Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 101 of 185
Found at i:31930081 original size:25 final size:25
Alignment explanation
Indices: 31930053--31930275 Score: 142
Period size: 25 Copynumber: 9.1 Consensus size: 25
31930043 GACTCATCAC
* *
31930053 GTATCATCTAGAAGGCCTTTGTGGT
1 GTATCATCTGGAAAGCCTTTGTGGT
*
31930078 GTATCATCTGG-AAGACCTTTATGGCT
1 GTATCATCTGGAAAG-CCTTTGTGG-T
* * *
31930104 -AAT-ATGTGGAAAGCCTTTGTGGC
1 GTATCATCTGGAAAGCCTTTGTGGT
31930127 GTATCATCTGGAAAGCCTTTGTGG-
1 GTATCATCTGGAAAGCCTTTGTGGT
* ** * * * *
31930151 CTATTTTGTGGAAAGCTTTTGTAGC
1 GTATCATCTGGAAAGCCTTTGTGGT
* *
31930176 GTATCATCT-AAAAGGCATTTGTGG-
1 GTATCATCTGGAAA-GCCTTTGTGGT
*
31930200 CTA--ATCTGCAGAAAGCCTTTGTGGT
1 GTATCATCTG--GAAAGCCTTTGTGGT
*
31930225 GTATCAACTGGAAAGCCTTTGTGGCT
1 GTATCATCTGGAAAGCCTTTGTGG-T
* * *
31930251 -AAT-TTGTGGAAAGCCTTTGTGGT
1 GTATCATCTGGAAAGCCTTTGTGGT
31930274 GT
1 GT
31930276 GTTATTTGGA
Statistics
Matches: 151, Mismatches: 32, Indels: 31
0.71 0.15 0.14
Matches are distributed among these distances:
22 4 0.03
23 1 0.01
24 65 0.43
25 75 0.50
26 2 0.01
27 4 0.03
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (25 bp):
GTATCATCTGGAAAGCCTTTGTGGT
Found at i:31930120 original size:24 final size:24
Alignment explanation
Indices: 31930093--31930272 Score: 125
Period size: 24 Copynumber: 7.4 Consensus size: 24
31930083 ATCTGGAAGA
*
31930093 CCTTTATGGCTAATATGTGGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
*
31930117 CCTTTGTGGCGT-ATCATCTGGAAAG
1 CCTTTGTGGC-TAAT-ATGTGGAAAG
* *
31930142 CCTTTGTGGCTATTTTGTGGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
* * * *
31930166 CTTTTGTAGCGT-ATCATCT-AAAAGG
1 CCTTTGTGGC-TAAT-ATGTGGAAA-G
* * **
31930191 CATTTGTGGCTAATCTGCAGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
* **
31930215 CCTTTGTGG-TGTATCAACTGGAAAG
1 CCTTTGTGGCT-AAT-ATGTGGAAAG
*
31930240 CCTTTGTGGCTAATTTGTGGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
31930264 CCTTTGTGG
1 CCTTTGTGG
31930273 TGTGTTATTT
Statistics
Matches: 117, Mismatches: 28, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
23 1 0.01
24 61 0.52
25 54 0.46
26 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.35
Consensus pattern (24 bp):
CCTTTGTGGCTAATATGTGGAAAG
Found at i:31930288 original size:49 final size:49
Alignment explanation
Indices: 31930067--31930275 Score: 269
Period size: 49 Copynumber: 4.3 Consensus size: 49
31930057 CATCTAGAAG
* *
31930067 GCCTTTGTGGTGTATCATCTGG-AAGACCTTTATGGCTAATATGTGGAAA
1 GCCTTTGTGGTGTATCATCTGGAAAG-CCTTTGTGGCTAATTTGTGGAAA
* *
31930116 GCCTTTGTGGCGTATCATCTGGAAAGCCTTTGTGGCTATTTTGTGGAAA
1 GCCTTTGTGGTGTATCATCTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
* * * * * * **
31930165 GCTTTTGTAGCGTATCATCT-AAAAGGCATTTGTGGCTAATCTGCAGAAA
1 GCCTTTGTGGTGTATCATCTGGAAA-GCCTTTGTGGCTAATTTGTGGAAA
*
31930214 GCCTTTGTGGTGTATCAACTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
1 GCCTTTGTGGTGTATCATCTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
31930263 GCCTTTGTGGTGT
1 GCCTTTGTGGTGT
31930276 GTTATTTGGA
Statistics
Matches: 136, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.02
49 127 0.93
50 6 0.04
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.35
Consensus pattern (49 bp):
GCCTTTGTGGTGTATCATCTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
Found at i:31931593 original size:15 final size:15
Alignment explanation
Indices: 31931557--31931594 Score: 67
Period size: 16 Copynumber: 2.5 Consensus size: 15
31931547 GAAAAATTAC
31931557 TTAAAAAGGACCAAA
1 TTAAAAAGGACCAAA
31931572 TTGAAAAAGGACCAAA
1 TT-AAAAAGGACCAAA
31931588 TTAAAAA
1 TTAAAAA
31931595 AAAGTGCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.16
Consensus pattern (15 bp):
TTAAAAAGGACCAAA
Found at i:31931658 original size:13 final size:13
Alignment explanation
Indices: 31931636--31931669 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
31931626 ATCGAACTCG
31931636 TAAATA-TTTTTA
1 TAAATATTTTTTA
31931648 TAAATATTTTTTA
1 TAAATATTTTTTA
31931661 TAAATATTT
1 TAAATATTT
31931670 ACGAAGCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TAAATATTTTTTA
Found at i:31931904 original size:32 final size:35
Alignment explanation
Indices: 31931858--31931924 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 35
31931848 TATGTATATT
*
31931858 ATATGTAAATTTAATTTAT-A-TAT-TATATTATA
1 ATATGTAAATTTAATTGATAAGTATATATATTATA
31931890 ATATG-AAATCTTAATTGATAAGTATATATATTATA
1 ATATGTAAAT-TTAATTGATAAGTATATATATTATA
31931925 TAATAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 4 0.13
32 13 0.43
33 1 0.03
34 3 0.10
35 9 0.30
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (35 bp):
ATATGTAAATTTAATTGATAAGTATATATATTATA
Found at i:31935619 original size:22 final size:22
Alignment explanation
Indices: 31935591--31935709 Score: 116
Period size: 22 Copynumber: 5.4 Consensus size: 22
31935581 TACACCACAC
*
31935591 CAGTAGGCACCATAGTGTAAAT
1 CAGTAGGCACCATAGTGCAAAT
* *
31935613 CAGTAGGCACCAAAGTGC-AGT
1 CAGTAGGCACCATAGTGCAAAT
*
31935634 ACAGTAGGCACCATAGTACAAAT
1 -CAGTAGGCACCATAGTGCAAAT
* * *
31935657 CAGAAGGCACTATAGTACAGAA-
1 CAGTAGGCACCATAGTGCA-AAT
* * *
31935679 CAATAGACACCGTAGTGCAAAT
1 CAGTAGGCACCATAGTGCAAAT
31935701 CAGTAGGCA
1 CAGTAGGCA
31935710 TCGAATTGCA
Statistics
Matches: 77, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
21 4 0.05
22 69 0.90
23 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (22 bp):
CAGTAGGCACCATAGTGCAAAT
Found at i:31935657 original size:44 final size:44
Alignment explanation
Indices: 31935591--31935709 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 44
31935581 TACACCACAC
* * *
31935591 CAGTAGGCACCATAGTGTAAATCAGTAGGCACCAAAGTGCAGTA
1 CAGTAGGCACCATAGTGCAAATCAGTAGGCACCAAAGTACAGAA
* * * *
31935635 CAGTAGGCACCATAGTACAAATCAGAAGGCACTATAGTACAGAA
1 CAGTAGGCACCATAGTGCAAATCAGTAGGCACCAAAGTACAGAA
* * *
31935679 CAATAGACACCGTAGTGCAAATCAGTAGGCA
1 CAGTAGGCACCATAGTGCAAATCAGTAGGCA
31935710 TCGAATTGCA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (44 bp):
CAGTAGGCACCATAGTGCAAATCAGTAGGCACCAAAGTACAGAA
Found at i:31939335 original size:33 final size:34
Alignment explanation
Indices: 31939293--31939362 Score: 124
Period size: 33 Copynumber: 2.1 Consensus size: 34
31939283 TTCCACAAAC
31939293 AACTTTTAAAAATTGCAC-GTCTCTTTTTTTTAA
1 AACTTTTAAAAATTGCACGGTCTCTTTTTTTTAA
31939326 AACTTTTAAAAATTGCACGTGTCTCTTTTTTTTAA
1 AACTTTTAAAAATTGCACG-GTCTCTTTTTTTTAA
31939361 AA
1 AA
31939363 TATTTTACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 18 0.51
35 17 0.49
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.47
Consensus pattern (34 bp):
AACTTTTAAAAATTGCACGGTCTCTTTTTTTTAA
Found at i:31939527 original size:14 final size:13
Alignment explanation
Indices: 31939504--31939533 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
31939494 AACAATTACA
31939504 ATTTAGAAAATTT
1 ATTTAGAAAATTT
31939517 ATTTAAGAAAATTT
1 ATTT-AGAAAATTT
31939531 ATT
1 ATT
31939534 CAATATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (13 bp):
ATTTAGAAAATTT
Found at i:31941181 original size:19 final size:18
Alignment explanation
Indices: 31941159--31941203 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
31941149 CTATTTCCTA
*
31941159 AAATAAATATTATTTAATC
1 AAATAAATATT-CTTAATC
* *
31941178 AAATTAATATTCTTAATT
1 AAATAAATATTCTTAATC
31941196 AAATAAAT
1 AAATAAAT
31941204 TTTTCAACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATAAATATTCTTAATC
Found at i:31945361 original size:9 final size:9
Alignment explanation
Indices: 31945318--31945364 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 9
31945308 TAATATTTTA
31945318 TTTTTT-AT
1 TTTTTTAAT
31945326 TTTTTT-AT
1 TTTTTTAAT
31945334 TTTTTTAAT
1 TTTTTTAAT
* *
31945343 TTCATATAAT
1 TT-TTTTAAT
31945353 TTTTTTAAT
1 TTTTTTAAT
31945362 TTT
1 TTT
31945365 CTATTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
8 14 0.42
9 12 0.36
10 7 0.21
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:31945373 original size:19 final size:19
Alignment explanation
Indices: 31945318--31945375 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
31945308 TAATATTTTA
31945318 TTTTTT-ATTTT-T-TTAT
1 TTTTTTAATTTTCTATTAT
*
31945334 TTTTTTAA-TTTCATATAAT
1 TTTTTTAATTTTC-TATTAT
31945353 TTTTTTAATTTTCTATTAT
1 TTTTTTAATTTTCTATTAT
31945372 TTTT
1 TTTT
31945376 GAATAATTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 9 0.26
17 1 0.03
18 1 0.03
19 20 0.57
20 4 0.11
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTAATTTTCTATTAT
Found at i:31945413 original size:19 final size:19
Alignment explanation
Indices: 31945333--31945413 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 19
31945323 TATTTTTTTA
* *
31945333 TTTTTTTAATTTCATATAA
1 TTTTTTTAATTTTATATAT
*
31945352 TTTTTTTAATTTTCTATTAT
1 TTTTTTTAATTTTATA-TAT
**
31945372 TTTTGAATAATTTGTA-ATAT
1 TTTT-TTTAATTT-TATATAT
31945392 TTTTTTGTAATTTTATAT-T
1 TTTTTT-TAATTTTATATAT
31945411 TTT
1 TTT
31945414 CCATATTTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
19 20 0.41
20 21 0.43
21 7 0.14
22 1 0.02
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (19 bp):
TTTTTTTAATTTTATATAT
Found at i:31945429 original size:26 final size:27
Alignment explanation
Indices: 31945400--31945459 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
31945390 ATTTTTTTGT
* *
31945400 AATTTTATATTTTTCCATA-TTTTATA
1 AATTTTACACTTTTCCATATTTTTATA
* *
31945426 AATTTTGCACTTTTCTATATTTTTATA
1 AATTTTACACTTTTCCATATTTTTATA
31945453 ACATTTT
1 A-ATTTT
31945460 TAATAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 15 0.54
27 8 0.29
28 5 0.18
ACGTcount: A:0.28, C:0.10, G:0.02, T:0.60
Consensus pattern (27 bp):
AATTTTACACTTTTCCATATTTTTATA
Found at i:31945486 original size:17 final size:17
Alignment explanation
Indices: 31945455--31945521 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
31945445 TTTTTATAAC
* *
31945455 ATTTTTAATAATTTTCT
1 ATTTTTAATATTTTTCA
*
31945472 ATTTTTCATATTTTTACA
1 ATTTTTAATATTTTT-CA
**
31945490 ATTTTTTTTATTTTTCGTA
1 ATTTTTAATATTTTTC--A
*
31945509 ATTTATAATATTT
1 ATTTTTAATATTT
31945522 GTAATATTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
17 14 0.36
18 14 0.36
19 11 0.28
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.66
Consensus pattern (17 bp):
ATTTTTAATATTTTTCA
Found at i:31947926 original size:11 final size:11
Alignment explanation
Indices: 31947910--31947935 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
