Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 108 of 185
Found at i:33961337 original size:140 final size:141
Alignment explanation
Indices: 33961073--33961338 Score: 471
Period size: 140 Copynumber: 1.9 Consensus size: 141
33961063 ATAAATAAAT
*
33961073 AAATAAAATGAATAAAATTATAAAAATGTAAAAAGGTATATATATGTACATATTATAGGATATAA
1 AAATAAAATAAATAAAATTATAAAAATGTAAAAAGGTATATATATGTACATATTATAGGATATAA
* * *
33961138 TAAAAATATATAAGTATGTATTTATATATTCATGAAAATTAAAAAATGTATATAGATATATTAAT
66 TAAAAATATATAAGTATGTATTTATATATTCATGAAAATTAAAAAATATAAAAAGATATATTAAT
33961203 AATGAAAATGC
131 AATGAAAATGC
*
33961214 AAAT-AAATAAATAAAATTATAAAAATGTAAAAAGGTATATATATGTACATATTGTAGGATATAA
1 AAATAAAATAAATAAAATTATAAAAATGTAAAAAGGTATATATATGTACATATTATAGGATATAA
*
33961278 TAAAAATATATAAGTATGTATTTATATATTCATGAAAATTAAAAAATATAAAAATATATAT
66 TAAAAATATATAAGTATGTATTTATATATTCATGAAAATTAAAAAATATAAAAAGATATAT
33961339 ATGAGAATGA
Statistics
Matches: 119, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
140 115 0.97
141 4 0.03
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (141 bp):
AAATAAAATAAATAAAATTATAAAAATGTAAAAAGGTATATATATGTACATATTATAGGATATAA
TAAAAATATATAAGTATGTATTTATATATTCATGAAAATTAAAAAATATAAAAAGATATATTAAT
AATGAAAATGC
Found at i:33962050 original size:76 final size:76
Alignment explanation
Indices: 33961924--33962076 Score: 297
Period size: 76 Copynumber: 2.0 Consensus size: 76
33961914 GTCGCCGGCG
*
33961924 ACGGCGCCGCCGTCCACGGTGGCCAGAGAATTCGAAAAGGTGACTCTTTTTTTGCTATATATTTA
1 ACGGCGCCCCCGTCCACGGTGGCCAGAGAATTCGAAAAGGTGACTCTTTTTTTGCTATATATTTA
33961989 TGTGTATATAT
66 TGTGTATATAT
33962000 ACGGCGCCCCCGTCCACGGTGGCCAGAGAATTCGAAAAGGTGACTCTTTTTTTGCTATATATTTA
1 ACGGCGCCCCCGTCCACGGTGGCCAGAGAATTCGAAAAGGTGACTCTTTTTTTGCTATATATTTA
33962065 TGTGTATATAT
66 TGTGTATATAT
33962076 A
1 A
33962077 TAAAAAAACA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (76 bp):
ACGGCGCCCCCGTCCACGGTGGCCAGAGAATTCGAAAAGGTGACTCTTTTTTTGCTATATATTTA
TGTGTATATAT
Found at i:33963046 original size:90 final size:90
Alignment explanation
Indices: 33962936--33963123 Score: 268
Period size: 90 Copynumber: 2.1 Consensus size: 90
33962926 CTTTGATCTG
* * * * * *
33962936 CTCCACTACTGCTTAAGGAGACAGGATCTGCAATCTTTAACTTACTCCACTGCTGCTTAGGGAGA
1 CTCCACTACTACTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTCAGGGAGA
*
33963001 TAGGACTAATGGCTTAAATTTGCTT
66 TAGGACTAATGGCTTAAATCTGCTT
* * * * *
33963026 CTCTACTACTACTTAGGGAGATAGAATTTGCAATCTTCATCCTACTCCACTACTGCTCAGGGAGA
1 CTCCACTACTACTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTCAGGGAGA
33963091 TAGGACTAATGGCTTAAATCTGCTT
66 TAGGACTAATGGCTTAAATCTGCTT
33963116 CTCCACTA
1 CTCCACTA
33963124 TCTTGGGAAG
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (90 bp):
CTCCACTACTACTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTCAGGGAGA
TAGGACTAATGGCTTAAATCTGCTT
Found at i:33963090 original size:44 final size:44
Alignment explanation
Indices: 33963030--33963753 Score: 225
Period size: 44 Copynumber: 16.5 Consensus size: 44
33963020 TTGCTTCTCT
*
33963030 ACTACTACTTAGGGAGATAGAATTTGCAATCTTCATCCTACTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAATCTTCATCCTACTCC
* * * * *
33963074 ACTACTGCTCAGGGAGATAGGA-CT--AATGGCTTAAATCTGCTTCTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAAT--CTT-CATC--CTACTCC
* * *
33963120 ACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCGATCC-ACTCC
1 ACTACTACTTAGGG-AGAT-AGAATCTGCAATCTTC-ATCCTACTCC
* * *
33963162 ACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAATCTTCATCCTACTCC
* * *
33963206 ACTACTACTTAGGGAGATAGAA-CT--AATGACTTAAGTCTGGTTCTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAAT--CTTCA-TC--CTACTCC
* * * *
33963252 ACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCGAT-CTGCTCC
1 ACTACTACTTAGGG-AGAT-AGAATCTGCAATCTTC-ATCCTACTCC
* * * * *
33963294 ACTACTACTTAGGGAGACAAAATCTGTAATTTTCAACCTACTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAATCTTCATCCTACTCC
* * * * *
33963338 ACTACTGCTTAGAGAGATAGGA-CT--AATGGCTTAAATCTACTTCTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAAT--CTT-CATC--CTACTCC
* * * * *
33963384 ACTA-T-CTT-GGGAATATAAGATTC-ACCATCTTCGAT-CTGCTCC
1 ACTACTACTTAGGG-AGAT-AGAATCTGCAATCTTC-ATCCTACTCC
* *
33963426 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAATCTTCATCCTACTCC
* * * *
33963470 ACTACTGCTTAGGGAAATA-AGA-CT--AATGGCTTAAATCTGCTTCTCC
1 ACTACTACTTAGGGAGATAGA-ATCTGCAAT--CTT-CATC--CTACTCC
* * * * *
33963516 ACTA-T-CTT-GTGAAGATAAGATTC-ACCATCTTCGAT-CTGCTCC
1 ACTACTACTTAG-GGAGAT-AGAATCTGCAATCTTC-ATCCTACTCC
* * * *
33963558 ACTACTGCTTAGGGAGACAGAATTTGCAATCTTCAACCTACTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAATCTTCATCCTACTCC
* * * *
33963602 ACTACTGCTTAGGGAGATAGGA-CT--AATGACTTAAATCTGCTTCTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAAT--CTT-CATC--CTACTCC
* * * *
33963648 ACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCGAT-CTGCTCC
1 ACTACTACTTAGGG-AGAT-AGAATCTGCAATCTTC-ATCCTACTCC
* * * * *
33963690 ACTACTGCTTAGGGAGACAGGATCTGCAATCTTTAACCTACTCC
1 ACTACTACTTAGGGAGATAGAATCTGCAATCTTCATCCTACTCC
*
33963734 ACTACTGCTTAGGGAGATAG
1 ACTACTACTTAGGGAGATAG
33963754 GACTTGTATC
Statistics
Matches: 498, Mismatches: 100, Indels: 164
0.65 0.13 0.22
Matches are distributed among these distances:
41 15 0.03
42 47 0.09
43 71 0.14
44 246 0.49
45 53 0.11
46 56 0.11
47 10 0.02
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
ACTACTACTTAGGGAGATAGAATCTGCAATCTTCATCCTACTCC
Found at i:33963192 original size:132 final size:132
Alignment explanation
Indices: 33963030--33963757 Score: 1213
Period size: 132 Copynumber: 5.5 Consensus size: 132
33963020 TTGCTTCTCT
* * * *
33963030 ACTACTACTTAGGGAGATAGAATTTGCAATCTTCATCCTACTCCACTACTGCTCAGGGAGATAGG
1 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
**
33963095 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCCACT
66 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
33963160 CC
131 CC
* * *
33963162 ACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAGA
1 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
* * *
33963227 ACTAATGACTTAAGTCTGGTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
33963292 CC
131 CC
* * * *
33963294 ACTACTACTTAGGGAGACAAAATCTGTAATTTTCAACCTACTCCACTACTGCTTAGAGAGATAGG
1 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
* *
33963359 ACTAATGGCTTAAATCTACTTCTCCACTATCTTGGGAATATAAGATTCACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
33963424 CC
131 CC
* *
33963426 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAAATAAG
1 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
*
33963491 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGTGAAGATAAGATTCACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
33963556 CC
131 CC
* *
33963558 ACTACTGCTTAGGGAGACAGAATTTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
1 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
*
33963623 ACTAATGACTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
33963688 CC
131 CC
* * *
33963690 ACTACTGCTTAGGGAGACAGGATCTGCAATCTTTAACCTACTCCACTACTGCTTAGGGAGATAGG
1 ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
33963755 ACT
66 ACT
33963758 TGTATCTTCA
Statistics
Matches: 554, Mismatches: 42, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 554 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (132 bp):
ACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
CC
Found at i:33963915 original size:89 final size:89
Alignment explanation
Indices: 33963760--33964477 Score: 1015
Period size: 89 Copynumber: 8.1 Consensus size: 89
33963750 ATAGGACTTG
* **
33963760 TATCTTCAGTCTGTTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTTAATCTGCTTCGCTG
1 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
*
33963825 TCAGTACAGGAAGGCAATATCTGC
66 TCAGTACAGGAAGGCAAGATCTGC
* * *
33963849 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGTAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTG
1 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
* *
33963914 TCAGTACAGGAAGGAAAGATCTGT
66 TCAGTACAGGAAGGCAAGATCTGC
* * *
33963938 TATCTTCAGTCTGCTCCGCTATCAGTATAGGAAGGCAAGGCTGATGTCTTCGATCTGCTTCGCTG
1 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
* *
33964003 TCAGTACAGGAAGGCAAGACCTGT
66 TCAGTACAGGAAGGCAAGATCTGC
* * * *
33964027 TATCTTCAGTCTGCTCCACTGTCTGTACAGGAAGGCACGGATGGTGTCTTCGATCTGCTTCGCTG
1 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
*
33964092 TCAGTATAGGAAGGCAAGATCTGC
66 TCAGTACAGGAAGGCAAGATCTGC
* * * * *
33964116 TATCTTCAGTCTGCTCCGCTGTTAGCACAGGAAGGCAAGGCTAGTGTCTTCGATCTACTTCGCTA
1 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
*
33964181 TCAGTACAAGAAGGCAAGATCTGC
66 TCAGTACAGGAAGGCAAGATCTGC
**
33964205 TATCTTCAGTCTGCTCCAATGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
1 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
* * **
33964270 TCAGTACAAGAAGGAAAGATCCAC
66 TCAGTACAGGAAGGCAAGATCTGC
* * * * *
33964294 TATCTTCAGTCTGTTCTGCTATCAGTACAGGAAGGCAAGGCTGATGTCTTTGATCTGCTTCGCTG
1 TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
* *
33964359 TCAGTATAGGAAGGCAATATCTGC
66 TCAGTACAGGAAGGCAAGATCTGC
* * **
33964383 TATC-TCTAGTCTGCCCCGTTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTTACT
1 TATCTTC-AGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCT
* * *
33964447 ATCAGTATAGGAAGGCAAGATCTAC
65 GTCAGTACAGGAAGGCAAGATCTGC
33964472 TATCTT
1 TATCTT
33964478 TACTGATCTG
Statistics
Matches: 554, Mismatches: 73, Indels: 3
0.88 0.12 0.00
Matches are distributed among these distances:
88 2 0.00
89 551 0.99
90 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (89 bp):
TATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
TCAGTACAGGAAGGCAAGATCTGC
Found at i:33975705 original size:13 final size:14
Alignment explanation
Indices: 33975686--33975723 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
33975676 CAATGACATA
33975686 GAAATAATATAAAC
1 GAAATAATATAAAC
33975700 -AAATAA-ATAAAC
1 GAAATAATATAAAC
33975712 GAAATGAATATA
1 GAAAT-AATATA
33975724 TATAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 10 0.48
14 2 0.10
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:33977040 original size:38 final size:38
Alignment explanation
Indices: 33976993--33977071 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
33976983 TTGAACTGTC
33976993 TTTTTGCTGTGAAAATAATTATGTTTCTTATTGATTTT
1 TTTTTGCTGTGAAAATAATTATGTTTCTTATTGATTTT
*
33977031 TTTTTGCTGTGAAAATAATTATTTTTCTTATTGATTTT
1 TTTTTGCTGTGAAAATAATTATGTTTCTTATTGATTTT
33977069 TTT
1 TTT
33977072 GGATCCTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.23, C:0.05, G:0.11, T:0.61
Consensus pattern (38 bp):
TTTTTGCTGTGAAAATAATTATGTTTCTTATTGATTTT
Found at i:33977992 original size:44 final size:44
Alignment explanation
Indices: 33977940--33978051 Score: 129
Period size: 44 Copynumber: 2.5 Consensus size: 44
33977930 GATCTGCTCT
*
33977940 CTGTAACTTCAGAGAGATAAGATCT-GTGATTTTAATCCGTTCCA
1 CTGTAACTTCAGAGAGATAAGAT-TAGTGATTTTAATCCGCTCCA
* * * *
33977984 CTGTAACTTCA-AGAAGATAGGATTATTGGTTTTAATCTGCTCCA
1 CTGTAACTTCAGAG-AGATAAGATTAGTGATTTTAATCCGCTCCA
* *
33978028 CTGCAACTTCAGGGAGATAAGATT
1 CTGTAACTTCAGAGAGATAAGATT
33978052 CGCCATCTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
43 3 0.05
44 53 0.93
45 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (44 bp):
CTGTAACTTCAGAGAGATAAGATTAGTGATTTTAATCCGCTCCA
Found at i:33978421 original size:100 final size:100
Alignment explanation
Indices: 33978250--33978433 Score: 253
Period size: 100 Copynumber: 1.8 Consensus size: 100
33978240 CCTTAATGCC
* * *
33978250 AGGGAGATAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATAAAATTC
1 AGGGAGATAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGAGAAATAAAATTC
*
33978315 ATCGTTGCGGCTTCAATCTTTTAAATTGTAATGTT
66 ACCGTTGCGGCTTCAATCTTTTAAATTGTAATGTT
* * * * *
33978350 AGGGA-ATCAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGAGAAGTAAGATT
1 AGGGAGAT-AAGATTCACCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGAGAAATAAAATT
* *
33978414 CGCCGTTGCGGCTTTAATCT
65 CACCGTTGCGGCTTCAATCT
33978434 GCTCCACTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 2 0.03
100 70 0.97
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (100 bp):
AGGGAGATAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGAGAAATAAAATTC
ACCGTTGCGGCTTCAATCTTTTAAATTGTAATGTT
Found at i:33978464 original size:100 final size:100
Alignment explanation
Indices: 33978243--33978466 Score: 243
Period size: 100 Copynumber: 2.2 Consensus size: 100
33978233 ATCCAGGCCT
* * * *
33978243 TAATGCCAGGGAGATAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAAT
1 TAATGCCAGGGAGATAAGATTCGCCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGAGAAAT
* ** *
33978308 AAAATTCATCGTTGCGGCTTCAATCTTTTAAATTG
66 AAAATTCACCGTTGCGGCTTCAATCTGCTAAACTG
** * * *
33978343 TAATGTTAGGGA-ATCAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGAGAAG
1 TAATGCCAGGGAGAT-AAGATTCGCCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGAGAAA
* * * **
33978407 TAAGATTCGCCGTTGCGGCTTTAATCTGCTCCACTG
65 TAAAATTCACCGTTGCGGCTTCAATCTGCTAAACTG
** *
33978443 TAATGCCAAAGAGATAGGATTCGC
1 TAATGCCAGGGAGATAAGATTCGC
33978467 TGCCCATAAC
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
99 2 0.02
100 95 0.96
101 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (100 bp):
TAATGCCAGGGAGATAAGATTCGCCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGAGAAAT
AAAATTCACCGTTGCGGCTTCAATCTGCTAAACTG
Found at i:33978541 original size:267 final size:265
Alignment explanation
Indices: 33978066--33978870 Score: 1200
Period size: 267 Copynumber: 3.0 Consensus size: 265
33978056 ATCTTCAGTA
* *
33978066 TTTTAAATTACAATGTTGGGGAAACAAGATTCGCTGTCGTAGCTTCAATCTGTTCCACTATACCG
1 TTTTAAATTACAATGTT-GGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
* * *
33978131 CCA-AGGAAGTAAGATTCGCCGTTGCGACTTTAATCTGTTCCACTGTAATGCCAATGAGATAGGA
65 CCAGA-GAAGTAAGATTCGCCGTTGCGGCTTTAATCTGCTCCACTGTAATGCCAAAGAGATAGGA
* * *
33978195 TTCGCTGCCCACAGCTTCAATCTGCTCCACTTCAGTTAATCCAGGCCTTAATGCCAGGGAGATAA
129 TTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAGGCCTTAACGCC-GGGAGATAA
* **
33978260 GATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATAAAATTCATCGTTGCGG
193 GATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATAAGATTCGCCGTTGCGG
33978325 CTTCAATC
258 CTTCAATC
