGG
Statistics
Matches: 780, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 780 1.00
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
Found at i:33123834 original size:27 final size:26
Alignment explanation
Indices: 33123778--33123834 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
33123768 CAACCTTAAC
* * *
33123778 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
33123804 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
33123831 CCTA
1 CCTA
33123835 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:33125105 original size:13 final size:14
Alignment explanation
Indices: 33125087--33125116 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
33125077 GAAGAAAAAG
33125087 AAAAAATGAA-GAA
1 AAAAAATGAAGGAA
33125100 AAAAAATGAAGGAA
1 AAAAAATGAAGGAA
33125114 AAA
1 AAA
33125117 GAGAGGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.07
Consensus pattern (14 bp):
AAAAAATGAAGGAA
Found at i:33126307 original size:31 final size:31
Alignment explanation
Indices: 33126270--33126328 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
33126260 GACGAATTTG
33126270 ATATAATTCTGGGAATGGATTGGTTAACCCT
1 ATATAATTCTGGGAATGGATTGGTTAACCCT
33126301 ATATAATTCTGGGAATGGATTGGTTAAC
1 ATATAATTCTGGGAATGGATTGGTTAAC
33126329 ACTACACGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (31 bp):
ATATAATTCTGGGAATGGATTGGTTAACCCT
Found at i:33128721 original size:50 final size:50
Alignment explanation
Indices: 33128646--33129009 Score: 365
Period size: 50 Copynumber: 7.2 Consensus size: 50
33128636 ACCGAAGCTC
* * * * *
33128646 TCTGGTACGCATAGCAGCTTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
*
33128696 TCTGGTACACGTAGTAACCTGCACTTAGTACTACACATGTGACCTAACCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * * *
33128747 -C-GGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGCTA
1 TCTGG-TACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * * *
33128797 TCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* ** * *
33128847 TCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
33128897 TCAT-ATACACGTAGTAGCCTGGACTTAGTACTACACACGTGATCGAAGCTA
1 TC-TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* ** * * *
33128948 TCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
33128998 TCTGGTACACGT
1 TCTGGTACACGT
33129010 GACCTAAAAC
Statistics
Matches: 254, Mismatches: 53, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
49 2 0.01
50 172 0.68
51 78 0.31
52 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:33128890 original size:151 final size:151
Alignment explanation
Indices: 33128640--33129009 Score: 587
Period size: 151 Copynumber: 2.5 Consensus size: 151
33128630 CTTGTAACCG
* * *
33128640 AAGCTCTCTGGTACGCATAGCAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
** *
33128705 CGTAGTAACCTGCACTTAGTACTACACATGTGACCTAACCAACGGATACACATAGTAGCCTGCAC
66 CGTAGTAACCTGCACTTAGTACTACACACATGACCTAACCAACAGATACACATAGTAGCCTGCAC
33128770 TTAGTACTACACACGTGATCA
131 TTAGTACTACACACGTGATCA
* * *
33128791 AAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTAGTACA
1 AAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * * * * *
33128856 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCATCATATACACGTAGTAGCCTGGAC
66 CGTAGTAACCTGCACTTAGTACTACACACATGACCTAACCAACAGATACACATAGTAGCCTGCAC
*
33128921 TTAGTACTACACACGTGATCG
131 TTAGTACTACACACGTGATCA
*
33128942 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
33129007 CGT
66 CGT
33129010 GACCTAAAAC
Statistics
Matches: 199, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 199 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (151 bp):
AAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
CGTAGTAACCTGCACTTAGTACTACACACATGACCTAACCAACAGATACACATAGTAGCCTGCAC
TTAGTACTACACACGTGATCA
Found at i:33129008 original size:101 final size:100
Alignment explanation
Indices: 33128649--33129009 Score: 373
Period size: 101 Copynumber: 3.6 Consensus size: 100
33128639 GAAGCTCTCT
* * * * *
33128649 GGTACGCATAGCAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAAC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACGTAGTAGC
* * *
33128714 CTGCACTTAGTACTACACATGTGACCTAACCAACG
66 CTGCACTTAGTACTACACATGTGACCGAACTATCG
* * * * * * * *
33128749 GATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGCTATCGGGTACGCATAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCTGGTACACGTAGTAG
* * * * *
33128814 CCTACACTTAGTACTACACATGCGACCTAACAATCT