31947900 TTTATAAATA
31947910 AAAAATTCTTT
1 AAAAATTCTTT
31947921 AAAAATTCTTT
1 AAAAATTCTTT
31947932 AAAA
1 AAAA
31947936 TATTAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATTCTTT
Found at i:31947953 original size:9 final size:9
Alignment explanation
Indices: 31947883--31947965 Score: 59
Period size: 9 Copynumber: 9.2 Consensus size: 9
31947873 ACAAAAATTA
31947883 TTATAAAA-
1 TTATAAAAT
31947891 TTATAAAAT
1 TTATAAAAT
31947900 TT-TATAAA-
1 TTATA-AAAT
*
31947908 -TAAAAAAT
1 TTATAAAAT
*
31947916 TCTTTAAAAAT
1 T-TAT-AAAAT
*
31947927 TCTTTAAAAT
1 T-TATAAAAT
31947937 ATTA-AAAAT
1 -TTATAAAAT
31947946 TTATAAAAT
1 TTATAAAAT
31947955 TTATAAAAT
1 TTATAAAAT
31947964 TT
1 TT
31947966 TTTTGTTATT
Statistics
Matches: 62, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
7 4 0.06
8 14 0.23
9 26 0.42
10 7 0.11
11 11 0.18
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (9 bp):
TTATAAAAT
Found at i:31950846 original size:13 final size:13
Alignment explanation
Indices: 31950828--31950852 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31950818 ATATTATAAC
31950828 TATTTAAATAGTA
1 TATTTAAATAGTA
31950841 TATTTAAATAGT
1 TATTTAAATAGT
31950853 TATAATTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TATTTAAATAGTA
Found at i:31961065 original size:48 final size:49
Alignment explanation
Indices: 31960981--31961074 Score: 136
Period size: 48 Copynumber: 1.9 Consensus size: 49
31960971 GGGAATTCTA
* * *
31960981 TTGAATCCTTTATCGTTGCAAGATTAGGCTAACTTAGGTGTTTTTACTG
1 TTGAATCCGTTATCATTGCAAGATTAGGCTAACTTAGGCGTTTTTACTG
* *
31961030 TTGAATCCGTTATCATTGCGAG-TTAGGCTGACTTAGGCGTTTTTA
1 TTGAATCCGTTATCATTGCAAGATTAGGCTAACTTAGGCGTTTTTA
31961075 AGCAAAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 21 0.52
49 19 0.47
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.41
Consensus pattern (49 bp):
TTGAATCCGTTATCATTGCAAGATTAGGCTAACTTAGGCGTTTTTACTG
Found at i:31966612 original size:24 final size:24
Alignment explanation
Indices: 31966585--31966630 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
31966575 AAAATTAATA
31966585 AAATATTTTTAAAACTAATTTTTT
1 AAATATTTTTAAAACTAATTTTTT
* * *
31966609 AAATTTTTTTATAATTAATTTT
1 AAATATTTTTAAAACTAATTTT
31966631 AAATTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (24 bp):
AAATATTTTTAAAACTAATTTTTT
Found at i:31975511 original size:19 final size:19
Alignment explanation
Indices: 31975487--31975526 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
31975477 TTTTGCAATG
31975487 GGATTTTGTGAGAGTTTTA
1 GGATTTTGTGAGAGTTTTA
31975506 GGATTTTGTGAGAGTTTTA
1 GGATTTTGTGAGAGTTTTA
31975525 GG
1 GG
31975527 GAGAGTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (19 bp):
GGATTTTGTGAGAGTTTTA
Found at i:31980344 original size:57 final size:57
Alignment explanation
Indices: 31980225--31980342 Score: 166
Period size: 57 Copynumber: 2.1 Consensus size: 57
31980215 TCATTTTCAT
* *
31980225 TTTTCTTTTTCATTTTGGAAAAAACCATATTCATTTCCAAATGATTTCATTTCTCCA
1 TTTTCATTTTCATTTTGGAAAAAACCATAATCATTTCCAAATGATTTCATTTCTCCA
** *
31980282 TTTTCATTTTCATTTTGGAGGAAACCTTAATCATTTCCAAATG-TTTCTTATTTCTCCA
1 TTTTCATTTTCATTTTGGAAAAAACCATAATCATTTCCAAATGATTTC--ATTTCTCCA
31980340 TTT
1 TTT
31980343 CACCATTTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
56 4 0.07
57 38 0.70
58 12 0.22
ACGTcount: A:0.25, C:0.19, G:0.07, T:0.49
Consensus pattern (57 bp):
TTTTCATTTTCATTTTGGAAAAAACCATAATCATTTCCAAATGATTTCATTTCTCCA
Found at i:31986736 original size:40 final size:40
Alignment explanation
Indices: 31986638--31986900 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
31986628 TCCTCGTTCA
* * * * *
31986638 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
31986677 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
31986717 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
31986757 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
31986797 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
31986837 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
31986877 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
31986901 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:31994722 original size:40 final size:40
Alignment explanation
Indices: 31994624--31994886 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
31994614 TCCTCGTTCA
* * * * *
31994624 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
31994663 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
31994703 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
31994743 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
31994783 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
31994823 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
31994863 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
31994887 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:31997528 original size:12 final size:12
Alignment explanation
Indices: 31997511--31997540 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
31997501 TGAGGCTGTT
31997511 ACACGGCCTAGC
1 ACACGGCCTAGC
*
31997523 ACACGGCCTCGC
1 ACACGGCCTAGC
31997535 ACACGG
1 ACACGG
31997541 GCGTGTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.43, G:0.27, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:31999566 original size:19 final size:20
Alignment explanation
Indices: 31999540--31999594 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
31999530 AAAAAAAATT
31999540 AATA-AAAAATATTTTTAAA
1 AATATAAAAATATTTTTAAA
*
31999559 AAT-TAAAAAGTA--TTAAAA
1 AATATAAAAA-TATTTTTAAA
31999577 AATATAAAATATATTTTT
1 AATATAAAA-ATATTTTT
31999595 TATTAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
18 8 0.29
19 15 0.54
20 3 0.11
21 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AATATAAAAATATTTTTAAA
Found at i:32003468 original size:38 final size:39
Alignment explanation
Indices: 32003380--32003455 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
32003370 CTTGAAACCG
* *
32003380 AATT-TAATTATTTAATTTTTTATTTTTGAAGTAAATAA
1 AATTATAATTTTTTAATTTTTTATTTTTAAAGTAAATAA
*
32003418 AATTATAATTTTTTACTTTTTTA-TTTTAAAGTAAATAA
1 AATTATAATTTTTTAATTTTTTATTTTTAAAGTAAATAA
32003456 GGTTAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 18 0.53
39 16 0.47
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (39 bp):
AATTATAATTTTTTAATTTTTTATTTTTAAAGTAAATAA
Found at i:32006820 original size:32 final size:32
Alignment explanation
Indices: 32006783--32006846 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
32006773 CTACTAAGAC
32006783 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
1 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
32006815 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
1 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
32006847 TGTACTTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.38, G:0.06, T:0.34
Consensus pattern (32 bp):
ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
Found at i:32009094 original size:26 final size:26
Alignment explanation
Indices: 32009065--32009197 Score: 98
Period size: 26 Copynumber: 5.3 Consensus size: 26
32009055 TTTATTTTTT
32009065 TACCATTCCTGCGTGATACTCTATTC
1 TACCATTCCTGCGTGATACTCTATTC
* ** ** *
32009091 TACCATTTCAAC-T-ATTTTTCT-TTT
1 TACCATTCCTGCGTGA-TACTCTATTC
32009115 TACCATTCCTGCGTGATACTCTATTC
1 TACCATTCCTGCGTGATACTCTATTC
* ** ** *
32009141 TACCATTTCAAC-T-ATTTTTCT-TTT
1 TACCATTCCTGCGTGA-TACTCTATTC
32009165 TACCATTCCTGCGTGATACTCTATTC
1 TACCATTCCTGCGTGATACTCTATTC
32009191 TACCATT
1 TACCATT
32009198 TCAACTATTT
Statistics
Matches: 75, Mismatches: 24, Indels: 16
0.65 0.21 0.14
Matches are distributed among these distances:
24 24 0.32
25 20 0.27
26 31 0.41
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.46
Consensus pattern (26 bp):
TACCATTCCTGCGTGATACTCTATTC
Found at i:32009119 original size:50 final size:50
Alignment explanation
Indices: 32009061--32009214 Score: 308
Period size: 50 Copynumber: 3.1 Consensus size: 50
32009051 ATTCTTTATT
32009061 TTTTTACCATTCCTGCGTGATACTCTATTCTACCATTTCAACTATTTTTC
1 TTTTTACCATTCCTGCGTGATACTCTATTCTACCATTTCAACTATTTTTC
32009111 TTTTTACCATTCCTGCGTGATACTCTATTCTACCATTTCAACTATTTTTC
1 TTTTTACCATTCCTGCGTGATACTCTATTCTACCATTTCAACTATTTTTC
32009161 TTTTTACCATTCCTGCGTGATACTCTATTCTACCATTTCAACTATTTTTC
1 TTTTTACCATTCCTGCGTGATACTCTATTCTACCATTTCAACTATTTTTC
32009211 TTTT
1 TTTT
32009215 ACCTTCAATT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 104 1.00
ACGTcount: A:0.19, C:0.25, G:0.06, T:0.49
Consensus pattern (50 bp):
TTTTTACCATTCCTGCGTGATACTCTATTCTACCATTTCAACTATTTTTC
Found at i:32009121 original size:24 final size:24
Alignment explanation
Indices: 32009091--32009171 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
32009081 TACTCTATTC
32009091 TACCATTTCAACTATTTTTCTTTT
1 TACCATTTCAACTATTTTTCTTTT
* ** ** *
32009115 TACCATTCCTGCGTGA-TACTCTATTC
1 TACCATTTCAAC-T-ATTTTTCT-TTT
32009141 TACCATTTCAACTATTTTTCTTTT
1 TACCATTTCAACTATTTTTCTTTT
32009165 TACCATT
1 TACCATT
32009172 CCTGCGTGAT
Statistics
Matches: 41, Mismatches: 12, Indels: 8
0.67 0.20 0.13
Matches are distributed among these distances:
24 19 0.46
25 10 0.24
26 12 0.29
ACGTcount: A:0.21, C:0.25, G:0.04, T:0.51
Consensus pattern (24 bp):
TACCATTTCAACTATTTTTCTTTT
Found at i:32010115 original size:24 final size:24
Alignment explanation
Indices: 32010083--32010128 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
32010073 CTTGAAACCA
* * *
32010083 TTTCTACAGCTCTTTTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
32010107 TTTCCACAGCTCCTCTCTTCAC
1 TTTCCACAGCTCCTCTCTTCAC
32010129 TCTCTTCACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.13, C:0.41, G:0.04, T:0.41
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:32010170 original size:14 final size:14
Alignment explanation
Indices: 32010151--32010180 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32010141 ATTGATTGCA
32010151 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
32010165 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
32010179 GC
1 GC
32010181 TAGTTTTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:32010657 original size:27 final size:27
Alignment explanation
Indices: 32010619--32010676 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
32010609 AAAATTACAG
32010619 CCTTAACACCAATACAGTAGCATCTGA
1 CCTTAACACCAATACAGTAGCATCTGA
32010646 CCTTAACACCAATACAGTAGCATCTGA