** *
33978333 TTTTAAATTGTAATGTTAGGGAATCAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
1 TTTTAAATTACAATGTT-GGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
33978398 CCAGAGAAGTAAGATTCGCCGTTGCGGCTTTAATCTGCTCCACTGTAATGCCAAAGAGATAGGAT
65 CCAGAGAAGTAAGATTCGCCGTTGCGGCTTTAATCTGCTCCACTGTAATGCCAAAGAGATAGGAT
* * *
33978463 TCGCTGCCCATAACTTCAATCCGCTCCACTTCAGCTAATCTAGGCCTTAACGCCGGGCAGATAAG
130 TCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAGGCCTTAACGCCGGG-AGATAAG
* * * *
33978528 ATTCGCCGTCGTGGCTTCAATCTACTCCGCTACAACTCCAGGGAAATAAGATTCGCCATTGCGGC
194 ATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATAAGATTCGCCGTTGCGGC
33978593 TTCAATC
259 TTCAATC
* * *
33978600 TTTTAAATTACAATGTTGGGTAAACAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTACACCA
1 TTTTAAATTACAATGTTGGG-AAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
* * *
33978665 CCATG-GGAGTAAGATTCGCCGTTGCGGCTTCAATCTGCTCCACTATAATGCCAAAGAGATAGGA
65 CCA-GAGAAGTAAGATTCGCCGTTGCGGCTTTAATCTGCTCCACTGTAATGCCAAAGAGATAGGA
* * *
33978729 TTCGCTGCCCACAGTTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAA
129 TTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAGGCCTTAACGC-CGGGAGATAA
* * * * * *
33978794 GATTCACCGTTGTGACTTCAATCTGCTCTGCTAAAACGCCAGGGAAATAAGATTTGCCGTTGTGG
193 GATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATAAGATTCGCCGTTGCGG
33978859 CTTCAATC
258 CTTCAATC
33978867 TTTT
1 TTTT
33978871 CCATTGTAAC
Statistics
Matches: 486, Mismatches: 47, Indels: 10
0.90 0.09 0.02
Matches are distributed among these distances:
266 6 0.01
267 475 0.98
268 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (265 bp):
TTTTAAATTACAATGTTGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGC
CAGAGAAGTAAGATTCGCCGTTGCGGCTTTAATCTGCTCCACTGTAATGCCAAAGAGATAGGATT
CGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAGGCCTTAACGCCGGGAGATAAGAT
TCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATAAGATTCGCCGTTGCGGCTT
CAATC
Found at i:33978612 original size:50 final size:50
Alignment explanation
Indices: 33978523--33978701 Score: 128
Period size: 50 Copynumber: 3.6 Consensus size: 50
33978513 CGCCGGGCAG
* * ** ***
33978523 ATAAGATTCGCCGTCGTGGCTTCAATCTACTCCGCTACAACTCCAGGGAA
1 ATAAGATTCGCCGTTGCGGCTTCAATCTGTTAAACTACAACTCCAGGGAA
* * * ***
33978573 ATAAGATTCGCCATTGCGGCTTCAATCTTTTAAATTACAA-TGTTGGGTAA
1 ATAAGATTCGCCGTTGCGGCTTCAATCTGTTAAACTACAACTCCAGGG-AA
* * ** ** * *
33978623 ACAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTACACCACCATGGG-A
1 ATAAGATTCGCCGTTGCGGCTTCAATCTGTTAAACTACAACTCCA-GGGAA
*
33978673 GTAAGATTCGCCGTTGCGGCTTCAATCTG
1 ATAAGATTCGCCGTTGCGGCTTCAATCTG
33978702 CTCCACTATA
Statistics
Matches: 95, Mismatches: 31, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
49 4 0.04
50 88 0.93
52 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (50 bp):
ATAAGATTCGCCGTTGCGGCTTCAATCTGTTAAACTACAACTCCAGGGAA
Found at i:33980261 original size:13 final size:13
Alignment explanation
Indices: 33980213--33980253 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
33980203 TGGCCTCTCC
* *
33980213 TTTTCCTTTTCTT
1 TTTTCTTTTTATT
*
33980226 CTTTCTTTTTATT
1 TTTTCTTTTTATT
33980239 TTTTCTTTTTATT
1 TTTTCTTTTTATT
33980252 TT
1 TT
33980254 ATTTTTTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTTATT
Found at i:33980263 original size:20 final size:20
Alignment explanation
Indices: 33980219--33980260 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
33980209 CTCCTTTTCC
*
33980219 TTTTCTTCTTTCTTTTTATT
1 TTTTCTTCTTTATTTTTATT
33980239 TTTTCTT-TTTA-TTTTATT
1 TTTTCTTCTTTATTTTTATT
33980257 TTTT
1 TTTT
33980261 TTCATCATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 3 0.14
20 7 0.33
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTCTTCTTTATTTTTATT
Found at i:33981091 original size:25 final size:25
Alignment explanation
Indices: 33981063--33981128 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
33981053 AAGAAGATCC
*
33981063 AAAAGAATGAAAGAATAATT-ATTCA
1 AAAAGAATGAAAGAAT-ATTGACTCA
33981088 AAAAGAATGAAAGAATATTGACTCA
1 AAAAGAATGAAAGAATATTGACTCA
33981113 AAAATGAATGTAAAGA
1 AAAA-GAATG-AAAGA
33981129 TTTATTTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
24 3 0.08
25 24 0.65
26 5 0.14
27 5 0.14
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.21
Consensus pattern (25 bp):
AAAAGAATGAAAGAATATTGACTCA
Found at i:33986048 original size:107 final size:107
Alignment explanation
Indices: 33985857--33986049 Score: 323
Period size: 107 Copynumber: 1.8 Consensus size: 107
33985847 CAGGTAATTG
**
33985857 TCGAAACCATTTTTATTTTTTGGAAAAAAACAAAAATTAGTTGTCGATGAAAATTTAGAGTCGTC
1 TCGAAACCATTTTTATTTTTTGGAAAAAAACAAAAATTAGTTGTCGATGAAAATTTAGAGTCACC
* *
33985922 GCCAATCTTTTATTGAGGTGTCCCAGTGGAGTCGCCAAGCTA
66 ACCAATCTTTTATTAAGGTGTCCCAGTGGAGTCGCCAAGCTA
* *
33985964 TCGAAACCATTTTTATTTTTTGGAAAACAACAAAAATTAGTTGTCGATGAAAATTTGGAGTCACC
1 TCGAAACCATTTTTATTTTTTGGAAAAAAACAAAAATTAGTTGTCGATGAAAATTTAGAGTCACC
*
33986029 ACCTATCTTTTATTAAGGTGT
66 ACCAATCTTTTATTAAGGTGT
33986050 GATTGGATCA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
107 79 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Consensus pattern (107 bp):
TCGAAACCATTTTTATTTTTTGGAAAAAAACAAAAATTAGTTGTCGATGAAAATTTAGAGTCACC
ACCAATCTTTTATTAAGGTGTCCCAGTGGAGTCGCCAAGCTA
Found at i:33986764 original size:13 final size:14
Alignment explanation
Indices: 33986745--33986782 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
33986735 CAATGACATA
33986745 GAAATAATATAAAC
1 GAAATAATATAAAC
33986759 -AAATAA-ATAAAC
1 GAAATAATATAAAC
33986771 GAAATGAATATA
1 GAAAT-AATATA
33986783 TATAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 10 0.48
14 2 0.10
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:33986897 original size:15 final size:14
Alignment explanation
Indices: 33986870--33986896 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33986860 AATTAAGGAA
33986870 ATAAAGAAAAAAAT
1 ATAAAGAAAAAAAT
33986884 ATAAAGAAAAAAA
1 ATAAAGAAAAAAA
33986897 AAGTACAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.11
Consensus pattern (14 bp):
ATAAAGAAAAAAAT
Found at i:33988802 original size:4 final size:4
Alignment explanation
Indices: 33988793--33988826 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
33988783 AAGTTTTATT
33988793 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
33988827 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:33988834 original size:22 final size:22
Alignment explanation
Indices: 33988776--33988835 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
33988766 AAGTGGCCCA
*
33988776 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
33988800 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
33988821 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
33988836 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:33991182 original size:18 final size:18
Alignment explanation
Indices: 33991161--33991199 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
33991151 GATTGAGAGT
* *
33991161 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
33991179 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
33991197 GAA
1 GAA
33991200 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:33992608 original size:4 final size:4
Alignment explanation
Indices: 33992599--33992632 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
33992589 AAGTTTTATT
33992599 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
33992633 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:33992640 original size:22 final size:22
Alignment explanation
Indices: 33992582--33992641 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
33992572 AAGTGGCCCA
*
33992582 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
33992606 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
33992627 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
33992642 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:33993811 original size:23 final size:23
Alignment explanation
Indices: 33993767--33993817 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
33993757 GTTGCCTATA
* * * * *
33993767 TATAAATTTTTAATAAATAAAAT
1 TATAAATATTAAAAAAACAAAAC
33993790 TATAAATATTAAAAAAACAAAAC
1 TATAAATATTAAAAAAACAAAAC
33993813 TATAA
1 TATAA
33993818 TATGGACAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
TATAAATATTAAAAAAACAAAAC
Found at i:33995620 original size:25 final size:24
Alignment explanation
Indices: 33995585--33995636 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
33995575 AAAGAAATAG
33995585 AAAAATAACCGAAAAATAGAGCTGA
1 AAAAATAACCGAAAAATAGA-CTGA
* *
33995610 AAAAATGACCGAAAAATATACTGA
1 AAAAATAACCGAAAAATAGACTGA
33995634 AAA
1 AAA
33995637 GAAACAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.62, C:0.12, G:0.13, T:0.13
Consensus pattern (24 bp):
AAAAATAACCGAAAAATAGACTGA
Found at i:33999519 original size:14 final size:14
Alignment explanation
Indices: 33999500--33999528 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33999490 GTAGTGTTTG
33999500 AGAATTTGGAATTT
1 AGAATTTGGAATTT
33999514 AGAATTTGGAATTT
1 AGAATTTGGAATTT
33999528 A
1 A
33999529 TAAGTAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (14 bp):
AGAATTTGGAATTT
Found at i:34005314 original size:16 final size:15
Alignment explanation
Indices: 34005293--34005330 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
34005283 AATTAAATTA
34005293 TAATTTATATTATTTT
1 TAATTTATA-TATTTT
*
34005309 TAATTTTTATATTTT
1 TAATTTATATATTTT
34005324 T-ATTTAT
1 TAATTTAT
34005331 TAAAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 5 0.25
15 7 0.35
16 8 0.40
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TAATTTATATATTTT
Found at i:34011804 original size:20 final size:20
Alignment explanation
Indices: 34011775--34011813 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34011765 ATATTTTCTG
*
34011775 GTAAATCATTTTACAGAAAA
1 GTAAAACATTTTACAGAAAA
*
34011795 GTAAAACATTTTCCAGAAA
1 GTAAAACATTTTACAGAAA
34011814 TCATTTTACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
GTAAAACATTTTACAGAAAA
Found at i:34011820 original size:14 final size:14
Alignment explanation
Indices: 34011797--34011836 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
34011787 ACAGAAAAGT
*
34011797 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
34011811 AAATCATTTTACGG
1 AAAACATTTTACAG
34011825 AAAACATTTTAC
1 AAAACATTTTAC
34011837 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:34013367 original size:57 final size:59
Alignment explanation
Indices: 34013255--34013403 Score: 189
Period size: 57 Copynumber: 2.5 Consensus size: 59
34013245 AATTGACGGT
* *
34013255 AAAAAGGATCTAGCCCGGATGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATATGTGTG
1 AAAAAGGATCTAGCCCGGACGGGTGATCC-AT-CTGATATAACCCTCCCGAAGAATA--TGTG
34013318 AAAAA-GATCTAGCCCGGACGGGTGAT-C-T-TGATATAACCCTCCCGAAGAATATGTG
1 AAAAAGGATCTAGCCCGGACGGGTGATCCATCTGATATAACCCTCCCGAAGAATATGTG
* *
34013373 AAAAATGGATTTAGCCCGGACGGGTAATCCA
1 AAAAA-GGATCTAGCCCGGACGGGTGATCCA
34013404 AATTAGGGTC
Statistics
Matches: 78, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
55 9 0.12
57 41 0.53
58 1 0.01
59 1 0.01
61 1 0.01
62 20 0.26
63 5 0.06
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (59 bp):
AAAAAGGATCTAGCCCGGACGGGTGATCCATCTGATATAACCCTCCCGAAGAATATGTG
Found at i:34015011 original size:19 final size:19
Alignment explanation
Indices: 34014961--34015015 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
34014951 TTTTCATTAA
34014961 TTTATTGATTAATTGACTATT
1 TTTATTG-TT-ATTGACTATT
*
34014982 TTTATTTTTATT-ACTATT
1 TTTATTGTTATTGACTATT
34015000 TATTATTGTTATTGAC
1 T-TTATTGTTATTGAC
34015016 ATTATTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 7 0.23
19 13 0.43
20 4 0.13
21 6 0.20
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62
Consensus pattern (19 bp):
TTTATTGTTATTGACTATT
Found at i:34015022 original size:18 final size:19
Alignment explanation
Indices: 34014962--34015023 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
34014952 TTTCATTAAT
*
34014962 TTATTGATTAATTGACTATTT
1 TTATTG-TT-ATTGACTATTA
*
34014983 TTATTTTTATT-ACTATTTA
1 TTATTGTTATTGACTA-TTA
34015002 TTATTGTTATTGAC-ATTA
1 TTATTGTTATTGACTATTA
34015020 TTAT
1 TTAT
34015024 ATTTGATTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 11 0.31
19 16 0.44
20 4 0.11
21 5 0.14
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.61
Consensus pattern (19 bp):
TTATTGTTATTGACTATTA
Found at i:34031082 original size:17 final size:17
Alignment explanation
Indices: 34031040--34031082 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
34031030 ATAGTTTATA
34031040 TATATTTTATATACATT
1 TATATTTTATATACATT
* * *
34031057 CATATTTTTTATGATATT
1 TATATTTTATAT-ACATT
34031075 TATATTTT
1 TATATTTT
34031083 CATGTTTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (17 bp):
TATATTTTATATACATT
Found at i:34032631 original size:17 final size:17
Alignment explanation
Indices: 34032609--34032643 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
34032599 GCCATCACAT
34032609 GGCATTTCATTTTAAAA
1 GGCATTTCATTTTAAAA
34032626 GGCATTTCATTTTAAAA
1 GGCATTTCATTTTAAAA
34032643 G
1 G
34032644 TGATAGTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (17 bp):
GGCATTTCATTTTAAAA
Found at i:34038013 original size:50 final size:51
Alignment explanation
Indices: 34037932--34038843 Score: 581
Period size: 50 Copynumber: 18.3 Consensus size: 51
34037922 TAGCAGATTT
* ** *
34037932 TTATTTCCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGAAC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * * ** * ** *
34037982 TTATTTCCCTAG-CGGTGCAGTGGAGCAGATTGAAGCTATGACGGCGAATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
** * * *
34038032 TGGTTTCCCT-GACATTGCAAT-TAAAAGATTGAAGCCACAACGACGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * ** * *
34038081 TTATTTCCCT-GGCAGTGCAGTGGAGCAGATTGAAGCTACGACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
** * **
34038131 TGGTTTCCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * ** * *
34038181 TTATTTCCCT-GACGGTGCAGTGGAGCAGATTGAAGCTACGACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * * * *
34038231 TAATTTCCC-CGACATTGCAAT-TAAAAGATTAAAGCCACAACGACGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * * * * * * ** **