65 CCTGCACTTAGTACTACACATGTGACCGAACTATCG
* * ** * * *
33128850 AGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCATCAT-ATACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATC-TGGTACACGTAGTAG
* * *
33128914 CCTGGACTTAGTACTACACACGTGATCGAAGCTATCG
65 CCTGCACTTAGTACTACACATGTGACCGAA-CTATCG
** * *
33128951 GGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACGT
33129010 GACCTAAAAC
Statistics
Matches: 208, Mismatches: 49, Indels: 7
0.79 0.19 0.03
Matches are distributed among these distances:
100 75 0.36
101 133 0.64
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACATGTGACCGAACTATCG
Found at i:33129057 original size:151 final size:150
Alignment explanation
Indices: 33128638--33129059 Score: 423
Period size: 151 Copynumber: 2.8 Consensus size: 150
33128628 CCCTTGTAAC
* * *
33128638 CGAAGCTCTCTGGTACGCATAGCAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * * * *
33128703 CACGT-A-GTAACCTGCACTTAGTACTACACATGT-GACCTAACCAA-CGGATACACATAGTAGC
66 CACGTGACCTAAACT-CACTT-CTA-AACACATGTAG-CCTAA-CAATAGTATACACATAGTAGC
33128764 CTGCACTTAGTACTACACACGTGAT
126 CTGCACTTAGTACTACACACGTGAT
* * * *
33128789 CAAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTAGTA
1 CGAAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
** * * * * * * *
33128854 CACGTAGTAGCCTGCACTTAGTACTACACACATG-A-CCTATCCATCA-TATACACGTAGTAGCC
66 CACGT-G-A-CCTAAACTCACTTCTAAACACATGTAGCCTAACAAT-AGTATACACATAGTAGCC
*
33128916 TGGACTTAGTACTACACACGTGAT
127 TGCACTTAGTACTACACACGTGAT
*
33128940 CGAAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* *
33129005 CACGTGACCTAAAAC-CA-TTTTAAACACATAGTAGCCT-GCAAATAGTACTACACAT
66 CACGTGACCT-AAACTCACTTCTAAACACAT-GTAGCCTAAC-AATAGTA-TACACAT
33129060 GTGTTCTCAC
Statistics
Matches: 220, Mismatches: 36, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
147 9 0.04
148 5 0.02
149 6 0.03
150 10 0.05
151 175 0.80
153 7 0.03
154 3 0.01
155 2 0.01
156 3 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (150 bp):
CGAAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
CACGTGACCTAAACTCACTTCTAAACACATGTAGCCTAACAATAGTATACACATAGTAGCCTGCA
CTTAGTACTACACACGTGAT
Found at i:33132211 original size:30 final size:30
Alignment explanation
Indices: 33132177--33132264 Score: 99
Period size: 30 Copynumber: 2.9 Consensus size: 30
33132167 TGAGCTAAAA
*
33132177 TGAGCTAAGCTTTAGC-CCTTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCC-TAAGCTGAAGT
*
33132207 TGAGCTGAGATTATA-CTCCTAAGCTGAAGT
1 TGAGCTAAGATT-TAGCTCCTAAGCTGAAGT
* * *
33132237 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
1 TGAGCTAAGATTTAGCTCCTAAGCTGAA
33132265 TATAAGCTAG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
29 2 0.04
30 43 0.88
31 4 0.08
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCCTAAGCTGAAGT
Found at i:33134526 original size:12 final size:12
Alignment explanation
Indices: 33134486--33134541 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
33134476 GTTTCTTTTG
33134486 TTTCAATTTCTTT
1 TTTCAATTTC-TT
* *
33134499 CTCTTTAATCTCTT
1 -T-TTCAATTTCTT
33134513 TTTCAATTTCTT
1 TTTCAATTTCTT
*
33134525 TTTCAACTTCTT
1 TTTCAATTTCTT
33134537 TTTCA
1 TTTCA
33134542 CTCTCAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 25 0.69
13 1 0.03
14 3 0.08
15 7 0.19
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCAATTTCTT
Found at i:33134588 original size:30 final size:30
Alignment explanation
Indices: 33134533--33134599 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
33134523 TTTTTCAACT
* *
33134533 TCTTTTTCACTCTCAAATTTCTTTTCGTTC
1 TCTTTTTCAATCTCAAATTTCTTTTCATTC
* *
33134563 TCTTTTTCAATCTC-ATTTTCTTTTTCATTT
1 TCTTTTTCAATCTCAAATTTC-TTTTCATTC
33134593 TCTTTTT
1 TCTTTTT
33134600 GCTTTTCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 5 0.16
30 27 0.84
ACGTcount: A:0.12, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAATTTCTTTTCATTC
Found at i:33134599 original size:18 final size:18
Alignment explanation
Indices: 33134550--33134605 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
33134540 CACTCTCAAA
* *
33134550 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
33134567 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
33134585 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
33134604 TT
1 TT
33134606 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:33134606 original size:12 final size:12
Alignment explanation
Indices: 33134575--33134599 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33134565 TTTTTCAATC
