Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 102 of 185
Found at i:32236037 original size:37 final size:37
Alignment explanation
Indices: 32235995--32236159 Score: 312
Period size: 37 Copynumber: 4.5 Consensus size: 37
32235985 TTGTATTAAC
32235995 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
*
32236032 TCAAATTATATAAAATTATTAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
*
32236069 TCAAATTATATAAAATTATTAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
32236106 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
32236143 TCAAATTATATAAAATT
1 TCAAATTATATAAAATT
32236160 GGATTAGTGT
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 126 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.39
Consensus pattern (37 bp):
TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
Found at i:32236210 original size:29 final size:28
Alignment explanation
Indices: 32236156--32236314 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 28
32236146 AATTATATAA
* *
32236156 AATTGGATTAGTGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
* *
32236184 AAGTTAGGTTAAGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
32236213 --TTGGG-TAGGGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
*
32236238 GAATTGGGTTAGGGTTAGAGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
32236267 AAATTGGGTTAGGGTTAGGGTTTTTAACTG
1 -AATTGGGTTAGGGTTAGGGTTTTTAA-TT
32236297 AATTGGGTTAGGGTTAGG
1 AATTGGGTTAGGGTTAGG
32236315 AATAAACTTC
Statistics
Matches: 115, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
25 19 0.17
26 4 0.03
28 7 0.06
29 84 0.73
30 1 0.01
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.44
Consensus pattern (28 bp):
AATTGGGTTAGGGTTAGGGTTTTTAATT
Found at i:32236232 original size:54 final size:56
Alignment explanation
Indices: 32236157--32236313 Score: 194
Period size: 54 Copynumber: 2.8 Consensus size: 56
32236147 ATTATATAAA
* * *
32236157 ATTGGATTAGTGTTAGGGTTTTTAATT-AAGTTAGGTTAAGGTTAGGGTTTTTAATT
1 ATTGGGTTAGGGTTAGGGTTTTTAATTGAA-TTAGGTTAAGGTTAGAGTTTTTAATT
* *
32236213 -TTGGG-TAGGGTTAGGGTTTTTAATTGAATTGGGTTAGGGTTAGAGTTTTTAATT
1 ATTGGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAAGGTTAGAGTTTTTAATT
* * *
32236267 AAATTGGGTTAGGGTTAGGGTTTTTAACTGAATTGGGTTAGGGTTAG
1 --ATTGGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAAGGTTAG
32236314 GAATAAACTT
Statistics
Matches: 90, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
54 42 0.47
55 6 0.07
57 5 0.06
58 37 0.41
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.45
Consensus pattern (56 bp):
ATTGGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAAGGTTAGAGTTTTTAATT
Found at i:32236250 original size:23 final size:24
Alignment explanation
Indices: 32236196--32236253 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 24
32236186 GTTAGGTTAA
**
32236196 GGTTAGGGTTTTTAATTTTGGGTAG
1 GGTTAGGGTTTTTAA-TTTGAATAG
*
32236221 GGTTAGGGTTTTTAA-TTGAATTG
1 GGTTAGGGTTTTTAATTTGAATAG
32236244 GGTTAGGGTT
1 GGTTAGGGTT
32236254 AGAGTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 15 0.50
25 15 0.50
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.47
Consensus pattern (24 bp):
GGTTAGGGTTTTTAATTTGAATAG
Found at i:32236842 original size:18 final size:18
Alignment explanation
Indices: 32236816--32236856 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
32236806 GGACTCGAAA
32236816 AAGGATACATATAAGGGT
1 AAGGATACATATAAGGGT
*
32236834 AAGGGTACATATAAGGGT
1 AAGGATACATATAAGGGT
*
32236852 TAGGA
1 AAGGA
32236857 AACGCACTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.32, T:0.22
Consensus pattern (18 bp):
AAGGATACATATAAGGGT
Found at i:32237625 original size:7 final size:7
Alignment explanation
Indices: 32237613--32237638 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32237603 TATACATAAT
32237613 AATACTA
1 AATACTA
32237620 AATACTA
1 AATACTA
32237627 AATACTA
1 AATACTA
32237634 AATAC
1 AATAC
32237639 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:32238419 original size:79 final size:79
Alignment explanation
Indices: 32238288--32238445 Score: 289
Period size: 79 Copynumber: 2.0 Consensus size: 79
32238278 CTAGATTGGG
* *
32238288 CAGACCTGATGACTGGGTGTCCGTCCACCGGCAATCCCAATTGCAGATGGACATCTTCTAGAGTG
1 CAGACCCGATGACTGGGTGCCCGTCCACCGGCAATCCCAATTGCAGATGGACATCTTCTAGAGTG
32238353 ATAGTGCACTCTCC
66 ATAGTGCACTCTCC
*
32238367 CAGACCCGGTGACTGGGTGCCCGTCCACCGGCAATCCCAATTGCAGATGGACATCTTCTAGAGTG
1 CAGACCCGATGACTGGGTGCCCGTCCACCGGCAATCCCAATTGCAGATGGACATCTTCTAGAGTG
32238432 ATAGTGCACTCTCC
66 ATAGTGCACTCTCC
32238446 ACATGGAAGA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (79 bp):
CAGACCCGATGACTGGGTGCCCGTCCACCGGCAATCCCAATTGCAGATGGACATCTTCTAGAGTG
ATAGTGCACTCTCC
Found at i:32238923 original size:22 final size:22
Alignment explanation
Indices: 32238895--32238964 Score: 131
Period size: 22 Copynumber: 3.2 Consensus size: 22
32238885 TATGGATTTG
32238895 AGAGAATTTTGGAAGGAAATTA
1 AGAGAATTTTGGAAGGAAATTA
32238917 AGAGAATTTTGGAAGGAAATTA
1 AGAGAATTTTGGAAGGAAATTA
*
32238939 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTA
32238961 AGAG
1 AGAG
32238965 GAAATTGAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (22 bp):
AGAGAATTTTGGAAGGAAATTA
Found at i:32238967 original size:95 final size:96
Alignment explanation
Indices: 32238856--32239042 Score: 313
Period size: 95 Copynumber: 2.0 Consensus size: 96
32238846 TATTTTAAAA
*
32238856 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTGGAAGGAAATTAAGAG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTCGGAAGGAAATTAAGAG
*
32238921 AATTTTGGAAGGAAATTAAGA-GAATTTTGG
66 AATTTTGGAAAGAAATTAAGAGGAATTTTGG
* * *
32238951 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTCGGAAGGAAATTGAGGG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTCGGAAGGAAATTAAGAG
*
32239016 AATTTTGGAAAGAAATTGAGAGGAATT
66 AATTTTGGAAAGAAATTAAGAGGAATT
32239043 GAGAGGAAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
95 80 0.94
96 5 0.06
ACGTcount: A:0.44, C:0.01, G:0.28, T:0.27
Consensus pattern (96 bp):
AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTCGGAAGGAAATTAAGAG
AATTTTGGAAAGAAATTAAGAGGAATTTTGG
Found at i:32239012 original size:22 final size:22
Alignment explanation
Indices: 32238987--32239042 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
32238977 AAATATGGAT
*
32238987 TTGAGAGAATTTCGGAAGGAAA
1 TTGAGAGAATTTCGGAAAGAAA
* *
32239009 TTGAGGGAATTTTGGAAAGAAA
1 TTGAGAGAATTTCGGAAAGAAA
32239031 TTGAGAGGAATT
1 TTGAGA-GAATT
32239043 GAGAGGAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 24 0.83
23 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.32, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTCGGAAAGAAA
Found at i:32239059 original size:12 final size:11
Alignment explanation
Indices: 32239027--32239059 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
32239017 ATTTTGGAAA
32239027 GAAATTGAGAG
1 GAAATTGAGAG
32239038 G-AATTGAGAG
1 GAAATTGAGAG
32239048 GAAATATGAGAG
1 GAAAT-TGAGAG
32239060 AGGATTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 4 0.20
12 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.18
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:32243185 original size:21 final size:21
Alignment explanation
Indices: 32243161--32243201 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32243151 CTTTTCATTC
*
32243161 AATTAATTATCGAAACTTTAG
1 AATTAATTAACGAAACTTTAG
**
32243182 AATTTCTTAACGAAACTTTA
1 AATTAATTAACGAAACTTTA
32243202 ATACTAACTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.39
Consensus pattern (21 bp):
AATTAATTAACGAAACTTTAG
Found at i:32245258 original size:17 final size:17
Alignment explanation
Indices: 32245231--32245271 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
32245221 GGTCCAAAAT
*
32245231 TTTTAACCTTTTTAATCC
1 TTTT-ACCTTTTTAATCA
32245249 TTTTACCTTTTTAATCA
1 TTTTACCTTTTTAATCA
32245266 TTTTAC
1 TTTTAC
32245272 TTCTTCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTACCTTTTTAATCA
Found at i:32251453 original size:5 final size:5
Alignment explanation
Indices: 32251436--32251467 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
32251426 TGAGTTACTT
32251436 AATTA AA-TA AATTA AATTA AATTA AATTA AAT
1 AATTA AATTA AATTA AATTA AATTA AATTA AAT
32251468 AGTATTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTA
Found at i:32259331 original size:20 final size:23
Alignment explanation
Indices: 32259292--32259333 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 23
32259282 TGATTTAATT
32259292 TATTAAATTTATTAAAATTTAAC
1 TATTAAATTTATTAAAATTTAAC
32259315 TATT-AATTT-TT-AAATTTAA
1 TATTAAATTTATTAAAATTTAA
32259334 TGTTAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 2 0.11
22 5 0.26
23 4 0.21
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTAAATTTATTAAAATTTAAC
Found at i:32259769 original size:3 final size:3
Alignment explanation
Indices: 32259761--32259787 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32259751 AAATTACCTA
32259761 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
32259788 TTGTTGTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32262462 original size:28 final size:27
Alignment explanation
Indices: 32262422--32262498 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 27
32262412 CACGTGAAAA
* *
32262422 AAAAATAAAAAATTTTTAAATTTTAAT
1 AAAAATAAGAAATATTTAAATTTTAAT
* *
32262449 AAAATATAAGAAATATTTAATTTTTATT
1 AAAA-ATAAGAAATATTTAAATTTTAAT
*
32262477 AAAAATTAGAAAAATATTTAAA
1 AAAAA-TA-AGAAATATTTAAA
32262499 ATATTTAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 5 0.12
28 25 0.61
29 11 0.27
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (27 bp):
AAAAATAAGAAATATTTAAATTTTAAT
Found at i:32262499 original size:9 final size:9
Alignment explanation
Indices: 32262487--32262539 Score: 88
Period size: 9 Copynumber: 5.8 Consensus size: 9
32262477 AAAAATTAGA
32262487 AAAATATTT
1 AAAATATTT
32262496 AAAATATTT
1 AAAATATTT
32262505 AAAATATTT
1 AAAATATTT
32262514 AAAATATTT
