Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 103 of 185
Found at i:32436696 original size:24 final size:24
Alignment explanation
Indices: 32436668--32436716 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
32436658 CCTCCTCCGA
32436668 TAGAATATATGGCTTGCCATGATG
1 TAGAATATATGGCTTGCCATGATG
32436692 TAGAATATATGGCTTGCCATGATG
1 TAGAATATATGGCTTGCCATGATG
32436716 T
1 T
32436717 CTGAACCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (24 bp):
TAGAATATATGGCTTGCCATGATG
Found at i:32439735 original size:16 final size:16
Alignment explanation
Indices: 32439698--32439735 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
32439688 AAAGTTTTTA
32439698 TTTTTTCTGTTTCTCC
1 TTTTTTCTGTTTCTCC
* *
32439714 TATTTTCTTTTTCTCC
1 TTTTTTCTGTTTCTCC
32439730 TTTTTT
1 TTTTTT
32439736 TCTCTGCCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTTCTGTTTCTCC
Found at i:32447439 original size:28 final size:27
Alignment explanation
Indices: 32447372--32447439 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 27
32447362 TTTTGTGTGC
* * * * *
32447372 GCCACAAAGGCGTTCTTTTCTTCATTT
1 GCCACAAAGGCTTTCTTTCCTTAAATA
32447399 GCCAC-AAGAGCTTTCCTTTCCTTAAATA
1 GCCACAAAG-GCTTT-CTTTCCTTAAATA
32447427 GCCACAAAGGCTT
1 GCCACAAAGGCTT
32447440 CTATCTCATA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
26 3 0.09
27 9 0.27
28 18 0.55
29 3 0.09
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (27 bp):
GCCACAAAGGCTTTCTTTCCTTAAATA
Found at i:32447461 original size:27 final size:27
Alignment explanation
Indices: 32447427--32447527 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
32447417 TCCTTAAATA
* *
32447427 GCCACAAAGGCTTCTATCTCATAGATT
1 GCCACAAAGACTTCTATTTCATAGATT
* *
32447454 GCCACAAAAACTTCTATTTTATAGATT
1 GCCACAAAGACTTCTATTTCATAGATT
* * *
32447481 GCCACAAAGATTTCCATTTCATAAATT
1 GCCACAAAGACTTCTATTTCATAGATT
* *
32447508 GTCACCAAAGGCTTCTATTT
1 GCCA-CAAAGACTTCTATTT
32447528 TCTAGCGCAT
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
27 48 0.80
28 12 0.20
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.34
Consensus pattern (27 bp):
GCCACAAAGACTTCTATTTCATAGATT
Found at i:32449358 original size:41 final size:41
Alignment explanation
Indices: 32449213--32449356 Score: 216
Period size: 41 Copynumber: 3.5 Consensus size: 41
32449203 GACTTTTGGT
* * *
32449213 CTGCTAGACTTAAAGTCCGAAATGTTTCACCGGTATCAAGC
1 CTGCTAGACATAAAGTCTGAAATGTTTCACCGGCATCAAGC
*
32449254 CTGCTAGACATAAAGTCTGAAATGTTTCACCGACATCAAGC
1 CTGCTAGACATAAAGTCTGAAATGTTTCACCGGCATCAAGC
* *
32449295 CTGCTAGACATAAAGTCTGAATTGTTTCACCGGCATCTAGC
1 CTGCTAGACATAAAGTCTGAAATGTTTCACCGGCATCAAGC
* *
32449336 CTACTAGACATAGAGTCTGAA
1 CTGCTAGACATAAAGTCTGAA
32449357 TTATCTCACT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (41 bp):
CTGCTAGACATAAAGTCTGAAATGTTTCACCGGCATCAAGC
Found at i:32450552 original size:246 final size:246
Alignment explanation
Indices: 32450118--32450608 Score: 982
Period size: 246 Copynumber: 2.0 Consensus size: 246
32450108 TGTATATACT
32450118 TATATACCACTTATACTTTAACTAAATTTAAAGGTTTATATAAGTATAAACCTATATATATATAT
1 TATATACCACTTATACTTTAACTAAATTTAAAGGTTTATATAAGTATAAACCTATATATATATAT
32450183 ATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTTTA
66 ATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTTTA
32450248 AGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATAAC
131 AGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATAAC
32450313 ATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGACA
196 ATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGACA
32450364 TATATACCACTTATACTTTAACTAAATTTAAAGGTTTATATAAGTATAAACCTATATATATATAT
1 TATATACCACTTATACTTTAACTAAATTTAAAGGTTTATATAAGTATAAACCTATATATATATAT
32450429 ATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTTTA
66 ATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTTTA
32450494 AGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATAAC
131 AGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATAAC
32450559 ATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGAC
196 ATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGAC
32450609 GATTAGTCGA
Statistics
Matches: 245, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 245 1.00
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (246 bp):
TATATACCACTTATACTTTAACTAAATTTAAAGGTTTATATAAGTATAAACCTATATATATATAT
ATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTTTA
AGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATAAC
ATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGACA
Found at i:32451618 original size:626 final size:626
Alignment explanation
Indices: 32450427--32451678 Score: 2479
Period size: 626 Copynumber: 2.0 Consensus size: 626
32450417 ATATATATAT
32450427 ATATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTT
1 ATATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTT
32450492 TAAGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATA
66 TAAGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATA
32450557 ACATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGACGATTAGTCGACGA
131 ACATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGACGATTAGTCGACGA
32450622 CTTTAGCTTTTCCCCGATCCAACTCCGATTTCTTTGGTTCTTAATCTAAATATATTCAAAATGAG
196 CTTTAGCTTTTCCCCGATCCAACTCCGATTTCTTTGGTTCTTAATCTAAATATATTCAAAATGAG
32450687 CTAAATTAAATATTATTACATTCAATTTAGTCCAAAAACACATAAATGGGAAAATTACCATTTTA
261 CTAAATTAAATATTATTACATTCAATTTAGTCCAAAAACACATAAATGGGAAAATTACCATTTTA
32450752 CCCCTAACATTTACACTTTTTGCAATTTAGTCCCTATTGCATAAAACACAAAATACACAAAATTT
326 CCCCTAACATTTACACTTTTTGCAATTTAGTCCCTATTGCATAAAACACAAAATACACAAAATTT
32450817 GCCCACACTATACAAGGTTTGAATGTTCCTAGTGCTCATACAAGTCCACACATTTCGTTTATTTC
391 GCCCACACTATACAAGGTTTGAATGTTCCTAGTGCTCATACAAGTCCACACATTTCGTTTATTTC
32450882 ATATTTTAGTACCCCAAAAATTTAATTTTACAATTTAGCCCTAATTACTCAATTTCACCAAAAAT
456 ATATTTTAGTACCCCAAAAATTTAATTTTACAATTTAGCCCTAATTACTCAATTTCACCAAAAAT
32450947 TCAAAGACAATACATGTTAATCTTTCACATATCTTTCATATTTCATCATCAACTATCACAAAGCT
521 TCAAAGACAATACATGTTAATCTTTCACATATCTTTCATATTTCATCATCAACTATCACAAAGCT
32451012 CAAGCATTCATCAATGGCATATCACAAAATCATCACAAAAA
586 CAAGCATTCATCAATGGCATATCACAAAATCATCACAAAAA
32451053 ATATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTT
1 ATATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTT
32451118 TAAGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATA
66 TAAGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATA
32451183 ACATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGAC-ATTTAGTCGACG
131 ACATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGACGA-TTAGTCGACG
32451247 ACTTTAGCTTTTCCCCGATCCAACTCCGATTTCTTTGGTTCTTAATCTAAATATATTCAAAATGA
195 ACTTTAGCTTTTCCCCGATCCAACTCCGATTTCTTTGGTTCTTAATCTAAATATATTCAAAATGA
*
32451312 GCTAATTTAAATATTATTACATTCAATTTAGTCCAAAAACACATAAATGGGAAAATTACCATTTT
260 GCTAAATTAAATATTATTACATTCAATTTAGTCCAAAAACACATAAATGGGAAAATTACCATTTT
32451377 ACCCCTAACATTTACACTTTTTGCAATTTAGTCCCTATTGCATAAAACACAAAATACACAAAATT
325 ACCCCTAACATTTACACTTTTTGCAATTTAGTCCCTATTGCATAAAACACAAAATACACAAAATT
32451442 TGCCCACACTATACAAGGTTTGAATGTTCCTAGTGCTCATACAAGTCCACACATTTCGTTTATTT
390 TGCCCACACTATACAAGGTTTGAATGTTCCTAGTGCTCATACAAGTCCACACATTTCGTTTATTT
32451507 CATATTTTAGTACCCCAAAAATTTAATTTTACAATTTAGCCCTAATTACTCAATTTCACCAAAAA
455 CATATTTTAGTACCCCAAAAATTTAATTTTACAATTTAGCCCTAATTACTCAATTTCACCAAAAA
32451572 TTCAAAGACAATACATGTTAATCTTTCACATATCTTTCATATTTCATCATCAACTATCACAAAGC
520 TTCAAAGACAATACATGTTAATCTTTCACATATCTTTCATATTTCATCATCAACTATCACAAAGC
32451637 TCAAGCATTCATCAATGGCATATCACAAAATCATCACAAAAA
585 TCAAGCATTCATCAATGGCATATCACAAAATCATCACAAAAA
32451679 TCTAAAATTA
Statistics
Matches: 624, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
625 1 0.00
626 623 1.00
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.34
Consensus pattern (626 bp):
ATATTCTAACATTAATAATACATGTATATCATTCATACTTTATTTTATTTCAATCAATATACTTT
TAAGTTAAAGTTCAAAAAAAATACAATACATTTACATATATATATATATATATACCGATTTAATA
ACATTAAATAGCTAATAGACTTACCTCAGATAGTGAAAAATCGAAACCGGACGATTAGTCGACGA
CTTTAGCTTTTCCCCGATCCAACTCCGATTTCTTTGGTTCTTAATCTAAATATATTCAAAATGAG
CTAAATTAAATATTATTACATTCAATTTAGTCCAAAAACACATAAATGGGAAAATTACCATTTTA
CCCCTAACATTTACACTTTTTGCAATTTAGTCCCTATTGCATAAAACACAAAATACACAAAATTT
GCCCACACTATACAAGGTTTGAATGTTCCTAGTGCTCATACAAGTCCACACATTTCGTTTATTTC
ATATTTTAGTACCCCAAAAATTTAATTTTACAATTTAGCCCTAATTACTCAATTTCACCAAAAAT
TCAAAGACAATACATGTTAATCTTTCACATATCTTTCATATTTCATCATCAACTATCACAAAGCT
CAAGCATTCATCAATGGCATATCACAAAATCATCACAAAAA
Found at i:32462147 original size:3 final size:3
Alignment explanation
Indices: 32462134--32462179 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
32462124 TCATGATACC
*
32462134 ATT ATTT ATT ATT A-T ATT ATTT ATT ATC ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
32462180 TCTATATTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:32462154 original size:15 final size:15
Alignment explanation
Indices: 32462134--32462178 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
32462124 TCATGATACC
32462134 ATTATTTATTATTAT
1 ATTATTTATTATTAT
*
32462149 ATTATTTATTATCATT
1 ATTATTTATTATTA-T
32462165 ATTA-TTATTATTAT
1 ATTATTTATTATTAT
32462179 TTCTATATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 1 0.04
15 21 0.78
16 5 0.19
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTATTTATTATTAT
Found at i:32462233 original size:22 final size:23
Alignment explanation
Indices: 32462207--32462288 Score: 87
Period size: 22 Copynumber: 3.6 Consensus size: 23
32462197 GCATTGTTTT
32462207 TTTTATATAATATATATGCATT-
1 TTTTATATAATATATATGCATTA
* * *
32462229 TTTTATATAGTATACACGCATTA
1 TTTTATATAATATATATGCATTA
* *
32462252 TTTT-TATTATATATATGCATTTC
1 TTTTATATAATATATATGCA-TTA
*
32462275 TTTTATATAGTATA
1 TTTTATATAATATA
32462289 CGTATACCTG
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
22 30 0.64
23 10 0.21
24 7 0.15
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.54
Consensus pattern (23 bp):
TTTTATATAATATATATGCATTA
Found at i:32465552 original size:13 final size:13
Alignment explanation
Indices: 32465534--32465558 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32465524 GCTTCCACGT
32465534 TGCATTGCCTTGA
1 TGCATTGCCTTGA
32465547 TGCATTGCCTTG
1 TGCATTGCCTTG
32465559 TCACATCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (13 bp):
TGCATTGCCTTGA
Found at i:32465563 original size:54 final size:54
Alignment explanation
Indices: 32465493--32465599 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
32465483 GCTTCAACTT
* *
32465493 TGCATTGTCTTCTCACATCATGATCATGGTTGCTTCCACGTTGCATTGCCTTGA
1 TGCATTGCCTTCTCACATCATGAACATGGTTGCTTCCACGTTGCATTGCCTTGA
* * * *
32465547 TGCATTGCCTTGTCACATCATGAACATGGTTGGTTTCACGTTGCATTGTCTTG
1 TGCATTGCCTTCTCACATCATGAACATGGTTGCTTCCACGTTGCATTGCCTTG
32465600 TCACATCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (54 bp):
TGCATTGCCTTCTCACATCATGAACATGGTTGCTTCCACGTTGCATTGCCTTGA
Found at i:32465635 original size:44 final size:41
Alignment explanation
Indices: 32465547--32465635 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 41