33134575 TCATTTTCTTTT
1 TCATTTTCTTTT
33134587 TCATTTTCTTTT
1 TCATTTTCTTTT
33134599 T
1 T
33134600 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:33139022 original size:39 final size:39
Alignment explanation
Indices: 33138968--33139049 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
33138958 ATTACCAGCA
*
33138968 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
*
33139007 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
33139046 CCAG
1 CCAG
33139050 TGTCTTGCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
Found at i:33141506 original size:40 final size:39
Alignment explanation
Indices: 33141329--33141506 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 39
33141319 AAGCCAAGTA
* * * *
33141329 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATG
* * *
33141368 CCTTCGGGACATAGCCCGAATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
33141408 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
* * *
33141448 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
33141488 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33141507 TTATCATCCA
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 13 0.10
40 112 0.90
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
Found at i:33169753 original size:20 final size:20
Alignment explanation
Indices: 33169712--33169753 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
33169702 CTAAACCAAT
**
33169712 AACTTATGAAATTTTTGGAA
1 AACTTATGAAATTTTTACAA
33169732 AACTTA-GAAATTTTTTACAA
1 AACTTATGAAA-TTTTTACAA
33169752 AA
1 AA
33169754 TACAAGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (20 bp):
AACTTATGAAATTTTTACAA
Found at i:33176089 original size:19 final size:20
Alignment explanation
Indices: 33176064--33176107 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
33176054 CTGAAAACAC
33176064 ATTAAATTC-GCTAAGACAA
1 ATTAAATTCGGCTAAGACAA
*
33176083 CTTAAATTCGGCTAAGACAA
1 ATTAAATTCGGCTAAGACAA
33176103 ATTAA
1 ATTAA
33176108 TTCAAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.27
Consensus pattern (20 bp):
ATTAAATTCGGCTAAGACAA
Found at i:33176972 original size:14 final size:15
Alignment explanation
Indices: 33176953--33176982 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33176943 GTTTATTATA
33176953 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
33176967 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
33176982 T
1 T
33176983 CAAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:33178281 original size:15 final size:16
Alignment explanation
Indices: 33178256--33178285 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33178246 AAAGAAAAGT
33178256 GGTTGTATGAATGTAC
1 GGTTGTATGAATGTAC
33178272 GGTT-TATGAATGTA
1 GGTTGTATGAATGTA
33178286 GTAGTGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.03, G:0.30, T:0.40
Consensus pattern (16 bp):
GGTTGTATGAATGTAC
Found at i:33179025 original size:43 final size:42
Alignment explanation
Indices: 33178881--33179045 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
33178871 AATGTGATAT
* * * *
33178881 TCGGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA-AA-A-TA
* * *
33178924 TCGAGCTTCGGGCCTAGCAGGCTATAATACCGGTGAGATAATA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA-AAAATA
33178967 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAAAGATA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAAA-ATA
** * * *
33179010 TCGGGCTTCAAGCCTAGTAGTCGA-AATGCCGGTGAA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
33179046 TGAGTTCAGA
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
42 14 0.14
43 65 0.63
44 16 0.16
45 7 0.07
46 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (42 bp):
TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAAAATA
Found at i:33181616 original size:12 final size:13
Alignment explanation
Indices: 33181586--33181618 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
33181576 CTTTCATATG
*
33181586 CTCTTTTCTTTCA
1 CTCTTTTTTTTCA
33181599 CTCTTTTTTTTC-
1 CTCTTTTTTTTCA
33181611 CTCTTTTT
1 CTCTTTTT
33181619 CAATTTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (13 bp):
CTCTTTTTTTTCA
Found at i:33181653 original size:21 final size:21
Alignment explanation
Indices: 33181628--33181667 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33181618 TCAATTTCAA
*
33181628 TTTCATTTTCTTTCTCTTTTC
1 TTTCAATTTCTTTCTCTTTTC
*
33181649 TTTCAATTTCTTTTTCTTT
1 TTTCAATTTCTTTCTCTTT