1 AAAATATTT
*
32262523 AAAATATAT
1 AAAATATTT
32262532 AGAAATAT
1 A-AAATAT
32262540 AGAAAAATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
9 36 0.86
10 6 0.14
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (9 bp):
AAAATATTT
Found at i:32262499 original size:18 final size:18
Alignment explanation
Indices: 32262485--32262549 Score: 67
Period size: 18 Copynumber: 3.5 Consensus size: 18
32262475 TTAAAAATTA
32262485 GAAAAATATTTAAAATAT
1 GAAAAATATTTAAAATAT
**
32262503 TTAAAATATTTAAAATAT
1 GAAAAATATTTAAAATAT
** *
32262521 TTAAAATATATAGAAATAT
1 GAAAAATATTTA-AAATAT
32262540 AGAAAAATAT
1 -GAAAAATAT
32262550 ATATAATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
18 27 0.68
19 6 0.15
20 7 0.17
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (18 bp):
GAAAAATATTTAAAATAT
Found at i:32262503 original size:27 final size:27
Alignment explanation
Indices: 32262473--32262549 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 27
32262463 ATTTAATTTT
32262473 TATTAAAAATTAGAAAAATATTTAAAA
1 TATTAAAAATTAGAAAAATATTTAAAA
*
32262500 TATTTAAAATATT--TAAAATATTTAAAA
1 TA-TTAAAA-ATTAGAAAAATATTTAAAA
*
32262527 TATATAGAAATATAGAAAAATAT
1 TAT-TAAAAAT-TAGAAAAATAT
32262550 ATATAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
26 3 0.07
27 22 0.54
28 6 0.15
29 10 0.24
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (27 bp):
TATTAAAAATTAGAAAAATATTTAAAA
Found at i:32262947 original size:27 final size:27
Alignment explanation
Indices: 32262858--32262956 Score: 78
Period size: 27 Copynumber: 3.6 Consensus size: 27
32262848 ATTTTTTACG
* *
32262858 ATTTTTTTCTAACTTTTAGTAAATTTTA
1 ATTTTTTTATAACTTTTA-TTAATTTTA
* *
32262886 AGTTTTTGTAT-A-TTTTATTAAAGTTTA
1 A-TTTTTTTATAACTTTTATT-AATTTTA
* *
32262913 ATAATTTTTATAACTTTTATTGATTTTA
1 AT-TTTTTTATAACTTTTATTAATTTTA
*
32262941 A-TTTTTTATAATTTTT
1 ATTTTTTTATAACTTTT
32262957 TATCACATGT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
26 15 0.27
27 18 0.32
28 9 0.16
29 14 0.25
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (27 bp):
ATTTTTTTATAACTTTTATTAATTTTA
Found at i:32273642 original size:52 final size:52
Alignment explanation
Indices: 32273548--32273651 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
32273538 ATATTTTTCT
*
32273548 TGGACCATTTGTACTCTTCATCCAATAATACGAAATCCCAGTCGTCCACTAA
1 TGGACCATTTGTACTCTTCATCCAATAACACGAAATCCCAGTCGTCCACTAA
* * * * * **
32273600 TGGATCATTTGTACTCTTTATTCGATAACACGACATTTCAGTCGTCCACTAA
1 TGGACCATTTGTACTCTTCATCCAATAACACGAAATCCCAGTCGTCCACTAA
32273652 CATCTAGGGT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (52 bp):
TGGACCATTTGTACTCTTCATCCAATAACACGAAATCCCAGTCGTCCACTAA
Found at i:32278247 original size:11 final size:11
Alignment explanation
Indices: 32278176--32278261 Score: 61
Period size: 11 Copynumber: 7.6 Consensus size: 11
32278166 CACTTTCACT
*
32278176 TTTTCTCTTTTT
1 TTTT-TCTTTTC
32278188 TTTTTCTATTT-
1 TTTTTCT-TTTC
*
32278199 TTTTTCAATTTC
1 TTTTTC-TTTTC
*
32278211 TTTTTCTCATTC
1 TTTTTCT-TTTC
*
32278223 -TTTGCTTTTGC
1 TTTTTCTTTT-C
32278234 TTTTTCTTTTC
1 TTTTTCTTTTC
*
32278245 TTTTTC-ATTC
1 TTTTTCTTTTC
32278255 TTTTTCT
1 TTTTTCT
32278262 CTTGTTTGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
10 11 0.18
11 25 0.42
12 24 0.40
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.74
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:32278261 original size:6 final size:6
Alignment explanation
Indices: 32278174--32278250 Score: 52
Period size: 6 Copynumber: 13.2 Consensus size: 6
32278164 TTCACTTTCA
* * ** **
32278174 CTTTTT CTCTTTT TTTTTT CTATTT -TTTTT CAATTT CTTTTT CTCATT
1 CTTTTT CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
* *
32278222 C-TTTG CTTTTG CTTTTT C-TTTT CTTTTT C
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C
32278251 ATTCTTTTTC
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
5 11 0.21
6 37 0.70
7 5 0.09
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (6 bp):
CTTTTT
Found at i:32287589 original size:25 final size:27
Alignment explanation
Indices: 32287519--32287591 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 27
32287509 ATCTCAATTT
*
32287519 TTTTTAAAAATAAAAAAAAAACAATAGAA
1 TTTTTAAAAA-AAAATAAAAACAATA-AA
* **
32287548 TTTTTCAAAAATTATAAAAAC-AT-AA
1 TTTTTAAAAAAAAATAAAAACAATAAA
*
32287573 TTTTTAAAAAAACATAAAA
1 TTTTTAAAAAAAAATAAAA
32287592 TTCAAAAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 18 0.49
27 2 0.05
28 8 0.22
29 9 0.24
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.30
Consensus pattern (27 bp):
TTTTTAAAAAAAAATAAAAACAATAAA
Found at i:32293489 original size:20 final size:20
Alignment explanation
Indices: 32293464--32293503 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32293454 CGTAAAATAA
* *
32293464 TTTCTGGGAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
32293484 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
32293504 GAAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:32298417 original size:22 final size:22
Alignment explanation
Indices: 32298391--32298435 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32298381 CCAATATGTG
32298391 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32298413 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32298435 T
1 T
32298436 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32300272 original size:85 final size:86
Alignment explanation
Indices: 32300122--32300471 Score: 313
Period size: 85 Copynumber: 4.1 Consensus size: 86
32300112 AGAAATAAAT
* * * * * * *
32300122 GCCGCTAAA-AGTCATGACCTTTAGCGGCGATTTTTCCACAAACACAGCTA-AAGGTCATGACTT
1 GCCGCTAAAGA-TCATGACTTTTAGCGGCGCTTATCCCACAAACGCCGCTATAA-ATCATGACTT
32300185 TTAGCGGCGCTTTTCTCACAATC
64 TTAGCGGCGCTTTTCTCACAATC
* *
32300208 GCCGCTAAAGATCATGACTTTTAGTGGCGCTTAT-CCACAAACGTCGCTATAAATCATGACTTTT
1 GCCGCTAAAGATCATGACTTTTAGCGGCGCTTATCCCACAAACGCCGCTATAAATCATGACTTTT
* * *
32300272 AGCGGCGC-TTTCCCATAAAC
66 AGCGGCGCTTTTCTCACAATC
* * * * * *
32300292 GCCACTATAGGTCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCATCACTTTT
1 GCCGCTAAAGATCATGACTTTTAGCGGCGCTTATCCCACAAACGCCGCTATAAATCATGACTTTT
32300357 AGCGGCGCTTTTCTCACAAAT-
66 AGCGGCGCTTTTCTCAC-AATC
* * * * * ** * *
32300378 GCCGCTATAGAACA-GA-TCTTTAGCGACTCTTTTTCTTACAAACGCCGCTATAGAA-CA-AACC
1 GCCGCTAAAGATCATGACT-TTTAGCGGCGC-TTATCCCACAAACGCCGCTATA-AATCATGACT
* * *
32300439 TTTAGCTGCGCTTTTCACACAAAC
63 TTTAGCGGCGCTTTTCTCACAATC
32300463 GCCGCTAAA
1 GCCGCTAAA
32300472 AACATATCTT
Statistics
Matches: 219, Mismatches: 36, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
84 41 0.19
85 105 0.48
86 69 0.32
87 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (86 bp):
GCCGCTAAAGATCATGACTTTTAGCGGCGCTTATCCCACAAACGCCGCTATAAATCATGACTTTT
AGCGGCGCTTTTCTCACAATC
Found at i:32300382 original size:43 final size:43
Alignment explanation
Indices: 32300133--32300469 Score: 353
Period size: 43 Copynumber: 7.9 Consensus size: 43
32300123 CCGCTAAAAG
* * * * * *
32300133 TCATGACCTTTAGCGGCGATTTT-TCCACAAACACAGCTAAAGG
1 TCATGACTTTTAGCGGCGCTTTTCT-CACAAACGCCGCTATAGA
* *
32300176 TCATGACTTTTAGCGGCGCTTTTCTCACAATCGCCGCTAAAGA
1 TCATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGA
* * * *
32300219 TCATGACTTTTAGTGGCGCTTATC-CACAAACGTCGCTATAAA
1 TCATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGA
* * * *
32300261 TCATGACTTTTAGCGGCGC-TTTCCCATAAACGCCACTATAGG
1 TCATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGA
*
32300303 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGA
* *
32300346 TCATCACTTTTAGCGGCGCTTTTCTCACAAATGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGA
* * * *
32300389 ACA-GA-TCTTTAGCGACTCTTTTTCTTACAAACGCCGCTATAGA
1 TCATGACT-TTTAGCGGCGC-TTTTCTCACAAACGCCGCTATAGA
* * * * *
32300432 ACA-AACCTTTAGCTGCGCTTTTCACACAAACGCCGCTA
1 TCATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTA
32300470 AAAACATATC
Statistics
Matches: 250, Mismatches: 38, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
41 4 0.02
42 92 0.37
43 153 0.61
44 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (43 bp):
TCATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGA
Found at i:32300452 original size:170 final size:170
Alignment explanation
Indices: 32300132--32300452 Score: 391
Period size: 170 Copynumber: 1.9 Consensus size: 170
32300122 GCCGCTAAAA
* * *
32300132 GTCATGACCTTTAGCGGCGATTTTTCCACAAACACAGCTAAAGGTCATGACTTTTAGCGGCGCTT
1 GTCATGACCTTTAGCGGCGATTTTCCCACAAACACAGCTAAAGATCATCACTTTTAGCGGCGCTT
* * * *
32300197 TTCTCACAATCGCCGCTAAAGATCATGACTTTTAGTGGCGCTTATCCACAAACGTCGCTATAAAT
66 TTCTCACAATCGCCGCTAAAGAACATGACTTTTAGCGACGCTTATCCACAAACGCCGCTATAAAT
* *
32300262 CATGACTTTTAGCGGCGCTTTCCCATAAACGCCACTATAG
131 CATAACCTTTAGCGGCGCTTTCCCATAAACGCCACTATAG
* * * * *
32300302 GTCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCATCACTTTTAGCGGCGCTT
1 GTCATGACCTTTAGCGGCGATTTTCCCACAAACACAGCTAAAGATCATCACTTTTAGCGGCGCTT
* * * *
32300367 TTCTCACAAAT-GCCGCTATAGAACA-GA-TCTTTAGCGACTCTTTTTCTTACAAACGCCGCTAT
66 TTCTCAC-AATCGCCGCTAAAGAACATGACT-TTTAGCGACGC-TTATC-CACAAACGCCGCTAT
*
32300429 AGAA-CA-AACCTTTAGCTGCGCTTT
127 A-AATCATAACCTTTAGCGGCGCTTT
32300453 TCACACAAAC
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
168 1 0.01
169 10 0.08
170 95 0.75
171 19 0.15
172 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (170 bp):
GTCATGACCTTTAGCGGCGATTTTCCCACAAACACAGCTAAAGATCATCACTTTTAGCGGCGCTT
TTCTCACAATCGCCGCTAAAGAACATGACTTTTAGCGACGCTTATCCACAAACGCCGCTATAAAT
CATAACCTTTAGCGGCGCTTTCCCATAAACGCCACTATAG
Found at i:32301255 original size:3 final size:3
Alignment explanation
Indices: 32301247--32301274 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32301237 CAAATGAATA
32301247 TAC TAC TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC T
32301275 GATATCAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TAC
Found at i:32303006 original size:26 final size:26
Alignment explanation
Indices: 32302957--32303006 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
32302947 ATAAAAACCT
* *