34038280 TTACTTCCCT-GGCAGTGTAGTGGAATAGATTAAAGTCGTAACGGCAAATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * ** *
34038330 TTGTTTCCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * * ** * * *
34038380 TTATTTCCCTAG-CGGTGCAGTGGAGTAGATTGAAGCTACGACGGCGGATA
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
** * ** *
34038430 TGGTTTCCC-CGACATTGCAATTAAAAAGATTAAAGCCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * * * ** *
34038480 TTATTTCTCT-GACGGTGCAGTAGAGTAGATTGAAGTCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
** * * **
34038530 TGGTTT-CCTCGACAGCGTAATTAAAAAGATTGAAGCCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * * * ** *
34038580 TTACTTCCCT-GGCGGTACAATGGAGCAGATTGAAGTCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
** ** **
34038630 TGGTTT-CCTCGACAACGCAATTAAAAAGATTGAAGCCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
* * * * * * * *
34038680 TTACTTCCGT-GGCGGTGCAGT-GAAGCAGATCGAAGTCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAA-AAGATTGAAGCCACAACGGCGGATC
** * **
34038730 TGGTTTCCC-CGACAGCGCAATTCAAAAGATTGAAGCCACAACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
** * * * * * * * *
34038780 TTACCTCCTTAG-CGGTGCAGTTGAACAGATTGAAGCTACGACGGCGGATC
1 TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
*
34038830 TTGTTT-CCTCGACA
1 TTATTTCCCTCGACA
34038844 TTGTAATTGG
Statistics
Matches: 620, Mismatches: 221, Indels: 42
0.70 0.25 0.05
Matches are distributed among these distances:
49 83 0.13
50 527 0.85
51 10 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (51 bp):
TTATTTCCCTCGACAGTGCAATGGAAAAGATTGAAGCCACAACGGCGGATC
Found at i:34038864 original size:100 final size:100
Alignment explanation
Indices: 34037935--34038851 Score: 1186
Period size: 100 Copynumber: 9.2 Consensus size: 100
34037925 CAGATTTTTA
*
34037935 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGAACTTATTTCCCTAGCGGTGC
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
* *
34038000 AGTGGAGCAGATTGAAGCTATGACGGCGAATCTGG
66 AGTGGAGCAGATTGAAGCTACGACGGCGGATCTGG
* * * *
34038035 TTTCCCTGACATTGCAATT-AAAAGATTGAAGCCACAACGACGGATCTTATTTCCCTGGCAGTGC
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
34038099 AGTGGAGCAGATTGAAGCTACGACGGCGGATCTGG
66 AGTGGAGCAGATTGAAGCTACGACGGCGGATCTGG
34038134 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCT-GACGGTG
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAG-CGGTG
**
34038198 CAGTGGAGCAGATTGAAGCTACGACGGCGGATCTAA
65 CAGTGGAGCAGATTGAAGCTACGACGGCGGATCTGG
* * * * * *
34038234 TTTCCCCGACATTGCAATT-AAAAGATTAAAGCCACAACGACGGATCTTACTTCCCTGGCAGTGT
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
** * ** *
34038298 AGTGGAATAGATTAAAG-T-CGTAACGGCAAATCTTG
66 AGTGGAGCAGATTGAAGCTACG--ACGGCGGATCTGG
*
34038333 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGGATCTTATTTCCCTAGCGGTGC
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
* *
34038398 AGTGGAGTAGATTGAAGCTACGACGGCGGATATGG
66 AGTGGAGCAGATTGAAGCTACGACGGCGGATCTGG
* *
34038433 TTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGGCGGATCTTATTTCTCT-GACGGTG
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAG-CGGTG
* * *
34038497 CAGTAGAGTAGATTGAAG-TCACAACGGCGGATCTGG
65 CAGTGGAGCAGATTGAAGCT-ACGACGGCGGATCTGG
* ** * * * *
34038533 TTTCCTCGACAGCGTAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTAC
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
* *
34038598 AATGGAGCAGATTGAAG-TCACAACGGCGGATCTGG
66 AGTGGAGCAGATTGAAGCT-ACGACGGCGGATCTGG
* ** * * *
34038633 TTTCCTCGACAACGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCGTGGCGGTGC
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
* * *
34038698 AGTGAAGCAGATCGAAG-TCACAACGGCGGATCTGG
66 AGTGGAGCAGATTGAAGCT-ACGACGGCGGATCTGG
** * ** *
34038733 TTTCCCCGACAGCGCAATTCAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGCGGTGC
1 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
* * *
34038798 AGTTGAACAGATTGAAGCTACGACGGCGGATCTTG
66 AGTGGAGCAGATTGAAGCTACGACGGCGGATCTGG
* *
34038833 TTTCCTCGACATTGTAATT
1 TTTCCCCGACATTGCAATT
34038852 GGATAAATTG
Statistics
Matches: 728, Mismatches: 77, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
97 2 0.00
98 1 0.00
99 175 0.24
100 545 0.75
101 3 0.00
102 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (100 bp):
TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTAGCGGTGC
AGTGGAGCAGATTGAAGCTACGACGGCGGATCTGG
Found at i:34040251 original size:4 final size:4
Alignment explanation
Indices: 34040239--34040273 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
34040229 ATTTGTTTTT
*
34040239 TTTA GTTA TTTA TTTA TTTA TTTA TTTA TTATA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT
34040274 GTTTATATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:34040482 original size:17 final size:17
Alignment explanation
Indices: 34040440--34040482 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
34040430 ATAGTTTATA
34040440 TATATTTTATATACATT
1 TATATTTTATATACATT
* * *
34040457 CATATTTTTTATGATATT
1 TATATTTTATAT-ACATT
34040475 TATATTTT
1 TATATTTT
34040483 CATGTTTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (17 bp):
TATATTTTATATACATT
Found at i:34041915 original size:46 final size:44
Alignment explanation
Indices: 34041856--34041970 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
34041846 ACAGGACAGA
* *
34041856 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
34041902 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
34041946 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
34041971 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:34041951 original size:44 final size:45
Alignment explanation
Indices: 34041856--34041989 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
34041846 ACAGGACAGA
* *
34041856 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
34041902 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
34041946 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
34041990 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:34047031 original size:5 final size:5
Alignment explanation
Indices: 34047021--34047092 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
34047011 TGTTAAAAAA
* *
34047021 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
34047067 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
34047093 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:34047074 original size:19 final size:19
Alignment explanation
Indices: 34047050--34047092 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
34047040 ATTATGTTTT
34047050 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
34047069 TATATTATATTATATTATA
1 TATATTATATTATATTATA
34047088 TATAT
1 TATAT
34047093 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:34048154 original size:46 final size:44
Alignment explanation
Indices: 34048095--34048209 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
34048085 ACAGGACAGA
* *
34048095 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
34048141 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
34048185 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
34048210 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:34048190 original size:44 final size:45
Alignment explanation
Indices: 34048095--34048228 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
34048085 ACAGGACAGA
* *
34048095 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
34048141 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
34048185 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
34048229 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:34052006 original size:31 final size:31
Alignment explanation
Indices: 34051981--34052076 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
34051971 AATAGCCTAG
34051981 TGACTTAAATAAAAACTTTCGAATAGTCCAA
1 TGACTTAAATAAAAACTTTCGAATAGTCCAA
34052012 TGACTTAAATAAAAACTTTCGAATAGTCCAA
1 TGACTTAAATAAAAACTTTCGAATAGTCCAA
* * * *
34052043 TGACTTAAATGAATACTTTCAAATAGTTCAA
1 TGACTTAAATAAAAACTTTCGAATAGTCCAA
34052074 TGA
1 TGA
34052077 TAATTTTATA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCGAATAGTCCAA
Found at i:34056017 original size:22 final size:22
Alignment explanation
Indices: 34055977--34056040 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
34055967 CTAGAAATTT
* *
34055977 TATAATTTTTTTAACTTTTTTG
1 TATAATTTTTATAATTTTTTTG
*
34055999 TATAATTTTTAGAATTTTTTTG
1 TATAATTTTTATAATTTTTTTG
* *
34056021 -AAAAATTTTATAATTTTTTT
1 TATAATTTTTATAATTTTTTT
34056041 AAAAAATAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
21 17 0.47
22 19 0.53
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (22 bp):
TATAATTTTTATAATTTTTTTG
Found at i:34056029 original size:21 final size:21
Alignment explanation
Indices: 34056005--34056047 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
34055995 TTTGTATAAT
*
34056005 TTTTAGAATTTTTTTGAAAAA
1 TTTTAGAATTTTTTTAAAAAA
*
34056026 TTTTATAATTTTTTTAAAAAA
1 TTTTAGAATTTTTTTAAAAAA
34056047 T
1 T
34056048 AAAAAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
TTTTAGAATTTTTTTAAAAAA
Found at i:34057764 original size:33 final size:33
Alignment explanation
Indices: 34057718--34057784 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
34057708 GTTATAGAGG
34057718 GTGCCCGGAAACTGTTCGAGAATGGTTCCGAAC
1 GTGCCCGGAAACTGTTCGAGAATGGTTCCGAAC
*
34057751 GTGCCCGGGAACTGTTCGAGAATGGTTCCGAAC
1 GTGCCCGGAAACTGTTCGAGAATGGTTCCGAAC
34057784 G
1 G
34057785 AGTTAAAGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (33 bp):
GTGCCCGGAAACTGTTCGAGAATGGTTCCGAAC
Found at i:34060393 original size:20 final size:21
Alignment explanation
Indices: 34060348--34060393 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
34060338 TTTCGTCTCA
34060348 TTTTACTAAATAATGTATGAT
1 TTTTACTAAATAATGTATGAT
* *
34060369 GTTTAGTAAA-AATGTGAT-AT
1 TTTTACTAAATAATGT-ATGAT
34060389 TTTTA
1 TTTTA
34060394 ATGGTTGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (21 bp):
TTTTACTAAATAATGTATGAT
Found at i:34067512 original size:28 final size:27
Alignment explanation
Indices: 34067481--34067561 Score: 117
Period size: 28 Copynumber: 2.9 Consensus size: 27
34067471 AAATAAACTC
34067481 CAAAAATAAAAACTCTAAAGTCAAACCT
1 CAAAAATAAAAA-TCTAAAGTCAAACCT
* *
34067509 CAAAAATGAAAATACTAAAGTCAAACTT
1 CAAAAATAAAAAT-CTAAAGTCAAACCT
34067537 CAAAAATAAAAAATCTAAAGTCAAA
1 CAAAAAT-AAAAATCTAAAGTCAAA
34067562 TAACACTAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
27 1 0.02
28 42 0.88
29 5 0.10
ACGTcount: A:0.60, C:0.16, G:0.05, T:0.19
Consensus pattern (27 bp):
CAAAAATAAAAATCTAAAGTCAAACCT
Found at i:34068422 original size:29 final size:30
Alignment explanation
Indices: 34068377--34068435 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
34068367 GAATCGGATC
34068377 AAATCAAAATTTCATGTATAAAATTACACA
1 AAATCAAAATTTCATGTATAAAATTACACA
* *
34068407 AAATCAAAGTTT-ATGTATACAATTACACA
1 AAATCAAAATTTCATGTATAAAATTACACA
34068436 TTAAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATCAAAATTTCATGTATAAAATTACACA
Found at i:34068459 original size:29 final size:28
Alignment explanation
Indices: 34068387--34068457 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
34068377 AAATCAAAAT
*
34068387 TTCATGTATAAAATTACACAAAATCAAAG
1 TTCATGTAT-AAATTACACAAAACCAAAG
* *
34068416 TTTATGTATACAATTACACATTAAACCATAG
1 TTCATGTATA-AATTACACA--AAACCAAAG
34068447 TTCATGTATAA
1 TTCATGTATAA
34068458 TTTTGATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 1 0.03
29 17 0.49
30 1 0.03
31 16 0.46
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (28 bp):
TTCATGTATAAATTACACAAAACCAAAG
Found at i:34072995 original size:39 final size:39
Alignment explanation
Indices: 34072941--34073022 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
34072931 ATAGATGTTC
34072941 AAATCTAAACCCTTTTAATACCAGATGCAGCACATCCCT
1 AAATCTAAACCCTTTTAATACCAGATGCAGCACATCCCT
* *
34072980 AAATCTAAATCCTTTTAATACCAGATGCAGCACATTCCT
1 AAATCTAAACCCTTTTAATACCAGATGCAGCACATCCCT
34073019 AAAT
1 AAAT
34073023 TAAGGACGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.28
Consensus pattern (39 bp):
AAATCTAAACCCTTTTAATACCAGATGCAGCACATCCCT
Found at i:34079256 original size:25 final size:24
Alignment explanation
Indices: 34079219--34079267 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
34079209 CAATAACCTG
* *
34079219 AACCGTTATTGAAATCATCAAACT
1 AACCGCTACTGAAATCATCAAACT
*
34079243 NAACCGCTACTGAAATCATCGAACT
1 -AACCGCTACTGAAATCATCAAACT
34079268 CGCCGTATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.24
Consensus pattern (24 bp):
AACCGCTACTGAAATCATCAAACT
Found at i:34082611 original size:5 final size:6
Alignment explanation
Indices: 34082595--34082619 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
34082585 TCAATCCACA
34082595 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
34082620 CACATTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:34086249 original size:18 final size:18
Alignment explanation
Indices: 34086228--34086289 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 18
34086218 GCAATTATAT
34086228 ATAAAAATAATAATTAAG
1 ATAAAAATAATAATTAAG
* * **
34086246 ATAAAAATATTAAATATT
1 ATAAAAATAATAATTAAG
*
34086264 ATATAAA-AATAATTAAG
1 ATAAAAATAATAATTAAG
34086281 ATAAAAATA
1 ATAAAAATA
34086290 TTAAAATTTA
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
ATAAAAATAATAATTAAG
Found at i:34086282 original size:35 final size:36
Alignment explanation
Indices: 34086227--34086294 Score: 120
Period size: 35 Copynumber: 1.9 Consensus size: 36
34086217 TGCAATTATA
34086227 TATAAAAATAATAATTAAGATAAAAATATTAAATAT
1 TATAAAAATAATAATTAAGATAAAAATATTAAATAT
*
34086263 TATATAAA-AATAATTAAGATAAAAATATTAAA
1 TATAAAAATAATAATTAAGATAAAAATATTAAA
34086295 ATTTAGTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 24 0.77
36 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (36 bp):
TATAAAAATAATAATTAAGATAAAAATATTAAATAT
Found at i:34089923 original size:31 final size:30
Alignment explanation
Indices: 34089888--34089945 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
34089878 ATAAAGATTT
*
34089888 AATAGCCTAGTGATTTAAATAAAAACTTTTG
1 AATAG-CTAGTGACTTAAATAAAAACTTTTG
* *
34089919 AATAGTTAGTGACTTAAATGAAAACTT
1 AATAGCTAGTGACTTAAATAAAAACTT
34089946 CCAAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (30 bp):
AATAGCTAGTGACTTAAATAAAAACTTTTG
Found at i:34095747 original size:42 final size:43