1 CCTTAACACCAATACAGTAGCATCTGA
32010673 CCTT
1 CCTT
32010677 CAATGCTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.31, G:0.10, T:0.24
Consensus pattern (27 bp):
CCTTAACACCAATACAGTAGCATCTGA
Found at i:32012050 original size:17 final size:15
Alignment explanation
Indices: 32012016--32012058 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 15
32012006 AATGGCATGG
*
32012016 CATTTGTTTTTGAAA
1 CATTTGTTTTTCAAA
32012031 CATTTGTTTCATTCAAA
1 CATTTGTTT--TTCAAA
32012048 CATTTGTTTTT
1 CATTTGTTTTT
32012059 ATATATACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 11 0.44
17 14 0.56
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (15 bp):
CATTTGTTTTTCAAA
Found at i:32012989 original size:15 final size:15
Alignment explanation
Indices: 32012969--32012999 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32012959 AAAATATTAA
32012969 CATCATCAATCACAT
1 CATCATCAATCACAT
32012984 CATCATCAATCACAT
1 CATCATCAATCACAT
32012999 C
1 C
32013000 CTTGGCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (15 bp):
CATCATCAATCACAT
Found at i:32013184 original size:18 final size:18
Alignment explanation
Indices: 32013123--32013184 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 18
32013113 TCATTGCAAT
32013123 ATATGTAAAAACAATTTA
1 ATATGTAAAAACAATTTA
* * **
32013141 AAATATAAAAATTTATTAATA
1 ATATGTAAAAA-CAATT--TA
32013162 TATATGTAAAAACAATTTA
1 -ATATGTAAAAACAATTTA
32013181 ATAT
1 ATAT
32013185 ATGTAAAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 13 0.41
19 5 0.16
21 5 0.16
22 9 0.28
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.37
Consensus pattern (18 bp):
ATATGTAAAAACAATTTA
Found at i:32013184 original size:20 final size:20
Alignment explanation
Indices: 32013120--32013193 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
32013110 AAATCATTGC
32013120 AATATATGTAAAAACAATTT
1 AATATATGTAAAAACAATTT
* ** *
32013140 AA-A-ATATAAAAATTTATTA
1 AATATATGTAAAAA-CAATTT
32013159 ATATATATGTAAAAACAATTT
1 A-ATATATGTAAAAACAATTT
32013180 AATATATGTAAAAA
1 AATATATGTAAAAA
32013194 TAACTTTTCC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
18 8 0.19
19 5 0.12
20 16 0.38
21 5 0.12
22 8 0.19
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (20 bp):
AATATATGTAAAAACAATTT
Found at i:32013329 original size:14 final size:14
Alignment explanation
Indices: 32013306--32013343 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
32013296 ATATAAAAGT
32013306 AAAACATTTTCCAG
1 AAAACATTTTCCAG
* *
32013320 AAATCATTTTCCGG
1 AAAACATTTTCCAG
32013334 AAAACATTTT
1 AAAACATTTT
32013344 ACTGCCAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (14 bp):
AAAACATTTTCCAG
Found at i:32024579 original size:103 final size:104
Alignment explanation
Indices: 32024335--32024600 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
32024325 GTTGTACATA
** *
32024335 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
32024400 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
32024439 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
32024504 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
32024542 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
32024601 AATAACGGTT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:32026041 original size:23 final size:23
Alignment explanation
Indices: 32026015--32026069 Score: 85
Period size: 23 Copynumber: 2.3 Consensus size: 23
32026005 TGATTTTTAA
32026015 ATTTTAAATTATTTAGTGATAAT
1 ATTTTAAATTATTTAGTGATAAT
32026038 A-TTTAGAATTATTTAGTGATAAT
1 ATTTTA-AATTATTTAGTGATAAT
32026061 ATTTATAAA
1 ATTT-TAAA
32026070 AAATCTAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.14
23 19 0.66
24 4 0.14
25 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (23 bp):
ATTTTAAATTATTTAGTGATAAT
Found at i:32026042 original size:13 final size:13
Alignment explanation
Indices: 32026024--32026065 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
32026014 AATTTTAAAT
32026024 TATTTAGTGATAA
1 TATTTAGTGATAA
*
32026037 TATTTA--GA-AT
1 TATTTAGTGATAA
32026047 TATTTAGTGATAA
1 TATTTAGTGATAA
32026060 TATTTA
1 TATTTA
32026066 TAAAAAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:32027964 original size:58 final size:58
Alignment explanation
Indices: 32027850--32027963 Score: 162
Period size: 55 Copynumber: 2.0 Consensus size: 58
32027840 ACCTTTAAAA
* *
32027850 AACTGCCAATCGTTCTCTTTTTTATTATTATTTCTCCTCCTTCCCTTTTCTTTTTTTT
1 AACTGCCAATCATTCTCTTTTTTATTATTATTTCTCCTCCCTCCCTTTTCTTTTTTTT
**
32027908 AACTGCCAATCATTCTC-TTTTT-TT-TTATTTCTCCTCCCTCATTTTTCTCTTTTTTT
1 AACTGCCAATCATTCTCTTTTTTATTATTATTTCTCCTCCCTCCCTTTTCT-TTTTTTT
32027964 TATTGTGAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 21 0.41
56 9 0.18
57 5 0.10
58 16 0.31
ACGTcount: A:0.12, C:0.26, G:0.03, T:0.59
Consensus pattern (58 bp):
AACTGCCAATCATTCTCTTTTTTATTATTATTTCTCCTCCCTCCCTTTTCTTTTTTTT
Found at i:32028693 original size:45 final size:46
Alignment explanation
Indices: 32028502--32029245 Score: 422
Period size: 45 Copynumber: 16.8 Consensus size: 46
32028492 CTTGATCTAC
***
32028502 CAGTCTG-CTCCACTGCAACTTCAGGGAGATAAGA-TCTGAGGT-TT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACT-TGCCATCTT
* * * * ***
32028546 TAATCCG-CTCCACTGCAACTTCAGGGAGATAGGA-TCTGAGGT-TT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACT-TGCCATCTT
* * * * * **
32028590 TAATCCG-CTCCACTGCGACTTCAGGGAGA-AAGGA-TTGTCGGCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAA-GACTTGCCATCTT
* * * * *
32028634 TAATCTG-CTTCACTGCAACTTCAGGAAGATAAGATTTGCCATCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
**
32028679 CAGTCTGCCT-CACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTT
* * * **
32028725 -AGTCTG-CTCCACTGCAACTTTAGGGAGAT-AGAATTGTCGGCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
* * * *
32028768 TAATCTG-CTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
**
32028813 CAGTCTGCCT-CACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTT
* * * **
32028859 -AGTCTG-CTCCACTGCAACTTTAGGGAGAT-AGAATTGTCGGCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
* * * *
32028902 TAATCTG-CTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
**
32028947 CAGTCTGCCT-CACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTT
* *
32028993 -AGTCTG-CTCCACTGCAACTTCAGGGAGATAAGACTAG--A--TG
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
* ** * *
32029033 C-GATCT-ACT-TTCTGCAACTTCAGGGAGATAAGA-TCTGACGT-TT
1 CAG-TCTGCCTCCACTGCAACTTCAGGGAGATAAGACT-TGCCATCTT
* * * * * *
32029076 TAATC--CACTCCACTGTAACTTCAGGGAGATAGGA-TTGTCAGCTT
1 CAGTCTGC-CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
* * * *
32029120 TAATCTG-CTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
* * **
32029165 CAGCCTGCCT-CACTGCAACTTCA-GGAGGATAAGACTCGCTTTGC-T
1 CAGTCTGCCTCCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTT
* * * *
32029210 GAGTCTG-CTTCACTGCAACTTCAAGAAGATAAGACT
1 CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACT
32029246 AGATGCGATC
Statistics
Matches: 566, Mismatches: 92, Indels: 83
0.76 0.12 0.11
Matches are distributed among these distances:
39 1 0.00
40 25 0.04
41 5 0.01
43 18 0.03
44 237 0.42
45 251 0.44
46 29 0.05
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (46 bp):
CAGTCTGCCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTT
Found at i:32028769 original size:134 final size:134
Alignment explanation
Indices: 32028596--32029022 Score: 782
Period size: 134 Copynumber: 3.2 Consensus size: 134
32028586 GTTTTAATCC
* * * * * *
32028596 GCTCCACTGCGACTTCAGGGAGAAAGGATTGTCGGCTTTAATCTGCTTCACTGCAACTTCAGGAA
1 GCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
32028661 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
32028726 GTCT
131 GTCT
*
32028730 GCTCCACTGCAACTTTAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
32028795 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
32028860 GTCT
131 GTCT
*
32028864 GCTCCACTGCAACTTTAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
32028929 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
32028994 GTCT
131 GTCT
32028998 GCTCCACTGCAACTTCAGGGAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
32029023 AGACTAGATG
Statistics
Matches: 285, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
134 285 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (134 bp):
GCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
GTCT
Found at i:32029131 original size:218 final size:218
Alignment explanation
Indices: 32028865--32029327 Score: 773
Period size: 218 Copynumber: 2.1 Consensus size: 218
32028855 GCTTAGTCTG
* * *
32028865 CTCCACTGCAACTTTAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
* * *
32028930 ATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAG
66 ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
* * * * *
32028995 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTTTCTGCAACTTCAGGGAG
131 TCTGCTCCACTGCAACTTCAAGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAA
32029060 ATAAGATCTGACGTTTTAATCCA
196 ATAAGATCTGACGTTTTAATCCA
*
32029083 CTCCACTGTAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
32029148 ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
66 ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
* *
32029213 TCTGCTTCACTGCAACTTCAAGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAA
131 TCTGCTCCACTGCAACTTCAAGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAA
* *
32029278 ATAAGATCTGAGGTTTTAATCCG
196 ATAAGATCTGACGTTTTAATCCA
*
32029301 CTCCACTGCAACTTCAAGGAGATAGGA
1 CTCCACTGCAACTTCAGGGAGATAGGA
32029328 CTCAATTTAA
Statistics
Matches: 227, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
218 227 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (218 bp):
CTCCACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
TCTGCTCCACTGCAACTTCAAGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAA
ATAAGATCTGACGTTTTAATCCA
Found at i:32034722 original size:98 final size:98
Alignment explanation
Indices: 32034548--32034744 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
32034538 GTACAATAAA
*
32034548 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
32034613 CCTCTAGAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
*
32034646 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
32034711 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
32034744 A
1 A
32034745 TTATTTTTTA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:32035035 original size:15 final size:15