32302957 AGAAAAGAAGCTAACTAACCTCCAAA
1 AGAAAAGAAGCTAACAAACATCCAAA
32302983 AGAAAAGAAGCTAGA-AAACATCCA
1 AGAAAAGAAGCTA-ACAAACATCCA
32303007 TTGGGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.56, C:0.20, G:0.14, T:0.10
Consensus pattern (26 bp):
AGAAAAGAAGCTAACAAACATCCAAA
Found at i:32303485 original size:16 final size:16
Alignment explanation
Indices: 32303463--32303531 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
32303453 TTTGGTTCGC
32303463 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
32303479 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
32303495 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
32303512 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
32303528 TGTA
1 TGTA
32303532 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:32303509 original size:33 final size:32
Alignment explanation
Indices: 32303463--32303531 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
32303453 TTTGGTTCGC
32303463 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
32303495 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
32303528 TGTA
1 TGTA
32303532 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:32303596 original size:44 final size:45
Alignment explanation
Indices: 32303512--32303602 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
32303502 GGATTAGAGG
* * *
32303512 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
32303557 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
32303601 TG
1 TG
32303603 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:32303788 original size:18 final size:17
Alignment explanation
Indices: 32303767--32303801 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32303757 TTATTATTAA
*
32303767 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32303785 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32303802 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32303923 original size:16 final size:17
Alignment explanation
Indices: 32303902--32303942 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
32303892 TTTTAATTAA
32303902 ATTAGAGGCGTATT-GG
1 ATTAGAGGCGTATTGGG
*
32303918 ATTAGAGGTGTATTGGG
1 ATTAGAGGCGTATTGGG
32303935 ATTAGAGG
1 ATTAGAGG
32303943 TGTAATAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.27, C:0.02, G:0.39, T:0.32
Consensus pattern (17 bp):
ATTAGAGGCGTATTGGG
Found at i:32303938 original size:17 final size:16
Alignment explanation
Indices: 32303902--32303946 Score: 72
Period size: 17 Copynumber: 2.8 Consensus size: 16
32303892 TTTTAATTAA
*
32303902 ATTAGAGGCGTATTGG
1 ATTAGAGGTGTATTGG
32303918 ATTAGAGGTGTATTGGG
1 ATTAGAGGTGTATT-GG
32303935 ATTAGAGGTGTA
1 ATTAGAGGTGTA
32303947 ATAGCTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.27, C:0.02, G:0.38, T:0.33
Consensus pattern (16 bp):
ATTAGAGGTGTATTGG
Found at i:32304204 original size:18 final size:17
Alignment explanation
Indices: 32304183--32304217 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32304173 TTATTATTTA
*
32304183 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32304201 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32304218 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32304211 original size:28 final size:27
Alignment explanation
Indices: 32304141--32304213 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
32304131 TTTATTATCA
*
32304141 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
32304169 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
32304196 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
32304214 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:32304351 original size:18 final size:17
Alignment explanation
Indices: 32304330--32304364 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32304320 TTATTATTAA
*
32304330 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32304348 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32304365 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32304376 original size:147 final size:149
Alignment explanation
Indices: 32304102--32304376 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
32304092 ATGATTATTG
*
32304102 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
32304167 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
32304232 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
* *
32304251 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTACTCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
32304314 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
32304377 ATATTCTTAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 94 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:32304472 original size:18 final size:17
Alignment explanation
Indices: 32304432--32304484 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
32304422 AAATATAAAT
32304432 TAAAATA-ATAA-TT-A
1 TAAAATATATAATTTAA
*
32304446 TTAAATATAT--TTTAA
1 TAAAATATATAATTTAA
32304461 TTAAAATATATAATTTAA
1 -TAAAATATATAATTTAA
32304479 TAAAAT
1 TAAAAT
32304485 TCTAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 8 0.26
15 3 0.10
16 9 0.29
17 6 0.19
18 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAATATATAATTTAA
Found at i:32304542 original size:60 final size:59
Alignment explanation
Indices: 32304358--32304544 Score: 157
Period size: 60 Copynumber: 3.1 Consensus size: 59
32304348 ATATAATTTA
*
32304358 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTC-TAATAA-TAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* * ** * * * ** * * * *
32304419 GTAAAATAT-AAATTAA-AATAATAATTAT-TAAATATATTTTAATTAAAATATATAAT-TT
1 ATAAAAT-TCTAA-TAATAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT
32304477 AATAAAATTCTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 -ATAAAATTCTAATAAT-AATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
32304538 ATAAAAT
1 ATAAAAT
32304545 ATAATTTGAA
Statistics
Matches: 91, Mismatches: 26, Indels: 19
0.67 0.19 0.14
Matches are distributed among these distances:
58 5 0.05
59 37 0.41
60 38 0.42
61 10 0.11
62 1 0.01
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (59 bp):
ATAAAATTCTAATAATAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
Found at i:32304543 original size:119 final size:120
Alignment explanation
Indices: 32304310--32304604 Score: 495
Period size: 119 Copynumber: 2.5 Consensus size: 120
32304300 TTACTCATAT
*
32304310 TTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTAAA-ATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
32304375 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA
65 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
32304431 TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC-TAATAATC
1 TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
*
32304495 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAT
66 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
* *
32304550 TTGAAATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTAAAATAA-TAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
32304605 TAAAATAATT
Statistics
Matches: 166, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
119 108 0.65
120 53 0.32
121 5 0.03
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
Found at i:32307575 original size:90 final size:90
Alignment explanation
Indices: 32307422--32307681 Score: 511
Period size: 90 Copynumber: 2.9 Consensus size: 90
32307412 AAACATGCTC
32307422 TTAGGGATTTCACGGGGGAAATTTTTGGTAAAATGGCACGATTTCTCAAAATAAAATGATTTTTA
1 TTAGGGATTTCACGGGGGAAATTTTTGGTAAAATGGCACGATTTCTCAAAATAAAATGATTTTTA
32307487 CGGCGTTTTTATAAGCCATGGAAGA
66 CGGCGTTTTTATAAGCCATGGAAGA
32307512 TTAGGGATTTCACGGGGGAAATTTTTGGTAAAATGGCACGATTTCTCAAAATAAAATGATTTTTA
1 TTAGGGATTTCACGGGGGAAATTTTTGGTAAAATGGCACGATTTCTCAAAATAAAATGATTTTTA
32307577 CGGCGTTTTTATAAGCCATGGAAGA
66 CGGCGTTTTTATAAGCCATGGAAGA
32307602 TTAGGGATTTCACGGGGGAAATTTTTGGTAAAATGGCACGATTTCTCAAAATAAAATGATTTTTA
1 TTAGGGATTTCACGGGGGAAATTTTTGGTAAAATGGCACGATTTCTCAAAATAAAATGATTTTTA
32307667 CGGCGTTTTTTATAA
66 CGGCG-TTTTTATAA
32307682 AAACGCCGTT
Statistics
Matches: 169, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 160 0.95
91 9 0.05
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.35
Consensus pattern (90 bp):
TTAGGGATTTCACGGGGGAAATTTTTGGTAAAATGGCACGATTTCTCAAAATAAAATGATTTTTA
CGGCGTTTTTATAAGCCATGGAAGA
Found at i:32309159 original size:41 final size:41
Alignment explanation
Indices: 32309102--32309303 Score: 253
Period size: 41 Copynumber: 4.9 Consensus size: 41
32309092 TAAATCCCGG
* * **
32309102 GCATTAGTGGTGCTTTTTAAAAAACGCCGCTAAAGCCCTAA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTAA
* * *
32309143 GCATTAGCGGCGCTTTTCCAAAAACACCGCTAAATCCCTTA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTAA
* *
32309184 GCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGCCCTGA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTAA
* * * *
32309225 GCATTAGCGGCACTTTTTCAGAAACGCCGCTAAAGACC-AGA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTA-A
* *
32309266 GCATTAGCGGTGCTTTTCCAAAAACGCTGCTAAAGCCC
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCC
32309304 CGAAAGGTAA
Statistics
Matches: 137, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
41 137 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTAA
Found at i:32309218 original size:82 final size:81
Alignment explanation
Indices: 32309068--32309303 Score: 301
Period size: 82 Copynumber: 2.9 Consensus size: 81
32309058 AAATGTTTTT
** * * **
32309068 GCGGCGCTTTTTCAAAAACATTGCTAAATCCCGGGCATTAGTGGTGCTTTTTAAAAAACGCCGCT
1 GCGGCGCTTTTTCAAAAACACCGCTAAATCCCGAGCATTAGCGGTGCTTTTCCAAAAACGCCGCT
32309133 AAAGCCCTAAGCATTA
66 AAAGCCCTAAGCATTA
* * **
32309149 GCGGCGCTTTTCCAAAAACACCGCTAAATCCCTTAGCATTAGCGACGCTTTTCCAAAAACGCCGC
1 GCGGCGCTTTTTCAAAAACACCGCTAAATCCC-GAGCATTAGCGGTGCTTTTCCAAAAACGCCGC
*
32309214 TAAAGCCCTGAGCATTA
65 TAAAGCCCTAAGCATTA
* * * * * *
32309231 GCGGCACTTTTTCAGAAACGCCGCTAAAGACCAGAGCATTAGCGGTGCTTTTCCAAAAACGCTGC