Alignment explanation
Indices: 34095638--34095804 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
34095628 AGCTCGTACA
* * * * * * *
34095638 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCA-AATAACA
1 ATGCCAATGTCCCAGACATAGTCTTACACGAAATCATAA-ATCG
*
34095681 ATGCCACTGTCCCAGACA-AGGTCTTACACGAAATCATAAAT-G
1 ATGCCAATGTCCCAGACATA-GTCTTACACGAAATCATAAATCG
* *
34095723 ATGCCAATGTCCCAAACATAGTCTTACACGTAAATCTTAAATCG
1 ATGCCAATGTCCCAGACATAGTCTTACACG-AAATCATAAATCG
* * * *
34095767 ACGCCAACGTCCCAGACGTGGTCTTACACGAAATCATA
1 ATGCCAATGTCCCAGACATAGTCTTACACGAAATCATA
34095805 TATCAGAATC
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 26 0.25
43 48 0.47
44 28 0.27
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATAGTCTTACACGAAATCATAAATCG
Found at i:34095779 original size:44 final size:42
Alignment explanation
Indices: 34095701--34095804 Score: 136
Period size: 44 Copynumber: 2.4 Consensus size: 42
34095691 CCCAGACAAG
* *
34095701 GTCTTACACGAAATCATAAATGATGCCAATGTCCCAAACATA
1 GTCTTACACGAAATCATAAATGACGCCAACGTCCCAAACATA
* * * *
34095743 GTCTTACACGTAAATCTTAAATCGACGCCAACGTCCCAGACGTG
1 GTCTTACACG-AAATCATAAAT-GACGCCAACGTCCCAAACATA
34095787 GTCTTACACGAAATCATA
1 GTCTTACACGAAATCATA
34095805 TATCAGAATC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 10 0.19
43 17 0.32
44 26 0.49
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (42 bp):
GTCTTACACGAAATCATAAATGACGCCAACGTCCCAAACATA
Found at i:34099572 original size:3 final size:3
Alignment explanation
Indices: 34099564--34099632 Score: 72
Period size: 3 Copynumber: 23.0 Consensus size: 3
34099554 AGCTATTATG
* *
34099564 TAA TAA TAA TAA T-A TGA TAA GTAA CAA TAA T-A TAA TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA T-AA TAA TAA
34099609 TAA TAGA -AA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA
34099633 AATTACTGAA
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
2 5 0.09
3 45 0.79
4 7 0.12
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:34123343 original size:16 final size:16
Alignment explanation
Indices: 34123322--34123352 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34123312 TTGCAATTAT
34123322 ATGGTTGTTGCTGGTG
1 ATGGTTGTTGCTGGTG
*
34123338 ATGGTTGTTGTTGGT
1 ATGGTTGTTGCTGGT
34123353 AATCATCATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.03, G:0.42, T:0.48
Consensus pattern (16 bp):
ATGGTTGTTGCTGGTG
Found at i:34127205 original size:20 final size:20
Alignment explanation
Indices: 34127167--34127205 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
34127157 TATAGATGAA
***
34127167 TTACTGTTGATATGTATAAG
1 TTACTGTTGATACAAATAAG
34127187 TTACTGTTGATACAAATAA
1 TTACTGTTGATACAAATAA
34127206 ATTTCTATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (20 bp):
TTACTGTTGATACAAATAAG
Found at i:34128382 original size:15 final size:15
Alignment explanation
Indices: 34128362--34128394 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
34128352 GATTTGAGAG
34128362 ATGAAATGGATGT-AT
1 ATGAAATGG-TGTAAT
34128377 ATGAAATGGTGTAAT
1 ATGAAATGGTGTAAT
34128392 ATG
1 ATG
34128395 TGTATTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (15 bp):
ATGAAATGGTGTAAT
Found at i:34135118 original size:44 final size:45
Alignment explanation
Indices: 34135070--34136061 Score: 334
Period size: 44 Copynumber: 22.8 Consensus size: 45
34135060 AGGAACTAGT
* *
34135070 GCTTTAATCTACTCCACTGCAACTTCAGGGAGATAGGA-TTGTCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * *
34135114 GCTTTAATCTGCTCCACTGCAATTTCAGGGAGATAAGATTTGTCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * * *
34135159 TCTTTAGTCTGC-CTCGCTGCAACTTCA-GGAGGATAAGACTTG-CT
1 GCTTTAATCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGTCG
*** * * *
34135203 TAATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA---ATAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * * * * **
34135245 G-TGTGATCTGCT-CTCTGCAACTTTAGAGAGATAAGA-TCT-AAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGTCG
* * * * *
34135287 GTTTTAATCT-ATCCACTGCAACTTCAGCGAGAT-AGAATTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * * * * *
34135330 GTTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGCCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * * *
34135375 TCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTG-CTT
1 GCTTTAATCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGTC-G
* * * * *
34135420 AC-TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * * *
34135464 TCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTG-CTT
1 GCTTTAATCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGTC-G
* * * * *
34135509 AC-TTAGTCTGCTCCACTGCAACTTTAGGGAAATAAGACTAGAT--
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TCG
* * * **
34135552 GC---GATCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TCT-AAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGTCG
* * * * *
34135592 GTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGA-TTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * *
34135636 GCTTTAATCTGCTCCACTGTAACTTCAGAGAGATAAGAC-CGATC-
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TCG
* ** * * * * *
34135680 -ATTCTAATCCACTCCTCCT-CAACTTTAGGGAGATAGGATTTATTC-
1 GCTT-TAATCTGCTCC-ACTGCAACTTCAGGGAGATAAGACTT-GTCG
* * * * **
34135725 -ATTCAGTCTGAC-CCACTGCAATTTCAGGGAGATAAGACCAGAT--
1 GCTTTAATCTG-CTCCACTGCAACTTCAGGGAGATAAGACTTG-TCG
* * * * ****
34135768 GC---GATCTGCT-CTCTGCAACTTTAGAGAGATAAGA-TCCAAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * * * * *
34135808 GTTTTAATCCGCTCCTCCT-CAACTTTAGGGAGATAGGATTTGTTC-
1 GCTTTAATCTGCTCC-ACTGCAACTTCAGGGAGATAAGACTTG-TCG
* * * * * * *
34135853 -ATTCAATCTGCCCCACAGCAATTTCAGGGGGATAAGACTT-TCTT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTC-G
* * * * **
34135897 AC-TCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACCAGAT--
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TCG
* * * * ****
34135940 GC---GATCTACT-CTCTGCAACTTCAGAGAGATAAGA-TCCAAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
* * * * *
34135980 GTTTTAATCCGCTCCTCTGCAACTTCAGGGAGATAGGA-TTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
34136024 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
34136062 TTTGCCATCT
Statistics
Matches: 704, Mismatches: 175, Indels: 138
0.69 0.17 0.14
Matches are distributed among these distances:
39 1 0.00
40 88 0.12
41 22 0.03
42 10 0.01
43 60 0.09
44 392 0.56
45 130 0.18
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCG
Found at i:34135395 original size:172 final size:170
Alignment explanation
Indices: 34135116--34136087 Score: 592
Period size: 172 Copynumber: 5.6 Consensus size: 170
34135106 GATTGTCGGC
* * * * * * *
34135116 TTTAATCTGCTCCACTGCAATTTCAGGGAGATAAGATTTGTC-ATCTTTAGTCTGC-CTCGCTGC
1 TTTAATCT-CTCCACTGCAACTTCAGGGAGAT-AGAATTATCGGT-TTTAATCTGCTC-CACTAC
* * * *
34135179 AACTTCA-GGAGGATAAGACTTGCTTAATT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGAA
62 AACTTCAGGGA-GATAAGATTTGCAT-CTTCAGTCTGCT-CACTGCAACTTCAGGGAGATAAGAC
*
34135242 TAGGTGTGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTAAGGT
124 TAGATGTGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTAAGGT
* *
34135289 TTTAATCTATCCACTGCAACTTCAGCGAGATAGAATTATCGGTTTTAATCTGCTCCACTACAACT
1 TTTAATCTCTCCACTGCAACTTCAGGGAGATAGAATTATCGGTTTTAATCTGCTCCACTACAACT
* *
34135354 TCAGGGAAATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA-GGAGGATAAGACTTGC
66 TCAGGGAGATAAGATTTG-CATCTTCAGTCTG-CTCACTGCAACTTCAGGGA-GATAAGACTAG-
* * * * * * * ****
34135418 TTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
127 AT-GTGA-TCTGCT-CTCTGCAACTTTAGAGAGATAAGATCTAAGGT
* * * * *
34135465 CTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATA-AGACT-T-GCTTACTTAGTCTGCTCCAC
1 -TTTAATCT-CTC-CACTGCAACTTCAGGGA-GATAGA-ATTATCGGTT--TTAATCTGCTCCAC
* * * * * * * *
34135525 TGCAACTTTAGGGAAATAAGACTAG-A--TGC-GATCTGCTCTCTGCAACTTCAGAGAGATAAGA
59 TACAACTTCAGGGAGATAAGATTTGCATCTTCAG-TCTGCTCACTGCAACTTCAGGGAGATAAGA
* * * * * * * * *
34135586 TCTAAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGAT-TATCGGC
123 -CT-A-GATGTGATCTGCT-CTCTGCAACTTTAGAGAGATAAGATCTA-AGGT
* * *** * * ** *
34135638 TTTAATCTGCTCCACTGTAACTTCAGAGAGATAAGACCGATC-ATTCTAATCCACTCCTCCT-CA
1 TTTAATCT-CTCCACTGCAACTTCAGGGAGAT-AGAATTATCGGTTTTAATCTGCTCC-ACTACA
* * * * *
34135701 ACTTTAGGGAGATAGGATTT--ATTCATTCAGTCTGACCCACTGCAATTTCAGGGAGATAAGACC
63 ACTTCAGGGAGATAAGATTTGCA-TC-TTCAGTCTG-CTCACTGCAACTTCAGGGAGATAAGACT
* *
34135764 AGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCCAAGGT
125 AGATGTGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTAAGGT
* * * * *
34135810 TTTAATCCGCTCCTCCT-CAACTTTAGGGAGATAGGATT-T--GTTCATTCAATCTGCCCCAC-A
1 TTTAAT-CTCTCC-ACTGCAACTTCAGGGAGATAGAATTATCGGTT--TT-AATCTGCTCCACTA
* * * *
34135870 GCAATTTCAGGGGGATAAGACTTT-CTTAC-TCAGTCTGCTCCACTGCAACTTCAGAGAGATAAG
61 -CAACTTCAGGGAGATAAGA-TTTGCAT-CTTCAGTCTGCT-CACTGCAACTTCAGGGAGATAAG
* * * * *
34135933 ACCAGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGT
122 ACTAGATGTGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTAAGGT
* * * * *
34135982 TTTAATCCGCTCCTCTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
1 TTTAAT-CTCTCCACTGCAACTTCAGGGAGATAGAATTATCGGTTTTAATCTGCTCCACTACAAC
34136047 TTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCTTCACTG
65 TTCAGGGAGATAAGATTTG-CATCTTCAGTCTGC-TCACTG
34136088 TCGATGCAAG
Statistics
Matches: 625, Mismatches: 116, Indels: 116
0.73 0.14 0.14
Matches are distributed among these distances:
169 2 0.00
170 1 0.00
171 52 0.08
172 311 0.50
173 105 0.17
174 21 0.03
175 17 0.03
176 52 0.08
177 11 0.02
178 53 0.08
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (170 bp):
TTTAATCTCTCCACTGCAACTTCAGGGAGATAGAATTATCGGTTTTAATCTGCTCCACTACAACT
TCAGGGAGATAAGATTTGCATCTTCAGTCTGCTCACTGCAACTTCAGGGAGATAAGACTAGATGT
GATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTAAGGT
Found at i:34135401 original size:89 final size:88
Alignment explanation
Indices: 34135333--34135545 Score: 354
Period size: 89 Copynumber: 2.4 Consensus size: 88
34135323 ATTATCGGTT
34135333 TTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAAC
1 TTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAAC
34135398 TTCAGGAGGATAAGACTTGCTTA
66 TTCAGGAGGATAAGACTTGCTTA
* * *
34135421 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
1 -TTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
34135486 CTTCAGGAGGATAAGACTTGCTTA
65 CTTCAGGAGGATAAGACTTGCTTA
* * *
34135510 CTTAGTCTGCTCCACTGCAACTTTAGGGAAATAAGA
1 -TTAATCTGCTCCACTACAACTTCAGGGAAATAAGA
34135546 CTAGATGCGA
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 119 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (88 bp):
TTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAAC
TTCAGGAGGATAAGACTTGCTTA
Found at i:34135743 original size:305 final size:302
Alignment explanation
Indices: 34135121--34135761 Score: 866
Period size: 305 Copynumber: 2.1 Consensus size: 302
34135111 TCGGCTTTAA
* * *
34135121 TCTGCTCCACTGCAATTTCAGGGAGATAAGATTTGTCATCTTTAGTCTGCCTCGCTGCAACTTCA
1 TCTGCTCCACTGCAATTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
* * *
34135186 GGAGGATAAGACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAATAGGTGTGA
66 GGAGGATAAGACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGAATAGATGCGA
* *
34135251 TCTGCTCTCTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCTATCCACTGCAACTTCAGCG
131 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCGATCCACTGCAACTTCAGCG
* *
34135316 AGATAGAATTATCGGTTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGCCATCTTCA
196 AGATAGAATTATCGGCTTTAATCTGCTCCACTACAACTTCAGAGAAATAAGA--T-CCATCTTCA
* *
34135381 GTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
258 ATCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGATTACTTAG
*
34135426 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
1 TCTGCTCCACTGCAATTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
* * *
34135491 GGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTTAGGGAAATAAGACTAGATGCGA
66 GGAGGATAAGACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGAATAGATGCGA
* * *
34135556 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTTAGG
131 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAAT-CGATCCACTGCAACTTCAGC
* ** *
34135621 GAGATAGGATTATCGGCTTTAATCTGCTCCACTGTAACTTCAGAGAGATAAGA-CCGATCATTCT
195 GAGATAGAATTATCGGCTTTAATCTGCTCCACTACAACTTCAGAGAAATAAGATCC-ATC-TTC-
* * *
34135685 AATCCACT-CCTC-CT-CAACTTTAGG-GAGATAGGA-TTTATT-CATTCAG
257 AAT---CTGCCTCACTGCAACTTCAGGAG-GATAAGACTTGATTAC-TT-AG
34135731 TCTGAC-CCACTGCAATTTCAGGGAGATAAGA
1 TCTG-CTCCACTGCAATTTCAGGGAGATAAGA
34135762 CCAGATGCGA
Statistics
Matches: 298, Mismatches: 27, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
302 2 0.01
303 4 0.01
304 10 0.03
305 210 0.70
306 66 0.22
307 4 0.01
308 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (302 bp):
TCTGCTCCACTGCAATTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
GGAGGATAAGACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGAATAGATGCGA
TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCGATCCACTGCAACTTCAGCG
AGATAGAATTATCGGCTTTAATCTGCTCCACTACAACTTCAGAGAAATAAGATCCATCTTCAATC
TGCCTCACTGCAACTTCAGGAGGATAAGACTTGATTACTTAG
Found at i:34135838 original size:84 final size:85
Alignment explanation
Indices: 34135740--34136014 Score: 233
Period size: 84 Copynumber: 3.2 Consensus size: 85
34135730 GTCTGACCCA
*
34135740 CTGCAATTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCC
1 CTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCC
34135805 AAGGTTTTAATCCGCTCCTC
66 AAGGTTTTAATCCGCTCCTC
* * *** * * * * * * *
34135825 CT-CAACTTTAGGGAGATAGGATTTGTTCATTCAATCTGCCCCACAGCAA-TTTCAGGGGGATAA
1 CTGCAACTTCAGGGAGATAAGACCAG---ATGCGATCTG-CTCTCTGCAACTTT-AGAGAGATAA
* * * *
34135888 GA--C---TTTCTTACTCAGTCTGCTCC
61 GATCCAAGGTT-TTAATCCG-CTCCT-C
* * *
34135911 ACTGCAACTTCAGAGAGATAAGACCAGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATC
1 -CTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATC
34135976 CAAGGTTTTAATCCGCTCCT-
65 CAAGGTTTTAATCCGCTCCTC
34135996 CTGCAACTTCAGGGAGATA
1 CTGCAACTTCAGGGAGATA
34136015 GGATTATCGG
Statistics
Matches: 137, Mismatches: 37, Indels: 33
0.66 0.18 0.16
Matches are distributed among these distances:
83 2 0.01