32465537 ATTGCCTTGA
* *
32465547 TGCATTGCCTTGTCACATCATGAACATGGTTGGTTTCACGT
1 TGCATTGCCTTGTCACATCATGAACATGGTTGCTTCCACGT
*
32465588 TGCATTGTCTTGTCACATCATTGATTTA-ATGGTTGCTTCCACGT
1 TGCATTGCCTTGTCACATCA-TGA---ACATGGTTGCTTCCACGT
32465632 TGCA
1 TGCA
32465636 ATCTTTTTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
41 19 0.46
42 3 0.07
44 18 0.44
45 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.39
Consensus pattern (41 bp):
TGCATTGCCTTGTCACATCATGAACATGGTTGCTTCCACGT
Found at i:32475335 original size:6 final size:6
Alignment explanation
Indices: 32475320--32475351 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
32475310 AATAGAGAGC
32475320 AAAA-A AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA
32475352 GCAGTGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:32477129 original size:47 final size:47
Alignment explanation
Indices: 32477060--32477156 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
32477050 ACTTTGATGT
32477060 AGTTTACTAATCATTTAATAAAGGTTATAAATTTCTTAAACTCTTAG
1 AGTTTACTAATCATTTAATAAAGGTTATAAATTTCTTAAACTCTTAG
*
32477107 AGTTTATTAATCATTTAATAAAGGTTATAAATTTCTTAAACTCTTAG
1 AGTTTACTAATCATTTAATAAAGGTTATAAATTTCTTAAACTCTTAG
32477154 AGT
1 AGT
32477157 GATTTCGTCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (47 bp):
AGTTTACTAATCATTTAATAAAGGTTATAAATTTCTTAAACTCTTAG
Found at i:32481419 original size:244 final size:244
Alignment explanation
Indices: 32480990--32481460 Score: 816
Period size: 244 Copynumber: 1.9 Consensus size: 244
32480980 TAAATTATAA
* *
32480990 ATAAGCCCAAAATGAGATATTTTGAGTGGCATAAGCTGAGAAAAATAAGGAGAATTGGTGAAATA
1 ATAAGCCCAAAAGGAGATATTTTGAGTGGCATAAGCTGAGAAAAATAAGGAGAATTGATGAAATA
*
32481055 AGGGCAAAATGGGAAAATAACAAAATTTACTAAAATAAAAACGAGACCAAATTAGAATATCTAGA
66 AGGGCAAAATAGGAAAATAACAAAATTTACTAAAATAAAAACGAGACCAAATTAGAATATCTAGA
* *
32481120 ATTCTCTTCAGATTTTGTTCATTATCATCAACCAAAAACGTCCTAAGGGTTTATTCAAACTGGTA
131 ATTCTCTTCAGATTTTATTCATTATCATCAACCAAAAACATCCTAAGGGTTTATTCAAACTGGTA
32481185 TTTCATAATTTTTGCACCAAAAAATTCAAATAAGGAGGGACAAATTGTC
196 TTTCATAATTTTTGCACCAAAAAATTCAAATAAGGAGGGACAAATTGTC
* *
32481234 ATAAGCCCAAAAGGAGATATTTTGGGTGGCATAAGCTGAGAAAAATCAGGAGAATTGATGAAATA
1 ATAAGCCCAAAAGGAGATATTTTGAGTGGCATAAGCTGAGAAAAATAAGGAGAATTGATGAAATA
* * *
32481299 AGGGCAAAATAGGAAAATAACAAAATTTACTAAAATAAAAATGAGACTAAATTATAATATCTAGA
66 AGGGCAAAATAGGAAAATAACAAAATTTACTAAAATAAAAACGAGACCAAATTAGAATATCTAGA
* * *
32481364 ATTCTCTTCATATTTTATTCATTATCATCAGCCAAAAACATCCTAAGGGTTTATTCAAGCTGGTA
131 ATTCTCTTCAGATTTTATTCATTATCATCAACCAAAAACATCCTAAGGGTTTATTCAAACTGGTA
*
32481429 TTTCATAATTTTTGCACCAAAAAATTTAAATA
196 TTTCATAATTTTTGCACCAAAAAATTCAAATA
32481461 CGAAGCTAGA
Statistics
Matches: 213, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
244 213 1.00
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (244 bp):
ATAAGCCCAAAAGGAGATATTTTGAGTGGCATAAGCTGAGAAAAATAAGGAGAATTGATGAAATA
AGGGCAAAATAGGAAAATAACAAAATTTACTAAAATAAAAACGAGACCAAATTAGAATATCTAGA
ATTCTCTTCAGATTTTATTCATTATCATCAACCAAAAACATCCTAAGGGTTTATTCAAACTGGTA
TTTCATAATTTTTGCACCAAAAAATTCAAATAAGGAGGGACAAATTGTC
Found at i:32496581 original size:35 final size:35
Alignment explanation
Indices: 32496473--32496648 Score: 137
Period size: 35 Copynumber: 5.1 Consensus size: 35
32496463 TAAAGAGTGT
*
32496473 GCCCAACACTAGTCAGATAAACTGACAGAAGTTAC
1 GCCCAACACTAGTCAGATAAACTGACAGAAGTTGC
* * * * *
32496508 GTCCAACACTAGTTAGA-GAACCGA-AGATAGTTGT
1 GCCCAACACTAGTCAGATAAACTGACAGA-AGTTGC
* *
32496542 GCCCAGCACTAGTCAGATAAACTAACAGAAGTTGC
1 GCCCAACACTAGTCAGATAAACTGACAGAAGTTGC
* * * * **
32496577 GCCCAGCACTAGTCGGAT-AACCGAC-GATAATTAT
1 GCCCAACACTAGTCAGATAAACTGACAGA-AGTTGC
* * *
32496611 GCCCAGA-ACTAGTCAGATAAACTGGCAAAAATTGC
1 GCCCA-ACACTAGTCAGATAAACTGACAGAAGTTGC
32496646 GCC
1 GCC
32496649 AAGCGCTAGT
Statistics
Matches: 108, Mismatches: 26, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
33 5 0.05
34 46 0.43
35 53 0.49
36 4 0.04
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (35 bp):
GCCCAACACTAGTCAGATAAACTGACAGAAGTTGC
Found at i:32496587 original size:69 final size:69
Alignment explanation
Indices: 32496470--32496693 Score: 286
Period size: 69 Copynumber: 3.2 Consensus size: 69
32496460 ATATAAAGAG
* * * * * * *
32496470 TGTGCCCAACACTAGTCAGATAAACTGACAGAAGTTACGTCCAACACTAGTTAGAGAACCGAAGA
1 TGTGCCCAGCACTAGTCAGATAAACTGACAGAAGTTGCGCCCAGCACTAGTTGGATAACCGACGA
32496535 TAGT
66 TAGT
* *
32496539 TGTGCCCAGCACTAGTCAGATAAACTAACAGAAGTTGCGCCCAGCACTAGTCGGATAACCGACGA
1 TGTGCCCAGCACTAGTCAGATAAACTGACAGAAGTTGCGCCCAGCACTAGTTGGATAACCGACGA
*
32496604 TAAT
66 TAGT
* * * * * * *
32496608 TATGCCCAGAACTAGTCAGATAAACTGGCAAAAATTGCGCCAAGCGCTAGTTGGATAACCGACGA
1 TGTGCCCAGCACTAGTCAGATAAACTGACAGAAGTTGCGCCCAGCACTAGTTGGATAACCGACGA
*
32496673 TGGT
66 TAGT
32496677 TGTGCCCAGCACTAGTC
1 TGTGCCCAGCACTAGTC
32496694 GAATGAATCG
Statistics
Matches: 132, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 132 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.20
Consensus pattern (69 bp):
TGTGCCCAGCACTAGTCAGATAAACTGACAGAAGTTGCGCCCAGCACTAGTTGGATAACCGACGA
TAGT
Found at i:32496765 original size:20 final size:21
Alignment explanation
Indices: 32496731--32496777 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
32496721 GCAAATCCAT
32496731 AATATCA-TATACATAA-TTC
1 AATATCACTATACATAATTTC
*
32496750 AATATCACTTTACATAATTTC
1 AATATCACTATACATAATTTC
32496771 -ATATCAC
1 AATATCAC
32496778 ATTCACCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 7 0.28
20 15 0.60
21 3 0.12
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (21 bp):
AATATCACTATACATAATTTC
Found at i:32503021 original size:534 final size:534
Alignment explanation
Indices: 32502013--32503082 Score: 2140
Period size: 534 Copynumber: 2.0 Consensus size: 534
32502003 TGAGTTAAAG
32502013 TAGGAGAGTTCTCAAGTGGAAAAAGAAAATAAAAAGCAAGAAAATACCCATACAAAAGTGAAGAG
1 TAGGAGAGTTCTCAAGTGGAAAAAGAAAATAAAAAGCAAGAAAATACCCATACAAAAGTGAAGAG
32502078 TGATTCTGTTTTAACTAACTCTAACTTAAATTTGTTTAATGGTGTTTCTTTGTTACAAGATTTCA
66 TGATTCTGTTTTAACTAACTCTAACTTAAATTTGTTTAATGGTGTTTCTTTGTTACAAGATTTCA
32502143 AGGATCCATTGAGGGACTCTCAATTATATTTACTTTACCATCGATAGACGATTTTACTTGTGGGA
131 AGGATCCATTGAGGGACTCTCAATTATATTTACTTTACCATCGATAGACGATTTTACTTGTGGGA
32502208 AAGAGGTAAGTTGAACATTGATAATTCTCCACAGGTGCTAGAAGGTAAGAAAAGTAATGATACAT
196 AAGAGGTAAGTTGAACATTGATAATTCTCCACAGGTGCTAGAAGGTAAGAAAAGTAATGATACAT
32502273 CAAAAATTGAAATATGTAGGCGTACCTTGAATGTTTTTTTATAAGTATGCTACTGATTTTATTTG
261 CAAAAATTGAAATATGTAGGCGTACCTTGAATGTTTTTTTATAAGTATGCTACTGATTTTATTTG
32502338 TTCTTACGATATATTTTGTCACTGGTTAAGTTTCAATAAACAATGGTCTGAAAGTTCAATTGATT
326 TTCTTACGATATATTTTGTCACTGGTTAAGTTTCAATAAACAATGGTCTGAAAGTTCAATTGATT
32502403 TTATGTGTTTATCTAGGTATTTAAAGTTTACTTTTGTTGCATTCGATAGGTTTATTAAAAAAACC
391 TTATGTGTTTATCTAGGTATTTAAAGTTTACTTTTGTTGCATTCGATAGGTTTATTAAAAAAACC
32502468 TCATGCATTTGATATTGCAACAAAATCTTCTACCTTAGACTCTAAATATGAATTTTTACATAATA
456 TCATGCATTTGATATTGCAACAAAATCTTCTACCTTAGACTCTAAATATGAATTTTTACATAATA
32502533 ATATTAAACTAATT
521 ATATTAAACTAATT
32502547 TAGGAGAGTTCTCAAGTGGAAAAAGAAAATAAAAAGCAAGAAAATACCCATACAAAAGTGAAGAG
1 TAGGAGAGTTCTCAAGTGGAAAAAGAAAATAAAAAGCAAGAAAATACCCATACAAAAGTGAAGAG
32502612 TGATTCTGTTTTAACTAACTCTAACTTAAATTTGTTTAATGGTGTTTCTTTGTTACAAGATTTCA
66 TGATTCTGTTTTAACTAACTCTAACTTAAATTTGTTTAATGGTGTTTCTTTGTTACAAGATTTCA
32502677 AGGATCCATTGAGGGACTCTCAATTATATTTACTTTACCATCGATAGACGATTTTACTTGTGGGA
131 AGGATCCATTGAGGGACTCTCAATTATATTTACTTTACCATCGATAGACGATTTTACTTGTGGGA
32502742 AAGAGGTAAGTTGAACATTGATAATTCTCCACAGGTGCTAGAAGGTAAGAAAAGTAATGATACAT
196 AAGAGGTAAGTTGAACATTGATAATTCTCCACAGGTGCTAGAAGGTAAGAAAAGTAATGATACAT
32502807 CAAAAATTGAAATATGTAGGCGTACCTTGAATGTTTTTTTATAAGTATGCTACTGATTTTATTTG
261 CAAAAATTGAAATATGTAGGCGTACCTTGAATGTTTTTTTATAAGTATGCTACTGATTTTATTTG
32502872 TTCTTACGATATATTTTGTCACTGGTTAAGTTTCAATAAACAATGGTCTGAAAGTTCAATTGATT
326 TTCTTACGATATATTTTGTCACTGGTTAAGTTTCAATAAACAATGGTCTGAAAGTTCAATTGATT
32502937 TTATGTGTTTATCTAGGTATTTAAAGTTTACTTTTGTTGCATTCGATAGGTTTATTAAAAAAACC
391 TTATGTGTTTATCTAGGTATTTAAAGTTTACTTTTGTTGCATTCGATAGGTTTATTAAAAAAACC
32503002 TCATGCATTTGATATTGCAACAAAATCTTCTACCTTAGACTCTAAATATGAATTTTTACATAATA
456 TCATGCATTTGATATTGCAACAAAATCTTCTACCTTAGACTCTAAATATGAATTTTTACATAATA
32503067 ATATTAAACTAATT
521 ATATTAAACTAATT
32503081 TA
1 TA
32503083 TTTTTATAAT
Statistics
Matches: 536, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
534 536 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (534 bp):
TAGGAGAGTTCTCAAGTGGAAAAAGAAAATAAAAAGCAAGAAAATACCCATACAAAAGTGAAGAG
TGATTCTGTTTTAACTAACTCTAACTTAAATTTGTTTAATGGTGTTTCTTTGTTACAAGATTTCA
AGGATCCATTGAGGGACTCTCAATTATATTTACTTTACCATCGATAGACGATTTTACTTGTGGGA
AAGAGGTAAGTTGAACATTGATAATTCTCCACAGGTGCTAGAAGGTAAGAAAAGTAATGATACAT
CAAAAATTGAAATATGTAGGCGTACCTTGAATGTTTTTTTATAAGTATGCTACTGATTTTATTTG
TTCTTACGATATATTTTGTCACTGGTTAAGTTTCAATAAACAATGGTCTGAAAGTTCAATTGATT
TTATGTGTTTATCTAGGTATTTAAAGTTTACTTTTGTTGCATTCGATAGGTTTATTAAAAAAACC
TCATGCATTTGATATTGCAACAAAATCTTCTACCTTAGACTCTAAATATGAATTTTTACATAATA
ATATTAAACTAATT
Found at i:32511999 original size:19 final size:19
Alignment explanation
Indices: 32511975--32512012 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32511965 ATAATAGTAA
32511975 AACCAAAAATTAAGATGAT
1 AACCAAAAATTAAGATGAT
*
32511994 AACCAAAAATTAATATGAT
1 AACCAAAAATTAAGATGAT
32512013 TCCCATCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.58, C:0.11, G:0.08, T:0.24
Consensus pattern (19 bp):
AACCAAAAATTAAGATGAT
Found at i:32512264 original size:15 final size:16
Alignment explanation
Indices: 32512239--32512280 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
32512229 TAAACTAAAA
32512239 CAAAGGAGAAATGAA-G
1 CAAA-GAGAAATGAATG
*
32512255 CAAAGAGAAACGAATG
1 CAAAGAGAAATGAATG
32512271 CAAAGA-AAAT
1 CAAAGAGAAAT
32512281 TGATCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.60, C:0.10, G:0.24, T:0.07
Consensus pattern (16 bp):
CAAAGAGAAATGAATG
Found at i:32515858 original size:15 final size:16
Alignment explanation
Indices: 32515833--32515874 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
32515823 TAAACTAAAA
32515833 CAAAGGAGAAATGAA-G
1 CAAA-GAGAAATGAATG
*
32515849 CAAAGAGAAACGAATG
1 CAAAGAGAAATGAATG
32515865 CAAAGA-AAAT
1 CAAAGAGAAAT
32515875 TGATCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.60, C:0.10, G:0.24, T:0.07
Consensus pattern (16 bp):
CAAAGAGAAATGAATG
Found at i:32526197 original size:30 final size:31
Alignment explanation
Indices: 32526156--32526228 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
32526146 AAAAAATTAG
*
32526156 AAAATTAAAAAAAGTATTTTAAAA-ATATTTT
1 AAAAATAAAAAAAGTATTTTAAAATAT-TTTT
*
32526187 AAAAGTAAAAAAAGTATTTTAAAATATTTTT
1 AAAAATAAAAAAAGTATTTTAAAATATTTTT
32526218 AAAAATAAAAA
1 AAAAATAAAAA
32526229 GTATATATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (31 bp):
AAAAATAAAAAAAGTATTTTAAAATATTTTT
Found at i:32529817 original size:55 final size:56
Alignment explanation
Indices: 32529758--32529893 Score: 168
Period size: 55 Copynumber: 2.4 Consensus size: 56