1 GCGGCGCTTTTTCAAAAACACCGCTAAA-TCCCGAGCATTAGCGGTGCTTTTCCAAAAACGCCGC
32309296 TAAAGCCC
65 TAAAGCCC
32309304 CGAAAGGTAA
Statistics
Matches: 132, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
81 29 0.22
82 101 0.77
83 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (81 bp):
GCGGCGCTTTTTCAAAAACACCGCTAAATCCCGAGCATTAGCGGTGCTTTTCCAAAAACGCCGCT
AAAGCCCTAAGCATTA
Found at i:32309410 original size:39 final size:39
Alignment explanation
Indices: 32309367--32309471 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 39
32309357 AAAAATGCCT
*
32309367 CTAATGCTCATTTTTAACGGCGCTTTCGT-TAAAGCGCCG
1 CTAATGCTCATTTTTAACGGCG-TTTCATGTAAAGCGCCG
* * *
32309406 CTAATGCTCAATCTTTAGCGGCGTTTTATGTAAAGCGCCG
1 CTAATGCTC-ATTTTTAACGGCGTTTCATGTAAAGCGCCG
* * *
32309446 CTAATGCTTGATTTTTAGCCGCGTTT
1 CTAATGC-TCATTTTTAACGGCGTTT
32309472 TTTATTCAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
39 13 0.23
40 42 0.75
41 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (39 bp):
CTAATGCTCATTTTTAACGGCGTTTCATGTAAAGCGCCG
Found at i:32309440 original size:40 final size:40
Alignment explanation
Indices: 32309396--32309472 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
32309386 GCGCTTTCGT
*
32309396 TAAAGCGCCGCTAATGCTCAATCTTTAGCGGCGTTTTATG
1 TAAAGCGCCGCTAATGCTCAATCTTTAGCCGCGTTTTATG
** *
32309436 TAAAGCGCCGCTAATGCTTGATTTTTAGCCGCGTTTT
1 TAAAGCGCCGCTAATGCTCAATCTTTAGCCGCGTTTT
32309473 TTATTCAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (40 bp):
TAAAGCGCCGCTAATGCTCAATCTTTAGCCGCGTTTTATG
Found at i:32312055 original size:5 final size:5
Alignment explanation
Indices: 32312045--32312118 Score: 69
Period size: 6 Copynumber: 13.6 Consensus size: 5
32312035 ACAACTTTTT
*
32312045 TTTCA TTTCA -TTCA TTTCCA TTTCCA TTTCCG TTTCTA TTTCA TTTCA
1 TTTCA TTTCA TTTCA TTT-CA TTT-CA TTT-CA TTTC-A TTTCA TTTCA
32312093 TTTACA TTTACA TTTCCA TTTCA TTT
1 TTT-CA TTT-CA TTT-CA TTTCA TTT
32312119 AAATTATTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
4 4 0.06
5 22 0.35
6 36 0.58
ACGTcount: A:0.19, C:0.23, G:0.01, T:0.57
Consensus pattern (5 bp):
TTTCA
Found at i:32312074 original size:12 final size:11
Alignment explanation
Indices: 32312045--32312118 Score: 82
Period size: 12 Copynumber: 6.7 Consensus size: 11
32312035 ACAACTTTTT
32312045 TTTCATTT-CA
1 TTTCATTTCCA
32312055 -TTCATTTCCA
1 TTTCATTTCCA
*
32312065 TTTCCATTTCCG
1 TTT-CATTTCCA
32312077 TTTCTATTT-CA
1 TTTC-ATTTCCA
*
32312088 TTTCATTTACA
1 TTTCATTTCCA
32312099 TTTACATTTCCA
1 TTT-CATTTCCA
32312111 TTTCATTT
1 TTTCATTT
32312119 AAATTATTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
9 7 0.13
10 6 0.11
11 18 0.33
12 24 0.44
ACGTcount: A:0.19, C:0.23, G:0.01, T:0.57
Consensus pattern (11 bp):
TTTCATTTCCA
Found at i:32312100 original size:28 final size:29
Alignment explanation
Indices: 32312048--32312118 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 29
32312038 ACTTTTTTTT
* *
32312048 CATTT-CA-TTCATTTCCATTTCCATTTC
1 CATTTCCATTTCATTTCCATTTACATTTA
* *
32312075 CGTTTCTATTTCATTT-CATTTACATTTA
1 CATTTCCATTTCATTTCCATTTACATTTA
32312103 CATTTCCATTTCATTT
1 CATTTCCATTTCATTT
32312119 AAATTATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 4 0.11
28 25 0.69
29 7 0.19
ACGTcount: A:0.20, C:0.24, G:0.01, T:0.55
Consensus pattern (29 bp):
CATTTCCATTTCATTTCCATTTACATTTA
Found at i:32312153 original size:20 final size:20
Alignment explanation
Indices: 32312110--32312159 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
32312100 TTACATTTCC
32312110 ATTT-CATTTAAATTATTTT
1 ATTTCCATTTAAATTATTTT
*
32312129 TTTTCCATTTAAATT-TATTT
1 ATTTCCATTTAAATTAT-TTT
32312149 ATTTCTCATTT
1 ATTTC-CATTT
32312160 CATTTTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 4 0.15
20 17 0.65
21 5 0.19
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTCCATTTAAATTATTTT
Found at i:32312158 original size:21 final size:19
Alignment explanation
Indices: 32312113--32312159 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 19
32312103 CATTTCCATT
*
32312113 TCATTTAAATTATTTTTTT
1 TCATTTAAATTATTTTTTC
32312132 TCCATTTAAATTTATTTATTTC
1 T-CATTTAAA-TTATTT-TTTC
32312154 TCATTT
1 TCATTT
32312160 CATTTTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 1 0.04
20 8 0.33
21 11 0.46
22 4 0.17
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.64
Consensus pattern (19 bp):
TCATTTAAATTATTTTTTC
Found at i:32312171 original size:14 final size:15
Alignment explanation
Indices: 32312141--32312181 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
32312131 TTCCATTTAA
32312141 ATTT-ATTTATTTCTC
1 ATTTCATTT-TTTCTC
32312156 ATTTCATTTTTT-TC
1 ATTTCATTTTTTCTC
32312170 ATTTCAGTTTTT
1 ATTTCA-TTTTT
32312182 GTTTTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.33
15 12 0.50
16 4 0.17
ACGTcount: A:0.17, C:0.12, G:0.02, T:0.68
Consensus pattern (15 bp):
ATTTCATTTTTTCTC
Found at i:32312278 original size:19 final size:19
Alignment explanation
Indices: 32312227--32312278 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
32312217 ACTTTCATTC
*
32312227 CATTTCATAATAATAATTT
1 CATTTCATAATCATAATTT
*
32312246 CATTTCATAATCATAGTTT
1 CATTTCATAATCATAATTT
*
32312265 CATTTCATATTCAT
1 CATTTCATAATCAT
32312279 TTAACATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48
Consensus pattern (19 bp):
CATTTCATAATCATAATTT
Found at i:32312295 original size:23 final size:23
Alignment explanation
Indices: 32312262--32312346 Score: 98
Period size: 23 Copynumber: 3.5 Consensus size: 23
32312252 ATAATCATAG
32312262 TTTCATTTCATATTCATTTAACA
1 TTTCATTTCATATTCATTTAACA
* * *
32312285 TTTTATTTCATATTAATTACAAATTACA
1 TTTCATTTCATATTCATT-----TAACA
32312313 TTTCATTTCATATTCATTTAACA
1 TTTCATTTCATATTCATTTAACA
32312336 TTTCATTTCAT
1 TTTCATTTCAT
32312347 TAATTTTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
23 31 0.61
28 20 0.39
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTCATTTCATATTCATTTAACA
Found at i:32312373 original size:19 final size:18
Alignment explanation
Indices: 32312336--32312374 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
32312326 TCATTTAACA
*
32312336 TTTCATTTCATTAATTTT
1 TTTCATTTAATTAATTTT
*
32312354 TTTCATTTAAATTTATTTT
1 TTTCATTT-AATTAATTTT
32312373 TT
1 TT
32312375 CCTAATATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCATTTAATTAATTTT
Found at i:32312802 original size:22 final size:21
Alignment explanation
Indices: 32312770--32312872 Score: 106
Period size: 22 Copynumber: 4.9 Consensus size: 21
32312760 TGTTTTATTT
32312770 ATTT-ATTTCATTTCTATTTCC
1 ATTTCATTTCATTTC-ATTTCC
*
32312791 ATTTCATTTCATTTC--TTAC
1 ATTTCATTTCATTTCATTTCC
* *
32312810 ATTTCATTTAATTTGTATTTCC
1 ATTTCATTTCATTT-CATTTCC
*
32312832 ATTTCATTTTATTTCATTT-C
1 ATTTCATTTCATTTCATTTCC
32312852 ATTTTCATATTCATTTCATTT
1 A-TTTCAT-TTCATTTCATTT
32312873 AAATTATTTT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
19 16 0.23
20 2 0.03
21 14 0.20
22 37 0.54
ACGTcount: A:0.21, C:0.17, G:0.01, T:0.61
Consensus pattern (21 bp):
ATTTCATTTCATTTCATTTCC
Found at i:32312830 original size:41 final size:41
Alignment explanation
Indices: 32312770--32312855 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 41
32312760 TGTTTTATTT
*
32312770 ATTTATTTCATTTCTATTTCCATTTCATTTCATTTC-TTAC
1 ATTTATTTAATTTCTATTTCCATTTCATTTCATTTCATTAC
* * *
32312810 ATTTCATTTAATTTGTATTTCCATTTCATTTTATTTCATTTC
1 ATTT-ATTTAATTTCTATTTCCATTTCATTTCATTTCATTAC
32312852 ATTT
1 ATTT
32312856 TCATATTCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 4 0.10
41 29 0.73
42 7 0.17
ACGTcount: A:0.21, C:0.16, G:0.01, T:0.62
Consensus pattern (41 bp):
ATTTATTTAATTTCTATTTCCATTTCATTTCATTTCATTAC
Found at i:32312835 original size:6 final size:5
Alignment explanation
Indices: 32312766--32313092 Score: 118
Period size: 5 Copynumber: 61.6 Consensus size: 5
32312756 CCTTTGTTTT
*
32312766 ATTT- ATTT- ATTTC ATTTC TATTTCC ATTTC ATTTC ATTTC -TTAC ATTTC
1 ATTTC ATTTC ATTTC ATTTC -ATTT-C ATTTC ATTTC ATTTC ATTTC ATTTC
* * *
32312815 ATTTA ATTTGT ATTTCC ATTTC ATTTT ATTTC ATTTC ATTTTC ATATTC
1 ATTTC ATTT-C ATTT-C ATTTC ATTTC ATTTC ATTTC A-TTTC AT-TTC
* * * * * *
32312864 ATTTC ATTTA AATT- ATTT- TTTTC TATTTAA ATTT- AATTC TTTCTC
1 ATTTC ATTTC ATTTC ATTTC ATTTC -ATTT-C ATTTC ATTTC ATT-TC
* * * *
32312909 ATTTTC AATTT- -TTTT TTTTC ATTTC AGTTTTT GTCTTC ATTTC AATTT-
1 A-TTTC -ATTTC ATTTC ATTTC ATTTC A--TTTC AT-TTC ATTTC -ATTTC
* * * * *
32312957 ATAATTT ATTTTC ATTTAA ACTTTC ATTCC ATTTC ATAATC A--TA ATTTC
1 AT--TTC A-TTTC ATTT-C A-TTTC ATTTC ATTTC AT-TTC ATTTC ATTTC
* *
32313006 ATTTC ATATTC ATTTAAC ATTTC ATTTC ATTTC ATATTC ATTATAA ATTAC
1 ATTTC AT-TTC ATTT--C ATTTC ATTTC ATTTC AT-TTC ATT-T-C ATTTC
32313057 ATTTC ATTTC ATATTC ATTTAAC ATTTC ATTTC ATT
1 ATTTC ATTTC AT-TTC ATTT--C ATTTC ATTTC ATT
32313093 AATTTTTTTT
Statistics
Matches: 249, Mismatches: 36, Indels: 75
0.69 0.10 0.21
Matches are distributed among these distances:
3 5 0.02
4 22 0.09
5 124 0.50
6 73 0.29
7 24 0.10
8 1 0.00
ACGTcount: A:0.26, C:0.15, G:0.01, T:0.58
Consensus pattern (5 bp):
ATTTC
Found at i:32312882 original size:41 final size:40
Alignment explanation
Indices: 32312837--32312973 Score: 98
Period size: 41 Copynumber: 3.2 Consensus size: 40
32312827 TTTCCATTTC
32312837 ATTTTATTTCATTTCATTTTCATATTCATTTCATTTAAATT
1 ATTTTATTTCATTTCATTTT-ATATTCATTTCATTTAAATT
* * * *
32312878 ATTTT-TTTCTATTTAAATTTA-ATTCTTTCTCATTTTCAATT
1 ATTTTATTTC-ATTTCATTTTATATTCATT-TCA-TTTAAATT
* * * *
32312919 TTTTTTTTTCATTTCAGTTTTTGTCTTCATTTCAATTTATAATTT
1 ATTTTATTTCATTTCA--TTTTATATTCATTTC-ATTTA-AA-TT
32312964 ATTTTCATTT
1 ATTTT-ATTT
32312974 AAACTTTCAT
Statistics
Matches: 72, Mismatches: 13, Indels: 17
0.71 0.13 0.17
Matches are distributed among these distances:
39 6 0.08
40 8 0.11
41 29 0.40
42 4 0.06
43 8 0.11
44 8 0.11
45 6 0.08
46 3 0.04
ACGTcount: A:0.23, C:0.12, G:0.01, T:0.64
Consensus pattern (40 bp):
ATTTTATTTCATTTCATTTTATATTCATTTCATTTAAATT
Found at i:32312883 original size:27 final size:26
Alignment explanation
Indices: 32312766--32312883 Score: 73