84 58 0.42
85 15 0.11
86 3 0.02
87 17 0.12
88 40 0.29
89 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (85 bp):
CTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCC
AAGGTTTTAATCCGCTCCTC
Found at i:34137310 original size:11 final size:11
Alignment explanation
Indices: 34137285--34137319 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
34137275 GGCCTCTCCA
34137285 TTTTCTTTCTTC
1 TTTTCTTT-TTC
34137297 TTTTCTTTTTC
1 TTTTCTTTTTC
34137308 TTTTCTTTTTC
1 TTTTCTTTTTC
34137319 T
1 T
34137320 GAAATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 15 0.65
12 8 0.35
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:34144651 original size:31 final size:31
Alignment explanation
Indices: 34144595--34144660 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
34144585 AAGAGTCCAA
*
34144595 TGACTTAAATAAAACCTTCTAAATAGCTCAG
1 TGACTTAAATAAAAACTTCTAAATAGCTCAG
* * * *
34144626 TGACTTAAATAAAAATTTTTGAATAGTTCAG
1 TGACTTAAATAAAAACTTCTAAATAGCTCAG
34144657 TGAC
1 TGAC
34144661 AATTTTATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTCTAAATAGCTCAG
Found at i:34145997 original size:29 final size:30
Alignment explanation
Indices: 34145962--34146164 Score: 162
Period size: 30 Copynumber: 6.7 Consensus size: 30
34145952 TAAACCTTTC
* *
34145962 AAAATTTTGAAAAATTTTAATTAGA-CTCTT
1 AAAATTTT-AAAAATTTTAATTAAATCTCTA
* * *
34145992 AAATTTTTTAGAATTTTAATTAAA-C-CTA
1 AAAATTTTAAAAATTTTAATTAAATCTCTA
*
34146020 CAAAAGTTTTAAAAATTTTAATTAAAGCTCTA
1 -AAAA-TTTTAAAAATTTTAATTAAATCTCTA
* * * * * *
34146052 TAAGTTTTAGAAATTTTCATTAATTCTCTC
1 AAAATTTTAAAAATTTTAATTAAATCTCTA
*
34146082 AAAATTCTTAAAAATTTTAATTAAA-CCCTA
1 AAAATT-TTAAAAATTTTAATTAAATCTCTA
* * * * *
34146112 AAAATTTAAAAAATTCTCATTAAACCCCTCA
1 AAAATTTTAAAAATTTTAATTAAATCTCT-A
*
34146143 AAAATTATAAAAATTTTAATTA
1 AAAATTTTAAAAATTTTAATTA
34146165 GATGCTTACA
Statistics
Matches: 137, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
28 2 0.01
29 32 0.23
30 63 0.46
31 37 0.27
32 3 0.02
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.40
Consensus pattern (30 bp):
AAAATTTTAAAAATTTTAATTAAATCTCTA
Found at i:34146017 original size:60 final size:60
Alignment explanation
Indices: 34145946--34146180 Score: 203
Period size: 60 Copynumber: 3.9 Consensus size: 60
34145936 TTAAAAAGAG
* *
34145946 TTTCATTAAACCTTTCAAAATTTTGAAAAATTTTAATTAGACTCTTA-AATTTTTTAGAAT
1 TTTCATTAAACCTCTCAAAATTTT-AAAAATTTTAATTAAACTCTTACAATTTTTTAGAAT
* * * *
34146006 TTTAATTAAACCT-ACAAAAGTTTTAAAAATTTTAATTAAAGCTC-TATAA-GTTTTAGAAAT
1 TTTCATTAAACCTCTCAAAA-TTTTAAAAATTTTAATTAAA-CTCTTACAATTTTTTAG-AAT
** * * * ** *
34146066 TTTCATTAATTCTCTCAAAATTCTTAAAAATTTTAATTAAAC-CCTAAAAATTTAAAAAAT
1 TTTCATTAAACCTCTCAAAATT-TTAAAAATTTTAATTAAACTCTTACAATTTTTTAGAAT
* * * *
34146126 TCTCATTAAACCCCTCAAAAATTATAAAAATTTTAATTAGA-TGCTTACAATTTTT
1 TTTCATTAAACCTCTC-AAAATTTTAAAAATTTTAATTAAACT-CTTACAATTTTT
34146181 ATTAAGTTTT
Statistics
Matches: 141, Mismatches: 23, Indels: 21
0.76 0.12 0.11
Matches are distributed among these distances:
59 29 0.21
60 72 0.51
61 40 0.28
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.42
Consensus pattern (60 bp):
TTTCATTAAACCTCTCAAAATTTTAAAAATTTTAATTAAACTCTTACAATTTTTTAGAAT
Found at i:34146039 original size:30 final size:28
Alignment explanation
Indices: 34145932--34146164 Score: 160
Period size: 30 Copynumber: 7.8 Consensus size: 28
34145922 GGAGCCTTAC
* * *
34145932 AAATTTAAAAAGAGTTTCATTAAACCTTTCA
1 AAATTTTAAAA-ATTTTAATTAAACC--TCA
* *
34145963 AAATTTTGAAAAATTTTAATTAGACTCTTA
1 AAATTTT-AAAAATTTTAATTAAAC-CTCA
* * *
34145993 AATTTTTTAGAATTTTAATTAAACCTACA
1 AAATTTTAAAAATTTTAATTAAACCT-CA
*
34146022 AAAGTTTTAAAAATTTTAATTAAAGCTCTA
1 AAA-TTTTAAAAATTTTAATTAAACCTC-A
* * * *
34146052 TAAGTTTTAGAAATTTTCATTAATTCTCTCA
1 -AAATTTTAAAAATTTTAATTAA-AC-CTCA
*
34146083 AAATTCTTAAAAATTTTAATTAAACCCTAA
1 AAATT-TTAAAAATTTTAATTAAA-CCTCA
* * *
34146113 AAATTTAAAAAATTCTCATTAAACCCCTCAA
1 AAATTTTAAAAATTTTAATTAAA--CCTC-A
*
34146144 AAATTATAAAAATTTTAATTA
1 AAATTTTAAAAATTTTAATTA
34146165 GATGCTTACA
Statistics
Matches: 158, Mismatches: 32, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
28 2 0.01
29 33 0.21
30 62 0.39
31 53 0.34
32 8 0.05
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (28 bp):
AAATTTTAAAAATTTTAATTAAACCTCA
Found at i:34146156 original size:31 final size:28
Alignment explanation
Indices: 34146089--34146164 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 28
34146079 CTCAAAATTC
*
34146089 TTAAAAATTTTAATTAAACCCTAAAAAT
1 TTAAAAATTCTAATTAAACCCTAAAAAT
*
34146117 TTAAAAAATTCTCATTAAACCCCTCAAAAAT
1 TT-AAAAATTCTAATTAAA-CCCT-AAAAAT
*
34146148 TATAAAAATTTTAATTA
1 T-TAAAAATTCTAATTA
34146165 GATGCTTACA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 2 0.05
29 14 0.35
30 4 0.10
31 19 0.47
32 1 0.03
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (28 bp):
TTAAAAATTCTAATTAAACCCTAAAAAT
Found at i:34152205 original size:11 final size:13
Alignment explanation
Indices: 34152177--34152205 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
34152167 TACAAACAAT
34152177 TATATTAATCGAA
1 TATATTAATCGAA
34152190 TATATTAATCGAA
1 TATATTAATCGAA
34152203 TAT
1 TAT
34152206 GAAAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TATATTAATCGAA
Found at i:34155280 original size:26 final size:26
Alignment explanation
Indices: 34155244--34155296 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
34155234 TTTGGGGACT
34155244 AAGTTAGTTTATGAGTAAATCGAAGA
1 AAGTTAGTTTATGAGTAAATCGAAGA
34155270 AAGTTAGTTTATGAGTAAATCGAAGA
1 AAGTTAGTTTATGAGTAAATCGAAGA
34155296 A
1 A
34155297 GAAACAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.04, G:0.23, T:0.30
Consensus pattern (26 bp):
AAGTTAGTTTATGAGTAAATCGAAGA
Found at i:34156879 original size:11 final size:11
Alignment explanation
Indices: 34156865--34156973 Score: 51
Period size: 11 Copynumber: 9.6 Consensus size: 11
34156855 CAAATACCTT
*
34156865 TAAAATAATAG
1 TAAAATAATAA
34156876 TAAAATTAATAA
1 TAAAA-TAATAA
*
34156888 TAAAATAAAAA
1 TAAAATAATAA
* * *
34156899 TTATACAA-AA
1 TAAAATAATAA
*
34156909 TCTAAATAATAA
1 T-AAAATAATAA
* *
34156921 CAATAA-AATAG
1 TAA-AATAATAA
*
34156932 TAACGATATATAA
1 TAA-AATA-ATAA
* *
34156945 CAAAATAATAG
1 TAAAATAATAA
34156956 TAAAATAATAA
1 TAAAATAATAA
*
34156967 AAAAATA
1 TAAAATA
34156974 GCGACAAAAC
Statistics
Matches: 72, Mismatches: 20, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
10 3 0.04
11 46 0.64
12 18 0.25
13 5 0.07
ACGTcount: A:0.66, C:0.05, G:0.04, T:0.26
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:34157063 original size:13 final size:13
Alignment explanation
Indices: 34157045--34157080 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
34157035 AAAAGAATTT
34157045 TATTTTTTAAATA
1 TATTTTTTAAATA
*
34157058 TATTTTTTAAATT
1 TATTTTTTAAATA
34157071 TATATTTTTA
1 TAT-TTTTTA
34157081 CTCAAATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTTTTTAAATA
Found at i:34163781 original size:132 final size:132
Alignment explanation
Indices: 34163645--34164512 Score: 1450
Period size: 132 Copynumber: 6.6 Consensus size: 132
34163635 GCCAATACAT
* * * * * * **
34163645 GAAGACAAGATCTGCTTTCTTCGATCTACTTCCTACCAATATAGGAAGACAGAATTTGC-ATCTT
1 GAAGACAAGATCTGC-ATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTT
* * ** * *
34163709 CGATCTATTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATA
34163774 TGG
130 TGG
**
34163777 GAAGACAAGATCTATATCTTGGATCCACTTCCTATCAATAATAGGAAGATAGGACCTGCTATCTT
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAAT-ATAGGAAGATAGGACCTGCTATCTT
34163842 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATA
34163907 TGG
130 TGG
*
34163910 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACTTGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTC
34163975 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
34164040 GG
131 GG
*
34164042 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACTTGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTC
34164107 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
34164172 GG
131 GG
*
34164174 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCCATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTC
34164239 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
34164304 GG
131 GG
*
34164306 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACTTGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTC
** *
34164371 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
34164436 GG
131 GG
* * * * * *
34164438 GAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTC
34164503 GATCTACTTC
66 GATCTACTTC
34164513 TTGCCCCGGG
Statistics
Matches: 701, Mismatches: 33, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
131 20 0.03
132 577 0.82
133 104 0.15
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTC
GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATAT
GG
Found at i:34164135 original size:352 final size:351
Alignment explanation
Indices: 34163448--34164141 Score: 966
Period size: 352 Copynumber: 2.0 Consensus size: 351
34163438 CTGTTTTTCA
* *
34163448 ATCCACTTCCTACAAATATAGGAAGGCAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACAAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAT
**
34163513 GAAGACAAGACCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGACCTGCTTTCAACGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTT
* * * * *
34163578 TGATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTTGATCTACTTCATGCCAATAC
131 GGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
** * *
34163643 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCTACCAATATAGGAAGACAGAATTTGCATCT
196 ATGAAGACAAGATCTGCTTTCAACGATCTACTTCCCACCAATATAGGAAGACAGAATCTGCATCT
* * * * * * *
34163708 TCGATCTATTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGT
261 TCGATCCACTTCACACCAATACAGGAAGATAAGATCTGCTATCTTCGATCTACTTCGACACCAAT
**
34163773 ATGGGAAGACAAGATCTATATCTTGG
326 ACAGGAAGACAAGATCTATATCTTGG
*
34163799 ATCCACTTCCTATC-AATAATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
1 ATCCACTTCCTA-CAAAT-ATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
* * *
34163863 ATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATATGGGAAGACAAGATCTGCATC
64 ATGAAGACAAGACCTGCTTTCAACGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATC
* * *
34163928 TTGGATCCACTTCCTATCAATATAGGAAGATAGGACTTGCTATCTTCGATCTACTTCACGCCAAT
129 TTGGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAT
* *
34163993 ACATGAAGACAAGATCTGCTTTCAACGATCTACTTCGCCACTAATATGGGAAGACA-AGATCTGC
194 ACATGAAGACAAGATCTGCTTTCAACGATCTACTTC-CCACCAATATAGGAAGACAGA-ATCTGC
* * * *
34164057 ATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGA-CTTGCTATCTTCGATCTACTTC-AC
257 ATCTTCGATCCACTTCAC-ACCAATACAGGAAGATAAGATC-TGCTATCTTCGATCTACTTCGAC
* *
34164119 GCCAATACATGAAGACAAGATCT
320 ACCAATACAGGAAGACAAGATCT
34164142 GCTTTCAACG
Statistics
Matches: 300, Mismatches: 37, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
351 15 0.05
352 217 0.72
353 68 0.23
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (351 bp):
ATCCACTTCCTACAAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAT
GAAGACAAGACCTGCTTTCAACGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTT
GGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
ATGAAGACAAGATCTGCTTTCAACGATCTACTTCCCACCAATATAGGAAGACAGAATCTGCATCT
TCGATCCACTTCACACCAATACAGGAAGATAAGATCTGCTATCTTCGATCTACTTCGACACCAAT
ACAGGAAGACAAGATCTATATCTTGG
Found at i:34164689 original size:45 final size:45
Alignment explanation
Indices: 34164627--34164876 Score: 152
Period size: 45 Copynumber: 5.3 Consensus size: 45
34164617 GATCTGCAAT
*
34164627 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* * * * * * *
34164672 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-T---ATC---G-G
*
34164722 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* * * * * * *
34164767 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-T---ATC---G-G
*
34164817 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
*
34164862 CTTCAATGTACTCCA
1 CTTCAATCTACTCCA
34164877 TTGTGGTCAG
Statistics
Matches: 149, Mismatches: 34, Indels: 44
0.66 0.15 0.19
Matches are distributed among these distances:
42 22 0.15
43 6 0.04
45 45 0.30
46 8 0.05
49 8 0.05
50 32 0.21
52 6 0.04
53 22 0.15
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
Found at i:34164730 original size:95 final size:95
Alignment explanation
Indices: 34164625--34164913 Score: 560
Period size: 95 Copynumber: 3.0 Consensus size: 95
34164615 AAGATCTGCA
34164625 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
34164690 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
34164720 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
34164785 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
34164815 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCATTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
34164880 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
34164910 ATCT
1 ATCT
34164914 GCTTCGCTGC
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 192 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:34165055 original size:134 final size:134
Alignment explanation
Indices: 34164815--34165090 Score: 482
Period size: 134 Copynumber: 2.1 Consensus size: 134
34164805 GCCATCTTTG
* *
34164815 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCATTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* * *
34164880 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
34164945 TGCA-
131 TG-AT
34164949 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
34165014 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
34165079 TGAT
131 TGAT
34165083 ATCTTCAA
1 ATCTTCAA
34165091 CCAGCTCTGC
Statistics
Matches: 135, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
133 1 0.01
134 134 0.99
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
TGAT
Found at i:34165176 original size:86 final size:87
Alignment explanation
Indices: 34165037--34165215 Score: 270
Period size: 86 Copynumber: 2.1 Consensus size: 87
34165027 AAAATCTGCC
*
34165037 ATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATCTGATATCTTCAACCAGCTCTGCT
1 ATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATCTGATAACTTCAACCAGCTCTGCT
*
34165102 ACAAACGAGAGTGGCAAGGTTT
66 ACAAACGAGAGAGGCAAGGTTT