32529748 TTATTATTAA
* * **
32529758 ATTTTAATA-AGATTATTATTAAATATACTTTAAT-AATAATAAATAATTTAATCCT
1 ATTTTAATATA-ATTATTATTAAATACAATTTAATAAATAATAAATAATTTAATAAT
* *
32529813 ATTTTAACATAATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAAT
1 ATTTTAATATAATTATTATTAAATACAATTTAAT-AAATAATAAATAATTTAATAAT
*
32529870 ATTCTTCATATAATTATTATTAAA
1 ATT-TTAATATAATTATTATTAAA
32529894 AATGAATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
55 29 0.42
56 1 0.01
57 21 0.30
58 18 0.26
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.46
Consensus pattern (56 bp):
ATTTTAATATAATTATTATTAAATACAATTTAATAAATAATAAATAATTTAATAAT
Found at i:32549381 original size:25 final size:25
Alignment explanation
Indices: 32549347--32549395 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32549337 TTTAATTAAT
*
32549347 ACAAGACTTTGGACTGTTCTAAGAC
1 ACAAGACTTTGGACTGTTCCAAGAC
*
32549372 ACAAGACTTTGGATTGTTCCAAGA
1 ACAAGACTTTGGACTGTTCCAAGA
32549396 TGGTCTCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (25 bp):
ACAAGACTTTGGACTGTTCCAAGAC
Found at i:32560446 original size:18 final size:18
Alignment explanation
Indices: 32560423--32560511 Score: 97
Period size: 18 Copynumber: 4.9 Consensus size: 18
32560413 CGTTTACGGT
* *
32560423 ACTATTCATGTATATAGC
1 ACTATTCACGTATACAGC
* *
32560441 ACTATTCATGTATACAGT
1 ACTATTCACGTATACAGC
* *
32560459 ACTATTCACATATACGGC
1 ACTATTCACGTATACAGC
* *
32560477 ACTATTCACGTATACGGT
1 ACTATTCACGTATACAGC
*
32560495 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
32560512 TAGTTGGGAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:32560479 original size:36 final size:36
Alignment explanation
Indices: 32560421--32560511 Score: 119
Period size: 36 Copynumber: 2.5 Consensus size: 36
32560411 ACCGTTTACG
* * *
32560421 GTACTATTCATGTATATAGCACTATTCATGTATACA
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
* * *
32560457 GTACTATTCACATATACGGCACTATTCACGTATACG
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
*
32560493 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
32560512 TAGTTGGGAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACGTATACA
Found at i:32576052 original size:18 final size:18
Alignment explanation
Indices: 32576029--32576069 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32576019 ATTACAAAAA
*
32576029 AAAATT-AAAATAATTTTT
1 AAAATTCAAAAT-ATTTAT
32576047 AAAATTCAAAATATTTAT
1 AAAATTCAAAATATTTAT
32576065 AAAAT
1 AAAAT
32576070 ATCCAAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAATTCAAAATATTTAT
Found at i:32576825 original size:20 final size:20
Alignment explanation
Indices: 32576800--32576843 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32576790 AAAAAATCTA
32576800 AAAAATAAATATAAAT-TATT
1 AAAAATAAAT-TAAATATATT
*
32576820 AAAAATATATTAAATATATT
1 AAAAATAAATTAAATATATT
32576840 AAAA
1 AAAA
32576844 TTTATGTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATAAATTAAATATATT
Found at i:32578207 original size:30 final size:30
Alignment explanation
Indices: 32578171--32578227 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32578161 TTTTACATAT
32578171 ATATTTTGAATTTTTATAAAAT-TTTTATTC
1 ATATTTTGAATTTTTA-AAAATATTTTATTC
*
32578201 ATATTTTTAATTTTTAAAAATATTTTA
1 ATATTTTGAATTTTTAAAAATATTTTA
32578228 ACGTGAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (30 bp):
ATATTTTGAATTTTTAAAAATATTTTATTC
Found at i:32578249 original size:9 final size:9
Alignment explanation
Indices: 32578235--32578285 Score: 50
Period size: 10 Copynumber: 5.4 Consensus size: 9
32578225 TTAACGTGAA
32578235 TTTTAATAT
1 TTTTAATAT
32578244 TTTTAATAAT
1 TTTTAAT-AT
* *
32578254 TTATATTTAT
1 TTTTA-ATAT
32578264 TTTTAATAT
1 TTTTAATAT
32578273 ATTTTAA-AT
1 -TTTTAATAT
32578282 TTTT
1 TTTT
32578286 TTAAAAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
8 4 0.11
9 12 0.34
10 18 0.51
11 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTAATAT
Found at i:32578283 original size:22 final size:20
Alignment explanation
Indices: 32578241--32578287 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
32578231 TGAATTTTAA
*
32578241 TATTTTTAATAATTTATATT
1 TATTTTTAATAATTTAAATT
32578261 TATTTTTAATATATTTTAAATT
1 TATTTTTAATA-A-TTTAAATT
32578283 T-TTTT
1 TATTTT
32578288 AAAAATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 11 0.46
21 5 0.21
22 8 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TATTTTTAATAATTTAAATT
Found at i:32578286 original size:20 final size:19
Alignment explanation
Indices: 32578233--32578294 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
32578223 TTTTAACGTG
*
32578233 AATTTT-AATATTTTTAAT
1 AATTTTAAATTTTTTTAAT
*
32578251 AA-TTTATATTTATTTTTAAT
1 AATTTTA-AATT-TTTTTAAT
*
32578271 ATATTTTAAATTTTTTTAAA
1 A-ATTTTAAATTTTTTTAAT
32578291 AATT
1 AATT
32578295 ATTGTTAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
17 3 0.09
18 2 0.06
19 5 0.14
20 17 0.49
21 4 0.11
22 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
AATTTTAAATTTTTTTAAT
Found at i:32588970 original size:21 final size:21
Alignment explanation
Indices: 32588946--32589007 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
32588936 ATTAGGTGGA
* *
32588946 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTAT
32588967 TCAGCTCTTACGAGCTTCTAT
1 TCAGCTCTTACGAGCTTCTAT
*
32588988 TCAACT-TT-CGAGCTTCTAT
1 TCAGCTCTTACGAGCTTCTAT
32589007 T
1 T
32589008 GGCGTGTTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 12 0.32
20 2 0.05
21 24 0.63
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTAT
Found at i:32596630 original size:21 final size:21
Alignment explanation
Indices: 32596604--32596663 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
32596594 TAGGTGGATT
32596604 AGCTCTTACGAGCTTCTGTTA
1 AGCTCTTACGAGCTTCTGTTA
* * *
32596625 AGCTCTTAGGAGCTTCTATTC
1 AGCTCTTACGAGCTTCTGTTA
*
32596646 A--TCTTTCGAGCTTCTGTT
1 AGCTCTTACGAGCTTCTGTT
32596664 GGCGTGTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
19 14 0.42
21 19 0.58
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (21 bp):
AGCTCTTACGAGCTTCTGTTA
Found at i:32602369 original size:13 final size:11
Alignment explanation
Indices: 32602337--32602379 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
32602327 CTATTTTTTA
*
32602337 AATAAAATAAT
1 AATAAAATATT
32602348 AAT-AAATATCT
1 AATAAAATAT-T
32602359 AAGTAAAATATT
1 AA-TAAAATATT
32602371 AATAAAATA
1 AATAAAATA
32602380 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:32604227 original size:26 final size:26
Alignment explanation
Indices: 32604173--32604231 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
32604163 TATTTTCTCG
* * *
32604173 AAATTTTACTAGGGACAAAGTCGTTA
1 AAATTTTACTAGGGACAAAATCATCA
**
32604199 AAATTTTACTAGGGGTAAAATCATCA
1 AAATTTTACTAGGGACAAAATCATCA
32604225 AAATTTT
1 AAATTTT
32604232 GTTGGGGCTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (26 bp):
AAATTTTACTAGGGACAAAATCATCA
Found at i:32604498 original size:73 final size:73
Alignment explanation
Indices: 32604379--32604524 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
32604369 GGACCTGATG
32604379 TGAGCTAGGCCCAAAACCCTTCATGTAAAATGAAGGGGTGACAACCCTAGTAGGAATACTAGAGT
1 TGAGCTAGGCCCAAAACCCTTCATGTAAAATGAAGGGGTGACAACCCTAGTAGGAATACTAGAGT
32604444 GTGTCGTC
66 GTGTCGTC
32604452 TGAGCTAGGCCCAAAACCCTTCATGTAAAATGAAGGGGTGACAACCCTAGTAGGAATACTAGAGT
1 TGAGCTAGGCCCAAAACCCTTCATGTAAAATGAAGGGGTGACAACCCTAGTAGGAATACTAGAGT
32604517 GTGTCGTC
66 GTGTCGTC
32604525 CACCTCTCTC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (73 bp):
TGAGCTAGGCCCAAAACCCTTCATGTAAAATGAAGGGGTGACAACCCTAGTAGGAATACTAGAGT
GTGTCGTC
Found at i:32606204 original size:30 final size:30
Alignment explanation
Indices: 32606097--32606205 Score: 114
Period size: 30 Copynumber: 3.6 Consensus size: 30
32606087 GTTTTGTTAT
* * **
32606097 TTATATATATAATATATATGGGTTTTGGTG
1 TTATATGTATAATATATTTGGGTCATGGTG
* **
32606127 TTATA--TATAATATATGTACGTGCATGGGTG
1 TTATATGTATAATATATTTGGGT-CAT-GGTG
*
32606157 TTATATGAATAATATATTTGGGTCATGGTG
1 TTATATGTATAATATATTTGGGTCATGGTG
32606187 TTATATGTATAATATATTT
1 TTATATGTATAATATATTT
32606206 ACCTGGGTCA
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 13 0.20
29 1 0.02
30 36 0.55
31 3 0.05
32 12 0.18
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (30 bp):
TTATATGTATAATATATTTGGGTCATGGTG
Found at i:32618812 original size:21 final size:22
Alignment explanation
Indices: 32618779--32618822 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
32618769 ACCAAAATGC
*
32618779 AACAATTGGTATCTTA-ATTCA
1 AACAATTGGTATCTAACATTCA
* *
32618800 AACATTTGTTATCTAACATTCA
1 AACAATTGGTATCTAACATTCA
32618822 A
1 A
32618823 CACCATTCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (22 bp):
AACAATTGGTATCTAACATTCA
Found at i:32618824 original size:21 final size:20
Alignment explanation
Indices: 32618773--32618824 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
32618763 TGTCTAACCA
*
32618773 AAATGCAACAATTGGTATCT
1 AAATTCAACAATTGGTATCT
* * *
32618793 TAATTCAAACATTTGTTATCT
1 AAATTC-AACAATTGGTATCT
32618814 AACATTCAACA
1 AA-ATTCAACA
32618825 CCATTCACAC
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 4 0.16
21 17 0.68
22 4 0.16
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (20 bp):
AAATTCAACAATTGGTATCT
Found at i:32630342 original size:5 final size:5
Alignment explanation
Indices: 32630332--32630400 Score: 138
Period size: 5 Copynumber: 13.8 Consensus size: 5
32630322 CCAAAAACAC
32630332 GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA
1 GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA
32630382 GTATA GTATA GTATA GTAT
1 GTATA GTATA GTATA GTAT
32630401 TTTGAAGCAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 64 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (5 bp):
GTATA
Found at i:32635328 original size:19 final size:19
Alignment explanation
Indices: 32635304--32635340 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
32635294 AAGTTAATAA
32635304 CAAATTTGATTACGGTGGG
1 CAAATTTGATTACGGTGGG
32635323 CAAATTTGATTACGGTGG
1 CAAATTTGATTACGGTGG
32635341 ATGACAGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (19 bp):
CAAATTTGATTACGGTGGG
Found at i:32641994 original size:68 final size:67
Alignment explanation
Indices: 32641886--32642018 Score: 230
Period size: 68 Copynumber: 2.0 Consensus size: 67
32641876 TGTTGAGCGC
32641886 ACATAAAAAATCTAACACTCATCATCATTATCAAATTATTGTGAAATGCAAATGTAAGTTATGGC
1 ACATAAAAAATCTAACACTCATCATCATTATCAAATTATTGTGAAATGCAAATGTAAGTTATGGC
32641951 GG
66 GG
* * *
32641953 ACATAAAAAAATCTAACACTCGTCATCATTATCAAATTATTGTGAAATGTAAATGTGAGTTATGG
1 ACAT-AAAAAATCTAACACTCATCATCATTATCAAATTATTGTGAAATGCAAATGTAAGTTATGG
32642018 C
65 C
32642019 AGTTGTATAT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
67 4 0.06
68 58 0.94
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (67 bp):
ACATAAAAAATCTAACACTCATCATCATTATCAAATTATTGTGAAATGCAAATGTAAGTTATGGC
GG
Found at i:32644021 original size:23 final size:23
Alignment explanation
Indices: 32643995--32644038 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
