Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 104 of 185
Found at i:32801031 original size:13 final size:13
Alignment explanation
Indices: 32801013--32801037 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32801003 AATCACTTTC
32801013 TCTTTTTTTTTTT
1 TCTTTTTTTTTTT
32801026 TCTTTTTTTTTT
1 TCTTTTTTTTTT
32801038 GAGTGTGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TCTTTTTTTTTTT
Found at i:32801033 original size:15 final size:15
Alignment explanation
Indices: 32801009--32801037 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32800999 CCTAAATCAC
32801009 TTTCTCTTTTTTTTT
1 TTTCTCTTTTTTTTT
32801024 TTTCT-TTTTTTTTT
1 TTTCTCTTTTTTTTT
32801038 GAGTGTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTCTCTTTTTTTTT
Found at i:32808716 original size:50 final size:51
Alignment explanation
Indices: 32808601--32808736 Score: 179
Period size: 50 Copynumber: 2.7 Consensus size: 51
32808591 GATATTAACA
**
32808601 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGG
* * *
32808652 TGTCC-ATGTCATGTCCCAGACATGGTCTTACGA-GGGA-CCTCTCATCTCGG
1 TG-CCAAAGCCATGTCCCAGACATGGTCTTAC-ATGGGATCCTCTCATATCGG
*
32808702 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGG
32808737 TAGCAAAAGT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
49 3 0.04
50 38 0.51
51 30 0.41
52 3 0.04
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (51 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGG
Found at i:32818670 original size:6 final size:7
Alignment explanation
Indices: 32818653--32818679 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32818643 AATCATACAA
32818653 AAAAAAG
1 AAAAAAG
32818660 AAAAAAG
1 AAAAAAG
32818667 AAAAAAG
1 AAAAAAG
32818674 AAAAAA
1 AAAAAA
32818680 TGGAAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:32820730 original size:2 final size:2
Alignment explanation
Indices: 32820723--32820762 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
32820713 GGTTACAATC
32820723 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32820763 TTCATGAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32826376 original size:17 final size:18
Alignment explanation
Indices: 32826347--32826383 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
32826337 TTTTTTTATT
32826347 TTATATAGATATAAATAC
1 TTATATAGATATAAATAC
*
32826365 TTATAT-GATATATATAC
1 TTATATAGATATAAATAC
32826382 TT
1 TT
32826384 TACACTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
TTATATAGATATAAATAC
Found at i:32829746 original size:31 final size:31
Alignment explanation
Indices: 32829711--32829772 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
32829701 TAAGCATAGC
32829711 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
1 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
32829742 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
1 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
32829773 GTATAGTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (31 bp):
TCTGAGAAAGTAAGATGTTAATTTTATTTAA
Found at i:32833824 original size:271 final size:271
Alignment explanation
Indices: 32833341--32833885 Score: 1081
Period size: 271 Copynumber: 2.0 Consensus size: 271
32833331 ACATTTCAAC
32833341 AATGAACTTTATAGATTAAATATAAACCTATACCAATACCTCAAGATTTATCCACTACATAACCA
1 AATGAACTTTATAGATTAAATATAAACCTATACCAATACCTCAAGATTTATCCACTACATAACCA
32833406 TCAACTCATAAATGAGTAAATAACATCATATATATATATTTTTCATTCCTAATTTAATAGGATTT
66 TCAACTCATAAATGAGTAAATAACATCATATATATATATTTTTCATTCCTAATTTAATAGGATTT
*
32833471 TATAAACATTATACACCGTCATTAACTTTTTCATAAAACTATGAATTATTTCCTTTACTTACTTT
131 TATAAACATTATACACCGTCATTAACCTTTTCATAAAACTATGAATTATTTCCTTTACTTACTTT
32833536 CCATTCCATTTACTAAGCATAAACTTAAATAACAACATCAACTCACTAATTAGTGTATTTATTCA
196 CCATTCCATTTACTAAGCATAAACTTAAATAACAACATCAACTCACTAATTAGTGTATTTATTCA
32833601 CATCATAGGTA
261 CATCATAGGTA
32833612 AATGAACTTTATAGATTAAATATAAACCTATACCAATACCTCAAGATTTATCCACTACATAACCA
1 AATGAACTTTATAGATTAAATATAAACCTATACCAATACCTCAAGATTTATCCACTACATAACCA
32833677 TCAACTCATAAATGAGTAAATAACATCATATATATATATTTTTCATTCCTAATTTAATAGGATTT
66 TCAACTCATAAATGAGTAAATAACATCATATATATATATTTTTCATTCCTAATTTAATAGGATTT
32833742 TATAAACATTATACACCGTCATTAACCTTTTCATAAAACTATGAATTATTTCCTTTACTTACTTT
131 TATAAACATTATACACCGTCATTAACCTTTTCATAAAACTATGAATTATTTCCTTTACTTACTTT
32833807 CCATTCCATTTACTAAGCATAAACTTAAATAACAACATCAACTCACTAATTAGTGTATTTATTCA
196 CCATTCCATTTACTAAGCATAAACTTAAATAACAACATCAACTCACTAATTAGTGTATTTATTCA
32833872 CATCATAGGTA
261 CATCATAGGTA
32833883 AAT
1 AAT
32833886 TCATCCATAA
Statistics
Matches: 273, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
271 273 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (271 bp):
AATGAACTTTATAGATTAAATATAAACCTATACCAATACCTCAAGATTTATCCACTACATAACCA
TCAACTCATAAATGAGTAAATAACATCATATATATATATTTTTCATTCCTAATTTAATAGGATTT
TATAAACATTATACACCGTCATTAACCTTTTCATAAAACTATGAATTATTTCCTTTACTTACTTT
CCATTCCATTTACTAAGCATAAACTTAAATAACAACATCAACTCACTAATTAGTGTATTTATTCA
CATCATAGGTA
Found at i:32834494 original size:21 final size:21
Alignment explanation
Indices: 32834468--32834528 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
32834458 ACACACCAAT
*
32834468 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCAAAAGAGCTGAAC
*
32834489 AGAAGCTCAAAAGAGCTGAAT
1 AGAAGCTCAAAAGAGCTGAAC
* *
32834510 AGAAGCTTAAAAAAGCTGA
1 AGAAGCTCAAAAGAGCTGA
32834529 TCCACTAGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.48, C:0.15, G:0.23, T:0.15
Consensus pattern (21 bp):
AGAAGCTCAAAAGAGCTGAAC
Found at i:32836307 original size:26 final size:26
Alignment explanation
Indices: 32836266--32836336 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 26
32836256 AGCCATATCG
*
32836266 GGAAGCTC-CAGAGAGCCATTAATCA
1 GGAAGCTCACAAAGAGCCATTAATCA
* * *
32836291 GGAAGTTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAGCCATTAATCA
* *
32836317 GGTAGCTCACGAAGAGCCAT
1 GGAAGCTCACAAAGAGCCAT
32836337 ATATCGGGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
25 7 0.19
26 30 0.81
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCATTAATCA
Found at i:32844834 original size:50 final size:50
Alignment explanation
Indices: 32844523--32844835 Score: 493
Period size: 50 Copynumber: 6.3 Consensus size: 50
32844513 CATTGAGATT
* *
32844523 ATGAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* *
32844573 ATGAGAGGTCCTATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* *
32844623 ATGAGAGGTCCTATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * * * *
32844673 ATGAGAGGTCTCATATAAGACCATGTCTTGGACATGGCATTGGCACTGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
32844723 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* *
32844773 ATGAGAGGTCCCATGTAAGACCATATCTGAGACATGGCGTTGGCACC-AGG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-G
32844823 ATGAGAGGTCCCA
1 ATGAGAGGTCCCA
32844836 AAGAATGTAT
Statistics
Matches: 244, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
49 1 0.00
50 243 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:32846068 original size:23 final size:23
Alignment explanation
Indices: 32846034--32846084 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
32846024 GGGAGAGAAA
*
32846034 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
32846057 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
32846080 AGTAA
1 TGTAA
32846085 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:32850858 original size:24 final size:24
Alignment explanation
Indices: 32850831--32850910 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
32850821 CTGTATAACA
32850831 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCG
**
32850855 GGAAGCTCATGTGAGCCAATAA-CG
1 GGAAGCTCATAAGAGCC-ATAATCG
* **
32850879 GGTAGCTCCGAAGAGCCATTAAT-G
1 GGAAGCTCATAAGAGCCA-TAATCG
32850903 GGAAGCTC
1 GGAAGCTC
32850911 CGGATAGCCA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
23 1 0.02
24 40 0.89
25 4 0.09
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCG
Found at i:32850911 original size:24 final size:24
Alignment explanation
Indices: 32850831--32850932 Score: 82
Period size: 24 Copynumber: 4.2 Consensus size: 24
32850821 CTGTATAACA
**
32850831 GGAAGCTCATAAGAGCCA-TAATCG
1 GGAAGCTCCGAAGAGCCATTAAT-G
* * * *
32850855 GGAAGCTCATG-TGAGCCAATAACG
1 GGAAGCTC-CGAAGAGCCATTAATG
*
32850879 GGTAGCTCCGAAGAGCCATTAATG
1 GGAAGCTCCGAAGAGCCATTAATG
* *
32850903 GGAAGCTCCGGATAGCCATATAATG
1 GGAAGCTCCGAAGAGCCAT-TAATG
32850928 GGAAG
1 GGAAG
32850933 TTCAAGCGAG
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
23 1 0.02
24 48 0.77
25 13 0.21
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (24 bp):
GGAAGCTCCGAAGAGCCATTAATG
Found at i:32868372 original size:57 final size:58
Alignment explanation
Indices: 32868270--32868395 Score: 184
Period size: 58 Copynumber: 2.2 Consensus size: 58
32868260 GAATAAAAAT
*
32868270 AATGAAAATGGAGAAATGATAAATATTTGGAAATAATTATAG-TTTTCTTCAAAATGAA
1 AATGAAAATGGAGAAATGA-AAATATTTGGAAATAATTATAGTTTTTCTCCAAAATGAA
* * *
32868328 AATGAAAATGGATAAATG-AAATCATTTGGAAATGATTATGGTTTTTCTCCAAAATGAA
1 AATGAAAATGGAGAAATGAAAAT-ATTTGGAAATAATTATAGTTTTTCTCCAAAATGAA
32868386 AATGAAAATG
1 AATGAAAATG
32868396 ACCTGGAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
56 4 0.06
57 16 0.26
58 42 0.68
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.32
Consensus pattern (58 bp):
AATGAAAATGGAGAAATGAAAATATTTGGAAATAATTATAGTTTTTCTCCAAAATGAA
Found at i:32875092 original size:19 final size:18
Alignment explanation
Indices: 32875070--32875114 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
32875060 ATAAACACCA
32875070 AAAAATTATTTAAAAAAAT
1 AAAAATTATTT-AAAAAAT
* * *
32875089 AAAAAATATTTTAAAATT
1 AAAAATTATTTAAAAAAT
32875107 AAAAATTA
1 AAAAATTA
32875115 AAAAAAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATTATTTAAAAAAT
Found at i:32879804 original size:247 final size:247
Alignment explanation
Indices: 32879363--32879865 Score: 927
Period size: 247 Copynumber: 2.0 Consensus size: 247
32879353 TTATTTACCA
* *
32879363 AAATGATCCACTTGTAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
1 AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
*
32879428 TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGGGATTTAATGGAACA
66 TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGAGATTTAATGGAACA
32879493 ATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAAG
131 ATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAAG
* *
32879558 CTTTTTAATATTTTGATCTATTTGCATATATGATTCTTTTGAAATTAAATTT
196 CTTTTTAATATTTTGATCTATTTACATATATGATCCTTTTGAAATTAAATTT
32879610 AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
1 AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
32879675 TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGAGATTTAAT-GAAGC
66 TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGAGATTTAATGGAA-C
* *
32879739 AATTACCCTTTTTAGGTTGAATAAAAAAAAGTTGCCCCAACCCTACTCGCGACACCCAATTAAAA
130 AATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAA
32879804 GCTTTTTAATATTTTGATCTATTTACATATATGATCCTTTTGAAATTAAATTT
195 GCTTTTTAATATTTTGATCTATTTACATATATGATCCTTTTGAAATTAAATTT
32879857 AAATAATCC
1 AAATAATCC
32879866 TTACCAAATA
Statistics
Matches: 248, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
246 3 0.01
247 245 0.99
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (247 bp):
AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGAGATTTAATGGAACA
ATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAAG
CTTTTTAATATTTTGATCTATTTACATATATGATCCTTTTGAAATTAAATTT
Found at i:32888941 original size:18 final size:19
Alignment explanation
Indices: 32888903--32888945 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
32888893 GAAGAATAAG
*
32888903 TGAAATATAGTGTGAAAAT
1 TGAAATATAATGTGAAAAT
*
32888922 TGAAATTTAATGTG-AAAT
1 TGAAATATAATGTGAAAAT
32888940 TGAAAT
1 TGAAAT
32888946 GTGTAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.35
Consensus pattern (19 bp):
TGAAATATAATGTGAAAAT
Found at i:32890643 original size:28 final size:28
Alignment explanation
Indices: 32890585--32890655 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
32890575 ATGGCCTGGC
* *
32890585 CACACGGGCGTGTGTCACACATGCAACA
1 CACATGGGCGTGTGTCACACAGGCAACA
32890613 CACATGGGCGTGTGTCACACACGGGCAACA
1 CACATGGGCGTGTGTCACACA--GGCAACA
* *
32890643 CATATGGACGTGT
1 CACATGGGCGTGT