* * * * *
34165124 GTCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCT
1 ATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATCTGATAACTTCAACCAGCTCTGCT
* *
34165188 ACGACCGAGAGAGGCAAGGTTT
66 ACAAACGAGAGAGGCAAGGTTT
34165210 ATCTTC
1 ATCTTC
34165216 AATTTTTACT
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
86 62 0.76
87 20 0.24
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (87 bp):
ATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATCTGATAACTTCAACCAGCTCTGCT
ACAAACGAGAGAGGCAAGGTTT
Found at i:34169344 original size:19 final size:20
Alignment explanation
Indices: 34169320--34169363 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
34169310 CGTGAAAGTC
* *
34169320 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
34169339 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
34169359 -AATGC
1 TAATGC
34169364 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:34178830 original size:38 final size:38
Alignment explanation
Indices: 34178777--34178859 Score: 148
Period size: 38 Copynumber: 2.2 Consensus size: 38
34178767 CATATAAAGT
34178777 TTATAAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
1 TTAT-AAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
*
34178816 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
34178854 TTATAA
1 TTATAA
34178860 CTGACTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 39 0.91
39 4 0.09
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
Found at i:34180125 original size:22 final size:23
Alignment explanation
Indices: 34180100--34180159 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 23
34180090 AATACCTTAT
34180100 TTTTTCTTCT-TTTCCTTCCTTC
1 TTTTTCTTCTGTTTCCTTCCTTC
*
34180122 -TTTTCTTCTGCTTCCTTCCTTC
1 TTTTTCTTCTGTTTCCTTCCTTC
*
34180144 TTATTTCCTCTGTTTC
1 TT-TTTCTTCTGTTTC
34180160 TCTAGTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 9 0.28
22 11 0.34
23 1 0.03
24 11 0.34
ACGTcount: A:0.02, C:0.32, G:0.03, T:0.63
Consensus pattern (23 bp):
TTTTTCTTCTGTTTCCTTCCTTC
Found at i:34182220 original size:93 final size:97
Alignment explanation
Indices: 34182106--34182341 Score: 275
Period size: 101 Copynumber: 2.4 Consensus size: 97
34182096 AAATAATATT
*
34182106 TTTTGGGTGCTGGCCTGTCAATGGTCGGCACCCA-ACAA-TAAA-AAAAAAATT-TGTCAGAATA
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGACAATTAAATAAAAAAATTCTGTCAGAATA
34182167 AGATATAAATATACGAAAAAAATAAAAAAAAA-
66 AGATATAAATATAC-AAAAAAATAAAAAAAAAC
******* *
34182199 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTAAATTTTTTTTTTCGTGTCAGAG
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAG-ACAATTAAATAAAAAAATTC-TGTCAGAA
* * *
34182264 TCAGATATAATTATACTAAAAAATAAAAAAAAATCC
64 TAAGATATAAATATACAAAAAAATAAAAAAAAA--C
34182300 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATT
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAG-ACAATT
34182342 TAAAATTTTC
Statistics
Matches: 122, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
93 33 0.27
95 4 0.03
96 4 0.03
97 2 0.02
98 16 0.13
99 21 0.17
101 42 0.34
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (97 bp):
TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGACAATTAAATAAAAAAATTCTGTCAGAATA
AGATATAAATATACAAAAAAATAAAAAAAAAC
Found at i:34182364 original size:111 final size:112
Alignment explanation
Indices: 34182246--34182810 Score: 685
Period size: 111 Copynumber: 4.9 Consensus size: 112
34182236 CAATTAAATT
* * * *
34182246 TTTTTTTTCGTGTCAGAGTCAGATATAATTATAC-TAAAAAATAAAAAAAAATCCTTTTGGGTGC
1 TTTTTTTTCGTGTCAGAGTCAGATATAAATATACGAAAAAAATTAAAAAAAAT-TTTTTGGGTGC
*
34182310 TGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAATTTTCTTTTCT-T
65 TGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAATTTT-TTTT-TAC
* **
34182359 TTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAA-TAAAAAAAA-AATTTGGGTGCT
1 TTTTTTTTCGTGTCAGAGTCAGATATAAATATACGAAAAAAATTAAAAAAAATTTTTTGGGTGCT
34182422 GGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAATTTTTTTTTAC
66 GGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAATTTTTTTTTAC
*
34182469 TTTTTTTTCGTGTCAGAGTCAGATATAAATATACG-AAAAAATTAAAAAAAATGTTTTGGGTGCT
1 TTTTTTTTCGTGTCAGAGTCAGATATAAATATACGAAAAAAATTAAAAAAAATTTTTTGGGTGCT
* * * *
34182533 GGCCTATCAATGGCCGGCA-CCTGATAGGCCGGCACCCA-GTACAATTTAATTTTTTTTAC
66 GGCCTGTCAATGGCCGGCACCCAG-TA------CA---ATTTA-AA---ATTTTTTTTTAC
*
34182592 TTTTTTTTCCGTGTCAGAGTTAGATATAAATATACGAAAAAAATTAAAAAAAATTTTTTGGGTGC
1 TTTTTTTT-CGTGTCAGAGTCAGATATAAATATACGAAAAAAATTAAAAAAAATTTTTTGGGTGC
* *
34182657 TGGCCTATCAATGGCCGGCACCCAGTACAATTAAAAAATTTTTTTTTTTTAC
65 TGGCCTGTCAATGGCCGGCACCCAGTACAATT-TAAAA---TTTTTTTTTAC
* ***
34182709 TTTTTTTTCGTGTCAGAGTCAGATATAAATATACGAAAAAAATTTTAAAATTTTTTTTTGGGTGC
1 TTTTTTTTCGTGTCAGAGTCAGATATAAATATACGAAAAAAA-TTAAAAAAAATTTTTTGGGTGC
*
34182774 TGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAA
65 TGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAA
34182811 AAAAAAATTT
Statistics
Matches: 397, Mismatches: 28, Indels: 51
0.83 0.06 0.11
Matches are distributed among these distances:
109 7 0.02
110 50 0.13
111 80 0.20
113 40 0.10
114 7 0.02
116 38 0.10
117 70 0.18
118 1 0.00
119 4 0.01
120 3 0.01
123 19 0.05
124 26 0.07
125 49 0.12
126 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (112 bp):
TTTTTTTTCGTGTCAGAGTCAGATATAAATATACGAAAAAAATTAAAAAAAATTTTTTGGGTGCT
GGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAATTTTTTTTTAC
Found at i:34182672 original size:125 final size:124
Alignment explanation
Indices: 34182433--34182800 Score: 486
Period size: 117 Copynumber: 3.0 Consensus size: 124
34182423 GCCTGTCAAT
34182433 GGCCGGCACCCAGTACAATTTAAAATTTTTTTTTACTTTTTTTTCGTGTCAGAGTCAGATATAAA
1 GGCCGGCACCCAGTACAATTT--AA-TTTTTTTTACTTTTTTTTCGTGTCAGAGTCAGATATAAA
* *
34182498 TATACG-AAAAAATTAAAAAAAATGTTTTGGGTGCTGGCCTATCAATGGCCGGCA-CCTGATA
63 TATACGAAAAAAATTAAAAAAAATTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAG-TA
*
34182559 GGCCGGCACCCAGTACAATTTAATTTTTTTTACTTTTTTTTCCGTGTCAGAGTTAGATATAAATA
1 GGCCGGCACCCAGTACAATTTAATTTTTTTTACTTTTTTTT-CGTGTCAGAGTCAGATATAAATA
34182624 TACGAAAAAAATTAAAAAAAATTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTA
65 TACGAAAAAAATTAAAAAAAATTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTA
*** * * *
34182684 ------CAATTA-AAAAATTT-TTTTTTTTTACTTTTTTTTCGTGTCAGAGTCAGATATAAATAT
1 GGCCGGCACCCAGTACAATTTAATTTTTTTTACTTTTTTTTCGTGTCAGAGTCAGATATAAATAT
* *** *
34182741 ACGAAAAAAATTTTAAAATTTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTA
66 ACGAAAAAAA-TTAAAAAAAATTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTA
34182801 CAAATTAAAA
Statistics
Matches: 223, Mismatches: 15, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
116 33 0.15
117 62 0.28
118 6 0.03
119 3 0.01
123 18 0.08
124 28 0.13
125 49 0.22
126 24 0.11
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (124 bp):
GGCCGGCACCCAGTACAATTTAATTTTTTTTACTTTTTTTTCGTGTCAGAGTCAGATATAAATAT
ACGAAAAAAATTAAAAAAAATTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTA
Found at i:34185271 original size:11 final size:11
Alignment explanation
Indices: 34185258--34185296 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
34185248 TTTTAATATG
*
34185258 TAAAAAATAAG
1 TAAAAAATAAA
*
34185269 TAATAAATAAA
1 TAAAAAATAAA
34185280 TAAACAAATAAA
1 TAAA-AAATAAA
34185292 TAAAA
1 TAAAA
34185297 TAAAAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:34185313 original size:17 final size:17
Alignment explanation
Indices: 34185270--34185305 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
34185260 AAAAATAAGT
*
34185270 AATAAAT-AAATAAACA
1 AATAAATAAAATAAAAA
34185286 AATAAATAAAATAAAAA
1 AATAAATAAAATAAAAA
34185303 AAT
1 AAT
34185306 TTATAAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (17 bp):
AATAAATAAAATAAAAA
Found at i:34186854 original size:89 final size:88
Alignment explanation
Indices: 34186756--34187230 Score: 320
Period size: 89 Copynumber: 5.3 Consensus size: 88
34186746 AGTTTGCTTC
* *
34186756 ACTGCAACTTCAGGGAGATAAGATTCACTATATTCAATCTGATCCACTCAAACTTCAGGGAAATA
1 ACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGATCCACTC-AACTTCAGGGAGATA
*
34186821 AGATTTGTAGCTTCAATCTACTCT
65 AGATTTGTAGCTTCAATCTGCTCT
* * * * * * * * *
34186845 ACTGCAACTTCAGAGAGATAATATTCGCTATCTTCAATCTGCTACATTGCAACTTTAGGGCGATG
1 ACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGATCCACT-CAACTTCAGGGAGATA
*
34186910 AGGTTTGTAGCTTCAATCTGCT-T
65 AGATTTGTAGCTTCAATCTGCTCT
* * * * * * ** * *
34186933 CATTGTAACTTTAGGGAG-TAAGATTTGTAACT-TGATTTAATCCAACCCACTGTAACTTCAGAG
1 -ACTGCAACTTCAGAGAGATAAGA--T-TCACTAT-ATTCAATCTGATCCACT-CAACTTCAG-G
* * * * * * *
34186996 G-TATAGGA-TT-TAGTTTTAGTCTACTCC
59 GAGATAAGATTTGTAGCTTCAATCTGCTCT
* * * * *
34187023 ACTGCAACTTCAGGGAGATAAAACTT--GTA-ACTTCAATCTGTTCCACTACAATTTCAGGGAGA
1 ACTGCAACTTCAGAGAGATAAGA-TTCACTATA-TTCAATCTGATCCACT-CAACTTCAGGGAGA
*
34187085 TAAGATTTGTTATGTAGCTTTAATCTGCTCT
63 TAAGA----TT-TGTAGCTTCAATCTGCTCT
* * * * *
34187116 ACTGCAACTTCAGAGAGATAAGATTCGCTATCTTCAATCCGCTCTACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGATCCACT-CAACTTCAGGGAGATA
* *
34187181 AGATTTGTTATCTTCAATCTGCTCC
65 AGATTTG-TAGCTTCAATCTGCTCT
*
34187206 ACTGCAACTTCAGAAAGATAAGATT
1 ACTGCAACTTCAGAGAGATAAGATT
34187231 TGTGGTTTCA
Statistics
Matches: 291, Mismatches: 72, Indels: 45
0.71 0.18 0.11
Matches are distributed among these distances:
85 3 0.01
86 24 0.08
88 6 0.02
89 113 0.39
90 49 0.17
91 24 0.08
92 5 0.02
93 34 0.12
94 33 0.11
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (88 bp):
ACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGATCCACTCAACTTCAGGGAGATAA
GATTTGTAGCTTCAATCTGCTCT
Found at i:34187231 original size:45 final size:44
Alignment explanation
Indices: 34186750--34187233 Score: 352
Period size: 45 Copynumber: 10.8 Consensus size: 44
34186740 CGCTTCAGTT
* ** *
34186750 TGCTTCACTGCAACTTCAGGGAGATAAGATTCACTATATTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTATCTTCAATC
* * *
34186795 TGATCCACT-CAAACTTCAGGGAAATAAGATTTGTAGCTTCAATC
1 TGCTCCACTGC-AACTTCAGGGAGATAAGATTTGTATCTTCAATC
* * * * *
34186839 TACTCTACTGCAACTTCAGAGAGATAATATTCGCTATCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTCAATC
* * * * * * *
34186884 TGCTACATTGCAACTTTAGGGCGATGAGGTTTGTAGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATC
* * * * * *
34186928 TGCTTCATTGTAACTTTAGGGAG-TAAGATTTGTAACTTGATTTAATCC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A--T-CTTCAAT-C
** * * * *
34186976 AAC-CCACTGTAACTTCAGAGG-TATAGGATTTAGT-T-TT-AGTC
1 TGCTCCACTGCAACTTCAG-GGAGATAAGATTT-GTATCTTCAATC
* * * *
34187017 TACTCCACTGCAACTTCAGGGAGATAAAACTTGTAACTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATC
* * * *
34187061 TGTTCCACTACAATTTCAGGGAGATAAGATTTGTTATGTAGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA--T--CTTCAATC
* * *
34187110 TGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTCAATC
* *
34187155 CGCTCTACTGCAACTTCAGGGAGATAAGATTTGTTATCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTCAATC
**
34187200 TGCTCCACTGCAACTTCAGAAAGATAAGATTTGT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
34187234 GGTTTCACTA
Statistics
Matches: 343, Mismatches: 75, Indels: 43
0.74 0.16 0.09
Matches are distributed among these distances:
41 7 0.02
42 22 0.06
43 12 0.03
44 96 0.28
45 139 0.41
47 18 0.05
48 11 0.03
49 38 0.11
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATC
Found at i:34197142 original size:21 final size:20
Alignment explanation
Indices: 34197103--34197142 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
34197093 AATTAGAAAG
*
34197103 ATGAAAAATAAAGATGATAA
1 ATGAAAAATAAAGAAGATAA
*
34197123 ATGATAAAATAATGAAGATA
1 ATGA-AAAATAAAGAAGATA
34197143 TCATCATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (20 bp):
ATGAAAAATAAAGAAGATAA
Found at i:34203624 original size:60 final size:60
Alignment explanation
Indices: 34203511--34203626 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
34203501 CAGCCAGTCA
* *
34203511 CGATACCGGAATGGAAATGGGAAAGAGTTACCATGGAATTTGTATCGGGATTACCCTTGT
1 CGATACCGGAATGGAAATGGAAAAGAGTTACCATGGAATTTGTATCAGGATTACCCTTGT
* * *
34203571 CGATACCGGAATGGAAATGGAAAAGAGTTACCATGGATTTTGTGTCAGTATTACCC
1 CGATACCGGAATGGAAATGGAAAAGAGTTACCATGGAATTTGTATCAGGATTACCC
34203627 CTATCTCCGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (60 bp):
CGATACCGGAATGGAAATGGAAAAGAGTTACCATGGAATTTGTATCAGGATTACCCTTGT
Found at i:34206114 original size:26 final size:26
Alignment explanation
Indices: 34206085--34206168 Score: 114
Period size: 26 Copynumber: 3.2 Consensus size: 26
34206075 CTTGATATAT
34206085 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * *
34206111 GGCTCTTCATAAGCTTCCCGGTTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * *
34206137 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCGATTAAA
34206163 GGCTCT
1 GGCTCT
34206169 CCAGAGCTTC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:34206245 original size:24 final size:24
Alignment explanation
Indices: 34206209--34206263 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
34206199 TTTTCGATAT
* * *
34206209 ATGGCTATCCGGAGTTTCCCGTTA
1 ATGGCTCTCCGGAGCTACCCGTTA
*
34206233 ATGGCTCTTCGGAGCTACCCGTTA
1 ATGGCTCTCCGGAGCTACCCGTTA
*
34206257 TTGGCTC
1 ATGGCTC
34206264 GCATAAGCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.27, G:0.25, T:0.33
Consensus pattern (24 bp):
ATGGCTCTCCGGAGCTACCCGTTA
Found at i:34209403 original size:13 final size:13
Alignment explanation
Indices: 34209385--34209481 Score: 54
Period size: 13 Copynumber: 6.8 Consensus size: 13
34209375 ATTTAGTCTC
*
34209385 ATTATTGTTATTT
1 ATTATTATTATTT
34209398 ATTATTATTATTAGACT
1 ATTATTATTATT----T
34209415 AATTAGTTATTA-TT
1 -ATTA-TTATTATTT
*
34209429 ATTATTACTATTACT
1 ATTATTATTATT--T
*
34209444 AGTATTA-TATTT
1 ATTATTATTATTT
*
34209456 ATTATTATTACTT
1 ATTATTATTATTT
34209469 ACCTTATTATTAT
1 A--TTATTATTAT
34209482 AATAATTATT
Statistics
Matches: 66, Mismatches: 6, Indels: 22
0.70 0.06 0.23
Matches are distributed among these distances:
12 12 0.18
13 21 0.32
14 5 0.08
15 16 0.24
17 1 0.02
18 5 0.08
19 6 0.09
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (13 bp):
ATTATTATTATTT
Found at i:34209404 original size:3 final size:3
Alignment explanation
Indices: 34209385--34209491 Score: 65
Period size: 3 Copynumber: 34.0 Consensus size: 3