Period size: 27 Copynumber: 4.4 Consensus size: 26
32312756 CCTTTGTTTT
*
32312766 ATTTATTTATTTCATTTCTATTTCCATTTC
1 ATTTA-TT-TTTCATTTC-ATTT-CATTTA
*
32312796 ATTTCA--TTTC-TTACATTTCATTTA
1 ATTT-ATTTTTCATTTCATTTCATTTA
* * * *
32312820 ATTTGTATTTCCATTTCATTTTATTTC
1 ATTTAT-TTTTCATTTCATTTCATTTA
32312847 ATTTCA-TTTTCATATTCATTTCATTTA
1 ATTT-ATTTTTCAT-TTCATTTCATTTA
*
32312874 AATTATTTTT
1 ATTTATTTTT
32312884 TTCTATTTAA
Statistics
Matches: 68, Mismatches: 12, Indels: 19
0.69 0.12 0.19
Matches are distributed among these distances:
24 9 0.13
25 4 0.06
26 13 0.19
27 37 0.54
30 4 0.06
31 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.01, T:0.62
Consensus pattern (26 bp):
ATTTATTTTTCATTTCATTTCATTTA
Found at i:32313034 original size:28 final size:28
Alignment explanation
Indices: 32313001--32313092 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
32312991 CATAATCATA
32313001 ATTTCATTTCATATTCATTTAACATTTC
1 ATTTCATTTCATATTCATTTAACATTTC
*
32313029 ATTTCATTTCATATTCATTATAA-ATTAC
1 ATTTCATTTCATATTCATT-TAACATTTC
32313057 ATTTCATTTCATATTCATTTAACATTTC
1 ATTTCATTTCATATTCATTTAACATTTC
32313085 ATTTCATT
1 ATTTCATT
32313093 AATTTTTTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
27 3 0.05
28 54 0.90
29 3 0.05
ACGTcount: A:0.30, C:0.16, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTTCATTTCATATTCATTTAACATTTC
Found at i:32313060 original size:23 final size:24
Alignment explanation
Indices: 32313033--32313093 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 24
32313023 CATTTCATTT
32313033 CATTTCATATTCATTA-TAAATT-A
1 CATTTCAT-TTCATTATTAAATTAA
* *
32313056 CATTTCATTTCA-TATTCATTTAA
1 CATTTCATTTCATTATTAAATTAA
32313079 CATTTCATTTCATTA
1 CATTTCATTTCATTA
32313094 ATTTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 2 0.06
22 8 0.24
23 21 0.64
24 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (24 bp):
CATTTCATTTCATTATTAAATTAA
Found at i:32313187 original size:15 final size:15
Alignment explanation
Indices: 32313167--32313206 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
32313157 AGTAGTCTCA
*
32313167 TTTCAATTTATCTTT
1 TTTCAATTCATCTTT
*
32313182 TTTCAATTCATTTTT
1 TTTCAATTCATCTTT
32313197 TTTCAATTCA
1 TTTCAATTCA
32313207 ATTCATATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTCAATTCATCTTT
Found at i:32313223 original size:22 final size:21
Alignment explanation
Indices: 32313183--32313231 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
32313173 TTTATCTTTT
*
32313183 TTCAATTCATTTTTTTTCA-A
1 TTCAATTCATTCTTTTTCATA
32313203 TTCAATTCATATGCTTTTTCATA
1 TTCAATTCAT-T-CTTTTTCATA
32313226 TT-AATT
1 TTCAATT
32313232 AGAAGTAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 10 0.40
21 1 0.04
22 11 0.44
23 3 0.12
ACGTcount: A:0.27, C:0.14, G:0.02, T:0.57
Consensus pattern (21 bp):
TTCAATTCATTCTTTTTCATA
Found at i:32313232 original size:750 final size:723
Alignment explanation
Indices: 32312070--32313647 Score: 2098
Period size: 750 Copynumber: 2.1 Consensus size: 723
32312060 TTCCATTTCC
*
32312070 ATTTCCGTTTCTATTTCATTTCATTTACATTTACAT-TTCCATTTCATTTAAATTATTTTTTTTC
1 ATTTCCATTTC-ATTTCATTTCATTTACATTTACATATTCCATTTCATTTAAATTA-TTTTTTTC
* * *
32312134 CATTTAAATTTATTTATTTCTCA-TTTCATTTTTTTCATTTCAGTTTTTGTTTTTATTTCAATTT
64 CATTTAAATTTAATTATTTCTCATTTTCATTTTTTTCATTTCAGTTTTTGTCTTCATTTCAATTT
*
32312198 ATAATTTATTTTTATTTAAACTTTCATTCCATTTCATAATAATAATTTCATTTCATAATCATAGT
129 ATAATTTATTTTCATTTAAACTTTCATTCCATTTCATAATAATAATTTCA-TT-AT-ATCATAG-
*
32312263 TTCATTTCATATTCATTTAACATTTTATTTCATATTAATTACAAATTACATTTCATTTCATATTC
190 TTCATTTCATA-TCATTT-ACATTTCATTTCATATTAATTACAAATTACATTTCATTTCATATTC
32312328 ATTTAACATTTCATTTCATTAATTTTTTTCATTTAAATTTATTTTTTCCTAATATACAAAAAAAA
253 ATTTAACATTTCATTTCATTAATTTTTTTCATTTAAATTTATTTTTTCCTAATATACAAAAAAAA
*
32312393 TCATATTAATCACAAGTAATCTCATTTGAAGTTATCTTTTTTCAATTCAATTTTTTTTTCAATTC
318 TCATATTAATCACAAGTAATCTCATTTCAAGTTATCTTTTTTCAATTCAATTTTTTTTTCAATTC
* * *
32312458 AGTTCATATTTTTTCATATTAATTAGAAGTAGTCTCAATATCAGGGTCATTTAAAGTTTTTTATA
383 AATTCATATTTTTTCATATTAATTAGAAGTAGTCTCAATATCAGGGTCATTTAAAATTTTTCATA
*
32312523 TTTTATTTAAATTTATTCTCAACTTAAATATCATTCCATTACAAAATTTTAAATTTCATTTAAA-
448 TTTTATTTAAATTTATTCTCAACTTAAATATCATTCAATTACAAAATTTTAAATTTCATTTAAAT
* *
32312587 TTCAAACAATTTCTCATTTCATTTTTTTGGGATTTTTTTTAGTTTTTTTTTTGGCCTAAAATGTT
513 TTCAAAAAAATTCTCATTTCATTTTTTTGGG---TTTTTTA-----------GGCCTAAAATGTT
* * * *
32312652 GGGTCAAATCCTAGGCACTAGGCCTACTGGTGCC-GACCATTGAT-TGTCCATTTGCCAGGCCTG
564 GGGTCAAATCCTAAGCACTAGGCCTACTGGTACCAG-CCACTGATAT-TCCATTTCCCAGGCCTG
* *
32312715 CCGCAGGT-TTGACGCAGGCCTGGTCTAACATGTCCTTTCATCCTT-TGTTTTATTTATTTATTT
627 ACGCA-GTCTT------GG-C----CTAACATGTCCTTTCAT-CTTCT-TTTT-TTT-TTCATTT
32312778 CATTTCTATTTCCATTTCATTTCATTTCTTACATTTCATTTAATTTGT
676 CATTTCTATTTCCATTTCATTTCATTTCTTACATTTCATTTAATTTGT
* * *
32312826 ATTTCCATTTCATTTTATTTCATTT-CATTTTCATATT-CATTTCATTTAAATTATTTTTTTCTA
1 ATTTCCATTTCATTTCATTTCATTTACATTTACATATTCCATTTCATTTAAATTATTTTTTTCCA
*
32312889 TTTAAATTTAATTCTTTCTCATTTTCAATTTTTTTTTTTCATTTCAGTTTTTGTCTTCATTTCAA
66 TTTAAATTTAATTATTTCTCATTTTC-A----TTTTTTTCATTTCAGTTTTTGTCTTCATTTCAA
*
32312954 TTTATAATTTATTTTCATTTAAACTTTCATTCCATTTCATAATCATAATTTCA-T-T-TCATA-T
126 TTTATAATTTATTTTCATTTAAACTTTCATTCCATTTCATAATAATAATTTCATTATATCATAGT
* *
32313015 TCATTT-A-A-CATTT-CATTTCATTTCATATTCATTATAAATTACATTTCATTTCATATTCATT
191 TCATTTCATATCATTTACATTTCATTTCATATTAATTACAAATTACATTTCATTTCATATTCATT
32313076 TAACATTTCATTTCATTAATTTTTTTTTCATTTAAATTTATATTTTTCCTAATATACAAAAAAAG
256 TAACATTTCATTTCATTAA--TTTTTTTCATTTAAATTTAT-TTTTTCCTAATATACAAAAAAA-
* * *
32313141 TTTCATATTAATCACAAGTAGTCTCATTTCAATTTATCTTTTTTCAATTC-A-TTTTTTTTCAAT
317 -ATCATATTAATCACAAGTAATCTCATTTCAAGTTATCTTTTTTCAATTCAATTTTTTTTTCAAT
32313204 TCAATTCATATGCTTTTTCATATTAATTAGAAGTAGTCTCAATATCAGGGTCATTTAAAATTTTT
381 TCAATTCATAT--TTTTTCATATTAATTAGAAGTAGTCTCAATATCAGGGTCATTTAAAATTTTT
* * *
32313269 CATATTTTATTTAAATTTTTTCTCAATTTAAATATCATTCAATTACAAAATTTTTAATTTCATTT
444 CATATTTTATTTAAATTTATTCTCAACTTAAATATCATTCAATTACAAAATTTTAAATTTCATTT
* * * *
32313334 AAATTTTAAAAAAATTCTCATTTCATTTTTTTGGGTTTTTTAGGCTTGAAATGTTGGGTCAAATT
509 AAATTTCAAAAAAATTCTCATTTCATTTTTTTGGGTTTTTTAGGCCTAAAATGTTGGGTCAAATC
* *
32313399 GTAAGCACTAGGCCTGCTGGTACCAGCCACTGATATTCCATTTCCCAGGCCTGACGCAGTCTTGG
574 CTAAGCACTAGGCCTACTGGTACCAGCCACTGATATTCCATTTCCCAGGCCTGACGCAGTCTTGG
* *
32313464 CCTAACATGTCCTTTTATCTTCTTTTTTTTTTCATTTCATTTCTATTTCTATTTCATTTCATTTC
639 CCTAACATGTCCTTTCATCTTCTTTTTTTTTTCATTTCATTTCTATTTCCATTTCATTTCATTTC
* *
32313529 TTCCATTTCATTTCATTTGT
704 TTACATTTCATTTAATTTGT
* *
32313549 ATTTCCATTTCATTTCATTTCATTTCCATTTCCATTTCCATTTCCATTTCATTTAAATTATTTTT
1 ATTTCCATTTCATTTCATTTCATTTACATTTACA--T--A-TTCCATTTCATTTAAATTATTTTT
*
32313614 TTCCATTTAAATTTAATTTTTTCTCATTTT-ATTT
61 TTCCATTTAAATTTAATTATTTCTCATTTTCATTT
32313648 AAATTATCTA
Statistics
Matches: 750, Mismatches: 46, Indels: 84
0.85 0.05 0.10
Matches are distributed among these distances:
723 75 0.10
724 13 0.02
725 7 0.01
726 18 0.02
728 2 0.00
729 2 0.00
730 50 0.07
731 2 0.00
736 2 0.00
737 69 0.09
738 2 0.00
745 64 0.09
747 25 0.03
748 51 0.07
749 2 0.00
750 160 0.21
751 35 0.05
753 33 0.04
754 28 0.04
755 17 0.02
756 10 0.01
757 1 0.00
759 82 0.11
ACGTcount: A:0.27, C:0.16, G:0.06, T:0.52
Consensus pattern (723 bp):
ATTTCCATTTCATTTCATTTCATTTACATTTACATATTCCATTTCATTTAAATTATTTTTTTCCA
TTTAAATTTAATTATTTCTCATTTTCATTTTTTTCATTTCAGTTTTTGTCTTCATTTCAATTTAT
AATTTATTTTCATTTAAACTTTCATTCCATTTCATAATAATAATTTCATTATATCATAGTTCATT
TCATATCATTTACATTTCATTTCATATTAATTACAAATTACATTTCATTTCATATTCATTTAACA
TTTCATTTCATTAATTTTTTTCATTTAAATTTATTTTTTCCTAATATACAAAAAAAATCATATTA
ATCACAAGTAATCTCATTTCAAGTTATCTTTTTTCAATTCAATTTTTTTTTCAATTCAATTCATA
TTTTTTCATATTAATTAGAAGTAGTCTCAATATCAGGGTCATTTAAAATTTTTCATATTTTATTT
AAATTTATTCTCAACTTAAATATCATTCAATTACAAAATTTTAAATTTCATTTAAATTTCAAAAA
AATTCTCATTTCATTTTTTTGGGTTTTTTAGGCCTAAAATGTTGGGTCAAATCCTAAGCACTAGG
CCTACTGGTACCAGCCACTGATATTCCATTTCCCAGGCCTGACGCAGTCTTGGCCTAACATGTCC
TTTCATCTTCTTTTTTTTTTCATTTCATTTCTATTTCCATTTCATTTCATTTCTTACATTTCATT
TAATTTGT
Found at i:32313298 original size:21 final size:21
Alignment explanation
Indices: 32313256--32313298 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
32313246 TATCAGGGTC
*
32313256 ATTTAAAATTTTTCATATTTT
1 ATTTAAAATTTTTCATAATTT
*
32313277 ATTTAAATTTTTTC-TCAATTT
1 ATTTAAAATTTTTCAT-AATTT
32313298 A
1 A
32313299 AATATCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTAAAATTTTTCATAATTT
Found at i:32313511 original size:6 final size:5
Alignment explanation
Indices: 32313493--32313602 Score: 123
Period size: 5 Copynumber: 20.6 Consensus size: 5
32313483 TTCTTTTTTT
*
32313493 TTTCA TTTCA TTTCTA TTTCTA TTTCA TTTCA TTTC- TTCCA TTTCA TTTCA
1 TTTCA TTTCA TTTC-A TTTC-A TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA
*
32313544 TTTGTA TTTCCA TTTCA TTTCA TTTCA TTTCCA TTTCCA TTTCCA TTTCCA
1 TTT-CA TTT-CA TTTCA TTTCA TTTCA TTT-CA TTT-CA TTT-CA TTT-CA
32313595 TTTCA TTT
1 TTTCA TTT
32313603 AAATTATTTT
Statistics
Matches: 96, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
4 3 0.03
5 51 0.53
6 42 0.44
ACGTcount: A:0.17, C:0.23, G:0.01, T:0.59
Consensus pattern (5 bp):
TTTCA
Found at i:32313518 original size:22 final size:21
Alignment explanation
Indices: 32313493--32313602 Score: 136
Period size: 22 Copynumber: 5.1 Consensus size: 21
32313483 TTCTTTTTTT
*
32313493 TTTCATTTCATTTCTATTTCTA
1 TTTCATTTCATTTC-ATTTCCA
32313515 TTTCATTTCATTTC--TTCCA
1 TTTCATTTCATTTCATTTCCA
*
32313534 TTTCATTTCATTTGTATTTCCA
1 TTTCATTTCATTT-CATTTCCA
32313556 TTTCATTTCATTTCATTTCCA
1 TTTCATTTCATTTCATTTCCA
32313577 TTTCCATTTCCATTTCCATTT-CA
1 TTT-CATTT-CATTT-CATTTCCA
32313600 TTT
1 TTT
32313603 AAATTATTTT
Statistics
Matches: 79, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
19 17 0.22
21 10 0.13
22 37 0.47
23 10 0.13
24 5 0.06
ACGTcount: A:0.17, C:0.23, G:0.01, T:0.59
Consensus pattern (21 bp):
TTTCATTTCATTTCATTTCCA
Found at i:32313622 original size:19 final size:21
Alignment explanation
