Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold8072.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5604
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Found at i:39 original size:31 final size:31
Alignment explanation
Indices: 1--564 Score: 1119
Period size: 31 Copynumber: 18.2 Consensus size: 31
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
32 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
63 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
94 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
125 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
156 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
187 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
218 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
249 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
280 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
311 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
342 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
373 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
404 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
435 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
466 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
497 CAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
*
528 CAGAATCAGAATTAGGTGACAGAACCAGAAT
1 CAGAATCAGAATTAGGTGACAGAATCAGAAT
559 CAGAAT
1 CAGAAT
565 GTGAATGCAA
Statistics
Matches: 532, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 532 1.00
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATTAGGTGACAGAATCAGAAT
Found at i:752 original size:27 final size:27
Alignment explanation
Indices: 682--755 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
672 AGCATGGCTG
* *
682 CCAGAAT-AGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
708 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
735 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
756 AACCCACATA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.05
26 4 0.10
27 31 0.77
28 3 0.08
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:762 original size:27 final size:27
Alignment explanation
Indices: 706--762 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
696 GTGACAGAGT
* * *
706 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
733 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
760 CAC
1 CAC
763 ATAACAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:970 original size:22 final size:22
Alignment explanation
Indices: 920--978 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
910 GTAAATACGT
920 TTGGCACAAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * * *
942 ATAGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
964 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
979 TAATAACGGG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:1079 original size:27 final size:26
Alignment explanation
Indices: 1040--1122 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
1030 TCGATTGGTC
* *
1040 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
*
1066 ATACAGATATTGTGGTAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
1093 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
1120 AAC
1 AAC
1123 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:1781 original size:27 final size:27
Alignment explanation
Indices: 1349--1773 Score: 616
Period size: 27 Copynumber: 15.7 Consensus size: 27
1339 GGTATCTTGA
* **
1349 TCTACCCTATAAGGGTATTTTAGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
1376 TCTACCCTATAGGGGTATTTCGGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
* **
1403 TCTACCCTATAAGGGTATTTTAGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
1430 TCTACCCTATAGGGGTATTTCGGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
* **
1457 TCTACCCTATAAGGGTATTTTAGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
1484 TCTACCCTATAGGGGTATTTCGGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
* **
1511 TCTACCCTATAAGGGTATTTTAGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
1538 TCTACCCTATAGGGGTATTTCGGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
* **
1565 TCTACCCTATAAGGGTATTTTAGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
1592 TCTACCCTATAGGGGTATTTCGGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
* *
1619 TCTACCCTACAGGGGTATTTCGGTATT
1 TCTACCCTATAGGGGTATTTCGGTAAT
* * *
1646 TCTACCCTACAAGGGTATTTCGATAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
**
1673 TCTACCCTACGGGGGTATTTCGGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
* **
1700 TCTACCCTATAAGGGTATTTTAGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