34209375 ATTTAGTCTC
* * *
34209385 ATT ATT GTT ATTT ATT ATT ATT ATT A-G ACTA ATT AGTT ATT ATT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT A-TT ATT A-TT ATT ATT ATT
* * *
34209432 ATT ACT ATT ACT AGT ATT A-T ATTT ATT ATT ATT ACTT ACCTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT A-TT A--TT ATT ATT
* *
34209480 ATA ATA ATT ATT
1 ATT ATT ATT ATT
34209492 TACGGCCAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
2 3 0.04
3 65 0.77
4 12 0.14
5 4 0.05
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:34210236 original size:125 final size:125
Alignment explanation
Indices: 34209852--34210494 Score: 941
Period size: 124 Copynumber: 5.2 Consensus size: 125
34209842 TAAGTCGCAA
* * * * *
34209852 CGTGTACGCACTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTTGAGTTGACGTTTCTGAGAAA
1 CGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAA
* * * *
34209916 ATAGTATAAAATCGCTTCTAGCAGGATGCTGTTTCATAAGAATTTGTGAAATCGCACCCT
66 ATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCT
* * *
34209976 CGTGGACGCGCTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTTGAGTTGACGTTTCTGAGAAA
1 CGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAA
* * * *
34210040 ATAGTATAAAATCGCTTCTAGCAGGATGCTGTTTCATAAGAATTTGTGAAATCGCACCCT
66 ATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCT
* *
34210100 CGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTCCGACTTGACGTTTCTGAGCAA
1 CGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAA
* * * *
34210165 ATAGTATAAAATTGTTTCAAGCAGGATGTTATTTGAGAAGAATTTGTGAAATCGCGCCCT
66 ATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCT
* * * * * *
34210225 TGTGAATGCGCTTTTGCTACAGTAGTTCCTGGAAGAAATAATTTCGACTTGAAGTTTCTGAGCAA
1 CGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAA
* *
34210290 ATAGTATAAAATCGCTTCTAGCAGGATGTTATTTGAGAAGAATTTATGAAATCGCGCCCT
66 ATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCT
*
34210350 CGTGGACGCGCTTTTGCTACAGTAGGTCCTGG-AAAAATAATTTCAACTTGACGTTTCTGAGCAA
1 CGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAA
* *
34210414 ATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCACGCCTT
66 ATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCT
* * *
34210474 CGTGGACACACTTTTGTTACA
1 CGTGGACGCGCTTTTGCTACA
34210495 TTAGCATGTT
Statistics
Matches: 479, Mismatches: 39, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
124 255 0.53
125 224 0.47
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (125 bp):
CGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAA
ATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCT
Found at i:34211057 original size:16 final size:16
Alignment explanation
Indices: 34211036--34211067 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
34211026 AGCGGTGTTG
34211036 AATGCACATCCCCCAC
1 AATGCACATCCCCCAC
34211052 AATGCACATCCCCCAC
1 AATGCACATCCCCCAC
34211068 GATACCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.50, G:0.06, T:0.12
Consensus pattern (16 bp):
AATGCACATCCCCCAC
Found at i:34212549 original size:21 final size:21
Alignment explanation
Indices: 34212510--34215319 Score: 2804
Period size: 21 Copynumber: 131.2 Consensus size: 21
34212500 AAAACCTTAA
34212510 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
34212532 GGTTTTTAAGTTAAGGTTTTAG
1 GGTTTTTAAGTTAAGG-TTTAG
*
34212554 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34212575 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34212596 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34212617 GGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
34212638 GGTTTTTAATTTAATGG-TTAG
1 GGTTTTTAAGTTAA-GGTTTAG
34212659 GGTTTTTAAGTTAAGAG-TTAG
1 GGTTTTTAAGTTAAG-GTTTAG
* *
34212680 AGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34212701 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34212722 GGTTTTTAATTTAATGGTTAGGATTAG
1 GGTTTTTAAGTTAA-GG-T----TTAG
34212749 GGTTTTTAAGTTAAAGGTTTAG
1 GGTTTTTAAGTT-AAGGTTTAG
* *
34212771 GGTATAATTGT-AGTAAAGGTTTGG
1 GGT-T--TT-TAAGTTAAGGTTTAG
* *
34212795 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34212816 GGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
34212837 GGTTTTTAATTTAATGG-TTAG
1 GGTTTTTAAGTTAA-GGTTTAG
34212858 GGTTTTTAAGTTAAGAG-TTAG
1 GGTTTTTAAGTTAAG-GTTTAG
* *
34212879 AGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34212900 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34212921 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34212942 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
34212963 GGTTTTTAAGTTAAGGGTTT-G
1 GGTTTTTAAGTTAA-GGTTTAG
*
34212984 GGTTTTTAAGTGAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
*
34213006 GGTTTTTAAGTTAAGATTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213027 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213048 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34213069 AG-TTTTAA-TTAAGGGTTAA
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34213088 AGTTTTTTAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213109 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213130 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213151 GGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
34213172 GGTTTTTAATTTAATGG-TTAG
1 GGTTTTTAAGTTAA-GGTTTAG
34213193 GGTTTTTAAGTTAAGAG-TTAG
1 GGTTTTTAAGTTAAG-GTTTAG
* *
34213214 AGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213235 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213256 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213277 GGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
34213298 GGTTTTTAATTTAATGG-TTAG
1 GGTTTTTAAGTTAA-GGTTTAG
34213319 GGTTTTTAAGTTAAGAG-TTAG
1 GGTTTTTAAGTTAAG-GTTTAG
* *
34213340 AGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213361 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213382 GGTTTTTAATTTAATGGTTAGGATTAG
1 GGTTTTTAAGTTAA-GG-T----TTAG
34213409 GGTTTTTAAGTTAAAGGTTTAG
1 GGTTTTTAAGTT-AAGGTTTAG
* *
34213431 GG-----GA-TTAAGGTTTAA
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213446 GGTTTTTAATTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
34213468 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213489 GGTTATTAAGTTAAGTTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34213510 GGATTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213531 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213552 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213573 GGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213594 AGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213615 GGTTTTTAATTTAATGGTTAGGTTTAG
1 GGTTTTTAAGTT-A-----AGGTTTAG
*
34213642 GGTTTTTAAGTTAATGG-TTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
34213663 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213683 TGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213704 GGTTTTTAATTTAAGGTTTAT
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34213725 TGTTTTTAATTTAATAG-TTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* * *
34213746 GGTTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34213767 AGTTTTTAAGTTTAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34213788 TGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213809 GGTTTTTAATTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* *
34213831 GGTTTTTAAGTTAAGGATTAA
1 GGTTTTTAAGTTAAGGTTTAG
*
34213852 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34213873 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34213893 AGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
34213914 GGTTTTTAA-TATAAGGTTTAG
1 GGTTTTTAAGT-TAAGGTTTAG
*
34213935 GATTTTTAA-TATAATGGTGTTAG
1 GGTTTTTAAGT-TAA-GGT-TTAG
34213958 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* * * *
34213980 AGTTTTTAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
34214001 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214021 GGTTTTTAAGTTAAGAGTTTAT
1 GGTTTTTAAGTTAAG-GTTTAG
* * *
34214043 GGTTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214064 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214085 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214106 GGTTTTTAATTTAATGGTTAGGTTTAG
1 GGTTTTTAAGTT-A-----AGGTTTAG
*
34214133 GGTTTTTAAGTTAATGG-TTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
34214154 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34214174 TGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34214195 GGTTTTTAATTTAAGGTTTAT
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34214216 TGTTTTTAATTTAATAG-TTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* * *
34214237 GGTTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34214258 AGTTTTTAAGTTTAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34214279 TGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214300 GGTTTTTAATTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* *
34214322 GGTTTTTAAGTTAAGGATTAA
1 GGTTTTTAAGTTAAGGTTTAG
*
34214343 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214364 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34214384 AGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
34214405 GGTTTTTAA-TATAAGGTTTAG
1 GGTTTTTAAGT-TAAGGTTTAG
*
34214426 GATTTTTAA-TATAATGGTGTTAG
1 GGTTTTTAAGT-TAA-GGT-TTAG
34214449 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* * * *
34214471 AGTTTTTAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
34214492 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214512 GGTTTTTAAGTTAAGAGTTTAT
1 GGTTTTTAAGTTAAG-GTTTAG
* * *
34214534 GGTTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34214555 GGTTTTTGAGTTCAGAG-TTAG
1 GGTTTTTAAGTTAAG-GTTTAG
*
34214576 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34214597 GATTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214618 GGTTTTTAA-TTAAGGATTAG
1 GGTTTTTAAGTTAAGGTTTAG
34214638 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
*
34214660 GGTTTTTAAATTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214681 GGTTTTTAATTTAATGGTTAGAGTTAG
1 GGTTTTTAAGTTAA-GG-T----TTAG
*
34214708 GGTTTTTAAGTTAAAGGTTTAT
1 GGTTTTTAAGTT-AAGGTTTAG
34214730 GGTTTTTAAGTTAATGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* * *
34214752 AGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214773 GGTTTTTAA-TTAAGGATTAG
1 GGTTTTTAAGTTAAGGTTTAG
34214793 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
*
34214815 GGTTTTTAAATTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34214836 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214857 GGTTTTTAA-TTAAGGATTAG
1 GGTTTTTAAGTTAAGGTTTAG
34214877 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
*
34214899 GGTTTTTAAATTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34214920 GGTTTTTAATTTAATGGTTAGAGTTAG
1 GGTTTTTAAGTTAA-GG-T----TTAG
*
34214947 GGTTTTTAAGTTAAAGGTTTAT
1 GGTTTTTAAGTT-AAGGTTTAG
34214969 GGTTTTTAAGTTAATGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* * *
34214991 AGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34215012 GGTTTTTATA-TTAAGGGTTAG
1 GGTTTTTA-AGTTAAGGTTTAG
34215033 GGTTTTTAAGTTAAGAG-TTAG
1 GGTTTTTAAGTTAAG-GTTTAG
*
34215054 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
34215075 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34215096 GGTTTTTAA-TTAAGGATTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
34215116 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
34215138 GGTTTTTAATTTAATGG-TTAG
1 GGTTTTTAAGTTAA-GGTTTAG
*
34215159 GGTTTTTAATTTAATGGTTAGGGTTAG
1 GGTTTTTAAGTTAA-GG-T----TTAG
*
34215186 GGTTTTTAAGTTGAAGGTTTAT
1 GGTTTTTAAGTT-AAGGTTTAG
*
34215208 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
* * *
34215230 GGTTATTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
34215251 GGTTATTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
34215272 GGTTTTTAAGTTAAGAGTTTAG
1 GGTTTTTAAGTTAAG-GTTTAG
* *
34215294 GATTTTTAATTTAAGGGTTT-G
1 GGTTTTTAAGTTAA-GGTTTAG
34215315 GGTTT
1 GGTTT
34215320 GGGTTTTTTT
Statistics
Matches: 2414, Mismatches: 253, Indels: 243
0.83 0.09 0.08
Matches are distributed among these distances:
15 10 0.00
16 2 0.00
17 1 0.00
19 16 0.01
20 210 0.09
21 1553 0.64
22 420 0.17
23 43 0.02
24 13 0.01
25 5 0.00
26 8 0.00
27 123 0.05
28 10 0.00
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.47
Consensus pattern (21 bp):
GGTTTTTAAGTTAAGGTTTAG
Found at i:34212610 original size:42 final size:42
Alignment explanation
Indices: 34212510--34215319 Score: 3112
Period size: 42 Copynumber: 65.6 Consensus size: 42
34212500 AAAACCTTAA
*
34212510 GGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGTTTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGG-GTTAG
* *
34212554 GGTTTTTAAGTTAAGGGTTAGGGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34212596 GGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34212638 GGTTTTTAATTTAATGGTTAGGGTTTTTAAGTTAAGAGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34212680 AGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34212722 GGTTTTTAATTTAATGGTTAGGATTAGGGTTTTTAAGTTAAAGGTTTAG
1 GGTTTTTAAGTTAA--G---GG-TTAGGGTTTTTAAGTT-AAGGGTTAG
* * * *
34212771 GGTATAATTGT-AGTAAAGGTTTGGGGTTTTTAATTTAAGGGTTAG
1 GGT-T--TT-TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34212816 GGTTTTTAAGTTAAGGGTTATGGTTTTTAATTTAATGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34212858 GGTTTTTAAGTTAAGAGTTAGAGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34212900 GGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
*
34212942 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* **
34212984 GGTTTTTAAGTGAAGGGTTTAGGGTTTTTAAGTTAAGATTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213027 GGTTATTAAGTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* ** *
34213069 AG-TTTTAA-TTAAGGGTTAAAGTTTTTTAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213109 GGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213151 GGTTTTTAAGTTAAGGGTTATGGTTTTTAATTTAATGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34213193 GGTTTTTAAGTTAAGAGTTAGAGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213235 GGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213277 GGTTTTTAAGTTAAGGGTTATGGTTTTTAATTTAATGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34213319 GGTTTTTAAGTTAAGAGTTAGAGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213361 GGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAATGGTTAGGATTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAA--G---GG-TTAG