Alignment explanation
Indices: 32035017--32035049 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32035007 CAAATGCTAT
32035017 AATAATAAATACAAC
1 AATAATAAATACAAC
*
32035032 AATAATAAATACATC
1 AATAATAAATACAAC
32035047 AAT
1 AAT
32035050 GACATATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:32035631 original size:34 final size:34
Alignment explanation
Indices: 32035588--32035697 Score: 101
Period size: 34 Copynumber: 3.4 Consensus size: 34
32035578 CCAATCGTTC
32035588 TCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTT
1 TCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTT
* * ** * *
32035622 TCTTTTTTTTTTA--A--ACTGC-CAGT-CGTTC
1 TCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTT
32035650 TC-TTTTTTTTT-TTATTTCTCCTCCCTCCCTTT
1 TCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTT
32035682 TCTCTTTTTTTTTATT
1 TCT-TTTTTTTTTATT
32035698 GTGAAAATAG
Statistics
Matches: 55, Mismatches: 12, Indels: 17
0.65 0.14 0.20
Matches are distributed among these distances:
27 9 0.16
28 6 0.11
29 2 0.04
30 6 0.11
31 2 0.04
32 6 0.11
34 22 0.40
35 2 0.04
ACGTcount: A:0.07, C:0.25, G:0.03, T:0.65
Consensus pattern (34 bp):
TCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTT
Found at i:32035679 original size:60 final size:63
Alignment explanation
Indices: 32035572--32035695 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 63
32035562 CACCTTTAAA
32035572 AAACTGCCAATCGTTCTCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCT-TTTTTTTTT
1 AAACTGCCAATCGTTCTCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCTCTTTTTTTTT
*
32035634 AAACTGCCAGTCGTTCTC-TTTTTTTTT-TTATTTCTCCTCCCTCCCTTTTCTCTTTTTTTTT
1 AAACTGCCAATCGTTCTCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCTCTTTTTTTTT
32035695 A
1 A
32035696 TTGTGAAAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
60 24 0.40
61 19 0.32
62 17 0.28
ACGTcount: A:0.10, C:0.27, G:0.04, T:0.59
Consensus pattern (63 bp):
AAACTGCCAATCGTTCTCTTTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCTCTTTTTTTTT
Found at i:32035715 original size:60 final size:61
Alignment explanation
Indices: 32035591--32035716 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 61
32035581 ATCGTTCTCT
** * * **
32035591 TTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCTTTTTTTTTTAAACTGCCAGTCGTTCTC
1 TTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCTTTTTTTTTTAAACTGAAAATAGGGCTC
***
32035652 TTTTTTTTT-TTATTTCTCCTCCCTCCCTTTTCTCTTTTTTTTTATTGTGAAAATAGGGC-C
1 TTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCT-TTTTTTTTTAAACTGAAAATAGGGCTC
32035712 TTTTT
1 TTTTT
32035717 ATTGATTTCT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
60 30 0.55
61 25 0.45
ACGTcount: A:0.10, C:0.23, G:0.06, T:0.60
Consensus pattern (61 bp):
TTTTTTTTTATTATTTCTCCTCCCTCCCTTTTCTTTTTTTTTTAAACTGAAAATAGGGCTC
Found at i:32039987 original size:25 final size:25
Alignment explanation
Indices: 32039959--32040039 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
32039949 ATGCTCATAT
* * *
32039959 GAGCTATGAATCGGTATGTTCTCAC
1 GAGCTATGAATCAGTAAGCTCTCAC
32039984 GAGCTATGAATCAGTAAGCTCAT-AC
1 GAGCTATGAATCAGTAAGCTC-TCAC
* *
32040009 GAGCTAAGAATCAATAAGCTCTCAC
1 GAGCTATGAATCAGTAAGCTCTCAC
32040034 GAGCTA
1 GAGCTA
32040040 CAAATTGGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 1 0.02
25 47 0.96
26 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (25 bp):
GAGCTATGAATCAGTAAGCTCTCAC
Found at i:32040032 original size:50 final size:50
Alignment explanation
Indices: 32039951--32040063 Score: 136
Period size: 50 Copynumber: 2.3 Consensus size: 50
32039941 GTACATATAT
* ** * * **
32039951 GCTCATATGAGCTATGAATCGGTATGTTCTCACGAGCTATGAATCAGTAA
1 GCTCATATGAGCTAAGAATCAATAAGCTCTCACGAGCTACAAATCAGTAA
* **
32040001 GCTCATACGAGCTAAGAATCAATAAGCTCTCACGAGCTACAAATTGGTAA
1 GCTCATATGAGCTAAGAATCAATAAGCTCTCACGAGCTACAAATCAGTAA
32040051 GCTCATATGAGCT
1 GCTCATATGAGCT
32040064 GTGGTGTGTC
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (50 bp):
GCTCATATGAGCTAAGAATCAATAAGCTCTCACGAGCTACAAATCAGTAA
Found at i:32045797 original size:16 final size:16
Alignment explanation
Indices: 32045776--32045808 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
32045766 ACCCTTATTT
32045776 GTTTTTAATATGTAGC
1 GTTTTTAATATGTAGC
32045792 GTTTTTAATATGTAGC
1 GTTTTTAATATGTAGC
32045808 G
1 G
32045809 AAGGTCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.48
Consensus pattern (16 bp):
GTTTTTAATATGTAGC
Found at i:32045958 original size:34 final size:34
Alignment explanation
Indices: 32045915--32045982 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
32045905 TTACTGACGT
32045915 TTGTATTTTGTTTGGTGATG-TGACAAAAAGAGGG
1 TTGTATTTTGTTTGGTGATGCT-ACAAAAAGAGGG
32045949 TTGTATTTTGTTTGGTGATGCTACAAAAAGAGGG
1 TTGTATTTTGTTTGGTGATGCTACAAAAAGAGGG
32045983 GCACATACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 32 0.97
35 1 0.03
ACGTcount: A:0.26, C:0.04, G:0.31, T:0.38
Consensus pattern (34 bp):
TTGTATTTTGTTTGGTGATGCTACAAAAAGAGGG
Found at i:32048851 original size:31 final size:31
Alignment explanation
Indices: 32048782--32048851 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
32048772 TTTAAGCCCC
* * * *
32048782 TCAAAATTTTTAAAAGTTCTAATTTAAATCT
1 TCAAAAATATTAAAACTTCTAATTAAAATCT
** *
32048813 TTTAAAATATTAAAACTTTTAATTAAAATCT
1 TCAAAAATATTAAAACTTCTAATTAAAATCT
32048844 TCAAAAAT
1 TCAAAAAT
32048852 TTATGTAAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (31 bp):
TCAAAAATATTAAAACTTCTAATTAAAATCT
Found at i:32051109 original size:14 final size:14
Alignment explanation
Indices: 32051073--32051106 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
32051063 TCATCATTTG
32051073 CCTATAACCAAAAC
1 CCTATAACCAAAAC
32051087 CCTATAACCAAAAC
1 CCTATAACCAAAAC
32051101 CC-ATAA
1 CCTATAA
32051107 ACCCATACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
CCTATAACCAAAAC
Found at i:32053565 original size:21 final size:20
Alignment explanation
Indices: 32053540--32053577 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32053530 CCCCTCCCCA
32053540 AAAAAAACCTTCCAAAAAAT
1 AAAAAAACCTTCCAAAAAAT
*
32053560 AAAAAAACCTTCTAAAAA
1 AAAAAAACCTTCCAAAAA
32053578 CCTTTCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.66, C:0.18, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAAAAACCTTCCAAAAAAT
Found at i:32057185 original size:18 final size:18
Alignment explanation
Indices: 32057158--32057204 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
32057148 AAACTCAAAT
* *
32057158 GATGCAAGCTCATTGAAA
1 GATGCGAGCTCATCGAAA
32057176 GATGCGAGCTCATCGAAA
1 GATGCGAGCTCATCGAAA
*
32057194 GCTGCGAGCTC
1 GATGCGAGCTC
32057205 TCCCAAAGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (18 bp):
GATGCGAGCTCATCGAAA
Found at i:32057212 original size:18 final size:18
Alignment explanation
Indices: 32057153--32057213 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
32057143 CTTGCAAACT
* *
32057153 CAAATGATGCAAGCTCATT
1 CAAA-GATGCGAGCTCATC
*
32057172 GAAAGATGCGAGCTCATC
1 CAAAGATGCGAGCTCATC
* *
32057190 GAAAGCTGCGAGCTC-TCC
1 CAAAGATGCGAGCTCAT-C
32057208 CAAAGA
1 CAAAGA
32057214 CGTGACCTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
17 1 0.03
18 31 0.89
19 3 0.09
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (18 bp):
CAAAGATGCGAGCTCATC
Found at i:32059506 original size:16 final size:18
Alignment explanation
Indices: 32059471--32059508 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
32059461 ATTCTCATTT
32059471 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
32059489 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
32059505 AAAT
1 AAAT
32059509 CCATATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:32059685 original size:73 final size:73
Alignment explanation
Indices: 32059566--32059707 Score: 248
Period size: 73 Copynumber: 1.9 Consensus size: 73
32059556 TTAAACTTTA
*
32059566 TTAAACTCCATCTATTTGATATTAATTAGAATAAGGTATTTCAATCTTACTACACTCCTATTAGA
1 TTAAACTCCATCTATTTGATATTAATTAAAATAAGGTATTTCAATCTTACTACACTCCTATTAGA
32059631 ATATCTTG
66 ATATCTTG
* * *
32059639 TTAAACTTCATCTATTTGATATTAATTAAAATAAGGTGTTTCAATCTTACTACACTCCTATTCGA
1 TTAAACTCCATCTATTTGATATTAATTAAAATAAGGTATTTCAATCTTACTACACTCCTATTAGA
32059704 ATAT
66 ATAT
32059708 GGTTTTACGA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 65 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.42
Consensus pattern (73 bp):
TTAAACTCCATCTATTTGATATTAATTAAAATAAGGTATTTCAATCTTACTACACTCCTATTAGA
ATATCTTG
Found at i:32066142 original size:85 final size:85
Alignment explanation
Indices: 32065999--32066169 Score: 306
Period size: 85 Copynumber: 2.0 Consensus size: 85
32065989 AATATAACCG
*
32065999 ACATTATACCTCGAATCTAACATTGTCATAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
1 ACATTATACCTCAAATCTAACATTGTCATAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
32066064 CAAATGCACTCTAATAGTAA
66 CAAATGCACTCTAATAGTAA
* *
32066084 ACATTATACCTCAAATCTAACATTGTCATAATTTTGTTACCAAAGTAGTCTTACATTCCTTGAAC
1 ACATTATACCTCAAATCTAACATTGTCATAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
*
32066149 CAAATGTACTCTAATAGTAA
66 CAAATGCACTCTAATAGTAA
32066169 A
1 A
32066170 ATGGTCCCTA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.34
Consensus pattern (85 bp):
ACATTATACCTCAAATCTAACATTGTCATAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
CAAATGCACTCTAATAGTAA
Found at i:32068092 original size:26 final size:25
Alignment explanation
Indices: 32068055--32068103 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
32068045 ATATTTTGAG
32068055 TTAAAACATACTATAAAATAAAAATT
1 TTAAAACATACT-TAAAATAAAAATT
*
32068081 TTAAGAAC-TACTTAAGATAAAAA
1 TTAA-AACATACTTAAAATAAAAA
32068104 AAACTTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 10 0.48
26 8 0.38
27 3 0.14
ACGTcount: A:0.59, C:0.08, G:0.04, T:0.29
Consensus pattern (25 bp):
TTAAAACATACTTAAAATAAAAATT
Found at i:32073579 original size:41 final size:40
Alignment explanation
Indices: 32073461--32073596 Score: 154
Period size: 41 Copynumber: 3.5 Consensus size: 40
32073451 ACTAGTTTGG
*
32073461 CACCCAGTGCCTCATC-AGATAATTCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGA-ATAATCCGAAGTAATAAATTGA
* * ** *
32073501 CACCCAGTGTCTTATCGGCTAAACCGAAG---TAAATTGA
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAATAAATTGA
*