Indices: 32313597--32313642 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
32313587 CATTTCCATT
*
32313597 TCATTTAAA-TTATTTTTTTC
1 TCATTTAAATTTAATTTTTTC
32313617 -CATTTAAATTTAATTTTTTC
1 TCATTTAAATTTAATTTTTTC
32313637 TCATTT
1 TCATTT
32313643 TATTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 10 0.43
21 5 0.22
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (21 bp):
TCATTTAAATTTAATTTTTTC
Found at i:32313649 original size:26 final size:26
Alignment explanation
Indices: 32313618--32313708 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
32313608 ATTTTTTTCC
32313618 ATTTAAATTTAATTTTTTCTCATTTT
1 ATTTAAATTTAATTTTTTCTCATTTT
* ** * *
32313644 ATTTAAATTATCTACCTTTCCATTCATTTC
1 ATTTAAATT-T-AATTTTTTC--TCATTTT
*
32313674 ATTTAAATTTATTTTTTTCTC-TTTT
1 ATTTAAATTTAATTTTTTCTCATTTT
32313699 CATTTAAATT
1 -ATTTAAATT
32313709 ATCTTTCTTC
Statistics
Matches: 49, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
25 3 0.06
26 20 0.41
27 1 0.02
28 9 0.18
29 1 0.02
30 15 0.31
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTAAATTTAATTTTTTCTCATTTT
Found at i:32313723 original size:56 final size:56
Alignment explanation
Indices: 32313617--32313723 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
32313607 TATTTTTTTC
*
32313617 CATTTAAATTTAATTTTTTCTCATTTTATTTAAATTATCTACCTTTCCATTCATTT
1 CATTTAAATTTAATTTTTTCTCATTTTATTTAAATTATCTACCTTCCCATTCATTT
* **
32313673 CATTTAAATTTATTTTTTTCTC-TTTTCATTTAAATTATCTTTCTTCCCATT
1 CATTTAAATTTAATTTTTTCTCATTTT-ATTTAAATTATCTACCTTCCCATT
32313724 TTAATTTACG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
55 4 0.09
56 42 0.91
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.59
Consensus pattern (56 bp):
CATTTAAATTTAATTTTTTCTCATTTTATTTAAATTATCTACCTTCCCATTCATTT
Found at i:32317034 original size:168 final size:164
Alignment explanation
Indices: 32316777--32317142 Score: 445
Period size: 169 Copynumber: 2.2 Consensus size: 164
32316767 TGAAAATTGA
* * *
32316777 ACTTGGTGCCTG-CCATCTAC-TAGCCAGCACCAAAAAATTTTTTTTTACAATACATTGGTGCTG
1 ACTTGGTGCC-GACCAT-TACATGGCCAGCACCAAAAAATTTTTTTTTACAATACACTGGTGCAG
* * * * * *
32316840 GTCATTAGTGTCCCAAAATAAAAAAAAA-TTTCCTTGGGGACCAAAAATTGTACTTGCTGCTGGC
64 GCCATCAGTGTCCCAAAATAAAAAAAAAGTGT-CTTGGGAACCAAAAATTGTACCTGCTGCCGGC
32316904 CATCTACTGACCAGCACAAAAAAACATTTTTTATTAAATGT
128 CATCTACTGACCAGCAC--AAAAA-ATTTTTT-TTAAATGT
* *
32316945 ACTTGGTGCCGACCATTACATGGCCATCACCAAAAATTTTAATTTTTTA-AATACACTGGTGCAG
1 ACTTGGTGCCGACCATTACATGGCCAGCACCAAAAAATTT--TTTTTTACAATACACTGGTGCAG
* * * *
32317009 GCCATCAGTGTCCCAAAGTAAAAAAAAAGTGTCTTGGGAACCGAAAATTGTACCTGGTGCCGGTC
64 GCCATCAGTGTCCCAAAATAAAAAAAAAGTGTCTTGGGAACCAAAAATTGTACCTGCTGCCGGCC
* *
32317074 ATCTACTGACCAGCACCAAAAATTTTTTTTTAATGT
129 ATCTACTGACCAGCACAAAAAATTTTTTTTAAATGT
*
32317110 -CTCTGGTGCCGACCATTACATGGCCAGAACCAA
1 ACT-TGGTGCCGACCATTACATGGCCAGCACCAA
32317143 TTTTTTTAAA
Statistics
Matches: 173, Mismatches: 19, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
164 2 0.01
165 35 0.20
166 7 0.04
167 8 0.05
168 31 0.18
169 81 0.47
170 9 0.05
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (164 bp):
ACTTGGTGCCGACCATTACATGGCCAGCACCAAAAAATTTTTTTTTACAATACACTGGTGCAGGC
CATCAGTGTCCCAAAATAAAAAAAAAGTGTCTTGGGAACCAAAAATTGTACCTGCTGCCGGCCAT
CTACTGACCAGCACAAAAAATTTTTTTTAAATGT
Found at i:32319899 original size:5 final size:6
Alignment explanation
Indices: 32319883--32319907 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32319873 GGAAGTAGTC
32319883 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
32319908 AAATATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:32324136 original size:98 final size:98
Alignment explanation
Indices: 32323957--32324153 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 98
32323947 GTACAATAAA
* *
32323957 ACTTTAAAAGAATATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGGTACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGGTACAATT
* *
32324022 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
* * *
32324055 ACTTTAAAAGAACATCCACTTGTCCAAGATTTAAGAAATCACATCCAATACGTTAGGGTACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGGTACAATT
* *
32324120 CCTTTAAAATCTCAAACTCGAAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
32324153 A
1 A
32324154 TAATTTTTAA
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGGTACAATT
CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
Found at i:32326364 original size:44 final size:44
Alignment explanation
Indices: 32326306--32326506 Score: 153
Period size: 44 Copynumber: 4.7 Consensus size: 44
32326296 CGATGTGATT
* *
32326306 TACTCTACTGCAACTTCAGAGAGATAAGATCTGCGATTATAATC
1 TACTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTATAATC
* * * * **
32326350 TGCTCCACTACAACTTCAGGGAGATAAG-GCT-AGA-TACGATC
1 TACTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTATAATC
* * * * *
32326391 TACT-CTCTGCATCTTCAGAGAGATAAGATATGAGGTTTTAATC
1 TACTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTATAATC
* * * * * *
32326434 CACTCCACTGTAACTTCAGGGAGATAGGATTATCG-GCTT-TAATC
1 TACTCCACTGCAACTTCAGAGAGATAAGA-TCT-GAGATTATAATC
* *
32326478 TGCTCCACCGCAACTTCAGAGAGATAAGA
1 TACTCCACTGCAACTTCAGAGAGATAAGA
32326507 CTTGCCATCT
Statistics
Matches: 119, Mismatches: 32, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
40 19 0.16
41 9 0.08
42 4 0.03
43 9 0.08
44 71 0.60
45 6 0.05
46 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (44 bp):
TACTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTATAATC
Found at i:32326371 original size:86 final size:85
Alignment explanation
Indices: 32326265--32326458 Score: 228
Period size: 84 Copynumber: 2.3 Consensus size: 85
32326255 TCTTGAGTCT
* * ** *
32326265 ACTCCACTGCAACTTTAGGGAGATTAAGACCCGATGTGATTTACTCTACTGCAACTTCAGAGAGA
1 ACTCCACTGCAACTTCAGGGAGATTAAGACCAGATACGATCTACTCT-CTGCAACTTCAGAGAGA
* * *
32326330 TAAGATCTGCGATTATAATCT
65 TAAGATATGAGATTATAATCC
* * * * *
32326351 GCTCCACTACAACTTCAGGGAGA-TAAGGCTAGATACGATCTACTCTCTGCATCTTCAGAGAGAT
1 ACTCCACTGCAACTTCAGGGAGATTAAGACCAGATACGATCTACTCTCTGCAACTTCAGAGAGAT
* *
32326415 AAGATATGAGGTTTTAATCC
66 AAGATATGAGATTATAATCC
*
32326435 ACTCCACTGTAACTTCAGGGAGAT
1 ACTCCACTGCAACTTCAGGGAGAT
32326459 AGGATTATCG
Statistics
Matches: 89, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
84 52 0.58
85 17 0.19
86 20 0.22
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (85 bp):
ACTCCACTGCAACTTCAGGGAGATTAAGACCAGATACGATCTACTCTCTGCAACTTCAGAGAGAT
AAGATATGAGATTATAATCC
Found at i:32326540 original size:45 final size:45
Alignment explanation
Indices: 32326477--32326594 Score: 143
Period size: 45 Copynumber: 2.6 Consensus size: 45
32326467 CGGCTTTAAT
*
32326477 CTGCTCCACCGCAACTTCAGAGAGATAAGACTTGCCAT-CTTCAGC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACTTGCCATGCTT-AGC
** *
32326522 CTGC-CTCACTGCAACTTCA-AGAGGATAAGACTTGCTTTGCTTAGT
1 CTGCTC-CACTGCAACTTCAGAGA-GATAAGACTTGCCATGCTTAGC
*
32326567 CTGCTCCACTGCAACTTCAGGGAGATAA
1 CTGCTCCACTGCAACTTCAGAGAGATAA
32326595 AACTACATGC
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
44 4 0.06
45 53 0.84
46 6 0.10
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (45 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGACTTGCCATGCTTAGC
Found at i:32326747 original size:45 final size:46
Alignment explanation
Indices: 32326673--32326794 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 46
32326663 CGGCTTTAAT
* *
32326673 CTGCTCCACCGCAACTTCA-GAGAGATAAGATTTGCCATCTTCAGC
1 CTGCTCCACTGCAACTTCAGGAGAGATAAGACTTGCCATCTTCAGC
** * * *
32326718 CTGC-CTCACTGCAACTTCAGGAG-GATAAGACTTGCTTTGTTTAGT
1 CTGCTC-CACTGCAACTTCAGGAGAGATAAGACTTGCCATCTTCAGC
32326763 CTGCTCCACTGCAACTTCAGG-GAGATAAGACT
1 CTGCTCCACTGCAACTTCAGGAGAGATAAGACT
32326795 AGATGCGATC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
44 2 0.03
45 60 0.91
46 4 0.06
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (46 bp):
CTGCTCCACTGCAACTTCAGGAGAGATAAGACTTGCCATCTTCAGC
Found at i:32328026 original size:31 final size:31
Alignment explanation
Indices: 32327988--32328050 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
32327978 TAACTGAGTC
* *
32327988 TGAATTTACAGGATTCGAAATATTTTTGCCA
1 TGAATTTACAGGATTCGAAAGAGTTTTGCCA
*
32328019 TGAATTTACAGGATTCGGAAGAGTTTTGCCA
1 TGAATTTACAGGATTCGAAAGAGTTTTGCCA
32328050 T
1 T
32328051 CCATTTCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.37
Consensus pattern (31 bp):
TGAATTTACAGGATTCGAAAGAGTTTTGCCA
Found at i:32330075 original size:17 final size:17
Alignment explanation
Indices: 32330024--32330082 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 17
32330014 CTTGGTTGTC
32330024 CAAATCAAGGCGCAACA
1 CAAATCAAGGCGCAACA
*
32330041 CAATTTTTCAATAGGCGCAACA
1 CAA---ATC-A-AGGCGCAACA
32330063 CAAATCAAGGCGCAACA
1 CAAATCAAGGCGCAACA
32330080 CAA
1 CAA
32330083 TCCAGTCGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
17 16 0.46
18 1 0.03
19 2 0.06
20 2 0.06
21 1 0.03
22 13 0.37
ACGTcount: A:0.44, C:0.27, G:0.15, T:0.14
Consensus pattern (17 bp):
CAAATCAAGGCGCAACA
Found at i:32338202 original size:98 final size:97
Alignment explanation
Indices: 32337964--32338161 Score: 297
Period size: 98 Copynumber: 2.0 Consensus size: 97
32337954 GTACAATAAA
* * * *
32337964 ACTTGAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGTACGATC
1 ACTTTAAAAGAACATCCAC-TATCCAAGAATCAAGAAATCACACCCAATACGTTAGGGCACGATC
*
32338029 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
65 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
* * *
32338062 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCAC-TATCCAAGAATCAAGAAATCACACCCAATACGTTAGGGCACGATC
32338127 CCTTTAAAAATCCCAAACTCGGAATATTTCCTTT
65 CCTTT-AAAATCCCAAACTCGGAATATTTCCTTT
32338161 A
1 A
32338162 TGATTTTTAA
Statistics
Matches: 95, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
98 67 0.71
99 28 0.29
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (97 bp):
ACTTTAAAAGAACATCCACTATCCAAGAATCAAGAAATCACACCCAATACGTTAGGGCACGATCC
CTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:32342706 original size:14 final size:14