33181668 CAATTCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTCAATTTCTTTCTCTTTTC
Found at i:33181678 original size:15 final size:16
Alignment explanation
Indices: 33181638--33181683 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
33181628 TTTCATTTTC
33181638 TTTCTCTTTTCTTTCAA
1 TTTCT-TTTTCTTTCAA
33181655 TTTCTTTTTCTTTCAA
1 TTTCTTTTTCTTTCAA
*
33181671 -TTCTTTTTTTTTC
1 TTTCTTTTTCTTTC
33181684 TCTCAATTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 12 0.43
16 11 0.39
17 5 0.18
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTCTTTTTCTTTCAA
Found at i:33181683 original size:19 final size:20
Alignment explanation
Indices: 33181659--33181697 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
33181649 TTTCAATTTC
*
33181659 TTTTTCTTTCAATT-CTTTT
1 TTTTTCTCTCAATTCCTTTT
33181678 TTTTTCTCTCAATTCCTTTT
1 TTTTTCTCTCAATTCCTTTT
33181698 ATTCTTTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTCTCTCAATTCCTTTT
Found at i:33181697 original size:16 final size:16
Alignment explanation
Indices: 33181644--33181683 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
33181634 TTTCTTTCTC
*
33181644 TTTTCTTTCAATTTCT
1 TTTTCTTTCAATTCCT
33181660 TTTTCTTTCAATT-CT
1 TTTTCTTTCAATTCCT
*
33181675 TTTTTTTTC
1 TTTTCTTTC
33181684 TCTCAATTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTCTTTCAATTCCT
Found at i:33181767 original size:37 final size:37
Alignment explanation
Indices: 33181726--33181805 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
33181716 TCCATTAACA
*
33181726 ACTCTTGCTTTTCTTTTTTCTAATTTCTTTTTCTCTC
1 ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
33181763 ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
1 ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
*
33181800 ATTCTT
1 ACTCTT
33181806 TCATTACAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.10, C:0.24, G:0.01, T:0.65
Consensus pattern (37 bp):
ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
Found at i:33184898 original size:43 final size:42
Alignment explanation
Indices: 33184827--33184927 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 42
33184817 GTTACTGAGG
*
33184827 TTTCATATAAGACCATATATAAGGTATGGCATCAGTATGTGA
1 TTTCATATAAGACCATATATAAGGTATGGCATCAGTAAGTGA
** * * *
33184869 TTTTTTTATAAGACCATATCT-GGGATATGGCATCGGTAAGTGA
1 -TTTCATATAAGACCATATATAAGG-TATGGCATCAGTAAGTGA
33184912 TTTCATATAAGACCAT
1 TTTCATATAAGACCAT
33184928 GTCAGAAACA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 16 0.33
43 33 0.67
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (42 bp):
TTTCATATAAGACCATATATAAGGTATGGCATCAGTAAGTGA
Found at i:33187935 original size:50 final size:50
Alignment explanation
Indices: 33187876--33188067 Score: 219
Period size: 50 Copynumber: 3.8 Consensus size: 50
33187866 CCATGGCTGT
* **
33187876 ATATGTGTGATCCCATGGAAGACCATACCTGGGACATGGCATTGGCATCA
1 ATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA
*
33187926 ATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
1 ATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-TCA
* * * * * *
33187977 TATTTATGCGATCCTATGTAAGACCATGTTTGGGACATGGCATTAGCATCA
1 -ATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA
* * *
33188028 ATATGTGAT-TTCGC--GTAAGACCATGTTTGGGACATGGCAT
1 ATATGTG-TGATCCCATGTAAGACCATGTCTGGGACATGGCAT
33188068 CGATATGAGA
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
48 26 0.21
50 51 0.42
51 4 0.03
52 41 0.34
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
ATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA
Found at i:33188005 original size:52 final size:50
Alignment explanation
Indices: 33187884--33188067 Score: 192
Period size: 52 Copynumber: 3.7 Consensus size: 50
33187874 GTATATGTGT
* ** * *
33187884 GATCCCATGGAAGACCATACCTGGGACATGGCATTGGCATCAATATGTGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATATGC
* *
33187934 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATTTATGC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-TCA-ATATATGC
* * * *
33187986 GATCCTATGTAAGACCATGTTTGGGACATGGCATTAGCATC-A-ATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATATGC
** ** *
33188034 GATTTCGCGTAAGACCATGTTTGGGACATGGCAT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCAT
33188068 CGATATGAGA
Statistics
Matches: 114, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
48 33 0.29
49 1 0.01
50 36 0.32
51 3 0.03
52 41 0.36
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATATGC
Done.