32643985 TATTTAATCT
*
32643995 CTACTGAATAGTTATACATATTC
1 CTACTCAATAGTTATACATATTC
32644018 CTACTCAATAGTTATACATAT
1 CTACTCAATAGTTATACATAT
32644039 ATAGGAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (23 bp):
CTACTCAATAGTTATACATATTC
Found at i:32644954 original size:25 final size:25
Alignment explanation
Indices: 32644916--32644965 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
32644906 GCTAGGCTAC
*
32644916 CACTTATCATTTTGTCACTTGATCA
1 CACTTATCACTTTGTCACTTGATCA
32644941 CACTTATCACTTTGTCACTTGATCA
1 CACTTATCACTTTGTCACTTGATCA
32644966 GAAGTACTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.08, T:0.42
Consensus pattern (25 bp):
CACTTATCACTTTGTCACTTGATCA
Found at i:32645625 original size:32 final size:29
Alignment explanation
Indices: 32645557--32645647 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 29
32645547 TCATTCATAT
* *
32645557 ATTTTTCAATTTTCCTCCTCCTCCTNT--
1 ATTTTCCAATTTTCCTCCTCCTCCTCTCC
32645584 ATTTTCCAATTTTCCTCCTCCTCCTCTCC
1 ATTTTCCAATTTTCCTCCTCCTCCTCTCC
32645613 NATATTTCCCAATTTTCCTCCTCCTCCTCTCC
1 -AT-TTT-CCAATTTTCCTCCTCCTCCTCTCC
32645645 ATT
1 ATT
32645648 CCACATCCTT
Statistics
Matches: 57, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
27 25 0.44
30 3 0.05
31 5 0.09
32 24 0.42
ACGTcount: A:0.12, C:0.40, G:0.00, T:0.46
Consensus pattern (29 bp):
ATTTTCCAATTTTCCTCCTCCTCCTCTCC
Found at i:32651339 original size:50 final size:50
Alignment explanation
Indices: 32651264--32651582 Score: 372
Period size: 50 Copynumber: 6.4 Consensus size: 50
32651254 GTTGGTGAAT
*
32651264 TGGGACATAGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
* * *
32651314 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCATGTAAGATCATATC
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
* **
32651364 TGGGACATGGCGTTGGCACTGAGATGAGAGGTCCCCCGTAAGACCATGTC
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
* * **
32651414 TGGGACATGGC-ATGAGCACCGATATGAGAACATCCCATGTAAGA-CATGTC
1 TGGGACATGGCGTTG-GCACCGAGATGAG-AGGTCCCATGTAAGACCATGTC
* * ** *
32651464 TGGGACATGGTGTTGGCACCGAGATTAGAGGTCCCCCGTAAAACCATGTC
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
* * * * ** *
32651514 TGGGACATGGCATGGGCACTGATATGAGAACATCCTATGTAAGACCATGTC
1 TGGGACATGGCGTTGGCACCGAGATGAG-AGGTCCCATGTAAGACCATGTC
* *
32651565 TGGGACATTGCTTTGGCA
1 TGGGACATGGCGTTGGCA
32651583 TGTTATGATC
Statistics
Matches: 223, Mismatches: 41, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
49 12 0.05
50 167 0.75
51 44 0.20
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
Found at i:32651441 original size:100 final size:98
Alignment explanation
Indices: 32651264--32651582 Score: 424
Period size: 100 Copynumber: 3.2 Consensus size: 98
32651254 GTTGGTGAAT
* ** *
32651264 TGGGACATAGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTG
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGC-ATG
* ** *
32651329 GCACCGAGATGAG-AGGTCTCATGTAAGATCATATC
65 GCACCGATATGAGAACATC-CATGTAAGA-CATGTC
*
32651364 TGGGACATGGCGTTGGCACTGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGA
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATG-
32651429 GCACCGATATGAGAACATCCCATGTAAGACATGTC
65 GCACCGATATGAGAACAT-CCATGTAAGACATGTC
* * *
32651464 TGGGACATGGTGTTGGCACCGAGATTAGAGGTCCCCCGTAAAACCATGTCTGGGACATGGCATGG
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCAT-G
*
32651529 GCACTGATATGAGAACATCCTATGTAAGACCATGTC
65 GCACCGATATGAGAACATCC-ATGTAAGA-CATGTC
* *
32651565 TGGGACATTGCTTTGGCA
1 TGGGACATGGCGTTGGCA
32651583 TGTTATGATC
Statistics
Matches: 196, Mismatches: 17, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
99 4 0.02
100 158 0.81
101 33 0.17
102 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (98 bp):
TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGG
CACCGATATGAGAACATCCATGTAAGACATGTC
Found at i:32656321 original size:24 final size:24
Alignment explanation
Indices: 32656255--32656322 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
32656245 TGGAGGATCA
32656255 ATAATACTTCCATTGAAAATATCC
1 ATAATACTTCCATTGAAAATATCC
*
32656279 ---ATA-TT--ATTGAGAAA-CTCC
1 ATAATACTTCCATTGA-AAATATCC
32656297 ATAATACTTCCATTGAAAATATCC
1 ATAATACTTCCATTGAAAATATCC
32656321 AT
1 AT
32656323 GTTATTATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
18 8 0.24
19 3 0.09
20 2 0.06
21 6 0.18
22 2 0.06
23 3 0.09
24 10 0.29
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (24 bp):
ATAATACTTCCATTGAAAATATCC
Found at i:32662779 original size:51 final size:51
Alignment explanation
Indices: 32662720--32662822 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
32662710 CCCAAGACTT
32662720 AGTCAATTATCTCACAATGCAAGTAACAT-AAACTTCTTTAGACCTAGTCAA
1 AGTCAATTATCTCACAATGCAAGTAACATAAAAC-TCTTTAGACCTAGTCAA
*
32662771 AGTCAATTATCTCGCAATGCAAGTAACATAAAACTCTTTAGACCTAGTCAA
1 AGTCAATTATCTCACAATGCAAGTAACATAAAACTCTTTAGACCTAGTCAA
32662822 A
1 A
32662823 CTCTTATTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 46 0.92
52 4 0.08
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (51 bp):
AGTCAATTATCTCACAATGCAAGTAACATAAAACTCTTTAGACCTAGTCAA
Found at i:32664689 original size:14 final size:14
Alignment explanation
Indices: 32664670--32664704 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32664660 AATATAACAT
*
32664670 AATATAACAATATA
1 AATATAACAAGATA
32664684 AATATAACAAGATA
1 AATATAACAAGATA
*
32664698 CATATAA
1 AATATAA
32664705 ATCTAATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.09, G:0.03, T:0.26
Consensus pattern (14 bp):
AATATAACAAGATA
Found at i:32666854 original size:25 final size:24
Alignment explanation
Indices: 32666826--32666929 Score: 70
Period size: 25 Copynumber: 4.2 Consensus size: 24
32666816 CTCGCTTGAA
*
32666826 CTTCCCGATATATGGCTATCCAGAG
1 CTTCCCGATATATGGCT-TACAGAG
* *
32666851 CTTCCTGATAAATGGCTCTACAGAG
1 CTTCCCGATATATGGCT-TACAGAG
* * *
32666876 CTACCCGTTAT-TGGCTTGCATGAG
1 CTTCCCGATATATGGCTTACA-GAG
* *
32666900 CTTCCTGA-ATATGACTCTA-ATGAG
1 CTTCCCGATATATGGCT-TACA-GAG
32666924 CTTCCC
1 CTTCCC
32666930 CTTATACAGC
Statistics
Matches: 61, Mismatches: 15, Indels: 7
0.73 0.18 0.08
Matches are distributed among these distances:
23 5 0.08
24 27 0.44
25 29 0.48
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (24 bp):
CTTCCCGATATATGGCTTACAGAG
Found at i:32669014 original size:25 final size:25
Alignment explanation
Indices: 32668979--32669074 Score: 86
Period size: 25 Copynumber: 3.7 Consensus size: 25
32668969 AATTCATATT
*
32668979 CGGGAATGCTCATATGAGCACAT-AAA
1 CGGGAA-GCTCATCTGAGC-CATAAAA
* *
32669005 CGAGAAGCTCTCTCTCGAGCCATAAAA
1 CGGGAAGCTC-ATCT-GAGCCATAAAA
* **
32669032 CGGGAAGCTCATGTGAGCCATGTAA
1 CGGGAAGCTCATCTGAGCCATAAAA
*
32669057 CGGGAAGCTTATCTGAGC
1 CGGGAAGCTCATCTGAGC
32669075 ATGACAGGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
25 29 0.51
26 12 0.21
27 16 0.28
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (25 bp):
CGGGAAGCTCATCTGAGCCATAAAA
Found at i:32669131 original size:24 final size:24
Alignment explanation
Indices: 32669034--32669146 Score: 72
Period size: 24 Copynumber: 4.8 Consensus size: 24
32669024 CCATAAAACG
* * *
32669034 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCATGAGAGCCA-ATAACA
* ** *
32669059 GGAAGCTTATCTGAG-C-ATGACA
1 GGAAGCTCATGAGAGCCAATAACA
* * **
32669081 GGAAGCTCATAAGAG-CTATATTTA
1 GGAAGCTCATGAGAGCCAATA-ACA
32669105 GGAAGCTCATGAGAGCCAATAACA
1 GGAAGCTCATGAGAGCCAATAACA
32669129 GGAAGCTC-TGAAGAGCCA
1 GGAAGCTCATG-AGAGCCA
32669147 TTTATCGTGA
Statistics
Matches: 69, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
22 16 0.23
23 4 0.06
24 32 0.46
25 17 0.25
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (24 bp):
GGAAGCTCATGAGAGCCAATAACA
Found at i:32669255 original size:25 final size:26
Alignment explanation
Indices: 32669191--32669272 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 26
32669181 AAGTTCAAGC
**
32669191 GAGCCATT--TTGGGAAGCTC-CGGA
1 GAGCCATTAATTGGGAAGCTCACAAA
*
32669214 GAGCCATTAATTAGGAAGCTCACAAA
1 GAGCCATTAATTGGGAAGCTCACAAA
*
32669240 GAGCCTTTAA-TGGGAAAGCTCACGAAA
1 GAGCCATTAATTGGG-AAGCTCAC-AAA
32669267 -AGCCAT
1 GAGCCAT
32669273 ATATTGGAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 8 0.17
25 13 0.27
26 24 0.50
27 3 0.06
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (26 bp):
GAGCCATTAATTGGGAAGCTCACAAA
Found at i:32678102 original size:19 final size:17
Alignment explanation
Indices: 32678063--32678106 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
32678053 TTCAACCTTT
*
32678063 TTGTATATTATTATGTA
1 TTGTATATTATTATATA
32678080 -TGTATATTATTTGATATA
1 TTGTATATTA-TT-ATATA
32678098 TTGTATATT
1 TTGTATATT
32678107 TTCCTTATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 9 0.39
17 2 0.09
18 4 0.17
19 8 0.35
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (17 bp):
TTGTATATTATTATATA
Found at i:32681175 original size:25 final size:26
Alignment explanation
Indices: 32681138--32681186 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
32681128 AAAACTAAAG
32681138 AAAAATATAAAAAAATTAAATTTATT
1 AAAAATATAAAAAAATTAAATTTATT
*
32681164 AAAAATAT-AAAAAATTAGATTTA
1 AAAAATATAAAAAAATTAAATTTA
32681187 AAGTTGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
AAAAATATAAAAAAATTAAATTTATT
Found at i:32681313 original size:25 final size:26
Alignment explanation
Indices: 32681284--32681341 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
32681274 AAAATATAGG
32681284 GAAAATAGAAAAATTTA-TAAAAATAT
1 GAAAATAGAAAAATTTATTAAAAAT-T
**
32681310 -AAAATATCAAAATTTATTAAAAATT
1 GAAAATAGAAAAATTTATTAAAAATT
32681335 GAAAATA
1 GAAAATA
32681342 AATAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (26 bp):
GAAAATAGAAAAATTTATTAAAAATT
Found at i:32682033 original size:14 final size:14
Alignment explanation
Indices: 32682016--32682067 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
32682006 TTTTGAGCAA
32682016 TTTATTTTTTTTCT
1 TTTATTTTTTTTCT
*
32682030 TTTATGTTTTTTAACT
1 TTTAT-TTTTTT-TCT
32682046 TTCT-TTTTTTTTC-
1 TT-TATTTTTTTTCT
32682059 TTTATTTTT
1 TTTATTTTT
32682068 CATTCTCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
12 1 0.03
13 7 0.22
14 6 0.19
15 12 0.38
16 5 0.16
17 1 0.03
ACGTcount: A:0.10, C:0.08, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTATTTTTTTTCT
Found at i:32683193 original size:25 final size:26
Alignment explanation
Indices: 32683150--32683198 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
32683140 TATAAAAAAG
32683150 TTTAATAATATTTATTTTTATATATT
1 TTTAATAATATTTATTTTTATATATT
*
32683176 TTTAATAAT-TTTATTTTTTTATA
1 TTTAATAATATTTATTTTTATATA
32683199 AATTTTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTAATAATATTTATTTTTATATATT
Found at i:32683196 original size:17 final size:18
Alignment explanation
Indices: 32683173--32683234 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
32683163 ATTTTTATAT
32683173 ATTTTTAATAATTTTAT-
1 ATTTTTAATAATTTTATC
*
32683190 -TTTTTTATAAATTTTATC
1 ATTTTTAAT-AATTTTATC
* *
32683208 ATTTTTACTAATTATAATC