32890656 AACCCAAGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 20 0.54
30 17 0.46
ACGTcount: A:0.27, C:0.28, G:0.28, T:0.17
Consensus pattern (28 bp):
CACATGGGCGTGTGTCACACAGGCAACA
Found at i:32892691 original size:18 final size:19
Alignment explanation
Indices: 32892668--32892708 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
32892658 ATGTTAAATT
32892668 TGAATA-TTTTTTTTCTAA
1 TGAATATTTTTTTTTCTAA
32892686 TGAATATTTTTTTTTCTAA
1 TGAATATTTTTTTTTCTAA
32892705 TGAA
1 TGAA
32892709 ACAACATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (19 bp):
TGAATATTTTTTTTTCTAA
Found at i:32893193 original size:16 final size:16
Alignment explanation
Indices: 32893172--32893286 Score: 151
Period size: 16 Copynumber: 7.2 Consensus size: 16
32893162 TGAATTATTG
*
32893172 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
*
32893188 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
*
32893204 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
32893220 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
32893236 ATTATAGC-CTTATTCC
1 ATTACAGCTC-TATTCC
*
32893252 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
* *
32893268 ATTATAGCCCTATTCC
1 ATTACAGCTCTATTCC
32893284 ATT
1 ATT
32893287 CCAGTGAACC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
15 1 0.01
16 86 0.98
17 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:32896130 original size:291 final size:291
Alignment explanation
Indices: 32895601--32896147 Score: 853
Period size: 291 Copynumber: 1.9 Consensus size: 291
32895591 ACTCAGTTCT
*
32895601 TCATTGATTTGTTGGTTTTTGACTATTTCTTCAGTAACTGAATCGAAATATGAATTTGTATTGTT
1 TCATTGATTTGTTGGTTATTGACTATTTCTTCAGTAACTGAATCGAAATATGAATTTGTATTGTT
* * *
32895666 GACATAAGCGAGGTTGCTACAATGTGTCAATAGAAGTACCCACTCCTATTACTACTACAACAAAA
66 GACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCTATCACTACTACAACAAAA
* * * *
32895731 CAACTTGTCTGTTTTGAAATATTGACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCGT
131 CAACTTGTCTGCTTTAAAAGATTCACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCGT
* * *
32895796 GGAAAAATTTAATCCCATAAATGAAAATTAATTCACTTGGAGAAACATATCTTAAGAATCAAATA
196 GGAAAAATATAATCCCATAAATGAAAATTAATTCACATGGAGAAACATATCTAAAGAATCAAATA
32895861 TCCTAAAAAATATCTAACATTTAAGATATAC
261 TCCTAAAAAATATCTAACATTTAAGATATAC
*
32895892 TCATTGATTTGTTGGTTATTGACTATTTCTT-TGATAACTGAATCGAAATATGAATTTGTATTGT
1 TCATTGATTTGTTGGTTATTGACTATTTCTTCAG-TAACTGAATCGAAATATGAATTTGTATTGT
* * * **
32895956 TGACATATGTAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTTCTATCACTACTATGACAAA
65 TGACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCTATCACTACTACAACAAA
* * *
32896021 ATAACTTGTCTGCTTTAAAAGGTTCACAATTTATTGAAATAAATCTTTGGATTGTGATGATGTCG
130 ACAACTTGTCTGCTTTAAAAGATTCACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCG
** * * *
32896086 TGGAATGATATAATCCTATCAATGAAGATTAATTCACATGGAGAAACATATCTAAAGAATCA
195 TGGAAAAATATAATCCCATAAATGAAAATTAATTCACATGGAGAAACATATCTAAAGAATCA
32896148 GATCAGATCG
Statistics
Matches: 230, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
290 1 0.00
291 229 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (291 bp):
TCATTGATTTGTTGGTTATTGACTATTTCTTCAGTAACTGAATCGAAATATGAATTTGTATTGTT
GACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCTATCACTACTACAACAAAA
CAACTTGTCTGCTTTAAAAGATTCACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCGT
GGAAAAATATAATCCCATAAATGAAAATTAATTCACATGGAGAAACATATCTAAAGAATCAAATA
TCCTAAAAAATATCTAACATTTAAGATATAC
Found at i:32897451 original size:22 final size:22
Alignment explanation
Indices: 32897426--32897467 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32897416 ATATTTGAAT
32897426 TTTTATATTCAATAACAAATCA
1 TTTTATATTCAATAACAAATCA
* *
32897448 TTTTTTATTCAATAATAAAT
1 TTTTATATTCAATAACAAAT
32897468 GTATAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTTATATTCAATAACAAATCA
Found at i:32902686 original size:4 final size:4
Alignment explanation
Indices: 32902677--32902701 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
32902667 GTTGTTCTGT
32902677 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
32902702 ATGTTACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:32907875 original size:9 final size:9
Alignment explanation
Indices: 32907861--32907894 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
32907851 AAAATATTTC
32907861 ATAAAAAAA
1 ATAAAAAAA
32907870 ATAAAAAAA
1 ATAAAAAAA
* *
32907879 AGAAGAAAA
1 ATAAAAAAA
32907888 ATAAAAA
1 ATAAAAA
32907895 GGAGAGGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:32908922 original size:45 final size:45
Alignment explanation
Indices: 32908778--32909435 Score: 199
Period size: 44 Copynumber: 14.6 Consensus size: 45
32908768 CATCATGGCG
* * * * *
32908778 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * * **
32908822 AATCTTA-CCCCTCTGAAGTTGCAAT-GAGGCAGGTTAAA-ATTA-CA
1 AATCTTATCTCC-CTGAAGTTGCAGTGGA-ACAGACTAAAGA-TAGCA
* *
32908866 AGTCTTATCTCCCTGAAGTTGTAGTGGAACAGACTAAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * * ** *
32908911 AACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGATA-CA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * ** **
32908955 AGTCTTATCTCCCTGAAGTTGTA--GGAGTAGACTAAAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * * * * *
32908998 AATCTTATTTCCCTAAAGTCGCAGTGGAACAGATTGAAGCTATAAATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAG--AT--A--GCA
* * * * * * * *
32909049 GATCTTATCTCTCTGAAATTGTAGTAGAGCAGA-T---CATATCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * ** * *
32909090 AGTCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * ** * * *
32909135 AATCTTATTTCCCTGAAGTCGCAGCAGAACAGATTGAAGCTATA-AA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAG--ATAGCA
* * * * * *
32909181 TTACGGATCTTATCTCTCTGAAGTTGAAGTAGAGCAGA-T---CATATCA
1 --A---ATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * * *
32909227 AACCTTATCTCCCTGAAGTTGCAGTGGATCAGATTGAAGACCGGCTA-CA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACT-AA-A---GATAGCA
* * ** *
32909276 AATCATATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAAGCCA-CG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACT-AAAGATAGCA
* * * * ** * *
32909320 AACCTTATCTCTCTGAAGTTGCAATAGAACAGGTTGAAG-TAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* * * * ** * * *
32909364 AACCTTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGCTA-CT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
* *
32909408 AATCCTATCTTCCTGAAGTTGCAGTGGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGA
32909436 GCGGATTAAA
Statistics
Matches: 457, Mismatches: 117, Indels: 80
0.70 0.18 0.12
Matches are distributed among these distances:
41 54 0.12
42 14 0.03
43 25 0.05
44 172 0.38
45 94 0.21
46 1 0.00
47 6 0.01
48 4 0.01
49 33 0.07
50 4 0.01
51 50 0.11
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (45 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCA
Found at i:32909035 original size:87 final size:88
Alignment explanation
Indices: 32908862--32909036 Score: 235
Period size: 87 Copynumber: 2.0 Consensus size: 88
32908852 AGGTTAAAAT
*
32908862 TACAAGTCTTATCTCCCTGAAGTTGTAGTGGAACAGACTAAAGATAGCAAACCTTATCTCCCTGA
1 TACAAGTCTTATCTCCCTGAAGTTGTAG-GGAACAGACTAAAGATAGCAAACCTTATCTCCCTAA
* * *
32908927 AGTTGCAGTAGAGCAGGTTGAAGA
65 AGTCGCAGTAGAACAGATTGAAGA
** ** * *
32908951 TACAAGTCTTATCTCCCTGAAGTTGTA-GGAGTAGACTAAAGATAGTGAATCTTATTTCCCTAAA
1 TACAAGTCTTATCTCCCTGAAGTTGTAGGGAACAGACTAAAGATAGCAAACCTTATCTCCCTAAA
*
32909015 GTCGCAGTGGAACAGATTGAAG
66 GTCGCAGTAGAACAGATTGAAG
32909037 CTATAAATTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
87 48 0.64
89 27 0.36
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (88 bp):
TACAAGTCTTATCTCCCTGAAGTTGTAGGGAACAGACTAAAGATAGCAAACCTTATCTCCCTAAA
GTCGCAGTAGAACAGATTGAAGA
Found at i:32909139 original size:137 final size:136
Alignment explanation
Indices: 32908953--32909254 Score: 473
Period size: 137 Copynumber: 2.2 Consensus size: 136
32908943 GTTGAAGATA
*
32908953 CAAGTCTTATCTCCCTGAAGTT--GTAGGAGTAGACTAAAGATAGTGAATCTTATTTCCCTAAAG
1 CAAGTCTTATCTCCCTGAAGTTCAGT-GGAGTAGACTAAAGATAGCGAATCTTATTTCCCTAAAG
** *
32909016 TCGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAATTGTAGTAGAGCAG
65 TCGCAGCAGAACAGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAATTGAAGTAGAGCAG
32909081 ATCATAT
130 ATCATAT
* *
32909088 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
1 CAAGTCTTATCTCCCTGAAGTT-CAGTGGAGTAGACTAAAGATAGCGAATCTTATTTCCCTAAAG
* *
32909153 TCGCAGCAGAACAGATTGAAGCTATAAATTACGGATCTTATCTCTCTGAAGTTGAAGTAGAGCAG
65 TCGCAGCAGAACAGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAATTGAAGTAGAGCAG
32909218 ATCATAT
130 ATCATAT
**
32909225 CAAACCTTATCTCCCTGAAGTTGCAGTGGA
1 CAAGTCTTATCTCCCTGAAGTT-CAGTGGA
32909255 TCAGATTGAA
Statistics
Matches: 153, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
135 22 0.14
137 129 0.84
138 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (136 bp):
CAAGTCTTATCTCCCTGAAGTTCAGTGGAGTAGACTAAAGATAGCGAATCTTATTTCCCTAAAGT
CGCAGCAGAACAGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAATTGAAGTAGAGCAGA
TCATAT
Found at i:32909357 original size:93 final size:90
Alignment explanation
Indices: 32909191--32909358 Score: 219
Period size: 93 Copynumber: 1.8 Consensus size: 90
32909181 TTACGGATCT
* * * * * *
32909191 TATCTCTCTGAAGTTGAAGTAGAGCAGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGGAT
1 TATCTCCCTGAAGTTGAAGTAGAGCAGATCAAACCAAACCTTATCTCCCTGAAGTTGCAATAGAA
32909256 CAGATTGAAGACCGGCTACAAATCA
66 CAGATTGAAGACCGGCTACAAATCA
* * *
32909281 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCACGAACCTTATCTCTCTGAAGTTGCAATA
1 TATCTCCCTGAAGTTGAAGTAGAGCAGATCAAA-CCA--AACCTTATCTCCCTGAAGTTGCAATA
*
32909346 GAACAGGTTGAAG
63 GAACAGATTGAAG
32909359 TAACAAACCT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
90 29 0.45
91 2 0.03
93 34 0.52
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (90 bp):
TATCTCCCTGAAGTTGAAGTAGAGCAGATCAAACCAAACCTTATCTCCCTGAAGTTGCAATAGAA
CAGATTGAAGACCGGCTACAAATCA
Found at i:32910236 original size:5 final size:5
Alignment explanation
Indices: 32910226--32910260 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
32910216 TCTTTATTCT
32910226 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
32910261 AAGAATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:32911722 original size:130 final size:131
Alignment explanation
Indices: 32911467--32911736 Score: 443
Period size: 130 Copynumber: 2.1 Consensus size: 131
32911457 AAAAATCTTG
** * *
32911467 AAAATAAAGGCAATATTCCGTATTTAGAAATTTGAGAAGTTGTGCCCTAACTTATTGGGTTTCGA
1 AAAATAAAGAAAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
* * *
32911532 TTTTTCTCGCGTTGAACGTAAATAATCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
32911597 A
131 A
* *
32911598 TAAATAAAGAAAATATTCTGT-TTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
1 AAAATAAAGAAAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
32911662 TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
32911727 A
131 A
*
32911728 AAAACAAAG
1 AAAATAAAG
32911737 GTGAGCTTAT
Statistics
Matches: 128, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
130 111 0.87
131 17 0.13
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (131 bp):
AAAATAAAGAAAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
A
Found at i:32923251 original size:5 final size:5
Alignment explanation
Indices: 32923241--32923269 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
32923231 AAAATAGAAC
32923241 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
32923270 ATATAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAAAT
Found at i:32924393 original size:20 final size:19
Alignment explanation
Indices: 32924346--32924400 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
32924336 GAACTTGTCC
*
32924346 AAAAAAA-TTATACTTTTT
1 AAAAAAATTTATAATTTTT
*
32924364 AAAATTAATTTATATATTTTT
1 AAAA-AAATTTATA-ATTTTT
32924385 AAAAAAATTTA-AATTT
1 AAAAAAATTTATAATTT
32924401 ATGTTTACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 8 0.26
19 3 0.10
20 11 0.35
21 9 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
AAAAAAATTTATAATTTTT
Found at i:32926419 original size:134 final size:134
Alignment explanation
Indices: 32926157--32926419 Score: 411