32073538 CACCTAGTGCCTCATCGAATTAATCCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAA-TAATCCGAAGTAATAAATTGA
*
32073579 CACCCAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
32073597 CTCGAAGCTG
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
37 22 0.29
38 9 0.12
40 22 0.29
41 24 0.31
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGAATAATCCGAAGTAATAAATTGA
Found at i:32074483 original size:4 final size:4
Alignment explanation
Indices: 32074474--32074534 Score: 50
Period size: 4 Copynumber: 13.8 Consensus size: 4
32074464 CCCTTTTCTT
* *
32074474 TTTC TTTC TTTC TTTC TTTTC TAATTC GTTTGGC TTTC TCTG TTTC TTTC
1 TTTC TTTC TTTC TTTC -TTTC T--TTC -TTT--C TTTC TTTC TTTC TTTC
32074524 TTTC TTTC TTT
1 TTTC TTTC TTT
32074535 TCTATTATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
4 33 0.70
5 6 0.13
6 6 0.13
7 2 0.04
ACGTcount: A:0.03, C:0.21, G:0.07, T:0.69
Consensus pattern (4 bp):
TTTC
Found at i:32074584 original size:36 final size:34
Alignment explanation
Indices: 32074532--32074613 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 34
32074522 TCTTTCTTTC
* * *
32074532 TTTTCTATTATAATATATATACTTAAACATTAAGAA
1 TTTTATATTATAATATATATA-ATAAAC-TTAAAAA
32074568 TTTTATATTATAATATATATAATAAACTTAAAAA
1 TTTTATATTATAATATATATAATAAACTTAAAAA
*
32074602 TGTTTATTTTAT
1 T-TTTATATTAT
32074614 GCCGCCTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
34 7 0.17
35 14 0.34
36 20 0.49
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (34 bp):
TTTTATATTATAATATATATAATAAACTTAAAAA
Found at i:32082460 original size:43 final size:43
Alignment explanation
Indices: 32082406--32082529 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 43
32082396 TGTAGCTACG
*
32082406 GCTATTCGCATCGATTTGAGATTTCGTGTAAGACCATAGCTAA
1 GCTATTGGCATCGATTTGAGATTTCGTGTAAGACCATAGCTAA
* * * **
32082449 GCTATTGGCATCGATTTCAAATTTCGTGTAAGACCATAGTTGG
1 GCTATTGGCATCGATTTGAGATTTCGTGTAAGACCATAGCTAA
** * *
32082492 GCTATTGGCATCGATACGAGATTCCCATGTAAGACCAT
1 GCTATTGGCATCGATTTGAGATT-TCGTGTAAGACCAT
32082530 GTCTGGGATA
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 56 0.82
44 12 0.18
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (43 bp):
GCTATTGGCATCGATTTGAGATTTCGTGTAAGACCATAGCTAA
Found at i:32088150 original size:31 final size:31
Alignment explanation
Indices: 32088115--32088192 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
32088105 GTATATGTTT
*
32088115 TATACATTGCCGAATTTGATTTGTATATAAA
1 TATACATTGCCGAATTTGAATTGTATATAAA
* * **
32088146 TATACATTGGCGAATTTGAATTGTTTATGGA
1 TATACATTGCCGAATTTGAATTGTATATAAA
* *
32088177 TATATATTGTCGAATT
1 TATACATTGCCGAATT
32088193 AATTTGAGCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGAATTGTATATAAA
Found at i:32088374 original size:43 final size:43
Alignment explanation
Indices: 32088313--32088565 Score: 362
Period size: 43 Copynumber: 5.9 Consensus size: 43
32088303 ACTTTCGAGG
*
32088313 TGAGATTTCGTGTAAGACCATAGCCGGGCTATTGGCATCGATT
1 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATT
* * * *
32088356 TGAGATTTCATGTAAGACCATAACAGGGTTATTGGCATCGATT
1 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATT
* * *
32088399 TGAGATTTCATGTAAGACCATAGCTAGGCTATTGGCATCAATT
1 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATT
* * **
32088442 TAAGATTTCGTGTAAGACCAAATATGGGCTATTGGCATCGATT
1 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATT
*
32088485 TGAGATTTCGTGTAAGACCATAGCTGAGCTATTGGCATCGATT
1 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATT
* * *
32088528 TTAGATTTTGTGTAAGACCATAACTGGGCTATTGGCAT
1 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCAT
32088566 TGATACGATA
Statistics
Matches: 185, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 185 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATT
Found at i:32097403 original size:21 final size:21
Alignment explanation
Indices: 32097379--32097421 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32097369 ACAAGCTAAA
**
32097379 AAATCTCCCTAGGACTTAATC
1 AAATCTCCCTAAAACTTAATC
32097400 AAATCTCCCTAAAACTTAATC
1 AAATCTCCCTAAAACTTAATC
32097421 A
1 A
32097422 TAATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.28, G:0.05, T:0.28
Consensus pattern (21 bp):
AAATCTCCCTAAAACTTAATC
Found at i:32098443 original size:2 final size:2
Alignment explanation
Indices: 32098438--32098477 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
32098428 CAAATAAAAC
32098438 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32098478 CTGAGGGGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32099060 original size:6 final size:6
Alignment explanation
Indices: 32099049--32099081 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
32099039 GCTTTGCTTC
32099049 TTGGAG TTGGAG TTGGAG TTGGAG TTGGAG TTG
1 TTGGAG TTGGAG TTGGAG TTGGAG TTGGAG TTG
32099082 AGGGTAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.36
Consensus pattern (6 bp):
TTGGAG
Found at i:32127108 original size:42 final size:42
Alignment explanation
Indices: 32127052--32127133 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
32127042 ACACAATAAC
32127052 AATAATAATAGTTTTATACTCAA-AATAATACTAACTAACAAT
1 AATAATAATAGTTTTATACT-AACAATAATACTAACTAACAAT
* * *
32127094 AATAATATTAGTTTTTTACTAACAATAATACTAAGTAACA
1 AATAATAATAGTTTTATACTAACAATAATACTAACTAACA
32127134 TCTAAACCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 2 0.06
42 34 0.94
ACGTcount: A:0.50, C:0.11, G:0.04, T:0.35
Consensus pattern (42 bp):
AATAATAATAGTTTTATACTAACAATAATACTAACTAACAAT
Found at i:32127313 original size:10 final size:10
Alignment explanation
Indices: 32127285--32127321 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
32127275 AAATACTTTT
32127285 TTTTTCTCTTC
1 TTTTTCTC-TC
*
32127296 TCTTTCTCTC
1 TTTTTCTCTC
32127306 TTTTTCTCTC
1 TTTTTCTCTC
32127316 TTTTTC
1 TTTTTC
32127322 CTGCGCCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 17 0.71
11 7 0.29
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTCTCTC
Found at i:32128145 original size:21 final size:21
Alignment explanation
Indices: 32128120--32128171 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
32128110 AGTGGTGGCA
* *
32128120 GTGAGATTAGTTACTGTAGCG
1 GTGAGATTAGGTACTATAGCG
*
32128141 GTGAGATTGGGTACTATAGCG
1 GTGAGATTAGGTACTATAGCG
32128162 GTGAGATTAG
1 GTGAGATTAG
32128172 AAACAATGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.08, G:0.37, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGGTACTATAGCG
Found at i:32131997 original size:94 final size:92
Alignment explanation
Indices: 32131850--32132038 Score: 225
Period size: 94 Copynumber: 2.0 Consensus size: 92
32131840 TAAAGAAGGA
* * * ** *
32131850 AAACAATTGATATTGGAATATTGGACGGGTGTTATGTAAAATGTAGGGGGATTAGGACTAATATT
1 AAACAATTAACATTGGAATATTGGACAGGTGTTATGTAAAATGTAGGGGGATTAAAACTAATATC
* *
32131915 TGGCCATTAGTTTCTCATGTCAAAAAG
66 TGACCATTAATTTCTCATGTCAAAAAG
* * * * *
32131942 AAACAATTAACATTGGAGTATTGGATAGGTGTCATATGTAAAATGTAGTGGGATTAAAATTGATA
1 AAACAATTAACATTGGAATATTGGACAGGTGT--TATGTAAAATGTAGGGGGATTAAAACTAATA
* *
32132007 TCTGACCATTAATTTCTCATGTCCAAAGG
64 TCTGACCATTAATTTCTCATGTCAAAAAG
32132036 AAA
1 AAA
32132039 AGAAAAAAGG
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
92 27 0.34
94 53 0.66
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (92 bp):
AAACAATTAACATTGGAATATTGGACAGGTGTTATGTAAAATGTAGGGGGATTAAAACTAATATC
TGACCATTAATTTCTCATGTCAAAAAG
Found at i:32133376 original size:21 final size:21
Alignment explanation
Indices: 32133350--32133393 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
32133340 AAATAGAGCT
32133350 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
*
32133371 TCTTTGAGTCTGTTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
32133392 TC
1 TC
32133394 AATTGAAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.32, T:0.45
Consensus pattern (21 bp):
TCTTTGAGTCTGCTGTGAGTG
Found at i:32134169 original size:30 final size:30
Alignment explanation
Indices: 32134134--32134198 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
32134124 TGGCAAAAAA
* *
32134134 CTCTCAAATTTCTCCCTAAATTTCTTAAAG
1 CTCTCAAATCTCTCCCTAAATTTCTCAAAG
* *
32134164 CTCTCAAATCTCTCCTTAAATTTCTCAACG
1 CTCTCAAATCTCTCCCTAAATTTCTCAAAG
32134194 CTCTC
1 CTCTC
32134199 TTCAATTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.32, G:0.03, T:0.38
Consensus pattern (30 bp):
CTCTCAAATCTCTCCCTAAATTTCTCAAAG
Found at i:32135718 original size:150 final size:150
Alignment explanation
Indices: 32135433--32135719 Score: 450
Period size: 150 Copynumber: 1.9 Consensus size: 150
32135423 TCGACAATTC
* *
32135433 GGGCAGTAATTCCGGATGAATTCTTTCAAAATTCAAACATTTGGCATGTTAATGTCCCATTGGTC
1 GGGCAGTAATTCCGGATGAATTCTTTCAAAATCCAAACATTTGGCATGTTAAGGTCCCATTGGTC
* * * * *
32135498 AACTATGCTACTGTCGAGATGCACCAGACGGATAAAGTGTTGCGACAATTTGGATTCCAACAACG
66 AACTATGCTACTGTCAAGATACACCAGACAGATAAAGTGTTGCGACAATTTAGATTCCAACAACC
*
32135563 GATTCCCATTAGTCAAACTT
131 AATTCCCATTAGTCAAACTT
* *
32135583 GGGCAGTAATTCCGGATGAATTCTTTCAAAATCCGAACATTTGGCATGTTAAGGTCCCATTGTTC
1 GGGCAGTAATTCCGGATGAATTCTTTCAAAATCCAAACATTTGGCATGTTAAGGTCCCATTGGTC
* *
32135648 AACTATGCTACTGTTAAGATACACCAGACAGATAAAGTGTTGCGACAATTTAGATTTCGAA-AAC
66 AACTATGCTACTGTCAAGATACACCAGACAGATAAAGTGTTGCGACAATTTAGA-TTCCAACAAC
32135712 CAATTCCC
130 CAATTCCC
32135720 GAGGCACCTG
Statistics
Matches: 124, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
150 119 0.96
151 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (150 bp):
GGGCAGTAATTCCGGATGAATTCTTTCAAAATCCAAACATTTGGCATGTTAAGGTCCCATTGGTC
AACTATGCTACTGTCAAGATACACCAGACAGATAAAGTGTTGCGACAATTTAGATTCCAACAACC
AATTCCCATTAGTCAAACTT
Found at i:32136553 original size:25 final size:25
Alignment explanation
Indices: 32136525--32136572 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
32136515 AATAAAATAA
*
32136525 AAATTGTTTTTA-ATATTTTAATAGT
1 AAATTATTTTTATAT-TTTTAATAGT
32136550 AAATTATTTTTATATTTTTAATA
1 AAATTATTTTTATATTTTTAATA
32136573 AAATAGAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (25 bp):
AAATTATTTTTATATTTTTAATAGT
Found at i:32139779 original size:125 final size:126
Alignment explanation
Indices: 32139556--32139825 Score: 391
Period size: 125 Copynumber: 2.2 Consensus size: 126
32139546 GGCTAAACAT
* * * * * *
32139556 GAACTACTATAGAAAAATAGCGTCGACTTGGGATCTTTTTTCATCAATTTTACTGACAGGGCATC
1 GAACTACTGTAGAAAAAAAGCGTCCACGTGGGAACCTTTTTCATCAATTTTACTGACAGGGCATC
* * *
32139621 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCATTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAA
* *
32139682 GAACTACTGTAGAAAAAAAGCGTCCACGT-GGAACCTTTTTCAAT-AATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAAAGCGTCCACGTGGGAACCTTTTTC-ATCAATTTTACTGACAGGGCAT
* *
32139745 CCTGCTTGAAGCATTTTTCACACTATTTGTTCAGAACCGTATTCTCAAAATTATTTTTTCAA
65 CCTGCTTGAAGCATTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAA
*
32139807 GAACTCCTGTAGAAAAAAA
1 GAACTACTGTAGAAAAAAA
32139826 ATAAAATCCT
Statistics
Matches: 129, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
125 102 0.79
126 27 0.21
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAAAGCGTCCACGTGGGAACCTTTTTCATCAATTTTACTGACAGGGCATC
CTGCTTGAAGCATTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAA
Found at i:32139987 original size:21 final size:21
Alignment explanation
Indices: 32139961--32140033 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
32139951 TAAAATTCCT
32139961 AAAACCCTAAATTATTTTAAC
1 AAAACCCTAAATTATTTTAAC
* **
32139982 AAAACCCTAAACT-TTACAA-
1 AAAACCCTAAATTATTTTAAC
*
32140001 ATCCAACCCTAAATTATTTTAAC
1 A--AAACCCTAAATTATTTTAAC
*
32140024 AAAATCCTAA
1 AAAACCCTAA
32140034 CCCTAATAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
19 1 0.03
20 4 0.10
21 29 0.74
22 4 0.10
23 1 0.03
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAACCCTAAATTATTTTAAC
Found at i:32143423 original size:22 final size:22
Alignment explanation
Indices: 32143388--32143439 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
32143378 AGTTACAAAA
*
32143388 AGTTTA-AGTATTTGAT-TTGAT
1 AGTTTAGAATATTTG-TCTTGAT
32143409 AGTTTAGAATATTTGTCTTGAT
1 AGTTTAGAATATTTGTCTTGAT
*
32143431 A-ATTAGAAT
1 AGTTTAGAAT
32143440 TCGCCATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (22 bp):
AGTTTAGAATATTTGTCTTGAT
Found at i:32146483 original size:57 final size:57
Alignment explanation
Indices: 32146415--32146545 Score: 156
Period size: 57 Copynumber: 2.3 Consensus size: 57
32146405 AAACAATCTG
* * * * *
32146415 ATATGGCATTGAAATGAATAATGTGAAATTGGTATAAACTTAT-AATTTGATAATTGA
1 ATATGACATTGAAATGAATAAGGTGAAATTAGCATAAACTTATGAA-TTGATAATAGA
* * * *
32146472 ATATGACATTGAAATGAATTAGGTGAAATTAGCATGATCTTATGAATTGATGATAGA
1 ATATGACATTGAAATGAATAAGGTGAAATTAGCATAAACTTATGAATTGATAATAGA
*
32146529 ATATGACATTGAGATGA
1 ATATGACATTGAAATGA
32146546 GTTACGTGAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 61 0.97
58 2 0.03
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (57 bp):
ATATGACATTGAAATGAATAAGGTGAAATTAGCATAAACTTATGAATTGATAATAGA
Found at i:32147986 original size:21 final size:21
Alignment explanation
Indices: 32147962--32148011 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
32147952 TGCTCATCAA
32147962 ACTTATTTATCAAATATATAT
1 ACTTATTTATCAAATATATAT
*
32147983 ACTTGATCT-TCAAATATATAT
1 ACTT-ATTTATCAAATATATAT
32148004 A-TTATTTA
1 ACTTATTTA
32148012 CATATCACGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 3 0.12
20 2 0.08
21 17 0.68
22 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (21 bp):
ACTTATTTATCAAATATATAT
Found at i:32148172 original size:41 final size:41
Alignment explanation
Indices: 32148127--32148214 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
32148117 GACTTATAGC
* * *
32148127 CCGAATAATTTCACTAGCATT-AAGCCTGCTAGACAATGAGT
1 CCGAATAATATCACCAGC-TTCAAGCCTGCTAGACAATAAGT
* *
32148168 CCGAATTATATCACCGGCTTCAAGCCTGCTAGACAATAAGT
1 CCGAATAATATCACCAGCTTCAAGCCTGCTAGACAATAAGT
*
32148209 CTGAAT
1 CCGAAT
32148215 TACATTCGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 2 0.05
41 38 0.95
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (41 bp):
CCGAATAATATCACCAGCTTCAAGCCTGCTAGACAATAAGT
Found at i:32155378 original size:21 final size:21
Alignment explanation
Indices: 32155354--32155403 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
32155344 TGCTCATCAA
32155354 ACTTATTTATCAAATATATAT
1 ACTTATTTATCAAATATATAT
*
32155375 ACTTGATCT-TCAAATATATAT
1 ACTT-ATTTATCAAATATATAT
32155396 A-TTATTTA
1 ACTTATTTA
32155404 CATATCACGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 3 0.12
20 2 0.08
21 17 0.68
22 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (21 bp):
ACTTATTTATCAAATATATAT
Found at i:32155579 original size:41 final size:40
Alignment explanation
Indices: 32155489--32155608 Score: 141
Period size: 41 Copynumber: 2.9 Consensus size: 40
32155479 TGATTTAATA
* * * * * *
32155489 CACCGGCTTTTAGCCTGCTAGACTTATAGTCCGAATAATTT
1 CACCGGCATTAAGCCTGCTAGAC-AATAGTCTGAATTATAT
*
32155530 CACTGGCATTAAGCCTGCTAGACAATGAGTCTGAATTATAT
1 CACCGGCATTAAGCCTGCTAGACAAT-AGTCTGAATTATAT
*
32155571 CACCGGCATCAAGCCTGCTAGACAATAAGTCTGAATTA
1 CACCGGCATTAAGCCTGCTAGACAAT-AGTCTGAATTA
32155609 CATTCGATCA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 2 0.03
41 66 0.97
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (40 bp):
CACCGGCATTAAGCCTGCTAGACAATAGTCTGAATTATAT
Found at i:32158741 original size:30 final size:30
Alignment explanation
Indices: 32158705--32158775 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
32158695 TGAAATAATC
**
32158705 AATTAAGCCCTCGTAAAATAATAAAAAATT
1 AATTAAGCCCTCACAAAATAATAAAAAATT
* *
32158735 AATTAAGTCCTCACAAAATAATAAAAATTT
1 AATTAAGCCCTCACAAAATAATAAAAAATT
32158765 AATTAAGCCCT
1 AATTAAGCCCT
32158776 ACATATCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (30 bp):
AATTAAGCCCTCACAAAATAATAAAAAATT
Found at i:32171155 original size:18 final size:20
Alignment explanation
Indices: 32171122--32171163 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
32171112 TAACATGAAA
32171122 TTTAAATAACTAAAAATCAT
1 TTTAAATAACTAAAAATCAT
32171142 TTTAAAT-A-TAAAAATCAT
1 TTTAAATAACTAAAAATCAT
32171160 TTTA
1 TTTA
32171164 TACTTTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 14 0.64
19 1 0.05
20 7 0.32
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTAAATAACTAAAAATCAT
Found at i:32173156 original size:14 final size:14
Alignment explanation
Indices: 32173137--32173164 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32173127 GACCTTTGGT
32173137 GATGGTAAAAAAGG
1 GATGGTAAAAAAGG
32173151 GATGGTAAAAAAGG
1 GATGGTAAAAAAGG
32173165 AAGAATCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.36, T:0.14
Consensus pattern (14 bp):
GATGGTAAAAAAGG
Found at i:32175763 original size:5 final size:5
Alignment explanation
Indices: 32175753--32175789 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
32175743 TTCAAGGTTA
32175753 TTTAT TTTAT TTTAT TTTCAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTT-AT TTTAT TTTAT TTTAT T
32175790 CTCTTTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:32175777 original size:16 final size:16
Alignment explanation
Indices: 32175756--32175786 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32175746 AAGGTTATTT
32175756 ATTTTATTTTATTTTC
1 ATTTTATTTTATTTTC
32175772 ATTTTATTTTATTTT
1 ATTTTATTTTATTTT
32175787 ATTCTCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTATTTTATTTTC
Found at i:32176902 original size:15 final size:15
Alignment explanation
Indices: 32176882--32176921 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
32176872 TAATTTTTAG
**
32176882 ATTATTATTAGTATT
1 ATTATTATTACCATT
*
32176897 ATTATTAATACCATT
1 ATTATTATTACCATT
32176912 ATTATTATTA
1 ATTATTATTA
32176922 TTCTTAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (15 bp):
ATTATTATTACCATT
Found at i:32182082 original size:6 final size:6
Alignment explanation
Indices: 32182065--32182123 Score: 73
Period size: 6 Copynumber: 9.3 Consensus size: 6
32182055 TCACTTTTTA
* *
32182065 AAAAAG AAAAAA AGAAAAT AAAAAT AAAAAT AAAATAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT -AAA-AAT AAAAAT AAAAAT
32182116 AAAAAT AA
1 AAAAAT AA
32182124 GAGGCCAAGG
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
6 34 0.71
7 11 0.23
8 3 0.06
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:32182094 original size:20 final size:20
Alignment explanation
Indices: 32182065--32182120 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
32182055 TCACTTTTTA
* *
32182065 AAAAAGAAAAA-AAGAAAAT
1 AAAAATAAAAATAAAAAAAT
*
32182084 AAAAATAAAAATAAAATAAT
1 AAAAATAAAAATAAAAAAAT
32182104 AAAAATAAAAATAAAAA
1 AAAAATAAAAATAAAAA
32182121 TAAGAGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 10 0.31
20 22 0.69
ACGTcount: A:0.84, C:0.00, G:0.04, T:0.12
Consensus pattern (20 bp):
AAAAATAAAAATAAAAAAAT
Found at i:32183175 original size:45 final size:44
Alignment explanation
Indices: 32183077--32183175 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 44
32183067 TGCACTGGGG
*
32183077 CAGATTGAAGATACAAGTCTTATCTCCTTGAAGTTGTAGTGGAG
1 CAGATTGAAGATACAAGTCTTATCTCCTTGAAGTTGTAGTGGAA
* * * *
32183121 CAAACTGAAGATAGCGAA-TCTTAT-TTCTCTGATGTTGTAGTGGAA
1 CAGATTGAAGATA-C-AAGTCTTATCTCCT-TGAAGTTGTAGTGGAA
32183166 CAGATTGAAG
1 CAGATTGAAG
32183176 CTATAAATTA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
44 14 0.31
45 29 0.64
46 2 0.04
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (44 bp):
CAGATTGAAGATACAAGTCTTATCTCCTTGAAGTTGTAGTGGAA
Found at i:32183254 original size:44 final size:43
Alignment explanation
Indices: 32183189--32183985 Score: 399
Period size: 44 Copynumber: 17.7 Consensus size: 43
32183179 TAAATTACAG
* *
32183189 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGGAATAACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTT-GAATAACAA
* * * * *
32183233 ACCTTATCTCCCTAAAGTTGCAATAGAGCAGGTTGAAGATACCA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATA-ACAA
* * *
32183277 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTATA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTG-A---AT-AA-CA-A
* * * * * *
32183327 GATCTTATCTCTCTGAAGTTGCAGTAGAGCA-GAT-CATATCAA
1 -ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATAACAA
** *
32183369 A-CATTATCTCCCTGAAA-TTGCAGTGGAGGTGGTTAAAAATAA-ATCA
1 ATC-TTATCTCCCT-AAAGTTGCAGTGGAGCAGGTT--GAATAACA--A
* * *
32183415 ATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGACAGGCTACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTG-A-ATA----ACAA
* * * * * **
32183464 ATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAAGCCACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAA-TAACAA
* * * *
32183508 ACCTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTTAAATAACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGG-TTGAATAACAA
* * * *
32183552 ACCGTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATA-ACAA
* * * *