1 ATTTTTAATAATT-TTATC
32683227 ATATTTTA
1 AT-TTTTA
32683235 TCTTTTTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 7 0.19
17 8 0.22
18 4 0.11
19 12 0.33
20 5 0.14
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTAATAATTTTATC
Found at i:32683204 original size:26 final size:26
Alignment explanation
Indices: 32683150--32683205 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
32683140 TATAAAAAAG
*
32683150 TTTAATAATATTTATTTTTATATATT
1 TTTAATAATATTTATTTTTATATAAT
*
32683176 TTTAATAAT-TTTATTTTTTTATAAAT
1 TTTAATAATATTTATTTTTATAT-AAT
32683202 TTTA
1 TTTA
32683206 TCATTTTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 12 0.44
26 15 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTAATAATATTTATTTTTATATAAT
Found at i:32683386 original size:25 final size:26
Alignment explanation
Indices: 32683321--32683392 Score: 85
Period size: 25 Copynumber: 2.7 Consensus size: 26
32683311 ATTTTTTCTA
*
32683321 TATT-TTTTAATGAATTATCTATATTTT
1 TATTATTTTAAT-AATT-TTTATATTTT
*
32683348 TATATATTATAATAATTTTTATA-TTT
1 TAT-TATTTTAATAATTTTTATATTTT
32683374 TATTATTTTAATAATTTTT
1 TATTATTTTAATAATTTTT
32683393 TCTAACCATC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 15 0.38
26 6 0.15
27 8 0.20
28 5 0.12
29 6 0.15
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (26 bp):
TATTATTTTAATAATTTTTATATTTT
Found at i:32687066 original size:17 final size:17
Alignment explanation
Indices: 32687044--32687076 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32687034 AAATGACATA
*
32687044 GTTTTGTCTTTTAACTG
1 GTTTTGACTTTTAACTG
32687061 GTTTTGACTTTTAACT
1 GTTTTGACTTTTAACT
32687077 TTAGAAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
GTTTTGACTTTTAACTG
Found at i:32692636 original size:16 final size:18
Alignment explanation
Indices: 32692609--32692641 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32692599 TAAAATTGGG
32692609 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
32692626 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
32692642 GTTAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:32695202 original size:38 final size:38
Alignment explanation
Indices: 32695151--32695226 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
32695141 CCTCATTGAG
32695151 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
1 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
32695189 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
1 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
32695227 TTTTTTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.03, G:0.26, T:0.47
Consensus pattern (38 bp):
ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
Found at i:32698126 original size:31 final size:31
Alignment explanation
Indices: 32698091--32698233 Score: 110
Period size: 31 Copynumber: 4.6 Consensus size: 31
32698081 CAACAATATA
* * *
32698091 TATATTCATATACGAACCAAATTTGACAATG
1 TATAATCATATACGAATCAAATTTGGCAATG
* *
32698122 TAT-ATCTATATACAAATC-AATTCGGCAATG
1 TATAATC-ATATACGAATCAAATTTGGCAATG
* * *
32698152 TATAACCATATATGAATCAAGTTTGGCAATG
1 TATAATCATATACGAATCAAATTTGGCAATG
* ** * *** *
32698183 TATAATCATAGATAAATTAAATTCAACAGTG
1 TATAATCATATACGAATCAAATTTGGCAATG
*
32698214 TATAACCATATACGAATCAA
1 TATAATCATATACGAATCAA
32698234 TTCGACAACT
Statistics
Matches: 85, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
30 24 0.28
31 61 0.72
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.31
Consensus pattern (31 bp):
TATAATCATATACGAATCAAATTTGGCAATG
Found at i:32698182 original size:61 final size:60
Alignment explanation
Indices: 32698075--32698467 Score: 280
Period size: 61 Copynumber: 6.4 Consensus size: 60
32698065 AATGCTCAAA
* * * *
32698075 TCAATTCAACAATATATATATTCATATACGAACCAAATTTGACAATGTATATCTATATACAAA
1 TCAATTCAACAATGTATA-A-CCATATACGAATC-AATTTGACAATGTATATCTATATACAAT
** * * *
32698138 TCAATTCGGCAATGTATAACCATATATGAATCAAGTTTGGCAATGTATAATCATAGATA-AAT
1 TCAATTCAACAATGTATAACCATATACGAATCAA-TTTGACAATGTAT-ATC-TATATACAAT
* * * *
32698200 TAAATTCAACAGTGTATAACCATATACGAATCAATTCGACAACT-TATATCCATATACAAT
1 TCAATTCAACAATGTATAACCATATACGAATCAATTTGACAA-TGTATATCTATATACAAT
* * * * * *
32698260 TCAATTTCAACAATGTATAACCATGTACAAATTAATATCAGCAATATGTA-ATC-ATATACAAA
1 TCAA-TTCAACAATGTATAACCATATACGAATCAATTTGA-C-A-ATGTATATCTATATACAAT
* * * * *
32698322 TCAATTCAACAACT-TATATCCATATAC-AATTCAATTTCAACAATGTATAACCATGTACAAAT
1 TCAATTCAACAA-TGTATAACCATATACGAA-TCAATTT-GACAATGTATATCTATATAC-AAT
* * * * * * *
32698384 T-AATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT-TATATCCATATACAAT
1 TCAA-TTCAACAATGTATAACCATATACGAATCAATTTGACAA-TGTATATCTATATACAAT
*
32698444 TCAATTTCAACAACGTATAACCAT
1 TCAA-TTCAACAATGTATAACCAT
32698468 GCACAAATTA
Statistics
Matches: 262, Mismatches: 47, Indels: 44
0.74 0.13 0.12
Matches are distributed among these distances:
59 9 0.03
60 20 0.08
61 124 0.47
62 79 0.30
63 27 0.10
64 3 0.01
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.32
Consensus pattern (60 bp):
TCAATTCAACAATGTATAACCATATACGAATCAATTTGACAATGTATATCTATATACAAT
Found at i:32698320 original size:31 final size:31
Alignment explanation
Indices: 32698178--32698506 Score: 214
Period size: 31 Copynumber: 10.7 Consensus size: 31
32698168 TCAAGTTTGG
* * * *
32698178 CAATGTATAATCATAGATAAATTAAATTCAA
1 CAATATATAATCATATACAAATTAATTTCAA
* * * * * *
32698209 CAGTGTATAACCATATACGAATCAA-TTCGA
1 CAATATATAATCATATACAAATTAATTTCAA
32698239 CAACT-TAT-ATCCATATAC-AATTCAATTTCAA
1 CAA-TATATAAT-CATATACAAATT-AATTTCAA
* * * * *
32698270 CAATGTATAACCATGTACAAATTAATATCAG
1 CAATATATAATCATATACAAATTAATTTCAA
* *
32698301 CAATATGTAATCATATACAAATCAA-TTCAA
1 CAATATATAATCATATACAAATTAATTTCAA
32698331 CAACT-TAT-ATCCATATAC-AATTCAATTTCAA
1 CAA-TATATAAT-CATATACAAATT-AATTTCAA
* * * *
32698362 CAATGTATAACCATGTACAAATTAATTTCAG
1 CAATATATAATCATATACAAATTAATTTCAA
* **
32698393 CAATATATAATCATATACAAATCAA-TTCGG
1 CAATATATAATCATATACAAATTAATTTCAA
32698423 CAACT-TAT-ATCCATATAC-AATTCAATTTCAA
1 CAA-TATATAAT-CATATACAAATT-AATTTCAA
** * ** *
32698454 CAACGTATAACCATGCACAAATTAATTTCAG
1 CAATATATAATCATATACAAATTAATTTCAA
*
32698485 CAATATACAATCATATACAAAT
1 CAATATATAATCATATACAAAT
32698507 CAAGTCGGCA
Statistics
Matches: 231, Mismatches: 46, Indels: 42
0.72 0.14 0.13
Matches are distributed among these distances:
29 14 0.06
30 56 0.24
31 146 0.63
32 15 0.06
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (31 bp):
CAATATATAATCATATACAAATTAATTTCAA
Found at i:32698474 original size:61 final size:61
Alignment explanation
Indices: 32698116--32698509 Score: 261
Period size: 61 Copynumber: 6.4 Consensus size: 61
32698106 ACCAAATTTG
* * * ** ** **
32698116 ACAATGTATATCTATATACAAATCAA-TTCGGCAATGTATAACCATATATGAATCAAGTTTG
1 ACAATATATATCCATATACAATTCAATTTCAACAATGTATAACCATATACAAATCAA-TTCA
* * * * * *
32698177 GCAATGTATAAT-CATAGATA-AATT-AAATTCAACAGTGTATAACCATATACGAATCAATTCG
1 ACAATATAT-ATCCAT--ATACAATTCAATTTCAACAATGTATAACCATATACAAATCAATTCA
* *
32698238 ACAACT-TATATCCATATACAATTCAATTTCAACAATGTATAACCATGTACAAATTAATATCA
1 ACAA-TATATATCCATATACAATTCAATTTCAACAATGTATAACCATATACAAATCAAT-TCA
* * * * *
32698300 GCAATATGTAAT-CATATACAAATCAA-TTCAACAACT-TATATCCATATACAATTCAATTTCA
1 ACAATATAT-ATCCATATACAATTCAATTTCAACAA-TGTATAACCATATACAAATCAA-TTCA
* * * * * * *
32698361 ACAATGTATAACCATGTACAAATT-AATTTCAGCAATATATAATCATATACAAATCAATTCG
1 ACAATATATATCCATATAC-AATTCAATTTCAACAATGTATAACCATATACAAATCAATTCA
* * ** *
32698422 GCAACT-TATATCCATATACAATTCAATTTCAACAACGTATAACCATGCACAAATTAATTTCA
1 ACAA-TATATATCCATATACAATTCAATTTCAACAATGTATAACCATATACAAATCAA-TTCA
* * *
32698484 GCAATATACAAT-CATATACAAATCAA
1 ACAATATA-TATCCATATACAATTCAA
32698510 GTCGGCAACT
Statistics
Matches: 265, Mismatches: 46, Indels: 43
0.75 0.13 0.12
Matches are distributed among these distances:
59 3 0.01
60 11 0.04
61 140 0.53
62 104 0.39
63 7 0.03
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (61 bp):
ACAATATATATCCATATACAATTCAATTTCAACAATGTATAACCATATACAAATCAATTCA
Found at i:32698583 original size:92 final size:92
Alignment explanation
Indices: 32698129--32698556 Score: 549
Period size: 92 Copynumber: 4.7 Consensus size: 92
32698119 ATGTATATCT
* * * ** *
32698129 ATATACAAATCAATTCGGCAA-TGTATAACCATATATGAA-TCAAGTTT-GGCAATGTATAATCA
1 ATATACAAATCAATTCGACAACT-TATATCCATATA-CAATTCAA-TTTCAACAATGTATAACCA
* * * * * *
32698191 TAG-ATAAATTAAATTCAACAGTGTATAACC
63 T-GTACAAATTAATTTCAGCAATATATAATC
*
32698221 ATATACGAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
* *
32698286 ACAAATTAATATCAGCAATATGTAATC
66 ACAAATTAATTTCAGCAATATATAATC
*
32698313 ATATACAAATCAATTCAACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
32698378 ACAAATTAATTTCAGCAATATATAATC
66 ACAAATTAATTTCAGCAATATATAATC
* * *
32698405 ATATACAAATCAATTCGGCAACTTATATCCATATACAATTCAATTTCAACAACGTATAACCATGC
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
*
32698470 ACAAATTAATTTCAGCAATATACAATC
66 ACAAATTAATTTCAGCAATATATAATC
* * * * * **
32698497 ATATACAAATCAAGTCGGCAACTTATATCCATTTGCAAATCAATTTTGACAATGTATAAC
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAAC
32698557 TATAAAAAAT
Statistics
Matches: 301, Mismatches: 31, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
91 6 0.02
92 294 0.98
93 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.31
Consensus pattern (92 bp):
ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
ACAAATTAATTTCAGCAATATATAATC
Found at i:32698585 original size:25 final size:25
Alignment explanation
Indices: 32698557--32698610 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
32698547 AATGTATAAC
*
32698557 TATAAAA-AATTCGAATTCGGCAATA
1 TATAAAACAA-TCAAATTCGGCAATA
*
32698582 TATAAAACAATCAAATTCGGCAATG
1 TATAAAACAATCAAATTCGGCAATA
32698607 TATA
1 TATA
32698611 TCTATAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (25 bp):
TATAAAACAATCAAATTCGGCAATA
Found at i:32703942 original size:34 final size:33
Alignment explanation
Indices: 32703886--32703972 Score: 102
Period size: 34 Copynumber: 2.6 Consensus size: 33
32703876 TTTTCATATA
* * * *
32703886 AAAATGTCACATTACCAAAAACATATATCCGATC
1 AAAATGTCA-ATTTCTAGAAACATATATCAGATC
32703920 AAAATGTCATATTTCTAGAAACATATATCAGATC
1 AAAATGTCA-ATTTCTAGAAACATATATCAGATC
* *
32703954 AAAATATCAATTTTTAGAA
1 AAAATGTCAATTTCTAGAA
32703973 GTACATATCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 9 0.20
34 37 0.80
ACGTcount: A:0.47, C:0.16, G:0.07, T:0.30
Consensus pattern (33 bp):
AAAATGTCAATTTCTAGAAACATATATCAGATC
Found at i:32703981 original size:33 final size:34
Alignment explanation
Indices: 32703904--32703987 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 34
32703894 ACATTACCAA
* * *
32703904 AAACATATATCCGATCAAAATGTCATATTTCTAG
1 AAACACATATCAGATCAAAATATCATATTTCTAG
* *
32703938 AAACATATATCAGATCAAAATATCA-ATTTTTAG
1 AAACACATATCAGATCAAAATATCATATTTCTAG
** *
32703971 AAGTACATATCATATCA
1 AAACACATATCAGATCA
32703988 TATTAGAACA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 20 0.47
34 23 0.53
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (34 bp):
AAACACATATCAGATCAAAATATCATATTTCTAG