Period size: 134 Copynumber: 2.0 Consensus size: 134
32926147 TGTCTTGAGT
* * *
32926157 GACAAATATTTCCGCAAGTTCTTCACAAGAAATTGCCATGACTCCGAGTTCTCTCCTTCAATGAT
1 GACAAATATCTCCGCAAGTTCTTCACAAAAAATTGCCATGACTCCGAGTTCTCTCCTTCAACGAT
* * * * *
32926222 AGAAAAGGCTATCGGTAGAATGTTTCGGTTCATGTCTTATGCAACCGTAATGAGGAGGATTTGCA
66 AGAAAAAGCTATCGGTAGAATATTCCGGTTCATGTCTTATGCAACCGCAATGAGGAGAATTTGCA
32926287 TACG
131 TACG
*
32926291 GACAACATATCTCCGCAAGTTCTTCACAAAAAATTGCCATGACTCTGAGTTCTCTCCTTCAACGA
1 GACAA-ATATCTCCGCAAGTTCTTCACAAAAAATTGCCATGACTCCGAGTTCTCTCCTTCAACGA
* *
32926356 TA-AAAAAGCTATTGGTAGAATATTCCGGTTCATGTCTTGTGCAACCGCAATGAGGAGAATTTGC
65 TAGAAAAAGCTATCGGTAGAATATTCCGGTTCATGTCTTATGCAACCGCAATGAGGAGAATTTGC
32926420 GTACATTTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
134 60 0.51
135 57 0.49
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.29
Consensus pattern (134 bp):
GACAAATATCTCCGCAAGTTCTTCACAAAAAATTGCCATGACTCCGAGTTCTCTCCTTCAACGAT
AGAAAAAGCTATCGGTAGAATATTCCGGTTCATGTCTTATGCAACCGCAATGAGGAGAATTTGCA
TACG
Found at i:32933610 original size:21 final size:21
Alignment explanation
Indices: 32933570--32933626 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
32933560 ATACACCAAT
*
32933570 AGAAGCTCG-AA-AGCTGAAC
1 AGAAGCTCGTAAGAGCTAAAC
*
32933589 AGGAGCTCGTAAGAGCTAAAC
1 AGAAGCTCGTAAGAGCTAAAC
*
32933610 AGAAACTCGTAAGAGCT
1 AGAAGCTCGTAAGAGCT
32933627 GATCTAGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.25
20 2 0.06
21 22 0.69
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.14
Consensus pattern (21 bp):
AGAAGCTCGTAAGAGCTAAAC
Found at i:32935379 original size:16 final size:17
Alignment explanation
Indices: 32935348--32935379 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32935338 CTAAAATATT
32935348 AATTAAATTAATTTTCC
1 AATTAAATTAATTTTCC
32935365 AATTAAATT-ATTTTC
1 AATTAAATTAATTTTC
32935380 TAACTCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAAATTAATTTTCC
Found at i:32938649 original size:14 final size:14
Alignment explanation
Indices: 32938630--32938675 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
32938620 CGGCCCAAAT
32938630 CAAAAATAAATAAA
1 CAAAAATAAATAAA
* *
32938644 CAAAAAAAAATATA
1 CAAAAATAAATAAA
32938658 -AAAAAT-AA-AAA
1 CAAAAATAAATAAA
32938669 CAAAAAT
1 CAAAAAT
32938676 TATTAAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 2 0.07
12 8 0.30
13 5 0.19
14 12 0.44
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (14 bp):
CAAAAATAAATAAA
Found at i:32938654 original size:25 final size:22
Alignment explanation
Indices: 32938626--32938674 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
32938616 TGCCCGGCCC
32938626 AAATCAAAAATAAATAAACAAAAAA
1 AAAT-AAAAA-AAATAAA-AAAAAA
* *
32938651 AAATATAAAAAATAAAAACAAA
1 AAATAAAAAAAATAAAAAAAAA
32938673 AA
1 AA
32938675 TTATTAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 7 0.32
23 7 0.32
24 4 0.18
25 4 0.18
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (22 bp):
AAATAAAAAAAATAAAAAAAAA
Found at i:32938683 original size:22 final size:23
Alignment explanation
Indices: 32938637--32938683 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
32938627 AATCAAAAAT
32938637 AAATAAACAAAAAAAAATATAAA
1 AAATAAACAAAAAAAAATATAAA
* * *
32938660 AAATAAA-AACAAAAATTATTAA
1 AAATAAACAAAAAAAAATATAAA
32938682 AA
1 AA
32938684 GTCCATCAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (23 bp):
AAATAAACAAAAAAAAATATAAA
Found at i:32939096 original size:13 final size:13
Alignment explanation
Indices: 32939078--32939102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32939068 GATTGTATTT
32939078 TTATTTTATTTTA
1 TTATTTTATTTTA
32939091 TTATTTTATTTT
1 TTATTTTATTTT
32939103 CGTTTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:32945181 original size:126 final size:126
Alignment explanation
Indices: 32944928--32945495 Score: 707
Period size: 126 Copynumber: 4.5 Consensus size: 126
32944918 GATAAAATCA
* * * * * * * * *
32944928 AAGCAGGATGATTTATTAGAAGGATTTTTGAAGTTGCGCCCACGTGTACATACTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAGT
* * * *
32944993 AGGT-CTTGAAAAAATAATTTCGACTTGACGTTTCTGAGAAAATAGTTTAAAAAATGCTTC
66 AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * * *
32945053 AAGCAGGATGCTTTATGAGAAGAATTTATGAAATCGCGCCCTCATGAACGTGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAGT
* * * * * *
32945118 TGGTCCTGGAAGAAATAATTTCGAGTTGACTTTTTTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * *
32945179 AAGTAGGATGCTTTAT-AAAAGGAATTTGTGAAGTCGCGCCCACGTGGACGTGCTTTTGCTACAG
1 AAGCAGGATGCTTTATGAGAA-GAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAG
* * *
32945243 TAGGTCCT-GAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGC
65 TAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTTC
* * **
32945305 AAGCAGCATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAG
* * * *
32945369 TAAGTCCTGG-AAAAATAATTTCGACTTGACGTTTCTGAGTAAATAGTAT-AAAATCACTTC
65 TAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* *
32945429 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATTGCGCCCACGTGGACGTGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAGT
32945494 AG
66 AG
32945496 CATGTTTAGG
Statistics
Matches: 380, Mismatches: 56, Indels: 15
0.84 0.12 0.03
Matches are distributed among these distances:
123 2 0.01
124 62 0.16
125 102 0.27
126 208 0.55
127 6 0.02
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (126 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAGT
AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:32945415 original size:251 final size:250
Alignment explanation
Indices: 32944928--32945495 Score: 766
Period size: 251 Copynumber: 2.3 Consensus size: 250
32944918 GATAAAATCA
* * * * *
32944928 AAGCAGGATGATTTATTAGAAGG-ATTTTTGAAGTTGCGCCCACGTGTACATACTTTTGCTACAG
1 AAGCAGGATGCTTTA-TAGAAGGAATTTGTGAAGTTGCGCCCACGTGGACGTGCTTTTGCTACAG
* * * *
32944992 TAGGTCTTGAAAAAATAATTTCGACTTGACGTTTCTGAGAAAATAGTTTAAAAAATGCTTCAAGC
65 TAGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTGCAAGC
* ** * **
32945057 AGGATGCTTTATGAGAAGAATTTATGAAATCGCGCCCTCATGAACGTGCTTTTGCTATAGTTGGT
130 AGCATGCTTTATGAGAAGAATTTATGAAATCGCGCCCTCATGAACGCACTTTTGCTACAGTAAGT
* * * * *
32945122 CCTGGAAGAAATAATTTCGAGTTGACTTTTTTGAGCAAATAGTTTAAAAAACGCTTC
195 CCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAAACACTTC
* * *
32945179 AAGTAGGATGCTTTATAAAAGGAATTTGTGAAGTCGCGCCCACGTGGACGTGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAGAAGGAATTTGTGAAGTTGCGCCCACGTGGACGTGCTTTTGCTACAGT
* * *
32945244 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGCAAGC
66 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGAAAATAGTATAAAA-AACGCTGCAAGC
* * *
32945309 AGCATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGTAAG
130 AGCATGCT-TTATGAGAAGAATTTATGAAATCGCGCCCTCATGAACGCACTTTTGCTACAGTAAG
* *
32945373 TCCTGGAA-AAATAATTTCGACTTGACGTTTCTGAGTAAATAGTATAAAATCACTTC
194 TCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAACACTTC
* *
32945429 TAGCAGGATGCTTTATGAGAA-GAATTTGTGAAATTGCGCCCACGTGGACGTGCTTTTGCTACAG
1 AAGCAGGATGCTTTAT-AGAAGGAATTTGTGAAGTTGCGCCCACGTGGACGTGCTTTTGCTACAG
32945493 TAG
65 TAG
32945496 CATGTTTAGG
Statistics
Matches: 277, Mismatches: 36, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
250 73 0.26
251 132 0.48
252 70 0.25
253 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (250 bp):
AAGCAGGATGCTTTATAGAAGGAATTTGTGAAGTTGCGCCCACGTGGACGTGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTGCAAGCA
GCATGCTTTATGAGAAGAATTTATGAAATCGCGCCCTCATGAACGCACTTTTGCTACAGTAAGTC
CTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAACACTTC
Found at i:32948710 original size:22 final size:22
Alignment explanation
Indices: 32948669--32949164 Score: 604
Period size: 22 Copynumber: 23.0 Consensus size: 22
32948659 TCAAATTATA
32948669 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32948690 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32948712 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
32948733 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32948754 TTTAGGTTAAGGGTTTATGGGTT
1 TTTAAGTTAAGGGTTTA-GGGTT
*
32948777 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
32948799 TTTAATTTAAAGGCTTAGGGGT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32948821 TTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32948843 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
32948864 TTTAAGTTAAGGGATTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32948886 TTTAAGTTAATGG---AGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
32948905 TTTAAGTTAAGGGGTTGGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
32948927 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
32948948 TTTAGGTTAAGAGTTTATGGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
32948970 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32948992 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
32949014 TTAAAGTTAAGGG-TTAGTGCT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32949035 TTTAAGTTAAGAGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
32949057 TTAAAGTTAATGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
32949078 TTTAGGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
32949100 TTTAAGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
32949122 TTTAGGTTAAGGATTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
32949144 TTTAA-TTCAAGGG-TTAGGGTT
1 TTTAAGTT-AAGGGTTTAGGGTT
32949165 AGGGTTTTTA
Statistics
Matches: 411, Mismatches: 51, Indels: 26
0.84 0.10 0.05
Matches are distributed among these distances:
19 17 0.04
21 137 0.33
22 234 0.57
23 23 0.06
ACGTcount: A:0.25, C:0.01, G:0.31, T:0.44
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:32948729 original size:43 final size:43
Alignment explanation
Indices: 32948669--32949164 Score: 633
Period size: 43 Copynumber: 11.5 Consensus size: 43
32948659 TCAAATTATA
*
32948669 TTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
*
32948712 TTAAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
32948754 TTTAGGTTAAGGGTTTATGGGTTTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTA-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
32948799 TTTAATTTAAAGGCTTAGGGGTTTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
32948843 TTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGGATTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
32948886 TTTAAGTTAATGG--AGGGTTTTTAAGTTAAGGGGTTGGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
32948927 TTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGAGTTTATGGG-T
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTA-GGGTT
*
32948970 TTTAAGTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
32949014 TTAAAGTTAAGGGTTAGTGCTTTTAAGTTAAGAGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
32949057 TTAAAGTTAATGGTTAGGGTTTTTAGGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
32949100 TTTAAGTTAAGGGTTTAGAGTTTTTAGGTTAAGGATTTATGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
32949144 TTTAA-TTCAAGGGTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTT
32949165 AGGGTTTTTA
Statistics
Matches: 393, Mismatches: 49, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
41 36 0.09
42 19 0.05
43 195 0.50
44 122 0.31
45 17 0.04
46 4 0.01
ACGTcount: A:0.25, C:0.01, G:0.31, T:0.44
Consensus pattern (43 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:32949766 original size:18 final size:18
Alignment explanation
Indices: 32949740--32949782 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32949730 GACTCGAAAA
* *
32949740 AGGAAACATATAAGGGGT
1 AGGAAACATAAAAGGGCT
*
32949758 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
32949776 AGGAAAC
1 AGGAAAC
32949783 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:32950558 original size:20 final size:20
Alignment explanation
Indices: 32950521--32950558 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32950511 TTTATTTTTA
*
32950521 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
32950541 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
32950559 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:32951235 original size:21 final size:21
Alignment explanation
Indices: 32951209--32951248 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
32951199 TCCGGATATT
32951209 GCAGGTAGTTCTCTACCAATG