32183596 ATCTTATCTCCCTGAAGTTGCAGTGGAGCATGTTGAAGATACCA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATA-ACAA
*
32183640 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AA-AACAATGA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATAAC-A--A
* * * * * *
32183684 ATCCTATAC-CTCTGAAGTTGCAGTAGTTGCAGTGAGACAGTTCGAAATCACGA
1 ATCTTAT-CTCCCTAAAGTTGCAGT-G--G-AG-CAG---GTT-G-AATAACAA
* * ** * ** *
32183737 GTCTTATCTCCCTGAAGTTATAGTGAAGCAGACT-AAAACCACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATA--ACAA
* * * * * * **
32183781 ATCTCATCCCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAA-TAACAA
* * * *
32183825 ACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTG-AATAACAA
* * * *
32183869 ACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATA-ACAA
* * * *
32183913 ATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT-ACTA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAA--TAACAA
* *
32183957 ATCCTATCTCCCTGAAGTTGCAGTGGAGC
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGC
32183986 GGATTAAAAC
Statistics
Matches: 589, Mismatches: 110, Indels: 108
0.73 0.14 0.13
Matches are distributed among these distances:
40 1 0.00
41 22 0.04
42 8 0.01
43 15 0.03
44 386 0.66
45 22 0.04
46 28 0.05
47 3 0.01
48 8 0.01
49 38 0.06
50 3 0.01
51 29 0.05
52 4 0.01
53 18 0.03
55 2 0.00
56 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAATAACAA
Found at i:32183335 original size:139 final size:138
Alignment explanation
Indices: 32183126--32183670 Score: 488
Period size: 139 Copynumber: 4.0 Consensus size: 138
32183116 TGGAGCAAAC
* * * * * * * *
32183126 TGAAGATAGCGAATCTTATTTCTCTGATGTTGTAGTGGAACAGATTGAAGCTATAAATTACAGAT
1 TGAAGATAACCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTACAGAT
* *
32183191 CTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGGAATAACAAACCTTATCTCCCTAAAGTTGCAA
66 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTT--AATAACAAACCTTATCTCCCTAAAGTTGCAG
32183256 TAGAGCAGGT
129 TAGAGCAGGT
* *
32183266 TGAAGAT-ACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTATAGAT
1 TGAAGATAACCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTACAGAT
* * * *
32183330 CTTATCTCTCTGAAGTTGCAGTAGAGCA-GATCATATCAAACATTATCTCCCTGAAA-TTGCAGT
66 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTAATAACAAACCTTATCTCCCT-AAAGTTGCAGT
* **
32183393 GGAGGTGGT
130 AGAGCAGGT
* * * * * *** *
32183402 TAAAAATAAATCAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAG--ACAGGCTACAAA
1 TGAAGAT-AACCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTACAGA
* * * * * *
32183465 TCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAA-AGCCACAAACCTTATCTCTCTAAAGTTGC
65 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTAATA---ACAAACCTTATCTCCCTAAAGTTGC
32183529 AGTAGAGCAGGT
127 AGTAGAGCAGGT
* * * * * *
32183541 TTAA-ATAACAAACCGTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAG--AT--A--CCA-AT
1 TGAAGATAACCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTACAGAT
* * * * * *
32183598 CTTATCTCCCTGAAGTTGCAGTGGAGCATGTTGAAGATACCAATCTTATCTCCCTAAAGTTGCAG
66 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTT-AATA-ACAAACCTTATCTCCCTAAAGTTGCAG
*
32183663 TGGAGCAG
129 TAGAGCAG
32183671 ATTAAAACAA
Statistics
Matches: 335, Mismatches: 60, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
132 61 0.18
133 4 0.01
134 1 0.00
136 67 0.20
137 43 0.13
138 46 0.14
139 106 0.32
140 7 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (138 bp):
TGAAGATAACCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTACAGAT
CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTAATAACAAACCTTATCTCCCTAAAGTTGCAGTA
GAGCAGGT
Found at i:32183866 original size:317 final size:315
Alignment explanation
Indices: 32183191--32184142 Score: 1228
Period size: 317 Copynumber: 3.0 Consensus size: 315
32183181 AATTACAGAT
* *
32183191 CTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGGAATAACAAACCTTATCTCCCTAAAGTTGCAA
1 CTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
*
32183256 TAGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATAA
66 TGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--
* * * * * * *
32183321 ATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAA--ACAT-TAT-CTCCCT
127 A--CTA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGA-ATCTATAC-CTCT
* * * ** *
32183382 GAAATTGCAGTGGAGGTG--GTTA-A-AAAT-AAATCA--A-TCTTATCTCCCTAAAGTTGCAGT
187 GAAGTTGCAGT--AGTTGCAGTGAGACAGTTGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGT
* * * * *
32183439 GGAGTAGATTGAAGACAGGCTACAAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAAGCC
250 GGAGCAGATT-AA-A-A--CCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGTAGATTAAAGCC
32183504 ACAAAC
310 ACAAAC
* *
32183510 CTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTTAAATAACAAACCGTATCTCCCTAAAGTTGCAG
1 CTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
*
32183575 TGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCATG-TTGAAGATACC
66 TGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTGAAGATACT
*
32183639 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACAATGAATCCTATACCTCTGAAGTTG
130 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAAT-CTATACCTCTGAAGTTG
** *
32183704 CAGTAGTTGCAGTGAGACAGTTCGAAATCACGAGTCTTATCTCCCTGAAGTTATAGTGAAGCAGA
194 CAGTAGTTGCAGTGAGACAGTT-GAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
*
32183769 CTAAAACCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACAAAC
258 TTAAAACCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACAAAC
* *
32183827 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
* *
32183892 TGGAGCAGGTTGAAGATACCAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTA
66 TGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTA
* * * * *
32183957 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGATGAATGCTATACCTCTAAAGTTGT
131 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAAT-CTATACCTCTGAAGTTGC
*
32184022 AGTAGTTGCAGTGAGGCAGTTTGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
195 AGTAGTTGCAGTGAGACAG-TTGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * *
32184087 TAAAACCACAAATCTCGTCCCCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAA
259 TAAAACCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACAAA
32184143 TCTTGTCCCC
Statistics
Matches: 563, Mismatches: 53, Indels: 36
0.86 0.08 0.06
Matches are distributed among these distances:
312 35 0.06
313 7 0.01
314 1 0.00
315 20 0.04
316 3 0.01
317 339 0.60
318 2 0.00
319 124 0.22
320 2 0.00
321 3 0.01
322 27 0.05
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (315 bp):
CTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
TGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTA
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAATCTATACCTCTGAAGTTGCA
GTAGTTGCAGTGAGACAGTTGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA
AAACCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACAAAC
Found at i:32184111 original size:44 final size:44
Alignment explanation
Indices: 32184063--32184164 Score: 177
Period size: 44 Copynumber: 2.3 Consensus size: 44
32184053 AGTCTTATCT
*
32184063 CCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAATCTCGTCC
1 CCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAATCTCGTCC
* *
32184107 CCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATCTTGTCC
1 CCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAATCTCGTCC
32184151 CCCTGAAGTTGCAG
1 CCCTGAAGTTGCAG
32184165 GCAAAGTAGA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAATCTCGTCC
Found at i:32184157 original size:185 final size:176
Alignment explanation
Indices: 32183746--32184164 Score: 419
Period size: 185 Copynumber: 2.3 Consensus size: 176
32183736 AGTCTTATCT
* * * *
32183746 CCCTGAAGTTATAGTGAAGCAGACTAAAACCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGTA
1 CCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCA
* *
32183811 GATTAAAGCCACAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTAT
66 GATTAAAACCACAAACCTTACCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTAT
* * * * * **
32183876 CTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATTT
131 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAAACACAAATCTCATCC
* * * * * * * * *
32183922 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCG
1 CCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCA
* * ** * * *
32183987 GATTAAAACGATGAATGCTATACCTCTAAAGTTGTAGTAGTTGCAGT-GAGGCAGTTTGAAATCA
66 GATTAAAACCA-CAAACCT-TACCTCT----CTG-A--AGTTGCAGTAGA-GCAGGTTGAAATAA
* ** *
32184051 CGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAACCACAAATCTCGTCC
121 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA-CACAAATCTCATCC
*
32184107 CCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATCTTGTCCCCCTGAAGTTGCAG
1 CCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATCTTATCCCCCTGAAGTTGCAG
32184165 GCAAAGTAGA
Statistics
Matches: 190, Mismatches: 42, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
176 61 0.32
177 4 0.02
178 6 0.03
182 2 0.01
183 1 0.01
184 5 0.03
185 111 0.58
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (176 bp):
CCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCA
GATTAAAACCACAAACCTTACCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTAT
CTCCCTGAAGTTGCAGTGGAGCAGATTGAAAACACAAATCTCATCC
Found at i:32184161 original size:141 final size:141
Alignment explanation
Indices: 32183884--32184143 Score: 319
Period size: 141 Copynumber: 1.8 Consensus size: 141
32183874 ATCTCCCTGA
* *
32183884 AGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGA
1 AGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
* * * * * * * * ** *
32183949 AGCTACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGATGAATGCTATACCTCT
66 AACCACAAATCCTATCCCCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATGCTATACCCCT
32184014 AAAGTTGTAGT
131 AAAGTTGTAGT
* * *
32184025 AGTTGCAGT-GAGGCAGTTTGAA-ATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 AGTTGCAGTGGA-GCAGGTTGAAGAT-ACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
*
32184088 AAAACCACAAAT-CTCGTCCCCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAAT
64 AAAACCACAAATCCT-ATCCCCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAAT
32184144 CTTGTCCCCC
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
140 6 0.06