1727 TCTACCCTATAGGGGTATTTCGGTAAT
1 TCTACCCTATAGGGGTATTTCGGTAAT
*
1754 TCTACCCTACAGGGGTATTT
1 TCTACCCTATAGGGGTATTT
1774 TAGTAATTTC
Statistics
Matches: 354, Mismatches: 44, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 354 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (27 bp):
TCTACCCTATAGGGGTATTTCGGTAAT
Found at i:1820 original size:27 final size:27
Alignment explanation
Indices: 1790--2143 Score: 360
Period size: 27 Copynumber: 13.1 Consensus size: 27
1780 TTTCACAATT
*
1790 GAGGGTAAAATAGTAATTCCGTAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
* * *
1817 GAGGGTAAGACAGTAATTCTGCAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
1844 GAGGGTAAAATAGTAATTCTGTAAAAT-
1 GAGGGTAAAATAGTAATTCTGT-AAATC
* *
1871 AAGGGTAAAA-CGATAATTCTGTAAATC
1 GAGGGTAAAATAG-TAATTCTGTAAATC
* *
1898 AAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAATAGTAATTCTGTAAATC
* *
1924 TGAGGGTAAAA-CGATAATTCTGTAAATT
1 -GAGGGTAAAATAG-TAATTCTGTAAATC
* ** *
1952 GAGGGTAAAATAGTAATTTTACAAATT
1 GAGGGTAAAATAGTAATTCTGTAAATC
** *
1979 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
2006 GAGGGTAAAATAGTAATTCTGTAAA-C
1 GAGGGTAAAATAGTAATTCTGTAAATC
* *
2032 TGAGGGTAAAATGGTAATTCTGTAAATT
1 -GAGGGTAAAATAGTAATTCTGTAAATC
* * **
2060 GAGGGTAAAACAGTAATTTTAAAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
*
2087 GAGGGTAAAA-CGATAATTCTGTAAATC
1 GAGGGTAAAATAG-TAATTCTGTAAATC
* ** *
2114 GAGCGTAAAACGGTAATTCTGTCAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
2141 GAG
1 GAG
2144 AGTACTTTGG
Statistics
Matches: 275, Mismatches: 40, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
26 9 0.03
27 259 0.94
28 7 0.03
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATAGTAATTCTGTAAATC
Found at i:1861 original size:54 final size:54
Alignment explanation
Indices: 1790--2143 Score: 428
Period size: 54 Copynumber: 6.6 Consensus size: 54
1780 TTTCACAATT
* * *
1790 GAGGGTAAAATAGTAATTCCGTAAATCGAGGGTAAGAC-AGTAATTCTGCAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATC
*
1844 GAGGGTAAAATAGTAATTCTGTAAAAT-AAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTGT-AAATCGAGGGTAAAACGATAATTCTGTAAATC
* * *
1898 AAGGGTAAAATGGTAATTCTGTAAA-CTGAGGGTAAAACGATAATTCTGTAAATT
1 GAGGGTAAAATAGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTAAATC
* ** * * *
1952 GAGGGTAAAATAGTAATTTTACAAATTGAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATC
* * *
2006 GAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATT
1 GAGGGTAAAATAGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTAAATC
* * **
2060 GAGGGTAAAACAGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATC
* ** *
2114 GAGCGTAAAACGGTAATTCTGTCAATCGAG
1 GAGGGTAAAATAGTAATTCTGTAAATCGAG
2144 AGTACTTTGG
Statistics
Matches: 256, Mismatches: 37, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.01
54 247 0.96
55 6 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATC
Found at i:4168 original size:6 final size:6
Alignment explanation
Indices: 4157--4258 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
4147 AACCAAAATG
*
4157 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
4205 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
4254 AGAAT
1 AGAAT
4259 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:4172 original size:30 final size:29
Alignment explanation
Indices: 4136--4258 Score: 140
Period size: 30 Copynumber: 4.1 Consensus size: 29
4126 AAGAAACATT
* * *
4136 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
4166 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
4196 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
4226 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
4257 AT
1 AT
4259 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 55 0.68
31 25 0.31
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:4413 original size:27 final size:26
Alignment explanation
Indices: 4376--4441 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
4366 AGCATGGCTG
*
4376 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
4402 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
4429 CCAGAATCAGATA
1 CCAGAA-CAGATA
4442 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:4446 original size:27 final size:27
Alignment explanation
Indices: 4376--4449 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
4366 AGCATGGCTG
* *
4376 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
4402 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
4429 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
4450 AACTCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:4457 original size:27 final size:28