1 GCAGGTAGTTCTCTACCAATG
32951230 GCAGGTAGTTCTCTACCAA
1 GCAGGTAGTTCTCTACCAA
32951249 CGGTGATGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (21 bp):
GCAGGTAGTTCTCTACCAATG
Found at i:32951582 original size:51 final size:51
Alignment explanation
Indices: 32951527--32951624 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
32951517 AATTATTTAA
32951527 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * * *
32951578 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
32951625 GAGGAAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.24, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:32951611 original size:22 final size:22
Alignment explanation
Indices: 32951586--32951652 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 22
32951576 ATAAATATGG
32951586 ATTTGAGAGAAATTTTGAAGGA
1 ATTTGAGAGAAATTTTGAAGGA
32951608 ATTTGAGAGCAAA--TTGAGAGGAA
1 ATTTGAGAG-AAATTTTGA-AGG-A
32951631 ATTT-AGAAGAAATTTTGAAGGA
1 ATTTGAG-AGAAATTTTGAAGGA
32951653 TTAGTTTGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
21 4 0.10
22 18 0.46
23 13 0.33
24 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.27, T:0.28
Consensus pattern (22 bp):
ATTTGAGAGAAATTTTGAAGGA
Found at i:32951622 original size:12 final size:11
Alignment explanation
Indices: 32951586--32951645 Score: 54
Period size: 11 Copynumber: 5.4 Consensus size: 11
32951576 ATAAATATGG
32951586 ATTTGAGAGAA
1 ATTTGAGAGAA
*
32951597 ATTTTGA-AGGA
1 A-TTTGAGAGAA
32951608 ATTTGAGAGCAA
1 ATTTGAGAG-AA
32951620 A-TTGAGAGGAA
1 ATTTGAGA-GAA
32951631 ATTT-AGAAGAA
1 ATTTGAG-AGAA
32951642 ATTT
1 ATTT
32951646 TGAAGGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
10 5 0.12
11 25 0.61
12 11 0.27
ACGTcount: A:0.43, C:0.02, G:0.25, T:0.30
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:32955124 original size:33 final size:33
Alignment explanation
Indices: 32955082--32955155 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
32955072 TGCGGAACTT
32955082 AAAATTAGAATGTCAGAACCATGTGTTGTTGTG
1 AAAATTAGAATGTCAGAACCATGTGTTGTTGTG
32955115 AAAATTAGAATGTCAGAACCATGTGTTGTTGTG
1 AAAATTAGAATGTCAGAACCATGTGTTGTTGTG
32955148 AATAATTA
1 AA-AATTA
32955156 TATATTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 35 0.88
34 5 0.12
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (33 bp):
AAAATTAGAATGTCAGAACCATGTGTTGTTGTG
Found at i:32956013 original size:41 final size:41
Alignment explanation
Indices: 32955885--32956013 Score: 95
Period size: 41 Copynumber: 3.1 Consensus size: 41
32955875 AATTCCCGAG
32955885 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACA
1 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACA
*** * ** ** *
32955926 AAT-A-CTTGGCTTTCTAAATTCAT-CGAA-AAATAACCACAATCCA
1 AATAAGCTTTTATTT-AAAATT--TGCGAATTTAT-TGCA-AA-ACA
32955969 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACA
1 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACA
32956010 AATA
1 AATA
32956014 CTTGGCTTTC
Statistics
Matches: 60, Mismatches: 18, Indels: 20
0.61 0.18 0.20
Matches are distributed among these distances:
39 6 0.10
40 8 0.13
41 15 0.25
42 6 0.10
43 11 0.18
44 8 0.13
45 6 0.10
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.35
Consensus pattern (41 bp):
AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACA
Found at i:32956026 original size:84 final size:84
Alignment explanation
Indices: 32955885--32956052 Score: 327
Period size: 84 Copynumber: 2.0 Consensus size: 84
32955875 AATTCCCGAG
32955885 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACAAATACTTGGCTTTCTAAATTCATC
1 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACAAATACTTGGCTTTCTAAATTCATC
32955950 GAAAAATAACCACAATCCA
66 GAAAAATAACCACAATCCA
32955969 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACAAATACTTGGCTTTCTAAATTCATC
1 AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACAAATACTTGGCTTTCTAAATTCATC
*
32956034 GAAAAATAACCGCAATCCA
66 GAAAAATAACCACAATCCA
32956053 GTAAGTTAGG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (84 bp):
AATAAGCTTTTATTTAAAATTTGCGAATTTATTGCAAAACAAATACTTGGCTTTCTAAATTCATC
GAAAAATAACCACAATCCA
Found at i:32956516 original size:3 final size:3
Alignment explanation
Indices: 32956508--32956550 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
32956498 CATGTATGTT
32956508 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32956551 ACAGTTAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32958318 original size:44 final size:44
Alignment explanation
Indices: 32958270--32959277 Score: 561
Period size: 44 Copynumber: 22.5 Consensus size: 44
32958260 ACCGATATAG
* * * *
32958270 GAAGACAGGACCTGCTACCTTTGATCAACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* ** * * * * ***
32958314 GAAGATAAGATCTATTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAT
*
32958359 GAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* ** * * * ***
32958403 GAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGC--TAT-CTTTGATCTACTTC-ACGCCAGTACAT
* * * * * * * * *
32958451 GAAAACAAAATCTG-TATATTCGATCCACTTCGCTACC-GATATAG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCAC-GCCAG-TACAT
* *
32958495 GAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* ** * * * * ***
32958539 GAAGATAAGATCTATTTTCTTTGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAT
* * *
32958584 GAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * * * ***
32958628 GAAGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAT
*
32958673 GAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* ** * * * ***
32958717 GAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGC--TAT-CTTTGATCTACTTC-ACGCCAGTACAT
* * * * * * * * *
32958765 GAAAACAAAATCTG-TATATTCGATCCACTTCGCTACC-GATATAG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCAC-GCCAG-TACAT
* *
32958809 GAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* ** * * * ***
32958853 GAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGC--TAT-CTTTGATCTACTTC-ACGCCAGTACAT
* * * * * * * * *
32958901 GAAAACAAAATCTG-TATATTCGATCCACTTCGCTACC-GATATAG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCAC-GCCAG-TACAT
* *
32958945 GAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * * * * *
32958989 GAAGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATAG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAT
* * * * *
32959034 GAAGGCAAGATCTGGTATCTCTAATCTACTTCATGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * * ***
32959078 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAT
* * *
32959123 GAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * * ** ***
32959167 GAAGACAAGATCTGTTTTCTCTGATCTGCTTCGTGCCCAGTATGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACG-CCAGTACAT
* * * *
32959212 GAAGGCAAGATTTGGTATCTCTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
*
32959256 GAAGACAAGATCTGTTATCTTT
1 GAAGACAAGATCTGCTATCTTT
32959278 CAACCTGCTC
Statistics
Matches: 712, Mismatches: 222, Indels: 60
0.72 0.22 0.06
Matches are distributed among these distances:
43 6 0.01
44 353 0.50
45 257 0.36
46 6 0.01
47 33 0.05
48 57 0.08
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
Found at i:32958345 original size:89 final size:89
Alignment explanation
Indices: 32958244--32958415 Score: 238
Period size: 89 Copynumber: 1.9 Consensus size: 89
32958234 AATCTGTATA
* *
32958244 TTCGATCCACTTCACTACC-GATATAGGAAGACAGGACCTGCTACCTTTGATCAACTTCACGCCA
1 TTCGATCCACTTCACCACCAG-TATAGGAAGACAAGACCTGCTACCTTTGATCAACTTCACGCCA
*
32958308 GTACATGAAGATAAGATCTATTTTC
65 GTACATGAAGACAAGATCTATTTTC
* * * * * * *
32958333 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAG
1 TTCGATCCACTTCACCACCAGTATAGGAAGACAAGACCTGCTACCTTTGATCAACTTCACGCCAG
32958398 TACATGAAGACAAGATCT
66 TACATGAAGACAAGATCT
32958416 GCTTTTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 71 0.99
90 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (89 bp):
TTCGATCCACTTCACCACCAGTATAGGAAGACAAGACCTGCTACCTTTGATCAACTTCACGCCAG
TACATGAAGACAAGATCTATTTTC
Found at i:32958461 original size:225 final size:223
Alignment explanation
Indices: 32958198--32959125 Score: 1220
Period size: 225 Copynumber: 4.1 Consensus size: 223
32958188 AGATCTTTAA
* *
32958198 TCTTCAATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGTATATTCGATCCACTTCACTACC
1 TCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCACTACC
* *
32958263 GATATAGGAAGACAGGACCTGCTACCTTTGATCAACTTCACGCCAGTACATGAAGATAAGATCTA
66 GATATAGGAAGACAGGACCTGCTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTA
* *
32958328 TTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCAC
131 TTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATCTGGTATCTCTGATCTACTTCAC
32958393 GCCAGTACATGAAGACAAGATCTGCTTTT
196 GCCAGTACATGAAGACAAGATCTGC-TTT
*
32958422 TCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTAC
1 T-CTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCACTAC
* *
32958487 CGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGATAAGATCT
65 CGATATAGGAAGACAGGACCTGCTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCT
* * * *
32958552 ATTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCA
130 ATTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATCTGGTATCTCTGATCTACTTCA
32958617 CGCCAGTACATGAAGACAAGATCTG-TTT
195 CGCCAGTACATGAAGACAAGATCTGCTTT
** * * * * * *
32958645 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCAC-GC
1 TCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCT-GTATATTCGATCCACTTCACTAC
* * * * * ** * * * *** *
32958709 C-AGTACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAA
65 CGA-TATAGGAAGACAGGACCTGC---TACCTTTGATCTACTTC-ACGCCAGTACATGAAGACAA
* * * * * * * * * *
32958773 AATCT-GTATATTCGATCCACTTCGCTACC-GATATAGGAAGACAGGACCTGCTATCTTTGATCT
125 GATCTATTTTCTTCGATCTACTTCGCCACCAG-TATAGGAAGACAAGATCTGGTATCTCTGATCT
32958836 ACTTCACGCCAGTACATGAAGACAAGATCTGCTTTT
189 ACTTCACGCCAGTACATGAAGACAAGATCTGC-TTT
*
32958872 TCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTAC
1 T-CTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCACTAC
*
32958937 CGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCT
65 CGATATAGGAAGACAGGACCTGCTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCT
* * * * *
32959002 GTTTTCTTTGATCTGCTTCGCCACCAGTATAGGAAGGCAAGATCTGGTATCTCTAATCTACTTCA
130 ATTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATCTGGTATCTCTGATCTACTTCA
*
32959067 TGCCAGTACATGAAGACAAGATCTGC-TT
195 CGCCAGTACATGAAGACAAGATCTGCTTT
**
32959095 TCTTTGATCTGCTTCGCCACCAGTATGGGAA
1 TCTTCAATCTGCTTCGCCACCAGTATGGGAA
32959126 GGCAAGATCT
Statistics
Matches: 600, Mismatches: 89, Indels: 32
0.83 0.12 0.04
Matches are distributed among these distances:
221 1 0.00
222 82 0.14
223 23 0.04
224 20 0.03
225 381 0.63
226 18 0.03
227 20 0.03
228 54 0.09
229 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (223 bp):
TCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCACTACC
GATATAGGAAGACAGGACCTGCTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTA
TTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATCTGGTATCTCTGATCTACTTCAC
GCCAGTACATGAAGACAAGATCTGCTTT
Found at i:32958499 original size:92 final size:91
Alignment explanation
Indices: 32958292--32958510 Score: 214
Period size: 92 Copynumber: 2.4 Consensus size: 91
32958282 TGCTACCTTT
* * * * *
32958292 GATCAACTTCACGCCAGTACATGAAGATAAGA--T-CTATTTTCTTCGATCTACTTCGCCACCAG
1 GATCCACTTCACACCAGTACAGGAAGACAAGACCTGCT-TTTTCTTCAATCTACTTCGCCACCAG
* * * *
32958354 TATGGGAAGACAAGATCTGGTATCTTT
65 TATGGGAAAACAAAATCTGGTATATTC
* * * * *
32958381 GATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAG
1 GATCCACTTCACACCAGTACAGGAAGACAAGACCTGCTTTTT-CTTCAATCTACTTCGCCACCAG
32958446 TATGGGAAAACAAAATCT-GTATATTC
65 TATGGGAAAACAAAATCTGGTATATTC
* * *
32958472 GATCCACTTCGCTACC-GATATAGGAAGACAGGACCTGCT
1 GATCCACTTCAC-ACCAG-TACAGGAAGACAAGACCTGCT
32958511 ATCTTTGATC
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
89 30 0.28
91 22 0.20
92 57 0.52
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (91 bp):
GATCCACTTCACACCAGTACAGGAAGACAAGACCTGCTTTTTCTTCAATCTACTTCGCCACCAGT
ATGGGAAAACAAAATCTGGTATATTC
Found at i:32958501 original size:136 final size:133
Alignment explanation
Indices: 32958333--32958586 Score: 375
Period size: 136 Copynumber: 1.9 Consensus size: 133
32958323 ATCTATTTTC