Alignment explanation
Indices: 32342687--32342713 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32342677 CTTTTTCACA
32342687 AAACTTTATTGGAC
1 AAACTTTATTGGAC
32342701 AAACTTTATTGGA
1 AAACTTTATTGGA
32342714 ATTTGGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (14 bp):
AAACTTTATTGGAC
Found at i:32343819 original size:19 final size:20
Alignment explanation
Indices: 32343784--32343844 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
32343774 TAATTATTTA
* *
32343784 TTAAATTTAAT-TAAAATAT
1 TTAAATATAATATTAAATAT
32343803 TTAAACTAT-AT-TTAAATAT
1 TTAAA-TATAATATTAAATAT
32343822 TTAAATATAATAATTAAATAT
1 TTAAATATAAT-ATTAAATAT
32343843 TT
1 TT
32343845 GTAATTAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 3 0.08
19 21 0.58
20 2 0.06
21 10 0.28
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAAATATAATATTAAATAT
Found at i:32343840 original size:21 final size:21
Alignment explanation
Indices: 32343791--32343844 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 21
32343781 TTATTAAATT
32343791 TAATTAAAATATTTAAACTATA
1 TAATT-AAATATTTAAACTATA
32343813 T--TTAAATATTTAAA-TATAA
1 TAATTAAATATTTAAACTAT-A
32343832 TAATTAAATATTT
1 TAATTAAATATTT
32343845 GTAATTAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.10
19 13 0.45
20 2 0.07
21 10 0.34
22 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATTAAATATTTAAACTATA
Found at i:32344130 original size:17 final size:18
Alignment explanation
Indices: 32344108--32344141 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
32344098 ATCTTTATTG
32344108 CTTTTTAA-GGAAAAACA
1 CTTTTTAATGGAAAAACA
32344125 CTTTTTAATGGAAAAAC
1 CTTTTTAATGGAAAAAC
32344142 TCATCTGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (18 bp):
CTTTTTAATGGAAAAACA
Found at i:32348702 original size:27 final size:27
Alignment explanation
Indices: 32348640--32348703 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
32348630 GGACTACCAT
* * * *
32348640 AGGCGGCACCAATGGTGCCAGTGGCAA
1 AGGCAGCACCAAAGGTGCCACTGCCAA
* *
32348667 AGGCTGCACCAAAGGTGCCACTGCCAC
1 AGGCAGCACCAAAGGTGCCACTGCCAA
*
32348694 AGTCAGCACC
1 AGGCAGCACC
32348704 TGTAACACCC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.33, G:0.30, T:0.11
Consensus pattern (27 bp):
AGGCAGCACCAAAGGTGCCACTGCCAA
Found at i:32349471 original size:13 final size:13
Alignment explanation
Indices: 32349453--32349478 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32349443 ACTAACTTCG
32349453 TAAATATTTATGA
1 TAAATATTTATGA
32349466 TAAATATTTATGA
1 TAAATATTTATGA
32349479 GTCCAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TAAATATTTATGA
Found at i:32350231 original size:159 final size:158
Alignment explanation
Indices: 32349967--32350392 Score: 712
Period size: 159 Copynumber: 2.7 Consensus size: 158
32349957 AAAAAAGAAG
*
32349967 AAGAAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTCACTAAATTTATATAAAAAACACACTA
1 AAGAAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAACACACTA
* *
32350032 AAATAATACATTTCAAACATTATGTACTAAAATAATATAAAATAACA-AAATACGAAAATAGTAT
66 AAATAATACATTTCAAACATTATGTACTAAAATAATATAAAATAA-ATAAACACGAAAATAATAT
32350096 ATTTTTTGAAAGTAATAAAATCTGAAAAT
130 ATTTTTTGAAAGTAATAAAATCTGAAAAT
*
32350125 AAGAAAAATACGAATAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACT
1 AAGAAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATAT-AAAAAACACACT
* *
32350190 AAAATAATACATTTCAAACATTATGTACTAAAATAAAATAAAATAAATAGACACGAAAATAATAT
65 AAAATAATACATTTCAAACATTATGTACTAAAATAATATAAAATAAATAAACACGAAAATAATAT
32350255 ATTTTTTGAAAGTAATAAAATCTGAAAAT
130 ATTTTTTGAAAGTAATAAAATCTGAAAAT
* *
32350284 AAGAAAAATACGAACAAATGACCAAAATGAA-GGTTTTTTACTAAATTTATATAAAAAACACACT
1 AAGAAAAATACGAACAAAGGGCCAAAAT-AAGGGTTTTTTACTAAATTTATATAAAAAACACACT
* * *
32350348 AAATTAATACATTTCAAACTTTATGTAATAAAATAATATAAAATA
65 AAAATAATACATTTCAAACATTATGTACTAAAATAATATAAAATA
32350393 TAAAGTTTAA
Statistics
Matches: 252, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
158 104 0.41
159 146 0.58
160 2 0.01
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (158 bp):
AAGAAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAACACACTA
AAATAATACATTTCAAACATTATGTACTAAAATAATATAAAATAAATAAACACGAAAATAATATA
TTTTTTGAAAGTAATAAAATCTGAAAAT
Found at i:32350605 original size:128 final size:132
Alignment explanation
Indices: 32350407--32350662 Score: 367
Period size: 128 Copynumber: 2.0 Consensus size: 132
32350397 GTTTAAAATG
*
32350407 TATTAATTTAGTGTGTTTTTTTATATAAATTTAGTGAAAAACCCTCATTTTGGCAATTTGTTCGT
1 TATTAATTTAGTGTGTTGTTTTATATAAATTTAGTGAAAAACCCTCATTTTGGCAATTTGTTCGT
* * *
32350472 A-TTTT-TC-TTATTTTCGGATTTTATTATTTTAAAAAAATATATTATTTTCGTATTTTATTTTT
66 ATTTTTCTCTTTATTTTCGGATTTTATTACTTTAAAAAAATATACTATTTTCATATTTTATTTTT
32350534 TA
131 TA
* * *
32350536 TATTATTTTAGTGTG-TGTTTTATATAAATTTAGTGAAAAACCCTTATTTTGGCCATTTGTTCGT
1 TATTAATTTAGTGTGTTGTTTTATATAAATTTAGTGAAAAACCCTCATTTTGGCAATTTGTTCGT
* * * ** *
32350600 ATTTTTCTCTTTTTTTTTGGATTTTATTACTTTCAGTAAATATACTATTTTCATTTTTTATTT
66 ATTTTTCTCTTTATTTTCGGATTTTATTACTTTAAAAAAATATACTATTTTCATATTTTATTT
32350663 CTTTTTGTAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
128 47 0.42
129 18 0.16
130 2 0.02
131 44 0.40
ACGTcount: A:0.25, C:0.08, G:0.10, T:0.57
Consensus pattern (132 bp):
TATTAATTTAGTGTGTTGTTTTATATAAATTTAGTGAAAAACCCTCATTTTGGCAATTTGTTCGT
ATTTTTCTCTTTATTTTCGGATTTTATTACTTTAAAAAAATATACTATTTTCATATTTTATTTTT
TA
Found at i:32367403 original size:29 final size:30
Alignment explanation
Indices: 32367369--32367477 Score: 103
Period size: 33 Copynumber: 3.4 Consensus size: 30
32367359 AAATATGTTG
*
32367369 AATAATAATACTTAT-ATCTTTAATAATAC
1 AATAATAATACTTATAATATTTAATAATAC
32367398 AATAATAATACTTATAATATTTAATAATAATAC
1 AATAATAATACTTATAATA-TT--TAATAATAC
* *
32367431 AATAATAAAAATATTTAATAATATTTAATAATATTT
1 AATAAT---AATACTT-ATAATATTTAATAATA--C
32367467 AATAATAATAC
1 AATAATAATAC
32367478 AATAATAAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 16
0.77 0.05 0.19
Matches are distributed among these distances:
29 15 0.23
30 2 0.03
31 2 0.03
33 19 0.29
34 8 0.12
36 14 0.21
37 6 0.09
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (30 bp):
AATAATAATACTTATAATATTTAATAATAC
Found at i:32367416 original size:9 final size:10
Alignment explanation
Indices: 32367371--32367473 Score: 60
Period size: 10 Copynumber: 10.8 Consensus size: 10
32367361 ATATGTTGAA
32367371 TAATAATACT
1 TAATAATACT
32367381 T-AT-AT-CTT
1 TAATAATAC-T
*
32367389 TAATAATACAA
1 TAATAATAC-T
32367400 TAATAATACT
1 TAATAATACT
*
32367410 T-ATAATATT
1 TAATAATACT
*
32367419 TAATAATAAT
1 TAATAATACT
*
32367429 ACAATAATA--
1 -TAATAATACT
*
32367438 -AA-AATATT
1 TAATAATACT
*
32367446 TAATAATATT
1 TAATAATACT
*
32367456 TAATAATATT
1 TAATAATACT
32367466 TAATAATA
1 TAATAATA
32367474 ATACAATAAT
Statistics
Matches: 77, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
6 4 0.05
7 3 0.04
8 4 0.05
9 14 0.18
10 35 0.45
11 17 0.22
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (10 bp):
TAATAATACT
Found at i:32367426 original size:10 final size:10
Alignment explanation
Indices: 32367400--32367473 Score: 77
Period size: 10 Copynumber: 7.8 Consensus size: 10
32367390 AATAATACAA
*
32367400 TAATAATACT
1 TAATAATATT
32367410 T-ATAATATT
1 TAATAATATT
*
32367419 TAATAATAATA
1 TAATAAT-ATT
*
32367430 CAATAATA--
1 TAATAATATT
32367438 -AA-AATATT
1 TAATAATATT
32367446 TAATAATATT
1 TAATAATATT
32367456 TAATAATATT
1 TAATAATATT
32367466 TAATAATA
1 TAATAATA
32367474 ATACAATAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
6 4 0.07
7 2 0.04
9 10 0.18
10 31 0.56
11 8 0.15
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (10 bp):
TAATAATATT
Found at i:32367434 original size:27 final size:28
Alignment explanation
Indices: 32367369--32367453 Score: 84
Period size: 27 Copynumber: 3.0 Consensus size: 28
32367359 AAATATGTTG
* *
32367369 AATAATAATACTTAT-ATCTTTAATAAT
1 AATAACAATACTTATAATATTTAATAAT
*
32367396 ACAATAATAATACTTATAATATTTAATAAT
1 --AATAACAATACTTATAATATTTAATAAT
* * *
32367426 AAT-ACAATAATAAAAATATTTAATAAT
1 AATAACAATACTTATAATATTTAATAAT
32367453 A
1 A
32367454 TTTAATAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
27 21 0.42
28 3 0.06
29 15 0.30
30 11 0.22
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (28 bp):
AATAACAATACTTATAATATTTAATAAT
Found at i:32367468 original size:47 final size:46
Alignment explanation
Indices: 32367400--32367491 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 46
32367390 AATAATACAA
32367400 TAATAATACTTATAATATTTAATAATAATACAATAATAAAAATATT
1 TAATAATACTTATAATATTTAATAATAATACAATAATAAAAATATT
*
32367446 TAATAATATTTAATAATATTTAATAATAATACAATAATAAAAATAT
1 TAATAATACTT-ATAATATTTAATAATAATACAATAATAAAAATAT
32367492 GTTTAACAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 10 0.23
47 34 0.77
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (46 bp):
TAATAATACTTATAATATTTAATAATAATACAATAATAAAAATATT
Found at i:32367470 original size:27 final size:27
Alignment explanation
Indices: 32367370--32367470 Score: 87
Period size: 30 Copynumber: 3.6 Consensus size: 27
32367360 AATATGTTGA
* * *
32367370 ATAATAATACTTATATCTTTAATAATACA
1 ATAATAATATTTA-ATATTTAATAATA-T
32367399 ATAATAATACTTATAATATTTAATAATAAT
1 ATAATAATA-TT-TAATATTTAATAAT-AT
* **
32367429 ACAATAATA-AAAATATTTAATAATAT
1 ATAATAATATTTAATATTTAATAATAT
*
32367455 TTAATAATATTTAATA
1 ATAATAATATTTAATA
32367471 ATAATACAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
26 9 0.16
27 17 0.29
29 9 0.16
30 20 0.34
31 3 0.05
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (27 bp):
ATAATAATATTTAATATTTAATAATAT
Found at i:32370870 original size:14 final size:15
Alignment explanation
Indices: 32370846--32370874 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32370836 TTACAAAATG
32370846 AAATGAAAAGAAAAA
1 AAATGAAAAGAAAAA
32370861 AAAT-AAAAGAAAAA
1 AAATGAAAAGAAAAA
32370875 TGCTCCCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (15 bp):
AAATGAAAAGAAAAA
Found at i:32371732 original size:29 final size:29