Found at i:32706871 original size:19 final size:19
Alignment explanation
Indices: 32706849--32706906 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
32706839 AAATTTTATT
32706849 ATAATATTTAAATTTTTAA
1 ATAATATTTAAATTTTTAA
32706868 ATAA-A-TTAATATATTTT-A
1 ATAATATTTAA-AT-TTTTAA
* *
32706886 ATTATATTTAAAATTTTAA
1 ATAATATTTAAATTTTTAA
32706905 AT
1 AT
32706907 TAAGAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
17 4 0.12
18 11 0.34
19 13 0.41
20 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATAATATTTAAATTTTTAA
Found at i:32711678 original size:19 final size:16
Alignment explanation
Indices: 32711654--32711702 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 16
32711644 CATATTTTAT
32711654 ATTATTTATTTTTAATA
1 ATTATTT-TTTTTAATA
32711671 TCATTATTTTCTTTT-ATA
1 --ATTATTTT-TTTTAATA
32711689 ATTATTTTTTTTAA
1 ATTATTTTTTTTAA
32711703 CTTATTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 4 0.14
16 9 0.32
18 4 0.14
19 11 0.39
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTATTTTTTTTAATA
Found at i:32718884 original size:57 final size:57
Alignment explanation
Indices: 32718796--32718910 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
32718786 GTAATTTGAA
32718796 AGATTGGAAATTGTTTCCATTTACTGAAAGTATGTGATTATTGAAGACATGCTGAGC
1 AGATTGGAAATTGTTTCCATTTACTGAAAGTATGTGATTATTGAAGACATGCTGAGC
32718853 AGATTGGAAATTGTTTCCATTTACTGAAAGTATGTGATTATTGAAGACATGCTGAGC
1 AGATTGGAAATTGTTTCCATTTACTGAAAGTATGTGATTATTGAAGACATGCTGAGC
32718910 A
1 A
32718911 TGTCAAATGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (57 bp):
AGATTGGAAATTGTTTCCATTTACTGAAAGTATGTGATTATTGAAGACATGCTGAGC
Found at i:32720322 original size:24 final size:24
Alignment explanation
Indices: 32720294--32720475 Score: 109
Period size: 24 Copynumber: 7.5 Consensus size: 24
32720284 AGGCTCTTTT
32720294 ATGAGCTTCCCGATATTGGCTCGC
1 ATGAGCTTCCCGATATTGGCTCGC
* * *
32720318 ATGAGCTTCCTGATATTAGCTTGC
1 ATGAGCTTCCCGATATTGGCTCGC
* *
32720342 ATGAGCTTCTCGATATTGGCTTGC
1 ATGAGCTTCCCGATATTGGCTCGC
* * * * * *
32720366 TTGAACTTCTCGACATTGACTCGT
1 ATGAGCTTCCCGATATTGGCTCGC
* * *
32720390 ATGAGCTTTCC-ATTAATGGCTCTC
1 ATGAGCTTCCCGA-TATTGGCTCGC
** * **
32720414 CGGAGCTTCCC-ATTACATGGCTCAT
1 ATGAGCTTCCCGA-TA-TTGGCTCGC
*
32720439 ATGAGCTTCCC-ATTATATGGCTCGA
1 ATGAGCTTCCCGA-TAT-TGGCTCGC
*
32720464 AAGAGCTTCCCG
1 ATGAGCTTCCCG
32720476 TTTATATGCT
Statistics
Matches: 122, Mismatches: 32, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
23 1 0.01
24 85 0.70
25 36 0.30
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (24 bp):
ATGAGCTTCCCGATATTGGCTCGC
Found at i:32720494 original size:25 final size:25
Alignment explanation
Indices: 32720385--32720500 Score: 103
Period size: 25 Copynumber: 4.6 Consensus size: 25
32720375 TCGACATTGA
*
32720385 CTCGTATGAGCTTTCCATTA-ATGG
1 CTCGTATGAGCTTCCCATTATATGG
** *
32720409 CTC-TCCGGAGCTTCCCATTACATGG
1 CTCGT-ATGAGCTTCCCATTATATGG
*
32720434 CTCATATGAGCTTCCCATTATATGG
1 CTCGTATGAGCTTCCCATTATATGG
* * *
32720459 CTCGAAAGAGCTTCCCGTTTATAT-G
1 CTCGTATGAGCTTCCC-ATTATATGG
*
32720484 CTTGTATGAGCATTCCC
1 CTCGTATGAGC-TTCCC
32720501 TAATATGAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.01
24 15 0.20
25 46 0.62
26 12 0.16
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.34
Consensus pattern (25 bp):
CTCGTATGAGCTTCCCATTATATGG
Found at i:32722546 original size:9 final size:9
Alignment explanation
Indices: 32722532--32722559 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32722522 ACATTCGACT
32722532 TCAAAGAAA
1 TCAAAGAAA
32722541 TCAAAGAAA
1 TCAAAGAAA
32722550 TCAAAGAAA
1 TCAAAGAAA
32722559 T
1 T
32722560 ATCATGATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.64, C:0.11, G:0.11, T:0.14
Consensus pattern (9 bp):
TCAAAGAAA
Found at i:32723457 original size:22 final size:22
Alignment explanation
Indices: 32723429--32723473 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32723419 GTGTCAGTTG
32723429 TTTGTGAATATCCTGATGTATT
1 TTTGTGAATATCCTGATGTATT
32723451 TTTGTGAATATCCTGATGTATT
1 TTTGTGAATATCCTGATGTATT
32723473 T
1 T
32723474 CCCGAAGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.18, T:0.51
Consensus pattern (22 bp):
TTTGTGAATATCCTGATGTATT
Found at i:32727645 original size:24 final size:24
Alignment explanation
Indices: 32727618--32727718 Score: 76
Period size: 24 Copynumber: 3.9 Consensus size: 24
32727608 ATGCTCTTTT
32727618 ATGAGCTTCCCGATATTGGCTCGC
1 ATGAGCTTCCCGATATTGGCTCGC
*
32727642 ATGAGCTTCCTAATTCTCGATATTGGCTAGC
1 ATGAGCTT-C-----C-CGATATTGGCTCGC
* * * *
32727673 TTGAACTTCCCGACATTGGCTCGT
1 ATGAGCTTCCCGATATTGGCTCGC
* *
32727697 ATGAGCTTCCCGTTAATGGCTC
1 ATGAGCTTCCCGATATTGGCTC
32727719 TTCGGAACTT
Statistics
Matches: 59, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
24 36 0.61
25 2 0.03
30 2 0.03
31 19 0.32
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (24 bp):
ATGAGCTTCCCGATATTGGCTCGC
Found at i:32727751 original size:25 final size:26
Alignment explanation
Indices: 32727674--32727784 Score: 92
Period size: 25 Copynumber: 4.5 Consensus size: 26
32727664 TTGGCTAGCT
*
32727674 TGAACTTCCCG--ACATTGGCTCG-TA
1 TGAACTTCCCGTTACA-TGGCTCGACA
* **
32727698 TGAGCTTCCCGTTA-ATGGCTCTTC-
1 TGAACTTCCCGTTACATGGCTCGACA
*
32727722 GGAACTTCCCGTTACATGGCTC-ACA
1 TGAACTTCCCGTTACATGGCTCGACA
* *
32727747 TGAACTTCTCGTTATATGGCTCGA-A
1 TGAACTTCCCGTTACATGGCTCGACA
*
32727772 AGAACTTCCCGTT
1 TGAACTTCCCGTT
32727785 TATATACTTG
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
24 29 0.41
25 39 0.56
26 2 0.03
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.32
Consensus pattern (26 bp):
TGAACTTCCCGTTACATGGCTCGACA
Found at i:32730658 original size:15 final size:15
Alignment explanation
Indices: 32730638--32730689 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
32730628 ATTACAAAAC
32730638 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
32730653 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
32730672 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
32730687 ATT
1 ATT
32730690 AATGTTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:32730753 original size:16 final size:16
Alignment explanation
Indices: 32730722--32730758 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
32730712 ATGTGAAGAA
32730722 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
32730738 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
32730754 TATTA
1 TATTA
32730759 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:32730978 original size:27 final size:27
Alignment explanation
Indices: 32730926--32730978 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
32730916 TAAAATTTAT
* **
32730926 TATCAATATAATAATTTTTTTGTTGAA
1 TATCAATATAATAATTATTAAGTTGAA
32730953 TATCAATATAATAA-TATTAAGCTTGA
1 TATCAATATAATAATTATTAAG-TTGA
32730979 TTTAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.45
Consensus pattern (27 bp):
TATCAATATAATAATTATTAAGTTGAA
Found at i:32732651 original size:98 final size:98
Alignment explanation
Indices: 32732482--32732675 Score: 352
Period size: 98 Copynumber: 2.0 Consensus size: 98
32732472 ATACAATAAA
*
32732482 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
32732547 CCTTTAGAATCCCAAACTCGGAATATTTCCTAT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTAT
* *
32732580 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
32732645 CCTTTAGAATCTCAAACTCGGAATATTTCCT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCT
32732676 TCATGATTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTAT
Found at i:32733488 original size:19 final size:19
Alignment explanation
Indices: 32733464--32733595 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
32733454 AATCATATAT
32733464 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
32733483 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
32733502 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32733521 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
32733542 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
32733561 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32733580 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
32733596 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32733548 original size:59 final size:59
Alignment explanation
Indices: 32733457--32733594 Score: 221
Period size: 59 Copynumber: 2.4 Consensus size: 59
32733447 ATTACAAAAT
*
32733457 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
* *
32733512 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
32733571 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
32733595 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 58 0.76
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:32734126 original size:173 final size:173
Alignment explanation
Indices: 32733910--32734316 Score: 654
Period size: 173 Copynumber: 2.4 Consensus size: 173
32733900 TTTGCTCCAC
* * * * *
32733910 GCAACTTCAGGGAGATAGGAT-TATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 GCAACTTCAGAGAGATAAGATCTA-AGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA
* * * * * *
32733974 TTTGCCATCTTCAGTCTTCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTATTTAGTCTGCTT
65 CTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTACTC
* *
32734039 CACTGCAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCT
130 CACTACAACTTCAGGGAAATAAGACTAGATGCAATCTGCTCTCT
32734083 GCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAC
1 GCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAC
*
32734148 TTGCCATCTTCAGTCTGCCCCACTGCAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTACTCC
66 TTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTACTCC
*
32734213 ACTACAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCT
131 ACTACAACTTCAGGGAAATAAGACTAGATGCAATCTGCTCTCT
*
32734256 GCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATA
1 GCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
32734317 GGATCTACAA
Statistics
Matches: 217, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
173 215 0.99
174 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (173 bp):
GCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAC
TTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTACTCC
ACTACAACTTCAGGGAAATAAGACTAGATGCAATCTGCTCTCT
Found at i:32734127 original size:84 final size:85
Alignment explanation
Indices: 32733902--32734316 Score: 346
Period size: 89 Copynumber: 4.8 Consensus size: 85
32733892 GATTTTAATT
* * *
32733902 TGCTCCAC-GCAACTTCAGGGAGATAGGAT-TATCGGCTTTAATCTGCTCCACTGCAACTTCAGG
1 TGCT-CACTGCAACTTCA-GGAGATAAGATCTA-AGGTTTTAATCTGCTCCACTGCAACTTCAGG
* * * *
32733965 GAGATAAGATTTGCCATCTTCAGTC
63 GAGATAAGACTAG-CA-CTGCAATC
* * * * *
32733990 TTCCTCACTGCAACTTCAGGAGGATAAGA-CT-TGCTTATTTAGTCTGCTTCACTGCAACTTCAG
1 -TGCTCACTGCAACTTCAGGA-GATAAGATCTAAG-GT-TTTAATCTGCTCCACTGCAACTTCAG
32734053 GGAGATAAGACTAG-A-TGCAATC
62 GGAGATAAGACTAGCACTGCAATC
* *
32734075 TGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