* * * *
32958333 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAG
1 TTCGATCCACTTCGCCACCAGTATAGGAAGACAAGACCTGCTATCTTTGATCTACTTCACGCCAG
*
32958398 TACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATC
66 TACATGAAGACAAGATCT--ATTTT-CTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATC
32958463 TGTATA
128 TGTATA
* *
32958469 TTCGATCCACTTCGCTACC-GATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCA
1 TTCGATCCACTTCGCCACCAG-TATAGGAAGACAAGACCTGCTATCTTTGATCTACTTCACGCCA
* **
32958533 GTACATGAAGATAAGATCTATTTTCTTTGATCTGCTTCGCCACCAGTATGGGAA
65 GTACATGAAGACAAGATCTATTTTCTTCAATCTGCTTCGCCACCAGTATGGGAA
32958587 GGCAAGATCT
Statistics
Matches: 107, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
133 28 0.26
134 4 0.04
135 1 0.01
136 74 0.69
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (133 bp):
TTCGATCCACTTCGCCACCAGTATAGGAAGACAAGACCTGCTATCTTTGATCTACTTCACGCCAG
TACATGAAGACAAGATCTATTTTCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGT
ATA
Found at i:32958629 original size:89 final size:89
Alignment explanation
Indices: 32958494--32959277 Score: 853
Period size: 89 Copynumber: 8.8 Consensus size: 89
32958484 TACCGATATA
* * * * * *
32958494 GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGATAAGATCTATTTTCT
1 GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
32958559 TTGATCTGCTTCGCCACCAGTATG
66 TTGATCTGCTTCGCCACCAGTATG
*
32958583 GGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
32958648 TTGATCTGCTTCGCCACCAGTATG
66 TTGATCTGCTTCGCCACCAGTATG
*
32958672 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
1 GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG--TTTT
**
32958737 CCTTCAATCTGCTTCGCCACCAGTATG
64 -CTTTGATCTGCTTCGCCACCAGTATG
* * * * * * * * * * * *
32958764 GGAAAACAAAATCT-GTATAT-TCGATCCACTTCGCTACC-GATATAGGAAGACAGGACCTGCTA
1 GGAAGACAAGATCTGGTATCTCT-GATCTACTTCAC-GCCAG-TACATGAAGACAAGATCTGTTT
* * * **
32958826 TCTTTGATCTACTTC-ACGCCAGTACA
63 TCTTTGATCTGCTTCGCCACCAGTATG
* * * * * * * * *** * *
32958852 TGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTG-T
1 GGAAGACAAGATCTGGTATCT-C-T-GATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGTT
* * * ** * *
32958916 ATATTCGATCCACTTCGCTACC-GATATA
62 TTCTTTGATCTGCTTCGCCACCAG-TATG
* * * *
32958944 GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
*
32959009 TTGATCTGCTTCGCCACCAGTATA
66 TTGATCTGCTTCGCCACCAGTATG
* * * *
32959033 GGAAGGCAAGATCTGGTATCTCTAATCTACTTCATGCCAGTACATGAAGACAAGATCTGCTTTCT
1 GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
32959098 TTGATCTGCTTCGCCACCAGTATG
66 TTGATCTGCTTCGCCACCAGTATG
*
32959122 GGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
* *
32959187 CTGATCTGCTTCGTGC-CCAGTATG
66 TTGATCTGCTTCG-CCACCAGTATG
* * *
32959211 GGAAGGCAAGATTTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTATCT
1 GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
32959276 TT
66 TT
32959278 CAACCTGCTC
Statistics
Matches: 588, Mismatches: 90, Indels: 34
0.83 0.13 0.05
Matches are distributed among these distances:
88 37 0.06
89 408 0.69
90 6 0.01
91 35 0.06
92 100 0.17
93 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (89 bp):
GGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
TTGATCTGCTTCGCCACCAGTATG
Found at i:32958648 original size:314 final size:314
Alignment explanation
Indices: 32958291--32959277 Score: 1238
Period size: 314 Copynumber: 3.1 Consensus size: 314
32958281 CTGCTACCTT
* * * * *
32958291 TGATCAACTTCACGCCAGTACATGAAGATAAGATCTATTTTCTTCGATCTACTTCGCCACCAGTA
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTATCTTTGATCTACTTCGCCACCAGTA
32958356 TGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTT
66 TGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTT
32958421 TTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTA
131 TTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTA
*
32958486 CCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGATAAGATC
196 CCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATC
32958551 TATTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTC
261 TATTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTC
* *
32958605 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTA
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTATCTTTGATCTACTTCGCCACCAGTA
32958670 TGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTT
66 TGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTT
32958735 TTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTA
131 TTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTA
32958800 CCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATC
196 CCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATC
* ** ** * *
32958865 TGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCT-GTATAT-
261 T--ATTTT-CTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTC
* * * * * * * * * *
32958920 TCGATCCACTTCGCTACC-GATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTC-ACGCCA
1 T-GATCTACTTCAC-GCCAG-TACATGAAGACAAGATCTGTTATCTTTGATCTACTTCGCCACCA
*** * * * * * * * *
32958983 GTACATGAAGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATAGGAAGGCAAGATCTG
63 GTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTG
* * * * *** *** * * * * * **
32959048 GTATCT-C-T-AATCTACTTC-ATGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGCTT
127 CTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTG-TATATTCGATCCACTT
* * * * * * *
32959109 CGCCACC-AGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGAC
191 CGCTACCGA-TATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
* * * *
32959173 AAGATCTGTTTTCTCTGATCTGCTTCGTGC-CCAGTATGGGAAGGCAAGATTTGGTATCTC
255 AAGATCTATTTTCTTTGATCTGCTTCG-CCACCAGTATGGGAAGGCAAGATCTGGTATCTC
32959233 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTATCTTT
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTATCTTT
32959278 CAACCTGCTC
Statistics
Matches: 582, Mismatches: 78, Indels: 29
0.84 0.11 0.04
Matches are distributed among these distances:
311 54 0.09
312 21 0.04
313 20 0.03
314 337 0.58
315 2 0.00
316 57 0.10
317 91 0.16
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (314 bp):
TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTATCTTTGATCTACTTCGCCACCAGTA
TGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTT
TTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTA
CCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATC
TATTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTC
Found at i:32958844 original size:136 final size:136
Alignment explanation
Indices: 32958672--32959036 Score: 655
Period size: 136 Copynumber: 2.7 Consensus size: 136
32958662 CACCAGTATG
* * *
32958672 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
1 GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
32958737 CCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTACC
66 CCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTACC
32958802 GATATA
131 GATATA
32958808 GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
1 GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
32958873 CCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTACC
66 CCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTACC
32958938 GATATA
131 GATATA
32958944 GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG--TTTT
1 GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
** *
32959007 -CTTTGATCTGCTTCGCCACCAGTATAGGAA
66 CCTTCAATCTGCTTCGCCACCAGTATGGGAA
32959037 GGCAAGATCT
Statistics
Matches: 223, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
133 27 0.12
134 4 0.02
136 192 0.86
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (136 bp):
GGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
CCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATATTCGATCCACTTCGCTACC
GATATA
Found at i:32958894 original size:450 final size:449
Alignment explanation
Indices: 32958333--32959184 Score: 1553
Period size: 450 Copynumber: 1.9 Consensus size: 449
32958323 ATCTATTTTC
* * * *
32958333 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAG
1 TTCGATCCACTTCGCCACCAGTATAGGAAGACAAGACCTGCTATCTTTGATCTACTTCACGCCAG
32958398 TACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATC
66 TACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATC
32958463 TGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCA
131 TGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCA
* *
32958528 CGCCAGTACATGAAGATAAGATCTATTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAG
196 CGCCAGTACATGAAGACAAGATCTATTTTCTTTGATCTGCTTCGCCACCAGTATAGGAAGGCAAG
* *
32958593 ATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTTGATCTGCT
261 ATCTGGTATCTCTAATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGCT
*
32958658 TCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
326 TCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGAC
32958723 AAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATA
391 AAGATCTG-TTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATA
* *
32958783 TTCGATCCACTTCGCTACC-GATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCACGCCA
1 TTCGATCCACTTCGCCACCAG-TATAGGAAGACAAGACCTGCTATCTTTGATCTACTTCACGCCA
32958847 GTACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAAT
65 GTACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAAT
32958912 CTGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTC
130 CTGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTC
*
32958977 ACGCCAGTACATGAAGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATAGGAAGGCAA
195 ACGCCAGTACATGAAGACAAGATCTATTTTCTTTGATCTGCTTCGCCACCAGTATAGGAAGGCAA
*
32959042 GATCTGGTATCTCTAATCTACTTCATGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGC
260 GATCTGGTATCTCTAATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGC
*
32959107 TTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGA
325 TTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGA
32959172 CAAGATCTGTTTT
390 CAAGATCTGTTTT
32959185 CTCTGATCTG
Statistics
Matches: 387, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
449 5 0.01
450 382 0.99
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (449 bp):
TTCGATCCACTTCGCCACCAGTATAGGAAGACAAGACCTGCTATCTTTGATCTACTTCACGCCAG
TACATGAAGACAAGATCTGCTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATC
TGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAGGACCTGCTATCTTTGATCTACTTCA
CGCCAGTACATGAAGACAAGATCTATTTTCTTTGATCTGCTTCGCCACCAGTATAGGAAGGCAAG
ATCTGGTATCTCTAATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGCT
TCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGAC
AAGATCTGTTTTTCCTTCAATCTGCTTCGCCACCAGTATGGGAAAACAAAATCTGTATA
Found at i:32962726 original size:22 final size:22
Alignment explanation
Indices: 32962701--32962743 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
32962691 TATTCAAACA
32962701 ATAACA-ATAAACTAGTAGCAAC
1 ATAACAGATAAA-TAGTAGCAAC
* *
32962723 ATAATAGTTAAATAGTAGCAA
1 ATAACAGATAAATAGTAGCAA
32962744 AATAGTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (22 bp):
ATAACAGATAAATAGTAGCAAC
Found at i:32962786 original size:22 final size:22
Alignment explanation
Indices: 32962742--32962807 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
32962732 AAATAGTAGC
*
32962742 AAAATAGTAA-AAAA-AA-AAG
1 AAAATAGTAAGAAAACAATAAA
32962761 AAAATACG-AAGAAAACAATAAA
1 AAAATA-GTAAGAAAACAATAAA
*
32962783 AAAATAGTAAGAAAGCAATAAA
1 AAAATAGTAAGAAAACAATAAA
32962805 AAA
1 AAA
32962808 TAACAGTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.20
20 5 0.12
21 3 0.08
22 24 0.60
ACGTcount: A:0.74, C:0.05, G:0.11, T:0.11
Consensus pattern (22 bp):
AAAATAGTAAGAAAACAATAAA
Found at i:32965004 original size:4 final size:4
Alignment explanation
Indices: 32964995--32965031 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
32964985 TTTACTTCAG
32964995 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
32965032 CTGTGATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:32966103 original size:22 final size:22
Alignment explanation
Indices: 32966061--32966103 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
32966051 TTTTTAAAAA
*
32966061 TTTTAAAGATATTTTTATATAT
1 TTTTAAAGATATTTTAATATAT
*
32966083 TTTTAATGAT-TTTTAAGTATA
1 TTTTAAAGATATTTTAA-TATA