141 94 0.94
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (141 bp):
AGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
AACCACAAATCCTATCCCCCTGAAGTTACAGTGGAGCAGACTAAAACCACAAATGCTATACCCCT
AAAGTTGTAGT
Found at i:32185330 original size:14 final size:14
Alignment explanation
Indices: 32185311--32185340 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32185301 TAAAACCGAA
*
32185311 TATACATATGTATT
1 TATACATATATATT
32185325 TATACATATATATT
1 TATACATATATATT
32185339 TA
1 TA
32185341 AATGTCAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (14 bp):
TATACATATATATT
Found at i:32185994 original size:41 final size:41
Alignment explanation
Indices: 32185936--32186044 Score: 148
Period size: 41 Copynumber: 2.7 Consensus size: 41
32185926 CCTGATTCAA
* *
32185936 TTCACCGGCAATT-AGCCTGCTAGACTTAAAGTCCGAGTTAT
1 TTCACCGGC-ATTAAGCCTGCTAGACTTAAAGTCCGAATTAC
* *
32185977 TTCACCGGCATTAAGCCTGCTGGACATAAAGTCCGAATTAC
1 TTCACCGGCATTAAGCCTGCTAGACTTAAAGTCCGAATTAC
* *
32186018 ATCACCGGCCTTAAGCCTGCTAGACTT
1 TTCACCGGCATTAAGCCTGCTAGACTT
32186045 TAAGCCTGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
40 3 0.05
41 56 0.95
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (41 bp):
TTCACCGGCATTAAGCCTGCTAGACTTAAAGTCCGAATTAC
Found at i:32188932 original size:15 final size:15
Alignment explanation
Indices: 32188912--32188951 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
32188902 TAATTTTTAG
**
32188912 ATTATTATTAGTATT
1 ATTATTATTACCATT
*
32188927 ATTATTAATACCATT
1 ATTATTATTACCATT
32188942 ATTATTATTA
1 ATTATTATTA
32188952 TTCTTAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (15 bp):
ATTATTATTACCATT
Found at i:32196246 original size:4 final size:4
Alignment explanation
Indices: 32196239--32196264 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
32196229 TATTTGAATG
32196239 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
32196265 TTAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:32196302 original size:15 final size:15
Alignment explanation
Indices: 32196284--32196315 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
32196274 CATTTTACTA
32196284 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
32196299 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
32196314 TT
1 TT
32196316 TGCACGCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:32205014 original size:31 final size:31
Alignment explanation
Indices: 32204979--32205040 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
32204969 TAACATCCTT
*
32204979 GTGACTTAAAT-AAATATTTTTGAATAGTTTA
1 GTGACTTAAATGAAA-ACTTTTGAATAGTTTA
*
32205010 GTGACTTAAATGAAAACTTTTGAATATTTTA
1 GTGACTTAAATGAAAACTTTTGAATAGTTTA
32205041 ATTACCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.44
Consensus pattern (31 bp):
GTGACTTAAATGAAAACTTTTGAATAGTTTA
Found at i:32208106 original size:164 final size:164
Alignment explanation
Indices: 32207694--32208181 Score: 750
Period size: 161 Copynumber: 3.0 Consensus size: 164
32207684 TTCAATCATT
* * * * *
32207694 GTGTTGTTGTATCCTAGGAGACAGTCGATCAATATTTCTCCTAGTACCTTAGGAGCGGCCGAATT
1 GTGTTGTTGTATCCTAGGAGACAGTCGACCAACATTTCTCCAAGTACCTTAGGAACGGTCGAATT
*
32207759 TGTCTTAAGGAAACTGTGTAAAACAAGCCTCAACATCTAGTAAAACTCGATTCTTCTTTTTGATT
66 TGTCTTAAGGAAACTGTGTAAAACAAGCCTCAACATCTAATAAAACTCGATTCTTCTTTTTGATT
*
32207824 TTTGGTTTTCGTTATGTTATTTATTGGTTTTTCA
131 TCTGGTTTTCGTTATGTTATTTATTGGTTTTTCA
*
32207858 --G-TGTTGTATCCTAGGAGACAGTCGACCAACGTTTCTCCAAGTACCTTA-GAAGCGGTCGAAT
1 GTGTTGTTGTATCCTAGGAGACAGTCGACCAACATTTCTCCAAGTACCTTAGGAA-CGGTCGAAT
* * * **
32207919 TTGTCTTAAGGAAACTATGTAAAACAAACCTCATCATCTAATAAAACTCGATTCTTCTTTTCAAT
65 TTGTCTTAAGGAAACTGTGTAAAACAAGCCTCAACATCTAATAAAACTCGATTCTTCTTTTTGAT
32207984 TTCTGGTTTTCGTTATGTTATTTATTGGTTTTTCA
130 TTCTGGTTTTCGTTATGTTATTTATTGGTTTTTCA
* *
32208019 GTGTTGTTGTATCCTAGGAGACAGTCGACCAACACTTCTCCAAGTACCTTAGGAACGGTCAAATT
1 GTGTTGTTGTATCCTAGGAGACAGTCGACCAACATTTCTCCAAGTACCTTAGGAACGGTCGAATT
* * *
32208084 TGTCTTAAGGAAACTGTGTAAAACAGGCGTCAACATTTAATAAAACTCGATTCTTCTTTTTGATT
66 TGTCTTAAGGAAACTGTGTAAAACAAGCCTCAACATCTAATAAAACTCGATTCTTCTTTTTGATT
* * *
32208149 TCTGGTTTTTGTTATATTATTTATTAGTTTTTC
131 TCTGGTTTTCGTTATGTTATTTATTGGTTTTTC
32208182 GTATCTGATA
Statistics
Matches: 292, Mismatches: 27, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
160 2 0.01
161 144 0.49
162 1 0.00
163 1 0.00
164 141 0.48
165 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (164 bp):
GTGTTGTTGTATCCTAGGAGACAGTCGACCAACATTTCTCCAAGTACCTTAGGAACGGTCGAATT
TGTCTTAAGGAAACTGTGTAAAACAAGCCTCAACATCTAATAAAACTCGATTCTTCTTTTTGATT
TCTGGTTTTCGTTATGTTATTTATTGGTTTTTCA
Found at i:32208223 original size:5 final size:5
Alignment explanation
Indices: 32208207--32208235 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
32208197 AATATAAATT
32208207 ATTTA A-TTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA
32208236 TATATCAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTA
Found at i:32210317 original size:31 final size:32
Alignment explanation
Indices: 32210282--32210351 Score: 106
Period size: 31 Copynumber: 2.2 Consensus size: 32
32210272 TTACAATTTG
* *
32210282 GTCATTGAATTATTCTAAAAAA-TTTATTTAA
1 GTCATTGAACTATTCAAAAAAATTTTATTTAA
*
32210313 GTCATTGAACTATTCAAAAAAATTTTATTTTA
1 GTCATTGAACTATTCAAAAAAATTTTATTTAA
32210345 GTCATTG
1 GTCATTG
32210352 GACTGTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
31 20 0.57
32 15 0.43
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (32 bp):
GTCATTGAACTATTCAAAAAAATTTTATTTAA
Found at i:32220857 original size:41 final size:41
Alignment explanation
Indices: 32220800--32220883 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
32220790 GGTAAACTAG
32220800 GATATTTTGAATACTGTTGTAAATGATTATCATGGAGTATA
1 GATATTTTGAATACTGTTGTAAATGATTATCATGGAGTATA
*
32220841 GATATTTTGGATACTGTTGTAAATGATTATCATGGAGTATA
1 GATATTTTGAATACTGTTGTAAATGATTATCATGGAGTATA
32220882 GA
1 GA
32220884 CCTTATAACT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (41 bp):
GATATTTTGAATACTGTTGTAAATGATTATCATGGAGTATA
Found at i:32222260 original size:26 final size:26
Alignment explanation
Indices: 32222238--32222305 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
32222228 TTGTAAATTC
* *
32222238 CAAATAATAAAAGTATTTTTAAATAT
1 CAAATAATAAAAATATTATTAAATAT
32222264 CAAATAATAAAAATATTATTAAATAT
1 CAAATAATAAAAATATTATTAAATAT
*
32222290 CAAATAAAAATAAATA
1 CAAATAATAA-AAATA
32222306 ATAATAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 33 0.87
27 5 0.13
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (26 bp):
CAAATAATAAAAATATTATTAAATAT
Found at i:32231377 original size:56 final size:50
Alignment explanation
Indices: 32231302--32231497 Score: 155
Period size: 50 Copynumber: 3.8 Consensus size: 50
32231292 ACATTAGGGG
* * *
32231302 GATGAGA--TCCCATGTAAGACCATGTATGGGACATGGCATTAACATTATTGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAACA-CA--GA
* *
32231353 GGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGACACAGA
1 -G--ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAACACAGA
* * * * *
32231406 GATGAGAGGTCCCTCGTAAGACCATGTCTGGAACATGACA-TAGGCACCGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTA-ACACAGA
* ** * * * *
32231456 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATT
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATT
32231498 GGCAGTATAG
Statistics
Matches: 118, Mismatches: 20, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
49 1 0.01
50 72 0.61
51 1 0.01
52 2 0.02
53 2 0.02
54 6 0.05
55 1 0.01
56 33 0.28
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (50 bp):
GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAACACAGA
Found at i:32231415 original size:50 final size:50
Alignment explanation
Indices: 32231357--32231496 Score: 163
Period size: 50 Copynumber: 2.8 Consensus size: 50
32231347 TATTGAGGTT
* * *
32231357 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGACACAGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACATAGACACAGAG
* * * * *
32231407 ATGAGAGGTCCCTCGTAAGACCATGTCTGGAACATGACATAGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACATAGACACAGAG
** * * *
32231457 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGACAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACAT
32231497 TGGCAGTATA
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACATAGACACAGAG
Found at i:32232682 original size:124 final size:124
Alignment explanation
Indices: 32232462--32232929 Score: 801
Period size: 124 Copynumber: 3.8 Consensus size: 124
32232452 CGAGTTGATA
** * * * **
32232462 TTTCTGATGAAATAGTATAAAATCGCTTTTAGCAGGATGCTTTTTGAGAAGAATTTGTGAAATTG
1 TTTCTGACCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCA
* *
32232527 CGGCCTCGTGAACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTGACT
66 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTGACT
* * *
32232586 TTTCTGAGCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCA
1 TTTCTGACCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCA
32232651 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTGACT
66 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTGACT
32232710 TTTCTGACCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCA
1 TTTCTGACCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCA
32232775 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTGACT
66 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTGACT
*
32232834 TTTCTGACCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGACCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCA
* *
32232899 CGGCCTTGTGGGCGCGCTTTTGCTACAGTAG
66 CGGCCTCGTGGACGCGCTTTTGCTACAGTAG
32232930 CATGTTTGGG
Statistics
Matches: 331, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
124 331 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (124 bp):
TTTCTGACCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCA
CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTGACT
Found at i:32234119 original size:25 final size:25
Alignment explanation
Indices: 32234067--32234119 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
32234057 AAAATCTGAT
* *
32234067 AAGTTTGAGGCGAAGTGTGCGGTGC
1 AAGTTTGAGGCGAAGTGTGCAGTCC
32234092 AAGTTTGAGGCGAAGTGTGCAGTCC
1 AAGTTTGAGGCGAAGTGTGCAGTCC
32234117 AAG
1 AAG
32234120 ACGGCACATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.40, T:0.23
Consensus pattern (25 bp):
AAGTTTGAGGCGAAGTGTGCAGTCC
Done.