Alignment explanation
Indices: 4399--4457 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
4389 CGTGACAGAG
* *
4399 TCACCAGATACAGATATTGTGGCAGAGC
1 TCACCAGATACAGATAATGTGGCAGAAC
4427 -CACCAGA-ATCAGATAATGTGGCA-AAC
1 TCACCAGATA-CAGATAATGTGGCAGAAC
4453 TCACC
1 TCACC
4458 TAACAGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (28 bp):
TCACCAGATACAGATAATGTGGCAGAAC
Found at i:4805 original size:27 final size:26
Alignment explanation
Indices: 4760--4842 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
4750 TCGATCGGTC
* * *
4760 AACAGATATTATGATAGAGTCACTAG
1 AACAGATATTATGACAGAGCCACCAG
* *
4786 ACACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTATGACAGAGCCACCAG
* *
4813 AACAGATATTTATGGCATAGCCACCAG
1 AACAGATA-TTATGACAGAGCCACCAG
4840 AAC
1 AAC
4843 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
AACAGATATTATGACAGAGCCACCAG
Found at i:5183 original size:27 final size:27
Alignment explanation
Indices: 5061--5175 Score: 176
Period size: 27 Copynumber: 4.3 Consensus size: 27
5051 CCCACACAAA
*
5061 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
5088 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
5115 GGTATTTCGATAATTCTACCCTACGGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
5142 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
5169 GGTATTT
1 GGTATTT
5176 TAGTAATTTC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:5235 original size:27 final size:27
Alignment explanation
Indices: 5196--5604 Score: 385
Period size: 27 Copynumber: 15.1 Consensus size: 27
5186 ATAATTGAGA
*
5196 GTAAAATAGTAATTCTGTAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
*** * *
5223 GTAAAACAATAATTTTGTAAACCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
*** *
5250 GTAAACCAGTAATTCTATAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
* * **
5277 GTAAAACGGTAATTTTACAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
** *
5304 GTAAAACAGTAATTCTATAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
* * *
5331 GTAAAATAGTAATTTTGTAAA-CTGAAG
1 GTAAAATGGTAATTCTGTAAATC-GAGG
* *
5358 GTAAAACGATAATTCTGTAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
* *
5385 GTAAAATGGTAATCCTATAAA-CTGAGG
1 GTAAAATGGTAATTCTGTAAATC-GAGG
* * * *
5412 GTAAAACGATAATTTTGTAAATCAAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
* * ** **
5439 GTAAAATAGTAATTTTACAAATTAAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
*
5466 GTAAAACGGTAATTCTGTAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
* * *
5493 GTAAAATAGAAATTCTATAAA-CTGAGG
1 GTAAAATGGTAATTCTGTAAATC-GAGG
*
5520 GTAAAATGGTAATTTTGTAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
*
5547 GTAAAATGGTAATTTTAG-AAATCGAGG
1 GTAAAATGGTAATTCT-GTAAATCGAGG
*
5574 GTAAAATGATAATTCTGTAAATCGAGG
1 GTAAAATGGTAATTCTGTAAATCGAGG
5601 GTAA
1 GTAA
Statistics
Matches: 316, Mismatches: 58, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.01
27 308 0.97
28 4 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (27 bp):
GTAAAATGGTAATTCTGTAAATCGAGG
Found at i:5264 original size:54 final size:54
Alignment explanation
Indices: 5176--5604 Score: 474
Period size: 54 Copynumber: 8.0 Consensus size: 54
5166 AGGGGTATTT
* * * *
5176 TAGTAATTTCAT-AATTGAGAGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTTTATAAACTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
* * * * * *
5229 CAATAATTTTGTAAACCGAGGGTAAACCAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTTTATAAACTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
** * *
5283 CGGTAATTTTACAAA-TCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTTTATAAACT-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
* *
5337 TAGTAATTTTGTAAACTGAAGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTTTATAAACTGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAA
* ** * *
5391 TGGTAATCCTATAAACTGAGGGTAAAAC-GATAATTTTGTAAATCAAGGGTAAAA
1 TAGTAATTTTATAAACTGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAA
* * * *
5445 TAGTAATTTTACAAATTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTTTATAAACTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
* * ** *
5499 TAGAAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTTTATAAACTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
* * *
5553 TGGTAATTTTAGAAA-TCGAGGGTAAAA-TGATAATTCTGTAAATCGAGGGTAA
1 TAGTAATTTTATAAACT-GAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAA
Statistics
Matches: 319, Mismatches: 50, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
53 11 0.03
54 306 0.96
55 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
TAGTAATTTTATAAACTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
Done.