1 TGCTCACTGCAACTTCAG-GAGATAAGATCTAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGA
* * *
32734140 GATAAGACTTGCCATCTTCAGTC
65 GATAAGACTAG-CA-CTGCAATC
* * * * * * *
32734163 TGCCCCACTGCAACTTGAGGAGGATAAGA-CT-TGCTTACTTAGTCTACTCCACTACAACTTCAG
1 TG-CTCACTGCAACTTCAGGA-GATAAGATCTAAGGTT--TTAATCTGCTCCACTGCAACTTCAG
* *
32734226 GGAAATAAGACTAG-A-TGCGATC
62 GGAGATAAGACTAGCACTGCAATC
* **
32734248 TGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGA
1 TGCTCACTGCAACTTCAG-GAGATAAGATCTAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGA
32734313 GATA
65 GATA
32734317 GGATCTACAA
Statistics
Matches: 263, Mismatches: 44, Indels: 43
0.75 0.13 0.12
Matches are distributed among these distances:
84 107 0.41
85 20 0.08
86 5 0.02
87 6 0.02
88 17 0.06
89 108 0.41
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (85 bp):
TGCTCACTGCAACTTCAGGAGATAAGATCTAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTAGCACTGCAATC
Found at i:32734305 original size:44 final size:42
Alignment explanation
Indices: 32733779--32734316 Score: 299
Period size: 44 Copynumber: 12.5 Consensus size: 42
32733769 TAGTCTGCCT
* * * * *
32733779 CACTGCAACTTCA-GGACGATAAGACTTGCTTATTTAGTCTACTT
1 CACTGCAACTTCAGGGA-GATAAGACTAG-GT-TTTAATCTGCTC
* *** *
32733823 CACTGCAACTTCAGGGAGATAAGACTA-GATGCGATCTG-TT
1 CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
* * *
32733863 CTCTGCAACTTCAGAGAGATAAGATCT-GTGATTTTAATTTGCTC
1 CACTGCAACTTCAGGGAGATAAGA-CTAG-G-TTTTAATCTGCTC
* * *
32733907 CAC-GCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTA--GGTTTTAATCTGCTC
* * * * * *
32733950 CACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTTC-C
1 CACTGCAACTTCAGGGAGATAAGACTAG--GT-TTTAATCTGCTC
* * * *
32733994 TCACTGCAACTTCA-GGAGGATAAGACTTGCTTATTTAGTCTGCTT
1 -CACTGCAACTTCAGGGA-GATAAGACTAG-GT-TTTAATCTGCTC
* **
32734039 CACTGCAACTTCAGGGAGATAAGACTA-GATGCAATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
* * *
32734079 CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGGAGATAAGA-CT-AGGTTTTAATCTGCTC
* * * * *
32734123 CACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCC
1 CACTGCAACTTCAGGGAGATAAGACTAG--GT-TTTAATCTGCTC
* * * * *
32734168 CACTGCAACTTGA-GGAGGATAAGACTTGCTTACTTAGTCTACTC
1 CACTGCAACTTCAGGGA-GATAAGACTAGGTT--TTAATCTGCTC
* * * ***
32734212 CACTACAACTTCAGGGAAATAAGACTA-GATGCGATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
* * **
32734252 CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
1 CACTGCAACTTCAGGGAGATAAGA-CT-AGGTTTTAATCTGCTC
32734296 CACTGCAACTTCAGGGAGATA
1 CACTGCAACTTCAGGGAGATA
32734317 GGATCTACAA
Statistics
Matches: 379, Mismatches: 83, Indels: 64
0.72 0.16 0.12
Matches are distributed among these distances:
40 66 0.17
41 23 0.06
42 7 0.02
43 57 0.15
44 155 0.41
45 71 0.19
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (42 bp):
CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
Found at i:32734448 original size:44 final size:44
Alignment explanation
Indices: 32734400--32734886 Score: 205
Period size: 44 Copynumber: 11.1 Consensus size: 44
32734390 TATCTTGGAA
*
32734400 AGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * * ** *
32734444 AGATAAGATCTACAATCTTCAACCTTCTCTGCTGCTGCTTAGGG
1 AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * ** * *
32734488 AGGCAAG-GCT-TGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTACCGT--CTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
32734532 AGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * * ** *
32734576 AGATAAGATCTACAATCTTCAACCTTCTCTGCTGCTGCTTAGGG
1 AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * ** * *
32734620 AGGCAAG-GCT-TGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTACCGT--CTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
32734664 AGATAAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCT-ACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * * * *
32734708 AGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTGAGGG
1 AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
32734752 AGACAAG-GCT-TGGTCGCTTAAATCTTCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTACCGT--CTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** * *
32734796 AGATAATATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * * * * *
32734840 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
32734884 AGA
1 AGA
32734887 CAAGGCTTGG
Statistics
Matches: 314, Mismatches: 97, Indels: 64
0.66 0.20 0.13
Matches are distributed among these distances:
42 21 0.07
43 18 0.06
44 243 0.77
45 16 0.05
46 16 0.05
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATCTACCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:32734448 original size:132 final size:132
Alignment explanation
Indices: 32734308--32734960 Score: 1094
Period size: 132 Copynumber: 4.9 Consensus size: 132
32734298 CTGCAACTTC
* * **
32734308 AGGGAGATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCATAATGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
32734373 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGC
32734438 TT
131 TT
* * *
32734440 AGGGAGATAAGATCTACAATCTTCAACCTTCTCTGCTGCTGCTTAGGGAGGCAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
32734505 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGC
32734570 TT
131 TT
* * *
32734572 AGGGAGATAAGATCTACAATCTTCAACCTTCTCTGCTGCTGCTTAGGGAGGCAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
*
32734637 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT-TCGCCGTCTTCGATCTGCTCCACTACTG
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCT-ACCGTCTTCGATCTGCTCCACTACTG
32734701 CTT
130 CTT
* *
32734704 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTGAGGGAGACAAGGCTTGGTCGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* * ** *
32734769 TTAAATCTTCTTCCCACTATCTTGGAAAGATAATATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGC
32734834 TT
131 TT
*
32734836 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
*
32734901 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCT-TCGTCTTCGATCTGCTCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGA-TCTACCGTCTTCGATCTGCTCCACT
32734961 GTCAATGCAG
Statistics
Matches: 493, Mismatches: 25, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
131 1 0.00
132 490 0.99
133 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCTACCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:32736545 original size:12 final size:12
Alignment explanation
Indices: 32736530--32736578 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
32736520 TTTCTTTCAC
*
32736530 TTTTATTTTTTG
1 TTTTTTTTTTTG
*
32736542 TTTTGTTTTTTG
1 TTTTTTTTTTTG
32736554 TTTTTTGTTTTTG
1 TTTTTT-TTTTTG
32736567 TTTTTTTTTTTG
1 TTTTTTTTTTTG
32736579 AATCTGAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
12 22 0.65
13 12 0.35
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:32736552 original size:7 final size:7
Alignment explanation
Indices: 32736530--32736577 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
32736520 TTTCTTTCAC
*
32736530 TTTTATT
1 TTTTGTT
32736537 TTTTG--
1 TTTTGTT
32736542 TTTTGTT
1 TTTTGTT
32736549 TTTTGTT
1 TTTTGTT
32736556 TTTTG-T
1 TTTTGTT
32736562 TTTTGTT
1 TTTTGTT
32736569 TTTT-TT
1 TTTTGTT
32736575 TTT
1 TTT
32736578 GAATCTGAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
5 5 0.14
6 11 0.30
7 21 0.57
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (7 bp):
TTTTGTT
Found at i:32736552 original size:19 final size:19
Alignment explanation
Indices: 32736530--32736577 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
32736520 TTTCTTTCAC
*
32736530 TTTTATTTTTTG-TTTTGT
1 TTTTTTTTTTTGTTTTTGT
32736548 TTTTTGTTTTTTGTTTTTGT
1 TTTTT-TTTTTTGTTTTTGT
32736568 TTTTTTTTTT
1 TTTTTTTTTT
32736578 GAATCTGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 12 0.44
20 11 0.41
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTTTGTTTTTGT
Found at i:32737107 original size:92 final size:92
Alignment explanation
Indices: 32736950--32737133 Score: 332
Period size: 92 Copynumber: 2.0 Consensus size: 92
32736940 ATCTTTGAAC
* *
32736950 TCTTTGACGTAACTCAACAAGGTCATGCTTCATTTCTTCAGTTATGCATGCTATCTTAAAGTCAC
1 TCTTTGAAGTAACTCAACAAGGTCATGCTTCATTTCTTCAGTTATGCACGCTATCTTAAAGTCAC
32737015 AACCTCCATTGTCCCCTCATGAAGTAA
66 AACCTCCATTGTCCCCTCATGAAGTAA
*
32737042 TCTTTGAAGTAACTCAACAAGGTCATGCTTCATTTCTTCGGTTATGCACGCTATCTTAAAGTCAC
1 TCTTTGAAGTAACTCAACAAGGTCATGCTTCATTTCTTCAGTTATGCACGCTATCTTAAAGTCAC
*
32737107 AATCTCCATTGTCCCCTCATGAAGTAA
66 AACCTCCATTGTCCCCTCATGAAGTAA
32737134 GATTTCATTC
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 88 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.34
Consensus pattern (92 bp):
TCTTTGAAGTAACTCAACAAGGTCATGCTTCATTTCTTCAGTTATGCACGCTATCTTAAAGTCAC
AACCTCCATTGTCCCCTCATGAAGTAA
Found at i:32739251 original size:14 final size:14
Alignment explanation
Indices: 32739232--32739283 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 14
32739222 TGTATTTATT
32739232 AATGCATATGAAAC
1 AATGCATATGAAAC
*
32739246 AATGCAATGCATGAAATG
1 AATGC-AT--ATGAAA-C
32739264 AATGCATATGAAAC
1 AATGCATATGAAAC
32739278 AATGCA
1 AATGCA
32739284 CTGCATGGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 11 0.34
15 8 0.25
17 8 0.25
18 5 0.16
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.21
Consensus pattern (14 bp):
AATGCATATGAAAC
Found at i:32739256 original size:19 final size:19
Alignment explanation
Indices: 32739232--32739289 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
32739222 TGTATTTATT
32739232 AATGCATATGAAACAATGC
1 AATGCATATGAAACAATGC
32739251 AATGC--ATG--A-AATG-
1 AATGCATATGAAACAATGC
32739264 AATGCATATGAAACAATGC
1 AATGCATATGAAACAATGC
*
32739283 ACTGCAT
1 AATGCAT
32739290 GGAATGAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
13 5 0.16
14 4 0.12
15 4 0.12
17 4 0.12
18 4 0.12
19 11 0.34
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.22
Consensus pattern (19 bp):
AATGCATATGAAACAATGC
Found at i:32739269 original size:18 final size:18
Alignment explanation
Indices: 32739246--32739301 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
32739236 CATATGAAAC
32739246 AATGCAATGCATGAAATG
1 AATGCAATGCATGAAATG
*
32739264 AATGC-AT--ATGAAA-C
1 AATGCAATGCATGAAATG
* *
32739278 AATGCACTGCATGGAATG
1 AATGCAATGCATGAAATG
32739296 AATGCA
1 AATGCA
32739302 GAAAAGGCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 5 0.17
15 7 0.23
17 7 0.23
18 11 0.37
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.21
Consensus pattern (18 bp):
AATGCAATGCATGAAATG
Found at i:32739269 original size:32 final size:32
Alignment explanation
Indices: 32739232--32739301 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
32739222 TGTATTTATT
32739232 AATGCATATGAAACAATGCAATGCATGAAATG
1 AATGCATATGAAACAATGCAATGCATGAAATG
* *
32739264 AATGCATATGAAACAATGCACTGCATGGAATG
1 AATGCATATGAAACAATGCAATGCATGAAATG
32739296 AATGCA
1 AATGCA
32739302 GAAAAGGCGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.21
Consensus pattern (32 bp):