32966104 AAAATAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (22 bp):
TTTTAAAGATATTTTAATATAT
Found at i:32967915 original size:43 final size:43
Alignment explanation
Indices: 32967801--32967905 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
32967791 CCACAAACGT
* * * * * *
32967801 TATAGAACATAACCTTTCGCGGCACTTTTATCACAAGCGTCGC
1 TATAGAACATGACCTTTAGCGGCACTTTTACCACAAACGCCAC
* *
32967844 TAAAGAACATGACTTTTAGCGGCACTTTTACCACAAACGCCAC
1 TATAGAACATGACCTTTAGCGGCACTTTTACCACAAACGCCAC
32967887 TATAGAACATGACCTTTAG
1 TATAGAACATGACCTTTAG
32967906 TGGTGCTTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
TATAGAACATGACCTTTAGCGGCACTTTTACCACAAACGCCAC
Found at i:32968353 original size:66 final size:66
Alignment explanation
Indices: 32968247--32968384 Score: 179
Period size: 66 Copynumber: 2.1 Consensus size: 66
32968237 TCATATTCTG
* * * **
32968247 AAGTTGTAGCTAGAGTTCGTCATATTTTCTGTTTGCCTCTGTTTCCCTCGCTGCTGCCTCCGCTT
1 AAGTTGTAACTAGAGTTCGTCATATTTTCTGTTAGCCTCTGCTTCCCTCAATGCTGCCTCCGCTT
32968312 T
66 T
* * * *
32968313 AAGTTGTAACTGGAGTTCTTCATATTTTCT-TTGAGCCTCTGCTTCTCTCAATGCTGCCTTCGCT
1 AAGTTGTAACTAGAGTTCGTCATATTTTCTGTT-AGCCTCTGCTTCCCTCAATGCTGCCTCCGCT
32968377 TT
65 TT
32968379 AAGTTG
1 AAGTTG
32968385 AGCAAGTTGC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 2 0.03
66 60 0.97
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.43
Consensus pattern (66 bp):
AAGTTGTAACTAGAGTTCGTCATATTTTCTGTTAGCCTCTGCTTCCCTCAATGCTGCCTCCGCTT
T
Found at i:32976833 original size:9 final size:9
Alignment explanation
Indices: 32976819--32976844 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32976809 TGATATATAT
32976819 TTATGTAAG
1 TTATGTAAG
32976828 TTATGTAAG
1 TTATGTAAG
32976837 TTATGTAA
1 TTATGTAA
32976845 TTCATTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:32977400 original size:25 final size:25
Alignment explanation
Indices: 32977372--32977419 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
32977362 GGACAAGATT
32977372 TTGTTAAATGAAATAATAAAAATAA
1 TTGTTAAATGAAATAATAAAAATAA
*
32977397 TTGTTAACTGAAATAATAAAAAT
1 TTGTTAAATGAAATAATAAAAAT
32977420 TGAGCTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.33
Consensus pattern (25 bp):
TTGTTAAATGAAATAATAAAAATAA
Found at i:32979665 original size:19 final size:20
Alignment explanation
Indices: 32979637--32979691 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
32979627 CAGTTTTAAA
*
32979637 TAAATAATATTTGAAA-ATT
1 TAAATAATATTTGAAAGAAT
* *
32979656 TAAGTAATATTTAAAAGAAT
1 TAAATAATATTTGAAAGAAT
*
32979676 TAAATAAAATTTGAAA
1 TAAATAATATTTGAAA
32979692 TTTTTGTGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.36
Consensus pattern (20 bp):
TAAATAATATTTGAAAGAAT
Found at i:32980469 original size:58 final size:58
Alignment explanation
Indices: 32980379--32980496 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
32980369 TGCTTGACCT
*
32980379 TTTTAATGAGAAATTTTTATATTGAATTATTATATCTTTCATATCAGTTTTAAAAGAA
1 TTTTAATGAGAAATTTTTATATTGAATAATTATATCTTTCATATCAGTTTTAAAAGAA
32980437 TTTTAATGAGAAATTTTTATATTGAATAATTATATCTTTCATATCAGTTTTAAAAGAA
1 TTTTAATGAGAAATTTTTATATTGAATAATTATATCTTTCATATCAGTTTTAAAAGAA
32980495 TT
1 TT
32980497 AGATAAAATT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.48
Consensus pattern (58 bp):
TTTTAATGAGAAATTTTTATATTGAATAATTATATCTTTCATATCAGTTTTAAAAGAA
Found at i:32981208 original size:41 final size:41
Alignment explanation
Indices: 32981163--32981288 Score: 164
Period size: 41 Copynumber: 3.1 Consensus size: 41
32981153 TTTTTTTGTT
* *
32981163 ACCTTTTGCGGCGGTTTTCTCATAAACGCCGCTATTGCTTG
1 ACCTTTTGCGGCGTTTTTCTCATAAACGCCGCTACTGCTTG
* * *
32981204 ACCTTTTGTGG-GTTTTTCGCATAAACGTCGCTACTGCTTG
1 ACCTTTTGCGGCGTTTTTCTCATAAACGCCGCTACTGCTTG
* * * *
32981244 ACCTTTTGCGACATTTTTCTCATAAAAGCCGCTACTGCTTT
1 ACCTTTTGCGGCGTTTTTCTCATAAACGCCGCTACTGCTTG
32981285 ACCT
1 ACCT
32981289 ATTGTGACAT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 34 0.47
41 38 0.53
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.38
Consensus pattern (41 bp):
ACCTTTTGCGGCGTTTTTCTCATAAACGCCGCTACTGCTTG
Found at i:32981298 original size:41 final size:41
Alignment explanation
Indices: 32981177--32981302 Score: 164
Period size: 41 Copynumber: 3.1 Consensus size: 41
32981167 TTTGCGGCGG
* **
32981177 TTTTCTCATAAACGCCGCTATTGCTTGACCTTTTGTG-GGT
1 TTTTCTCATAAACGCCGCTACTGCTTGACCTTTTGTGACAT
* * *
32981217 TTTTCGCATAAACGTCGCTACTGCTTGACCTTTTGCGACAT
1 TTTTCTCATAAACGCCGCTACTGCTTGACCTTTTGTGACAT
* * *
32981258 TTTTCTCATAAAAGCCGCTACTGCTTTACCTATTGTGACAT
1 TTTTCTCATAAACGCCGCTACTGCTTGACCTTTTGTGACAT
32981299 TTTT
1 TTTT
32981303 TTGTTAGCAC
Statistics
Matches: 73, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 33 0.45
41 40 0.55
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.41
Consensus pattern (41 bp):
TTTTCTCATAAACGCCGCTACTGCTTGACCTTTTGTGACAT
Found at i:32983136 original size:10 final size:10
Alignment explanation
Indices: 32983121--32983177 Score: 62
Period size: 10 Copynumber: 5.7 Consensus size: 10
32983111 GTTAACATCC
32983121 ATTAATTTTA
1 ATTAATTTTA
* *
32983131 AGTAATTTTT
1 ATTAATTTTA
*
32983141 ATTAAGTTTA
1 ATTAATTTTA
*
32983151 ATTAATTTTG
1 ATTAATTTTA
32983161 ATTAA-TTTA
1 ATTAATTTTA
32983170 AGTTAATT
1 A-TTAATT
32983178 AGGTGATTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
9 4 0.11
10 32 0.86
11 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (10 bp):
ATTAATTTTA
Found at i:32983150 original size:20 final size:19
Alignment explanation
Indices: 32983121--32983177 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
32983111 GTTAACATCC
*
32983121 ATTAATTTTAAGTAATTTTT
1 ATTAA-TTTAAGTAATTTTG
*
32983141 ATTAAGTTTAATTAATTTTG
1 ATTAA-TTTAAGTAATTTTG
32983161 ATTAATTTAAGTTAATT
1 ATTAATTTAAG-TAATT
32983178 AGGTGATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.16
20 27 0.84
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTAATTTAAGTAATTTTG
Found at i:32983649 original size:20 final size:21
Alignment explanation
Indices: 32983624--32983668 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
32983614 TGAAATTGGT
32983624 TTTAAAACCAAAGCTCAAAA-
1 TTTAAAACCAAAGCTCAAAAC
*
32983644 TTTAAAACCAAAGCTTAAAAC
1 TTTAAAACCAAAGCTCAAAAC
32983665 TTTA
1 TTTA
32983669 GGGGTATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (21 bp):
TTTAAAACCAAAGCTCAAAAC
Found at i:32984029 original size:43 final size:43
Alignment explanation
Indices: 32983965--32984049 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
32983955 GTGAGAGTTG
* *
32983965 GACTAAATTGTAAAGAGATGTTTATATGTGTTAAAAGGTGCTC
1 GACTAAATTGTAAAGAAATGTTTATATGTGTTAAAAAGTGCTC
*
32984008 GACTAAATTGTAAAGAAATGTTTATATGTTTTAAAAAGTGCT
1 GACTAAATTGTAAAGAAATGTTTATATGTGTTAAAAAGTGCT
32984050 TGGGTGAACT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (43 bp):
GACTAAATTGTAAAGAAATGTTTATATGTGTTAAAAAGTGCTC
Found at i:32984405 original size:31 final size:31
Alignment explanation
Indices: 32984362--32984423 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
32984352 AGTTCAACAG
*
32984362 GCGATGTGGTTAATGTAAAATGAAAAATTGA
1 GCGAAGTGGTTAATGTAAAATGAAAAATTGA
32984393 GCGAAGTGGTTAATGTAAAATGAAAAATTGA
1 GCGAAGTGGTTAATGTAAAATGAAAAATTGA
32984424 AATGACATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.27
Consensus pattern (31 bp):
GCGAAGTGGTTAATGTAAAATGAAAAATTGA
Found at i:32986232 original size:25 final size:25
Alignment explanation
Indices: 32986203--32986254 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
32986193 AGCATTTAAA
*
32986203 GTTATTTTTATTAGTTTTTGCATTG
1 GTTATTTTTATTAGTTTTGGCATTG
32986228 GTTATTTTTATTAGTTTTGGCATTG
1 GTTATTTTTATTAGTTTTGGCATTG
32986253 GT
1 GT
32986255 GTTAGGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.15, C:0.04, G:0.19, T:0.62
Consensus pattern (25 bp):
GTTATTTTTATTAGTTTTGGCATTG
Found at i:32990713 original size:20 final size:20
Alignment explanation
Indices: 32990679--32990720 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
32990669 AACTATTTAA
** *
32990679 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
32990699 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
32990719 AT
1 AT
32990721 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:32990905 original size:20 final size:21
Alignment explanation
Indices: 32990868--32990906 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32990858 TTTCCTTCCT
* *
32990868 TTATTTTTTAATATTATTAGA
1 TTATTTTATAATAGTATTAGA
32990889 TTATTTTATAA-AGTATTA
1 TTATTTTATAATAGTATTA
32990907 CTGCAGAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (21 bp):
TTATTTTATAATAGTATTAGA
Found at i:32995440 original size:3 final size:3
Alignment explanation
Indices: 32995432--32995468 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
32995422 TTATAGAATG
32995432 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32995469 AACTCTCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:32995951 original size:16 final size:16
Alignment explanation
Indices: 32995930--32995962 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
32995920 CGCTGTATTG
32995930 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
32995946 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
32995962 G
1 G
32995963 TATTCTTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.33, T:0.18
Consensus pattern (16 bp):
GAATAGAGGCGTAATA
Found at i:32996230 original size:22 final size:21
Alignment explanation
Indices: 32996205--32996256 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
32996195 TAGATATTCT
*
32996205 TAATATTAA-ATTACTAAAATCA
1 TAATATTAATACTA-TAAAAT-A
32996227 TAATATATAATACTATAAAATA
1 TAATAT-TAATACTATAAAATA
32996249 TAAT-TTAA
1 TAATATTAA
32996257 CATAATTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 1 0.04
22 11 0.41
23 9 0.33
24 3 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
TAATATTAATACTATAAAATA
Found at i:32996295 original size:18 final size:18
Alignment explanation
Indices: 32996272--32996306 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
32996262 TTATTATTAA
32996272 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
32996290 ATATAATTTAATAAAAA
1 ATATAATTTAATAAAAA
32996307 GTTTGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:33002214 original size:24 final size:24
Alignment explanation
Indices: 33002187--33002256 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
33002177 CATTTTAACT
*
33002187 TAATCGAACATGTTCATGAACATA
1 TAATTGAACATGTTCATGAACATA
*
33002211 TAATTAAATC-TGTTCATGAACATA
1 TAATTGAA-CATGTTCATGAACATA
*
33002235 TAATTGAATATGTTCATGAACA
1 TAATTGAACATGTTCATGAACA
33002257 ATATTAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
24 39 0.98
25 1 0.03
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.34
Consensus pattern (24 bp):
TAATTGAACATGTTCATGAACATA
Found at i:33003074 original size:7 final size:7
Alignment explanation
Indices: 33003062--33003104 Score: 79
Period size: 7 Copynumber: 6.3 Consensus size: 7
33003052 GAATTTATTT
33003062 ATTTTAA
1 ATTTTAA
33003069 ATTTTAA
1 ATTTTAA
33003076 ATTTTAA
1 ATTTTAA
33003083 ATTTTAA
1 ATTTTAA
33003090 ATTTTAA
1 ATTTTAA
33003097 A-TTTAA
1 ATTTTAA
33003103 AT
1 AT
33003105 AAATTAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 6 0.17
7 29 0.83
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATTTTAA
Found at i:33003239 original size:33 final size:33
Alignment explanation
Indices: 33003198--33003265 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
33003188 AATTTACATT
*
33003198 TGAAAATTAAAAATTTATTTAATTTAAATTGAA
1 TGAAAATTAAAAAATTATTTAATTTAAATTGAA
33003231 TGAAAATTAAAAAATTATTTAATTTAAATTGAA
1 TGAAAATTAAAAAATTATTTAATTTAAATTGAA
33003264 TG
1 TG
33003266 GATATATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (33 bp):
TGAAAATTAAAAAATTATTTAATTTAAATTGAA
Found at i:33007610 original size:42 final size:42
Alignment explanation
Indices: 33007564--33007645 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
33007554 GAAACTTATT
* *
33007564 AGAGCTGAACGGAAACCCAT-AAGGGTTAAACTGAAGCTCAAA
1 AGAGCTAAACGGAAA-CCATAAAGGGTTAAACTGAAACTCAAA
* *
33007606 AGAGCTAAACTGAAACCTTAAAGGGTTAAACTGAAACTCA
1 AGAGCTAAACGGAAACCATAAAGGGTTAAACTGAAACTCA
33007646 TATGAGTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (42 bp):
AGAGCTAAACGGAAACCATAAAGGGTTAAACTGAAACTCAAA
Found at i:33007616 original size:21 final size:21