Alignment explanation
Indices: 32371656--32371736 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 29
32371646 ATTTGTTAAT
* * *
32371656 GCACTTCGGTGCCACTCTGTTTTGATAAA
1 GCACTTCGATGCCACTCTATTCTGATAAA
** * **
32371685 GCACTTCGATGTTATTCTATTCTGATATT
1 GCACTTCGATGCCACTCTATTCTGATAAA
*
32371714 GTACTTCGATGCCACTCTATTCT
1 GCACTTCGATGCCACTCTATTCT
32371737 ATGATTATAC
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (29 bp):
GCACTTCGATGCCACTCTATTCTGATAAA
Found at i:32376880 original size:45 final size:46
Alignment explanation
Indices: 32376829--32376965 Score: 135
Period size: 43 Copynumber: 3.0 Consensus size: 46
32376819 TATGTGTTCT
32376829 CATGTAAGACCACGTCTGGGACGATGGCATCGATATATGTGATTA-
1 CATGTAAGACCACGTCTGGGACGATGGCATCGATATATGTGATTAG
* *
32376874 CGTGTAAGACC-CTGT-TCGGGAC-AGTGGCATCG--ATATGAGA-TAG
1 CATGTAAGACCAC-GTCT-GGGACGA-TGGCATCGATATATGTGATTAG
*
32376917 CATGTAAGACCACGTCTGGGACGTTGGCATTGTTCGATATATGTGATTA
1 CATGTAAGACCACGTCTGGGACGATGGCA----TCGATATATGTGATTA
32376966 TCCGAGTATC
Statistics
Matches: 73, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
42 2 0.03
43 29 0.40
44 5 0.07
45 25 0.34
47 3 0.04
49 7 0.10
50 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (46 bp):
CATGTAAGACCACGTCTGGGACGATGGCATCGATATATGTGATTAG
Found at i:32380825 original size:22 final size:23
Alignment explanation
Indices: 32380799--32380842 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
32380789 AATCCTTAAA
*
32380799 AAATAAATATTAAA-ACTAAAAC
1 AAATAAATACTAAATACTAAAAC
32380821 AAATAAATACTAAATACTAAAA
1 AAATAAATACTAAATACTAAAA
32380843 TATTCATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (23 bp):
AAATAAATACTAAATACTAAAAC
Found at i:32386787 original size:40 final size:40
Alignment explanation
Indices: 32386714--32386833 Score: 95
Period size: 40 Copynumber: 3.0 Consensus size: 40
32386704 AAACTGTTCA
* *
32386714 TCCACGTCAGCAAATCGCGTCCT--CGTAGG-CGCGATTTGTG
1 TCCACGTAAGCAAATCGCG--CTGACGT-GGACGCGATTTCTG
*
32386754 TCCACGTAAGCAAATCGCGCTGACGTGGACGCGATGTCCTG
1 TCCACGTAAGCAAATCGCGCTGACGTGGACGCGAT-TTCTG
* ** *
32386795 -ACACGTACCCTGACATCGCGCTGACGTGGACGCGATTTC
1 TCCACGTAAGC--AAATCGCGCTGACGTGGACGCGATTTC
32386834 GCGAAAATGG
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
38 2 0.03
39 2 0.03
40 34 0.52
41 5 0.08
42 23 0.35
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.22
Consensus pattern (40 bp):
TCCACGTAAGCAAATCGCGCTGACGTGGACGCGATTTCTG
Found at i:32388086 original size:22 final size:23
Alignment explanation
Indices: 32388054--32388099 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
32388044 AGTAAAATAA
*
32388054 AAAATATAAAAAAATAGAAAAGT
1 AAAATATAAAAAAATAAAAAAGT
*
32388077 AAAATA-AAAAATATAAAAAAGT
1 AAAATATAAAAAAATAAAAAAGT
32388099 A
1 A
32388100 TGTAAGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (23 bp):
AAAATATAAAAAAATAAAAAAGT
Found at i:32388107 original size:30 final size:30
Alignment explanation
Indices: 32388027--32388096 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
32388017 TGTATAAAGT
*
32388027 ATATAAAAAATTAGAAAAGTAAAATAAAAA
1 ATATAAAAAAATAGAAAAGTAAAATAAAAA
32388057 ATATAAAAAAATAGAAAAGTAAAATAAAAA
1 ATATAAAAAAATAGAAAAGTAAAATAAAAA
32388087 ATATAAAAAA
1 ATATAAAAAA
32388097 GTATGTAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.19
Consensus pattern (30 bp):
ATATAAAAAAATAGAAAAGTAAAATAAAAA
Found at i:32388278 original size:12 final size:12
Alignment explanation
Indices: 32388261--32388301 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
32388251 AATACAAAGG
*
32388261 TAATGATAGTAA
1 TAATGATAATAA
32388273 TAATGATAATATA
1 TAATGATAATA-A
32388286 TAAT-ATAATAA
1 TAATGATAATAA
32388297 TAATG
1 TAATG
32388302 TTTTCTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 5 0.19
12 16 0.62
13 5 0.19
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.37
Consensus pattern (12 bp):
TAATGATAATAA
Found at i:32388735 original size:7 final size:8
Alignment explanation
Indices: 32388716--32388745 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
32388706 ATTTACAGTA
*
32388716 AAAAAAAG
1 AAAAAAAT
32388724 AAAAAAAT
1 AAAAAAAT
32388732 AAAAAAAT
1 AAAAAAAT
32388740 AAAAAA
1 AAAAAA
32388746 GATGAGAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.03, T:0.07
Consensus pattern (8 bp):
AAAAAAAT
Found at i:32396279 original size:26 final size:26
Alignment explanation
Indices: 32396224--32396280 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
32396214 TCTAAAATTA
* ** *
32396224 AAAG-ATAAATAAATTTGGAATAATT
1 AAAGAATAAAAAAATTAAGAATAAAT
*
32396249 TAAGAATAAAAAAATTAAGAATAAAT
1 AAAGAATAAAAAAATTAAGAATAAAT
32396275 AAAGAA
1 AAAGAA
32396281 AGATGGAAGG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.25
Consensus pattern (26 bp):
AAAGAATAAAAAAATTAAGAATAAAT
Found at i:32398147 original size:17 final size:16
Alignment explanation
Indices: 32398106--32398149 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
32398096 TACCCAAAAC
*
32398106 AAATTATAAATTTATAA
1 AAATTATAAATATAT-A
*
32398123 AAAATATAAATATATA
1 AAATTATAAATATATA
32398139 AAATGTATAAA
1 AAAT-TATAAA
32398150 AAAAATTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (16 bp):
AAATTATAAATATATA
Found at i:32399256 original size:23 final size:23
Alignment explanation
Indices: 32399225--32399280 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
32399215 TCTTTGTATA
* *
32399225 TTTA-AAATTTAGTATTTTTATT
1 TTTATAAATTTAGTATCTCTATT
*
32399247 TTTATAAATTTAGTCTCTCTATT
1 TTTATAAATTTAGTATCTCTATT
32399270 TTT-TAAATTTA
1 TTTATAAATTTA
32399281 AAAGTTCAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (23 bp):
TTTATAAATTTAGTATCTCTATT
Found at i:32404885 original size:7 final size:6
Alignment explanation
Indices: 32404869--32404933 Score: 51
Period size: 6 Copynumber: 10.2 Consensus size: 6
32404859 TGTTTCCTGC
* *
32404869 AAAAAT AAAAAT GAAAAT -AAAAT AAAATAGT AAAAAT AAATAAT AATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA-A-T AAAAAT AAA-AAT AAAAAT
*
32404919 AGGAAAAT TAAAAT A
1 A--AAAAT AAAAAT A
32404934 TTTTTTTTTC
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
5 5 0.10
6 27 0.56
7 7 0.15
8 9 0.19
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:32412877 original size:22 final size:22
Alignment explanation
Indices: 32412848--32412900 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
32412838 TAAATTCAGA
*
32412848 TAAA-TAAAAAAATTCAAATGT
1 TAAATTAAAAAAATTCAAATAT
**
32412869 TAAATTAAAAAGGTTCAAATAT
1 TAAATTAAAAAAATTCAAATAT
*
32412891 CAAATTAAAA
1 TAAATTAAAA
32412901 TCCCTTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (22 bp):
TAAATTAAAAAAATTCAAATAT
Found at i:32415922 original size:30 final size:30
Alignment explanation
Indices: 32415888--32415991 Score: 86
Period size: 30 Copynumber: 3.4 Consensus size: 30
32415878 TATCTATAAT
32415888 TAAATTTGAGGATCAAATTGATTGAATTTG
1 TAAATTTGAGGATCAAATTGATTGAATTTG
* * * * *
32415918 TAAATGTGAAGGGTTAAATTTATTGAATTATT
1 TAAATTTG-AGGATCAAATTGATTGAATT-TG
* *
32415950 TAGAA-TT-AGGATCAAATTGATAGAATATG
1 TA-AATTTGAGGATCAAATTGATTGAATTTG
*
32415979 TAAGTATTGAGGA
1 TAAAT-TTGAGGA
32415992 CTAAATCTAT
Statistics
Matches: 55, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
28 1 0.02
29 3 0.05
30 24 0.44
31 21 0.38
32 4 0.07
33 2 0.04
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.38
Consensus pattern (30 bp):
TAAATTTGAGGATCAAATTGATTGAATTTG
Found at i:32417171 original size:8 final size:9
Alignment explanation
Indices: 32417160--32417199 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
32417150 AATAACAAAA
32417160 AAAAAAC-T
1 AAAAAACTT
32417168 AAAAAA-TT
1 AAAAAACTT
32417176 AAAAAACTT
1 AAAAAACTT
32417185 AAAAAACTT
1 AAAAAACTT
32417194 AAAAAA
1 AAAAAA
32417200 ATATTTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.43
9 17 0.57
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (9 bp):
AAAAAACTT
Found at i:32417181 original size:18 final size:20
Alignment explanation
Indices: 32417158--32417200 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 20
32417148 AAAATAACAA
32417158 AAAAAAAAC-TAAAAAA-TT
1 AAAAAAAACTTAAAAAACTT
32417176 --AAAAAACTTAAAAAACTT
1 AAAAAAAACTTAAAAAACTT
32417194 AAAAAAA
1 AAAAAAA
32417201 TATTTATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
16 7 0.33
17 7 0.33
18 2 0.10
20 5 0.24
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAAAAAACTTAAAAAACTT
Found at i:32419002 original size:3 final size:3
Alignment explanation
Indices: 32418996--32419022 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32418986 ACTATGAGGG
32418996 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
32419023 TGATGATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:32421977 original size:5 final size:5
Alignment explanation
Indices: 32421967--32422018 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
32421957 TGAAGTTTTC
* *
32421967 TCGAA TCGAA TCGAG T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGA-A TCGAA -TCGAA TCGAA TCGAA TCGAA TCGAA
32422018 T
1 T
32422019 ATATTTGTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
4 2 0.05
5 33 0.80
6 6 0.15
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:32422018 original size:26 final size:26
Alignment explanation
Indices: 32421967--32422018 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32421957 TGAAGTTTTC
* *
32421967 TCGAATCGAATCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
32421993 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
32422019 ATATTTGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:32433016 original size:18 final size:17
Alignment explanation
Indices: 32432995--32433040 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
32432985 TTTTTTAAGA
32432995 GTTTAAGGTTTTTCTAGG
1 GTTT-AGGTTTTTCTAGG
*
32433013 GTTTAGGATTTTTGTAGG
1 GTTTAGG-TTTTTCTAGG
32433031 GTTTAGGTTT
1 GTTTAGGTTT
32433041 GGAAATTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.15, C:0.02, G:0.30, T:0.52
Consensus pattern (17 bp):
GTTTAGGTTTTTCTAGG
Done.