AATGCATATGAAACAATGCAATGCATGAAATG
Found at i:32742791 original size:24 final size:25
Alignment explanation
Indices: 32742762--32742809 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
32742752 ATATAAATAT
32742762 GAAAATATTC-ATTAAAAAATATAG
1 GAAAATATTCGATTAAAAAATATAG
* *
32742786 GAAAATATTCGTTTTAAAAATATA
1 GAAAATATTCGATTAAAAAATATA
32742810 TATATACATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.33
Consensus pattern (25 bp):
GAAAATATTCGATTAAAAAATATAG
Found at i:32743668 original size:19 final size:19
Alignment explanation
Indices: 32743577--32743659 Score: 148
Period size: 19 Copynumber: 4.4 Consensus size: 19
32743567 AATCATATAT
*
32743577 TCTAAGATTGCATATCATA
1 TCTAAGATTGTATATCATA
*
32743596 TCTAAGATTATATATCATA
1 TCTAAGATTGTATATCATA
32743615 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
32743634 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
32743653 TCTAAGA
1 TCTAAGA
32743660 GTGCATATCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 61 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGTATATCATA
Found at i:32745514 original size:61 final size:61
Alignment explanation
Indices: 32745435--32745560 Score: 162
Period size: 61 Copynumber: 2.1 Consensus size: 61
32745425 TATTTTTAAC
* * * * ** *
32745435 TTTTAGAATTAGAACTAAATTGAAAAATTTTGTAAATGTTGGGGGCTAAATTTATTGAATT
1 TTTTAGAACTAAAACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
* * *
32745496 TTTTAGAACTAAAACTAAAATGACAACTTTTATAAACATTGAGGGCTAAATTTGTTGAATT
1 TTTTAGAACTAAAACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
32745557 TTTT
1 TTTT
32745561 GGATTTAGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (61 bp):
TTTTAGAACTAAAACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
Found at i:32752900 original size:39 final size:40
Alignment explanation
Indices: 32752805--32753027 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
32752795 TTGAATGATG
*
32752805 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
32752843 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
32752884 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32752923 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32752962 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32753001 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32753028 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32752991 original size:79 final size:81
Alignment explanation
Indices: 32752805--32753027 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
32752795 TTGAATGATG
* * *
32752805 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
32752866 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
32752884 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
32752946 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
32752962 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
32753026 TG
66 TG
32753028 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:32753049 original size:79 final size:79
Alignment explanation
Indices: 32752805--32753060 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
32752795 TTGAATGATG
* * * *
32752805 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
32752866 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
32752884 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
32752948 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
32752962 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
32753026 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
32753042 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
32753061 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:32760929 original size:79 final size:81
Alignment explanation
Indices: 32760793--32760977 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
32760783 TTGAATGATG
*
32760793 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32760857 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32760872 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32760934 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
32760952 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32760978 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:32760991 original size:40 final size:40
Alignment explanation
Indices: 32760794--32760977 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
32760784 TGAATGATGT
* * * *
32760794 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32760834 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32760874 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32760912 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32760953 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32760978 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32760999 original size:79 final size:79
Alignment explanation
Indices: 32760846--32761010 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
32760836 GGACTAAGAT
* **
32760846 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32760911 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32760925 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32760988 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32761004 CCGAAGG
1 CCGAAGG
32761011 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32771221 original size:36 final size:36
Alignment explanation
Indices: 32771166--32771256 Score: 112
Period size: 36 Copynumber: 2.5 Consensus size: 36
32771156 ACATCGATAT
32771166 TCCAACCGAAACACACCAGATGCTCATAAGAGCTAA
1 TCCAACCGAAACACACCAGATGCTCATAAGAGCTAA
* * * * *
32771202 TCCATCCGAAACACGCCAGATGCTCATACGAGCCAG
1 TCCAACCGAAACACACCAGATGCTCATAAGAGCTAA
32771238 TCC-ACTCGATAACACACCA
1 TCCAAC-CGA-AACACACCA
32771257 ATGGCTCCGA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
35 1 0.02
36 37 0.80
37 8 0.17
ACGTcount: A:0.36, C:0.35, G:0.14, T:0.14
Consensus pattern (36 bp):
TCCAACCGAAACACACCAGATGCTCATAAGAGCTAA
Found at i:32772648 original size:15 final size:15
Alignment explanation
Indices: 32772628--32772658 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32772618 TATAGATGCC
32772628 ACAATAACAAATACA
1 ACAATAACAAATACA
*
32772643 ACAATAATAAATACA
1 ACAATAACAAATACA
32772658 A
1 A
32772659 TAATGGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (15 bp):
ACAATAACAAATACA
Found at i:32772816 original size:17 final size:20
Alignment explanation
Indices: 32772778--32772813 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
32772768 AACATAAGTC
32772778 AATAAACAAATGAAAGAAAT
1 AATAAACAAATGAAAGAAAT
32772798 AATAAA-AAAT-AAAGAA
1 AATAAACAAATGAAAGAA
32772814 TAAAGATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.38
19 4 0.25
20 6 0.38
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.14
Consensus pattern (20 bp):
AATAAACAAATGAAAGAAAT
Found at i:32773197 original size:23 final size:22
Alignment explanation
Indices: 32773167--32773236 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 22
32773157 ACATAGATTT
*
32773167 AAATAAAATAATTAAATATGAAA
1 AAATAAAATAATTAAAAAT-AAA
*
32773190 AAATAAAA-AAATACAAAATAAA
1 AAATAAAATAATTA-AAAATAAA
*
32773212 AAATAAAAATTAATTAATAA-AAA
1 AAAT-AAAA-TAATTAAAAATAAA
32773235 AA
1 AA
32773237 CTAATTTGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
22 11 0.28
23 21 0.54
24 3 0.08
25 4 0.10
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.21
Consensus pattern (22 bp):
AAATAAAATAATTAAAAATAAA
Found at i:32773199 original size:7 final size:7
Alignment explanation
Indices: 32773167--32773235 Score: 57
Period size: 7 Copynumber: 9.4 Consensus size: 7
32773157 ACATAGATTT
32773167 AAATAAA
1 AAATAAA
*
32773174 ATAATTAA
1 A-AATAAA
*
32773182 ATATGAAA
1 AAAT-AAA
32773190 AAATAAAA
1 AAAT-AAA
*
32773198 AAATACA
1 AAATAAA
32773205 AAATAAA
1 AAATAAA
32773212 AAATAAA
1 AAATAAA
* *
32773219 AATTAAT
1 AAATAAA
*
32773226 TAATAAA
1 AAATAAA
32773233 AAA
1 AAA
32773236 ACTAATTTGA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
7 29 0.62
8 18 0.38
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.22
Consensus pattern (7 bp):
AAATAAA
Found at i:32775123 original size:267 final size:267
Alignment explanation
Indices: 32774664--32775272 Score: 923
Period size: 267 Copynumber: 2.3 Consensus size: 267
32774654 CGCTGTCATA
* * * *
32774664 GCTTCAATTTGTTTCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCACGGCTTCAGTCTTTTAA
1 GCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGCGGCTTCAGTCTTTTAA
* *
32774729 ATTGCAATGTTGAGGAAACGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACATCGCCAGGG
66 ATTGCAATGTTGAGGAAACGAGATTCACCGTCGTAGCTTCAATCTATTCCACTACATCGCCAGGG
* * *
32774794 AAGTAAGATTCACCGTCGTGGTTTTAATCTGCTCCACTGTAATGCTAAAGAGATAGGATTCGCTG
131 AAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGCTAAACAGATAGGATTCGCTG
32774859 CCCACAGCTTTAATCCACTCCACTTAAGCTAATCCAAACCTTAACACTAGGGAGATAAGATTCAC
196 CCCACAGCTTTAATCCACTCCACTTAAGCTAATCCAAACCTTAACACTAGGGAGATAAGATTCAC
32774924 CGTCGTG
261 CGTCGTG
* *
32774931 GCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCTCAGTCGCGGCTTCAGTCTTTTAA
1 GCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGCGGCTTCAGTCTTTTAA
* * *
32774996 ATTGCAATGTTGAGGAAATGAGATTCACCGTCGTAGCTTCAATCTGTTCCACTATA-CTGCCAGG
66 ATTGCAATGTTGAGGAAACGAGATTCACCGTCGTAGCTTCAATCTATTCCACTACATC-GCCAGG
*
32775060 GAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCTACTGTAATGCTAAACAGATAGGATTCGCT
130 GAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGCTAAACAGATAGGATTCGCT
* * * * *
32775125 GCCCACAGCTTTAATCCGCTCCACTTCAGCTACTCCAAGCCTTAACACTAGGGAGATAAGATTCG
195 GCCCACAGCTTTAATCCACTCCACTTAAGCTAATCCAAACCTTAACACTAGGGAGATAAGATTCA
**
32775190 TTGTCGTG
260 CCGTCGTG
* * * * * * * **
32775198 GCTTCAATCTGCTCCGCTACAATGCTAGGGAAATAAGATTCGCCGTTGTGGCTTCAATCTTTTCC
1 GCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGCGGCTTCAGTCTTTTAA
32775263 ATTGCAATGT
66 ATTGCAATGT
32775273 CAAAGCGATA
Statistics
Matches: 308, Mismatches: 33, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
266 1 0.00
267 307 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (267 bp):
GCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGCGGCTTCAGTCTTTTAA
ATTGCAATGTTGAGGAAACGAGATTCACCGTCGTAGCTTCAATCTATTCCACTACATCGCCAGGG
AAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGCTAAACAGATAGGATTCGCTG
CCCACAGCTTTAATCCACTCCACTTAAGCTAATCCAAACCTTAACACTAGGGAGATAAGATTCAC
CGTCGTG
Found at i:32793925 original size:30 final size:30
Alignment explanation
Indices: 32793886--32793982 Score: 124
Period size: 30 Copynumber: 3.3 Consensus size: 30
32793876 CTTAGCCCGA
*
32793886 ATGAG-AAATCTATTATAATGTCAGCTTGT
1 ATGAGCAAATCTATTATAATGACAGCTTGT
** *
32793915 ATGAGCAAATCTATTATAACAACAACTTGT
1 ATGAGCAAATCTATTATAATGACAGCTTGT
* *
32793945 GTGAGCAAATCCATTATAATGACAGCTTGT
1 ATGAGCAAATCTATTATAATGACAGCTTGT
*
32793975 GTGAGCAA
1 ATGAGCAA
32793983 TTTTATCATA
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
29 5 0.09
30 53 0.91
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (30 bp):
ATGAGCAAATCTATTATAATGACAGCTTGT
Done.