Alignment explanation
Indices: 33007590--33007687 Score: 76
Period size: 21 Copynumber: 4.8 Consensus size: 21
33007580 CCATAAGGGT
*
33007590 TAAACTGAAGCTCAAAAGAGC
1 TAAACTGAAACTCAAAAGAGC
* * *
33007611 TAAACTGAAAC-CTTAAAGGGT
1 TAAACTGAAACTC-AAAAGAGC
* *
33007632 TAAACTGAAACTCATATGAG-
1 TAAACTGAAACTCAAAAGAGC
* * * *
33007652 TTAACTGAAGCTCATAAGAAC
1 TAAACTGAAACTCAAAAGAGC
33007673 TAAACTGAAAC-CAAA
1 TAAACTGAAACTCAAA
33007688 CATGGAAGTT
Statistics
Matches: 59, Mismatches: 15, Indels: 7
0.73 0.19 0.09
Matches are distributed among these distances:
20 20 0.34
21 38 0.64
22 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.20
Consensus pattern (21 bp):
TAAACTGAAACTCAAAAGAGC
Found at i:33008667 original size:83 final size:84
Alignment explanation
Indices: 33008528--33008700 Score: 269
Period size: 83 Copynumber: 2.1 Consensus size: 84
33008518 TCTATGGTGT
33008528 TTTTGGCTGAAGATTGATGAAGAAATGTCTAGATTTTCAATTTAGTCATGGTTTTAA-ATTTTAC
1 TTTTGGCTGAAGATTGATGAAGAAATGTCTAGATTTTCAATTTAGTCATGGTTTTAATATTTTAC
*
33008592 CTTAATT-CCTAAATGACTA
66 CTTAATTCCCT-AATGACCA
* * * *
33008611 TTTTGGCTGAATATTGATGAAGAAATGTCTATATTTTCAATTTAGTCATTGTTTTAATTTTTTTA
1 TTTTGGCTGAAGATTGATGAAGAAATGTCTAGATTTTCAATTTAGTCATGGTTTTAA-TATTTTA
33008676 CCTTAATTCCCTAATGACCA
65 CCTTAATTCCCTAATGACCA
33008696 TTTTG
1 TTTTG
33008701 CCTCTAATTT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
83 54 0.66
85 25 0.30
86 3 0.04
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.46
Consensus pattern (84 bp):
TTTTGGCTGAAGATTGATGAAGAAATGTCTAGATTTTCAATTTAGTCATGGTTTTAATATTTTAC
CTTAATTCCCTAATGACCA
Found at i:33019985 original size:18 final size:18
Alignment explanation
Indices: 33019943--33019987 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 18
33019933 TTCACTAATT
*
33019943 AATTTAAAT-ATATTTTA
1 AATTTAAATAATATTGTA
*
33019960 AA-AT-AATAATATTGTA
1 AATTTAAATAATATTGTA
33019976 AATTTAAATAAT
1 AATTTAAATAAT
33019988 TTGATTAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
15 3 0.14
16 10 0.45
17 3 0.14
18 6 0.27
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATTTAAATAATATTGTA
Found at i:33026085 original size:13 final size:13
Alignment explanation
Indices: 33026067--33026093 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33026057 CTTTACACTT
33026067 TGTCCCGTGACAC
1 TGTCCCGTGACAC
33026080 TGTCCCGTGACAC
1 TGTCCCGTGACAC
33026093 T
1 T
33026094 AGGATGTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.22, T:0.26
Consensus pattern (13 bp):
TGTCCCGTGACAC
Found at i:33027578 original size:26 final size:24
Alignment explanation
Indices: 33027531--33027579 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
33027521 ATTTACTTTT
*
33027531 ATTTTTAAAAATCTATTAATAAAA
1 ATTTTTAAAAATCAATTAATAAAA
*
33027555 ATTTATTAAAAATACAATTCATAAA
1 ATTT-TTAAAAAT-CAATTAATAAA
33027580 TTAAAAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 8 0.38
26 9 0.43
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (24 bp):
ATTTTTAAAAATCAATTAATAAAA
Found at i:33027734 original size:28 final size:30
Alignment explanation
Indices: 33027703--33027768 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
33027693 CAAAATATAT
*
33027703 AAAAAT-TAAT-GTAGTAAATTTTGATAAA
1 AAAAATATAATAGTAGTAAATTTTGAAAAA
**
33027731 AAAAATACTCCTAGTAGTAAATTTTGAAAAA
1 AAAAATA-TAATAGTAGTAAATTTTGAAAAA
33027762 AAAAATA
1 AAAAATA
33027769 CTGCTTCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 6 0.19
30 2 0.06
31 24 0.75
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (30 bp):
AAAAATATAATAGTAGTAAATTTTGAAAAA
Found at i:33036331 original size:47 final size:47
Alignment explanation
Indices: 33036280--33036369 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
33036270 TATATTTAAT
*
33036280 CCAACAAGATTTAGATTCTCTTTCGGTGAGGTCACATCGGAAGTAAG
1 CCAACAAGATTTAGATTCTCTTTCGGCGAGGTCACATCGGAAGTAAG
* *
33036327 CCAACACGATTTAGATTCTCTTTCGGCGAGGTCACATCTGAAG
1 CCAACAAGATTTAGATTCTCTTTCGGCGAGGTCACATCGGAAG
33036370 AGATTAGGTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
CCAACAAGATTTAGATTCTCTTTCGGCGAGGTCACATCGGAAGTAAG
Found at i:33037094 original size:53 final size:53
Alignment explanation
Indices: 33037007--33037109 Score: 179
Period size: 53 Copynumber: 1.9 Consensus size: 53
33036997 TCAACATAGT
* * *
33037007 ATTGTGAAAGTAGTGAATGAGAATACCTGGAAGCCTATTAAATTTTCCAAGTA
1 ATTGTGAAAGTAGTGAATGAGAATACATGAAAGCCTATTAAATTTGCCAAGTA
33037060 ATTGTGAAAGTAGTGAATGAGAATACATGAAAGCCTATTAAATTTGCCAA
1 ATTGTGAAAGTAGTGAATGAGAATACATGAAAGCCTATTAAATTTGCCAA
33037110 TGACGGTTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (53 bp):
ATTGTGAAAGTAGTGAATGAGAATACATGAAAGCCTATTAAATTTGCCAAGTA
Found at i:33039161 original size:16 final size:15
Alignment explanation
Indices: 33039131--33039171 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
33039121 TTATTTATTA
33039131 AATTAA-TTTAAATT
1 AATTAATTTTAAATT
33039145 AATTAATTTTCAAATT
1 AATTAATTTT-AAATT
*
33039161 AAATAATTTTA
1 AATTAATTTTA
33039172 TAAACACAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 6 0.25
15 4 0.17
16 14 0.58
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
AATTAATTTTAAATT
Found at i:33043696 original size:10 final size:10
Alignment explanation
Indices: 33043681--33043710 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
33043671 GCGAGGTAAG
33043681 GGTTTTGTTA
1 GGTTTTGTTA
33043691 GGTTTTGTTA
1 GGTTTTGTTA
33043701 GGTTTT-TTA
1 GGTTTTGTTA
33043710 G
1 G
33043711 TCGAGTTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.10, C:0.00, G:0.30, T:0.60
Consensus pattern (10 bp):
GGTTTTGTTA
Found at i:33048191 original size:17 final size:17
Alignment explanation
Indices: 33048171--33048212 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
33048161 ATTATTATGC
*
33048171 ATGAATTGTTACTTTAT
1 ATGAACTGTTACTTTAT
*
33048188 ATGAACTGTTATTTTAT
1 ATGAACTGTTACTTTAT
*
33048205 ACGAACTG
1 ATGAACTG
33048213 CCTATTCTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (17 bp):
ATGAACTGTTACTTTAT
Found at i:33051403 original size:19 final size:20
Alignment explanation
Indices: 33051379--33051418 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
33051369 ATTGTTGAAA
*
33051379 TTATGAGATTTTTG-AAGTT
1 TTATGAGAGTTTTGTAAGTT
*
33051398 TTATGATAGTTTTGTAAGTT
1 TTATGAGAGTTTTGTAAGTT
33051418 T
1 T
33051419 GATAGCTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (20 bp):
TTATGAGAGTTTTGTAAGTT
Found at i:33053218 original size:55 final size:55
Alignment explanation
Indices: 33053134--33053240 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
33053124 TCATGTGACC
* *
33053134 TTATTTAGAATACAGACACGGCCTAGCACAC-GGTCTAAGACACGACCGTGTGGCT
1 TTATTTAGAATACACACACGGCCGAGCACACAGG-CTAAGACACGACCGTGTGGCT
* * * *
33053189 TTATTTTGAATACTCACACGGGCGAGCACACAGGCTGAGACACGACCGTGTG
1 TTATTTAGAATACACACACGGCCGAGCACACAGGCTAAGACACGACCGTGTG
33053241 ACCCGTATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 43 0.96
56 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.21
Consensus pattern (55 bp):
TTATTTAGAATACACACACGGCCGAGCACACAGGCTAAGACACGACCGTGTGGCT
Found at i:33065110 original size:37 final size:37
Alignment explanation
Indices: 33065066--33065165 Score: 155
Period size: 37 Copynumber: 2.7 Consensus size: 37
33065056 ATCCAATCAA
** *
33065066 AACACGCCAAACACTCATAAGAGCTAATCCAACCGAT
1 AACACGCCAAATGCTCATAAGAGCTAATCCAAACGAT
33065103 AACACGCCAAATGCTCATAAGAGCTAATCCAAACGAT
1 AACACGCCAAATGCTCATAAGAGCTAATCCAAACGAT
* *
33065140 AACAAGTCAAATGCTCATAAGAGCTA
1 AACACGCCAAATGCTCATAAGAGCTA
33065166 TACATCCACC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.44, C:0.27, G:0.13, T:0.16
Consensus pattern (37 bp):
AACACGCCAAATGCTCATAAGAGCTAATCCAAACGAT
Found at i:33066552 original size:9 final size:9
Alignment explanation
Indices: 33066520--33066552 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
33066510 TCAAGTATGT
33066520 TTCATTTTC
1 TTCATTTTC
33066529 TTC-TTTTC
1 TTCATTTTC
33066537 ATTCATTTTC
1 -TTCATTTTC
33066547 TTCATT
1 TTCATT
33066553 GCTCCAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 5 0.23
9 12 0.55
10 5 0.23
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (9 bp):
TTCATTTTC
Found at i:33069617 original size:113 final size:113
Alignment explanation
Indices: 33069382--33070056 Score: 937
Period size: 113 Copynumber: 5.9 Consensus size: 113
33069372 AAAATAAGCA
* * *
33069382 TTAGCGGC-ATTTATTTGAAAGCGCCGCAAAAAGCCTAAGCCAAAC-GCTACCGTTTTCTGAGTT
1 TTAGCGGCGGTTT-TTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGC-ACCGTTTTCTGAGTT
* * *
33069445 TTTGGTGGTCTTTAGCGGCGTTTCTATAAAGCGCCGCTAATTCTCAAGTCT
64 TTTGG-GGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTCT
*
33069496 TTAGCGGCGGTTTTTTAAAAGCGCCGCAAAAAGCCTAAACCCAACGGCACCGTTTTCTGAGTTTT
1 TTAGCGGCGGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
* * * *
33069561 TGGGGTCTTTAGTGGCGTTTCTGTAATGCGCCGCTACTGCTCAAGTCT
66 TGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTCT
* * * *
33069609 TTAGCGGCGTTTTTTTAAAAGCGCTGCAAAAAGCCTAAACCCAACGGCACCATTTTCTGAGTTTT
1 TTAGCGGCGGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
* * * *
33069674 TGAGGTCTTTCA-CGGCGTTTCTGTTATGCGCCGCTAATTCTCAGGTCTT
66 TGGGGTCTTT-AGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTC-T
* * * * * *
33069723 TTACCGG-TGTTTTGTTAAAAGCGCCGCAAAAAGCCTAAGCCAAACGGTACCATTTTTTGAGTTT
1 TTAGCGGCGGTTTT-TTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTT
* * * *
33069787 TTGGGGTCTTTAGCGGCATTTCTGAAAAGCGCTGCTAATGCTCAGGTGT
65 TTGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTCT
* * *
33069836 TTAGCAGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGCTTT
1 TTAGCGGCGGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
33069901 TGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTCT
66 TGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTCT
33069949 TTAGCGGC-GTTTTTCTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTT
1 TTAGCGGCGGTTTTT-TAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTT
* *
33070013 TTTGGGTCTTTAGCGGCGTTTCTGAATAAGCGCCGCTAATGCTC
65 TTGGGGTCTTTAGCGGCGTTTCTGTA-AAGCGCCGCTAATGCTC
33070057 GGCGTTTTTC
Statistics
Matches: 500, Mismatches: 52, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
112 5 0.01
113 321 0.64
114 169 0.34
115 5 0.01
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (113 bp):
TTAGCGGCGGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
TGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTCT
Found at i:33069786 original size:227 final size:224
Alignment explanation
Indices: 33069382--33070056 Score: 958
Period size: 227 Copynumber: 3.0 Consensus size: 224
33069372 AAAATAAGCA
* * * *
33069382 TTAGCGGCATTTATTTGAAAGCGCCGCAAAAAGCCTAAGCCAAAC-GCTACCGTTTTCTGAGTTT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGC-ACCGTTTTCTGAGTTT
* * *
33069446 TTGGTGGTCTTTAGCGGCGTTTCTATAAAGCGCCGCTAATTCTCAAGTCTTTAGCGGCGGTTTTT
65 TT-GAGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATTCTCAGGTCTTTAGCGGC-GTTTTT
* *
33069511 TAAAAGCGCCGCAAAAAGCCTAAACCCAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGTGG
128 TAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGG
*
33069576 CGTTTCTGTAATGCGCCGCTACTGCTCAAGTCT
193 CGTTTCTG-AATGCGCCGCTAATGCTCAAGTCT
* * *
33069609 TTAGCGGCGTTTTTTTAAAAGCGCTGCAAAAAGCCTAAACCCAACGGCACCATTTTCTGAGTTTT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
* * * *
33069674 TGAGGTCTTTCA-CGGCGTTTCTGTTATGCGCCGCTAATTCTCAGGTCTTTTACCGGTGTTTTGT
66 TGAGGTCTTT-AGCGGCGTTTCTGTAAAGCGCCGCTAATTCTCAGGTC-TTTAGCGGCGTTTT-T
* * * *
33069738 TAAAAGCGCCGCAAAAAGCCTAAGCCAAACGGTACCATTTTTTGAGTTTTTGGGGTCTTTAGCGG
128 TAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGG
* * * * *
33069803 CATTTCTGAAAAGCGCTGCTAATGCTCAGGTGT
193 CGTTTCTG-AATGCGCCGCTAATGCTCAAGTCT
* *
33069836 TTAGCAGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
* *
33069901 TGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTCTA
66 TGAGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATTCTCAGGTCTTTAGCGGCGTTTTT-TA
*
33069966 AAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTTTGGGTCTTTAGCGGCG
130 AAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGGCG
33070031 TTTCTGAATAAGCGCCGCTAATGCTC
195 TTTCTGAAT--GCGCCGCTAATGCTC
33070057 GGCGTTTTTC
Statistics
Matches: 394, Mismatches: 46, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
225 3 0.01
226 124 0.31
227 265 0.67
228 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (224 bp):
TTAGCGGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
TGAGGTCTTTAGCGGCGTTTCTGTAAAGCGCCGCTAATTCTCAGGTCTTTAGCGGCGTTTTTTAA
AAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGGCGT
TTCTGAATGCGCCGCTAATGCTCAAGTCT
Found at i:33070023 original size:340 final size:342
Alignment explanation
Indices: 33069399--33070052 Score: 1048
Period size: 340 Copynumber: 1.9 Consensus size: 342
33069389 CATTTATTTG
*
33069399 AAAGCGCCGCAAAAAGCCTAAGCCAAACGCTACCGTTTTCTGAGTTTTTGGTGGTCTTTAGCGGC
1 AAAGCGCCGCAAAAAGCCTAAGCCAAACGCTACCATTTTCTGAGTTTTTGGTGGTCTTTAGCGGC
* * *
33069464 GTTTCTATAAAGCGCCGCTAATTCTCAAGTCTTTAGCGGCGGTTTTTTAAAAGCGCCGCAAAAAG
66 ATTTCTATAAAGCGCCGCTAATGCTCAAGTCTTTAGCAGCGGTTTTTTAAAAGCGCCGCAAAAAG
* * *
33069529 CCTAAACCCAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGTGGCGTTTCTGTAATGCGCCG
131 CCTAAACCCAACGGCACCGTTTTCTGAGCTTTTGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCG
* * *
33069594 CTACTGCTCAAGTCTTTAGCGGCGTTTTTTTAAAAGCGCTGCAAAAAGCCTAAACCCAACGGCAC
196 CTAATGCTCAAGTCTTTAGCGGCGTTTTTCTAAAAGCGCCGCAAAAAGCCTAAACCCAACGGCAC
* *
33069659 CATTTTCTGAGTTTTTGAGGTCTTTCA-CGGCGTTTCTG-TTATGCGCCGCTAATTCTCAGGTCT
261 CATTTTCTGAGTTTTTGAGGTCTTT-AGCGGCGTTTCTGAATAAGCGCCGCTAATTCTCAGGTCT
33069722 TTTACCGGTGTTTTGTTA
325 TTTACCGGTGTTTTGTTA
* *
33069740 AAAGCGCCGCAAAAAGCCTAAGCCAAACGGTACCATTTTTTGAGTTTTTGG-GGTCTTTAGCGGC
1 AAAGCGCCGCAAAAAGCCTAAGCCAAACGCTACCATTTTCTGAGTTTTTGGTGGTCTTTAGCGGC
* * * *
33069804 ATTTCTGA-AAAGCGCTGCTAATGCTCAGGTGTTTAGCAGCGTTTTTTTAAAAGCGCCGCAAAAA
66 ATTTCT-ATAAAGCGCCGCTAATGCTCAAGTCTTTAGCAGCGGTTTTTTAAAAGCGCCGCAAAAA
*
33069868 GCCTAAGCCCAACGGCACCGTTTTCTGAGCTTTTGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCC
130 GCCTAAACCCAACGGCACCGTTTTCTGAGCTTTTGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCC
* *
33069933 GCTAATGCTCAGGTCTTTAGCGGCGTTTTTCTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCA
195 GCTAATGCTCAAGTCTTTAGCGGCGTTTTTCTAAAAGCGCCGCAAAAAGCCTAAACCCAACGGCA
*
33069998 CCGTTTTCTGAGTTTTTTG-GGTCTTTAGCGGCGTTTCTGAATAAGCGCCGCTAAT
260 CCATTTTCTGAG-TTTTTGAGGTCTTTAGCGGCGTTTCTGAATAAGCGCCGCTAAT
33070053 GCTCGGCGTT
Statistics
Matches: 287, Mismatches: 22, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
339 1 0.00
340 218 0.76
341 68 0.24
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (342 bp):
AAAGCGCCGCAAAAAGCCTAAGCCAAACGCTACCATTTTCTGAGTTTTTGGTGGTCTTTAGCGGC
ATTTCTATAAAGCGCCGCTAATGCTCAAGTCTTTAGCAGCGGTTTTTTAAAAGCGCCGCAAAAAG
CCTAAACCCAACGGCACCGTTTTCTGAGCTTTTGGGGTCTTTAGCGGCGTTTCTGTAAAGCGCCG
CTAATGCTCAAGTCTTTAGCGGCGTTTTTCTAAAAGCGCCGCAAAAAGCCTAAACCCAACGGCAC
CATTTTCTGAGTTTTTGAGGTCTTTAGCGGCGTTTCTGAATAAGCGCCGCTAATTCTCAGGTCTT
TTACCGGTGTTTTGTTA
Found at i:33071279 original size:21 final size:21
Alignment explanation
Indices: 33071253--33071297 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
33071243 CAATCATGAA
33071253 ATTTGTCTCTGCCTCTGCATC
1 ATTTGTCTCTGCCTCTGCATC
* *
33071274 ATTTGTCTCTGCTTCTGTATC
1 ATTTGTCTCTGCCTCTGCATC
33071295 ATT
1 ATT
33071298 CGTTACTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.11, C:0.27, G:0.13, T:0.49
Consensus pattern (21 bp):
ATTTGTCTCTGCCTCTGCATC
Found at i:33072030 original size:31 final size:31
Alignment explanation
Indices: 33071969--33072030 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
33071959 TGCTTAAAAT
* * * *
33071969 AATACTTAAATTACATAAGTTAGTTAATTAA
1 AATACATAAAATACATAAGCTAATTAATTAA
33072000 AATACATAAAATACATAA-CTAATTACATTAA
1 AATACATAAAATACATAAGCTAATTA-ATTAA
33072031 TATTATACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.34
Consensus pattern (31 bp):
AATACATAAAATACATAAGCTAATTAATTAA
Found at i:33072069 original size:22 final size:22
Alignment explanation
Indices: 33072020--33072071 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
33072010 ATACATAACT
33072020 AATTACATTAATATTATACATA
1 AATTACATTAATATTATACATA
* **
33072042 ACTTACATTAATATTATATTTA
1 AATTACATTAATATTATACATA
33072064 AATTACAT
1 AATTACAT
33072072 AAGTTAGTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTACATTAATATTATACATA
Found at i:33072137 original size:81 final size:81
Alignment explanation
Indices: 33072036--33072979 Score: 1861
Period size: 81 Copynumber: 11.7 Consensus size: 81
33072026 ATTAATATTA
* **
33072036 TACATAACTTACATTAATATTATATTTAAATTACATAAGTTAGTTAATTAATATTATACATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072101 TACATAACTTACAACT
66 TACATAACTTACAACT
33072117 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072182 TACATAACTTACAACT
66 TACATAACTTACAACT
33072198 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072263 TACATAACTTACAACT
66 TACATAACTTACAACT
33072279 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072344 TACATAACTTACAACT
66 TACATAACTTACAACT
33072360 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072425 TACATAACTTACAACT
66 TACATAACTTACAACT
33072441 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072506 TACATAACTTACAACT
66 TACATAACTTACAACT
33072522 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072587 TACATAACTTACAACT
66 TACATAACTTACAACT
33072603 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072668 TACATAACTTACAACT
66 TACATAACTTACAACT
33072684 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072749 TACATAACTTACAACT
66 TACATAACTTACAACT
33072765 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072830 TACATAACTTACAACT
66 TACATAACTTACAACT
33072846 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
33072911 TACATAACTTACAACT
66 TACATAACTTACAACT
33072927 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATA
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATA
33072980 ACTTACATAA
Statistics
Matches: 860, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 860 1.00
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (81 bp):
TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATGTATAACT
TACATAACTTACAACT
Found at i:33073130 original size:25 final size:25
Alignment explanation
Indices: 33073101--33073157 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
33073091 ACTTACATAG
* *
33073101 CATAATTTTCATAATACACAACTTA
1 CATAATTTGCATAATAAACAACTTA
** *
33073126 CATAATTTGGGTAATAAATAACTTA
1 CATAATTTGCATAATAAACAACTTA
33073151 CATAATT
1 CATAATT
33073158 AGGAAATACT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (25 bp):
CATAATTTGCATAATAAACAACTTA
Found at i:33078744 original size:66 final size:66
Alignment explanation
Indices: 33078596--33078726 Score: 201
Period size: 66 Copynumber: 2.0 Consensus size: 66
33078586 AGCAAATTAC
* * *
33078596 ACAACTTAAAGCAGAGGCAACATCGAGAGAAGTTGAGGTTCAAAAAATATATGAAGAACTCCAGC
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGTTGAGGTTCAAAAAATATATGAAGAACTCCAGC
33078661 T
66 T
* *
33078662 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGTTGAGGTTCAACGAAA-GTATGAAGAACTCCAG
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGTTGAGGTTCAA-AAAATATATGAAGAACTCCAG
33078726 C
65 C
33078727 AGCAGCTTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 56 0.95
67 3 0.05
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.17
Consensus pattern (66 bp):
ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGTTGAGGTTCAAAAAATATATGAAGAACTCCAGC
T
Found at i:33078757 original size:66 final size:66
Alignment explanation
Indices: 33078596--33078759 Score: 188
Period size: 66 Copynumber: 2.5 Consensus size: 66
33078586 AGCAAATTAC
* * * *
33078596 ACAACTTAAAGCAGAGGCAACATCGAGAGAAGTTGAGGTTCAAAAAATATATGAAGAACTCCAGC
1 ACAACTTAAAGCAGATGCAGCAGCAAGAGAAGTTGAGGTTCAAAAAATATATGAAGAACTCCAGC
33078661 T
66 T
* * *
33078662 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGTTGAGGTTCAACGAAA-GTATGAAGAACTCCAG
1 ACAACTTAAAGCAGATGCAGCAGCAAGAGAAGTTGAGGTTCAA-AAAATATATGAAGAACTCCAG
33078726 C-
65 CT
* * * * *
33078727 AGCAGCTTAGAGTAGATGTAGCGGCAAGAGAAG
1 A-CAACTTAAAGCAGATGCAGCAGCAAGAGAAG
33078760 CAGAGGCGGT
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
65 1 0.01
66 81 0.95
67 3 0.04
ACGTcount: A:0.41, C:0.16, G:0.26, T:0.16
Consensus pattern (66 bp):
ACAACTTAAAGCAGATGCAGCAGCAAGAGAAGTTGAGGTTCAAAAAATATATGAAGAACTCCAGC
T
Found at i:33078801 original size:21 final size:21
Alignment explanation
Indices: 33078777--33078848 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
33078767 GGTAGCAAGA
* *
33078777 GAAGTACAGGCTGCAGCGATG
1 GAAGTAGAGGCTGCAGCGAGG
* **
33078798 GAAGCAGAGGCTAAAGCGAGG
1 GAAGTAGAGGCTGCAGCGAGG
* *
33078819 GAAATAGAGGCTGCAACGAGG
1 GAAGTAGAGGCTGCAGCGAGG
*
33078840 GAAGCAGAG
1 GAAGTAGAG
33078849 CAGCGTCAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.40, T:0.08
Consensus pattern (21 bp):
GAAGTAGAGGCTGCAGCGAGG
Found at i:33079325 original size:86 final size:86
Alignment explanation
Indices: 33079199--33079421 Score: 232
Period size: 86 Copynumber: 2.6 Consensus size: 86
33079189 GGTGTTTGGC
* * * *
33079199 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATTAGGGTCTTTTGCGGCATTTGTGGAAAA
1 CTTTAGCGGCGTTTTTAGTCAAAACGCCGCTAAAGATTAGGGTCTTTAGCGGCATTTGTGGAAAA
*
33079264 GGCGCCACTAAAGATCATGGT
66 GGCGCCACTAAAGATCAGGGT
* * * * * * * ***
33079285 CTTTAGCGGCGTTTTTAGTGAAAACGCTGTTAAAGATTAGGTTCTTTAGTGGCGTTTGTTGTCGA
1 CTTTAGCGGCGTTTTTAGTCAAAACGCCGCTAAAGATTAGGGTCTTTAGCGGCATTTGTGGAAAA
* *
33079350 GGCGCCGCTATAGATCAGGGT
66 GGCGCCACTAAAGATCAGGGT
* * ** *
33079371 CTTTAGCGGCGCTTAT-CCCAAAAACGCCGCTAAAGATCAGGGTCTTTAGCG
1 CTTTAGCGGCGTTTTTAGTC-AAAACGCCGCTAAAGATTAGGGTCTTTAGCG
33079422 ACGCTTATCC
Statistics
Matches: 109, Mismatches: 27, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
86 109 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (86 bp):
CTTTAGCGGCGTTTTTAGTCAAAACGCCGCTAAAGATTAGGGTCTTTAGCGGCATTTGTGGAAAA
GGCGCCACTAAAGATCAGGGT
Found at i:33079374 original size:43 final size:43
Alignment explanation
Indices: 33079199--33079490 Score: 180
Period size: 43 Copynumber: 6.8 Consensus size: 43
33079189 GGTGTTTGGC
* * *
33079199 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATTAGGGT
1 CTTTAGCGGCGTTTTTAGTCAAAGCGCCGCTAAAGATCAGGGT
* * * ** * *
33079242 CTTTTGCGGCATTTGT-GGAAAAGGCGCCACTAAAGATCATGGT
1 CTTTAGCGGCGTTTTTAGTCAAA-GCGCCGCTAAAGATCAGGGT
* * * * * *
33079285 CTTTAGCGGCGTTTTTAGTGAAAACGCTGTTAAAGATTAGGTT
1 CTTTAGCGGCGTTTTTAGTCAAAGCGCCGCTAAAGATCAGGGT
* * * *
33079328 CTTTAGTGGCGTTTGTT-GTCGAGGCGCCGCTATAGATCAGGGT
1 CTTTAGCGGCGTTT-TTAGTCAAAGCGCCGCTAAAGATCAGGGT
* * ** *
33079371 CTTTAGCGGCGCTTAT-CCCAAAAACGCCGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTTTAGTC-AAAGCGCCGCTAAAGATCAGGGT
* * * ** * * *
33079414 CTTTAGCGACGCTTAT-CCCAAAAACACCGCTAAAGATCAGGAT
1 CTTTAGCGGCGTTTTTAGTC-AAAGCGCCGCTAAAGATCAGGGT
* * * *
33079457 CTTTAGCGGCGCTTCTACT-AAAGTGCCGCTAAAG
1 CTTTAGCGGCGTTTTTAGTCAAAGCGCCGCTAAAG
33079491 GTCTTATTCT
Statistics
Matches: 195, Mismatches: 49, Indels: 11
0.76 0.19 0.04
Matches are distributed among these distances:
42 18 0.09
43 170 0.87
44 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGTTTTTAGTCAAAGCGCCGCTAAAGATCAGGGT
Found at i:33079438 original size:129 final size:129
Alignment explanation
Indices: 33079199--33079467 Score: 272
Period size: 129 Copynumber: 2.1 Consensus size: 129
33079189 GGTGTTTGGC
* * * * **
33079199 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATTAGGGTCTTTTGCGGCATTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCACTTATCCAAAA
* * * * * *** * * * * *
33079264 GGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTTTAGTGAAAACGCTGTTAAAGATTAGGTT
66 GACGCCACTAAAGATCAGGGTCTTTAGCGACGCTTATACCAAAAACACCGCTAAAGATCAGGAT
* * * *
33079328 CTTTAGTGGCGTTTGTT-GTCGAGGCGCCGCTATAGATCAGGGTCTTTAGCGGCGCTTATCCCAA
1 CTTTAGTGGCGTTT-TTGGTCAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCACTTAT-CCAA
* *
33079392 AA-ACGCCGCTAAAGATCAGGGTCTTTAGCGACGCTTATCCCAAAAACACCGCTAAAGATCAGGA
64 AAGACGCCACTAAAGATCAGGGTCTTTAGCGACGCTTATACCAAAAACACCGCTAAAGATCAGGA
33079456 T
129 T
*
33079457 CTTTAGCGGCG
1 CTTTAGTGGCG
33079468 CTTCTACTAA
Statistics
Matches: 112, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
129 106 0.95
130 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (129 bp):
CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCACTTATCCAAAA
GACGCCACTAAAGATCAGGGTCTTTAGCGACGCTTATACCAAAAACACCGCTAAAGATCAGGAT
Done.