* * * *
34213409 GGTTTTTAAGTTAAAGGTTTAGGG-----GA-TTAAGGTTTAA
1 GGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34213446 GGTTTTTAATTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* ** * *
34213489 GGTTATTAAGTTAAGTTTTAGGGATTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
*
34213531 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
** * *
34213573 GGTTTTTAAGTTAAGGGTTATAGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213615 GGTTTTTAATTTAATGGTTAGGTTTAGGGTTTTTAAGTTAATGGTTAT
1 GGTTTTTAAGTTAA--G---GG-TTAGGGTTTTTAAGTTAAGGGTTAG
*
34213663 GGTTTTTAA-TTAAGGGTTAGTGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * ** * **
34213704 GGTTTTTAATTTAAGGTTTATTGTTTTTAATTTAATAGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34213746 GGTTTTAAATTTAAGGGTTAGAGTTTTTAAGTTTAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213788 TGTTTTTAATTTAAGGGTTAGGGTTTTTAATTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAG
* *
34213831 GGTTTTTAAGTTAAGGATTAAGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
*
34213873 GGTTTTTAA-TTAAGGGTTAGAGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34213914 GGTTTTTAA-TATAAGGTTTAGGATTTTTAA-TATAATGGTGTTAG
1 GGTTTTTAAGT-TAAGGGTTAGGGTTTTTAAGT-TAA-GG-GTTAG
* * *
34213958 GGTTTTTAAGTTAAGGGTTTAGAGTTTTTAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* *
34214001 GGTTTTTAA-TTAAGGGTTAGGGTTTTTAAGTTAAGAGTTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAG-GGTTAG
* *
34214043 GGTTTTAAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34214085 GGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAATGGTTAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAA--G---GG-TTAG
* *
34214133 GGTTTTTAAGTTAATGGTTATGGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34214174 TGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * ** * *
34214216 TGTTTTTAATTTAATAGTTAGGGTTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34214258 AGTTTTTAAGTTTAGGGTTAGTGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34214300 GGTTTTTAATTTAAGGGTTTAGGGTTTTTAAGTTAAGGATTAA
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
34214343 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34214384 AGTTTTTAAGTTAAGGGTTAGGGTTTTTAA-TATAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGT-TAAGGGTTAG
*
34214426 GATTTTTAA-TATAATGGTGTTAGGGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGT-TAA-GG-GTTAGGGTTTTTAAGTTAAGGG-TTAG
* * *
34214471 AGTTTTTAATTTAAGGGTTATGGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34214512 GGTTTTTAAGTTAAGAGTTTATGGTTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAG-GGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * * *
34214555 GGTTTTTGAGTTCAGAGTTAGGGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34214597 GATTTTTAATTTAAGGGTTAGGGTTTTTAA-TTAAGGATTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34214638 GGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAATTAAGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34214681 GGTTTTTAATTTAATGGTTAGAGTTAGGGTTTTTAAGTTAAAGGTTTAT
1 GGTTTTTAAGTTAA--G---G-GTTAGGGTTTTTAAGTT-AAGGGTTAG
* * *
34214730 GGTTTTTAAGTTAATGGTTTAGAGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTAG
*
34214773 GGTTTTTAA-TTAAGGATTAGGGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAG
* * *
34214815 GGTTTTTAAATTAAGGTTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
*
34214857 GGTTTTTAA-TTAAGGATTAGGGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAG
* * *
34214899 GGTTTTTAAATTAAGGTTTAGGGTTTTTAATTTAATGGTTAGAGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAA--G---G-GTTAG
* * *
34214947 GGTTTTTAAGTTAAAGGTTTATGGTTTTTAAGTTAATGGTTTAG
1 GGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAA-GGGTTAG
* *
34214991 AGTTTTTAATTTAAGGGTTAGGGTTTTTATA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTA-AGTTAAGGGTTAG
* * *
34215033 GGTTTTTAAGTTAAGAGTTAGGGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34215075 GGTTTTTAATTTAAGGGTTAGGGTTTTTAA-TTAAGGATTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34215116 GGTTTTTAAGTTAAGGGTTTATGGTTTTTAATTTAATGGTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34215159 GGTTTTTAATTTAATGGTTAGGGTTAGGGTTTTTAAGTTGAAGGTTTAT
1 GGTTTTTAAGTT-A-----AGGGTTAGGGTTTTTAAGTT-AAGGGTTAG
* * *
34215208 GGTTTTTAAGTTAAGGGTTTATGGTTATTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34215251 GGTTATTAATTTAAGGGTTAGGGTTTTTAAGTTAAGAGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAG-GGTTAG
* * *
34215294 GATTTTTAATTTAAGGGTTTGGGTTT
1 GGTTTTTAAGTTAAGGGTTAGGGTTT
34215320 GGGTTTTTTT
Statistics
Matches: 2375, Mismatches: 295, Indels: 193
0.83 0.10 0.07
Matches are distributed among these distances:
36 4 0.00
37 19 0.01
38 1 0.00
40 28 0.01
41 288 0.12
42 1197 0.50
43 416 0.18
44 108 0.05
45 47 0.02
46 16 0.01
47 17 0.01
48 137 0.06
49 88 0.04
50 2 0.00
52 6 0.00
53 1 0.00
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.47
Consensus pattern (42 bp):
GGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
Found at i:34212634 original size:63 final size:63
Alignment explanation
Indices: 34212510--34215319 Score: 3130
Period size: 63 Copynumber: 43.7 Consensus size: 63
34212500 AAAACCTTAA
* *
34212510 GGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGTTTTAGGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAAGG-GTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34212575 GGTTATTAAGTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * * *
34212638 GGTTTTTAATTTAATGGTTAGGGTTTTTAAGTTAAGAGTTAGAGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34212701 GGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAATGGTTAGGATTAGGGTTTTTAAGTTAAAGG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAA--G---GG-TTAGGGTTTTTAAGTT-AAGG
*
34212766 TTTAG
59 GTTAG
* * *
34212771 GGTATAATTGT-AGTAAAGGTTTGGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT
1 GGT-T--TT-TAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT
*
34212835 AT
62 AG
* * * * *
34212837 GGTTTTTAATTTAATGGTTAGGGTTTTTAAGTTAAGAGTTAGAGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* *
34212900 GGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * **
34212963 GGTTTTTAAGTTAAGGGTTTGGGTTTTTAAGTGAAGGGTTTAGGGTTTTTAAGTTAAGATTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34213027 GGTTATTAAGTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGAG-TTTTAA-TTAAGGGTTAA
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34213088 AGTTTTTTAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213151 GGTTTTTAAGTTAAGGGTTATGGTTTTTAATTTAATGGTTAGGGTTTTTAAGTTAAGAGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213214 AGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213277 GGTTTTTAAGTTAAGGGTTATGGTTTTTAATTTAATGGTTAGGGTTTTTAAGTTAAGAGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213340 AGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAATGGTTAGGA
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAA--G---GG-
34213405 TTAG
60 TTAG
* * * * * *
34213409 GGTTTTTAAGTTAAAGGTTTAGGG-----GA-TTAAGGTTTAAGGTTTTTAATTTAAGGGTTTAT
1 GGTTTTTAAGTT-AAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAG
* * ** * *
34213468 GGTTTTTAAGTTAAGGGTTAGGGTTATTAAGTTAAGTTTTAGGGATTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
*
34213531 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34213594 AGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAATGGTTAGGTTTAGGGTTTTTAAGTTAATGG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAA--G---GG-TTAGGGTTTTTAAGTTAAGGG
*
34213659 TTAT
60 TTAG
* * * * *
34213663 GGTTTTTAA-TTAAGGGTTAGTGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * ** * * *
34213725 TGTTTTTAATTTAATAGTTAGGGTTTTAAATTTAAGGGTTAGAGTTTTTAAGTTTAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34213788 TGTTTTTAATTTAAGGGTTAGGGTTTTTAATTTAAGGGTTTAGGGTTTTTAAGTTAAGGATTAA
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
*
34213852 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAA-TTAAGGGTTAGAGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34213914 GGTTTTTAA-TATAAGGTTTAGGATTTTTAATATAATGGTGTTAGGGTTTTTAAGTTAAGGGTTT
1 GGTTTTTAAGT-TAAGGGTTAGGGTTTTTAATTTAA-GG-GTTAGGGTTTTTAAGTTAAGGG-TT
34213978 AG
62 AG
* * * * *
34213980 AGTTTTTAATTTAAGGGTTATGGTTTTTAA-TTAAGGGTTAGGGTTTTTAAGTTAAGAGTTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAG-GGTTAG
* * * * *
34214043 GGTTTTAAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34214106 GGTTTTTAATTTAATGGTTAGGTTTAGGGTTTTTAAGTTAATGGTTATGGTTTTTAA-TTAAGGG
1 GGTTTTTAAGTTAA--G---GG-TTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGG
34214170 TTAG
60 TTAG
* * ** * **
34214174 TGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTATTGTTTTTAATTTAATAGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * * *
34214237 GGTTTTAAATTTAAGGGTTAGAGTTTTTAAGTTT-AGGGTTAGTGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAA-TTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34214300 GGTTTTTAATTTAAGGGTTTAGGGTTTTTAAGTTAAGGATTAAGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34214364 GGTTTTTAA-TTAAGGGTTAGAGTTTTTAAGTTAAGGGTTAGGGTTTTTAA-TATAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGT-TAAGGGTTAG
* * * *
34214426 GATTTTTAA-TATAATGGTGTTAGGGTTTTTAAGTTAAGGGTTTAGAGTTTTTAATTTAAGGGTT
1 GGTTTTTAAGT-TAA-GG-GTTAGGGTTTTTAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTT
*
34214490 AT
62 AG
* * * * *
34214492 GGTTTTTAA-TTAAGGGTTAGGGTTTTTAAGTTAAGAGTTTATGGTTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAG-GGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * * * * * *
34214555 GGTTTTTGAGTTCAGAGTTAGGGTTATTAAGTTAAGGTTTAGGATTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34214618 GGTTTTTAA-TTAAGGATTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAATTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34214681 GGTTTTTAATTTAATGGTTAGAGTTAGGGTTTTTAAGTTAAAGGTTTATGGTTTTTAAGTTAATG
1 GGTTTTTAAGTTAA--G---G-GTTAGGGTTTTTAA-TTTAAGGGTTAGGGTTTTTAAGTTAA-G
*
34214746 GTTTAG
58 GGTTAG
* * *
34214752 AGTTTTTAATTTAAGGGTTAGGGTTTTTAA-TTAAGGATTAGGGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAG
* * *
34214815 GGTTTTTAAATTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAA-TTAAGGATTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34214877 GGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAATTAAGGTTTAGGGTTTTTAATTTAATGGTTAGA
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAA--G---G-
34214942 GTTAG
59 GTTAG
* * * * * *
34214947 GGTTTTTAAGTTAAAGGTTTATGGTTTTTAAGTTAATGGTTTAGAGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTT-AAGGGTTAGGGTTTTTAATTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * * *
34215012 GGTTTTTATA-TTAAGGGTTAGGGTTTTTAAGTTAAGAGTTAGGGTTATTAAGTTAAGGTTTAG
1 GGTTTTTA-AGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34215075 GGTTTTTAATTTAAGGGTTAGGGTTTTTAA-TTAAGGATTAGGGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAG
* *
34215138 GGTTTTTAATTTAATGGTTAGGGTTTTTAATTTAATGGTTAGGGTTAGGGTTTTTAAGTTGAAGG
1 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTT-A-----AGGGTTAGGGTTTTTAAGTT-AAGG
* *
34215203 TTTAT
59 GTTAG
* * * *
34215208 GGTTTTTAAGTTAAGGGTTTATGGTTATTAATTTAAGGGTTAGGGTTATTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
* * *
34215272 GGTTTTTAAGTTAAGAGTTTAGGATTTTTAATTTAAGGGTTTGGGTTT
1 GGTTTTTAAGTTAAG-GGTTAGGGTTTTTAATTTAAGGGTTAGGGTTT
34215320 GGGTTTTTTT
Statistics
Matches: 2380, Mismatches: 268, Indels: 195
0.84 0.09 0.07
Matches are distributed among these distances:
58 10 0.00
59 17 0.01
61 48 0.02
62 240 0.10
63 1111 0.47
64 377 0.16
65 118 0.05
66 74 0.03
67 18 0.01
68 52 0.02
69 98 0.04
70 121 0.05
71 69 0.03
73 26 0.01
74 1 0.00
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.47
Consensus pattern (63 bp):
GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAG
Found at i:34214128 original size:27 final size:27
Alignment explanation
Indices: 34214098--34214158 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 27
34214088 TTTTAATTTA
*
34214098 AGGTTTAGGGTTTTTAATTTAATGGTT
1 AGGTTTAGGGTTTTTAAGTTAATGGTT
34214125 AGGTTTAGGGTTTTTAAGTTAATGGTT
1 AGGTTTAGGGTTTTTAAGTTAATGGTT
34214152 ATGGTTT
1 A-GGTTT
34214159 TTAATTAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (27 bp):
AGGTTTAGGGTTTTTAAGTTAATGGTT
Found at i:34215204 original size:27 final size:27
Alignment explanation
Indices: 34215153--34215204 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
34215143 TTAATTTAAT
*
34215153 GGTTAGGGTTTTTAATTTAATGGTTAG
1 GGTTAGGGTTTTTAATTGAATGGTTAG
34215180 GGTTAGGGTTTTTAAGTTGAA-GGTT
1 GGTTAGGGTTTTTAA-TTGAATGGTT
34215205 TATGGTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (27 bp):
GGTTAGGGTTTTTAATTGAATGGTTAG
Found at i:34215354 original size:38 final size:38
Alignment explanation
Indices: 34215310--34215388 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
34215300 TAATTTAAGG
34215310 GTTTGGGTTTGGGTTTTTTTGTTAAGAGTTTAAGGTTT
1 GTTTGGGTTTGGGTTTTTTTGTTAAGAGTTTAAGGTTT
*
34215348 GTTTGGGTTTGGGTTTTTTTGTTAAGGGTTTAAGGTTT
1 GTTTGGGTTTGGGTTTTTTTGTTAAGAGTTTAAGGTTT
34215386 GTT
1 GTT
34215389 AATTAAATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56
Consensus pattern (38 bp):
GTTTGGGTTTGGGTTTTTTTGTTAAGAGTTTAAGGTTT
Found at i:34215409 original size:17 final size:19
Alignment explanation
Indices: 34215387--34215425 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
34215377 TTAAGGTTTG
*
34215387 TTAATTA-AA-TTATATAT
1 TTAATTATAATTTATAAAT
34215404 TTAATTATAATTTATAAAT
1 TTAATTATAATTTATAAAT
34215423 TTA
1 TTA
34215426 TAAATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 2 0.11
19 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAATTATAATTTATAAAT
Found at i:34215968 original size:40 final size:41
Alignment explanation
Indices: 34215924--34216023 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 41
34215914 ATCGCCCCCT
*
34215924 CGTGGACGCGATTTGTTGCCACGTCAAC-AAAGCGCGCTGA
1 CGTGGACGCGATTTGCTGCCACGTCAACGAAAGCGCGCTGA
* * * * ** * *
34215964 CGTGGTCACGATTTCCTGGCACGTCCCCTGACATCGCGCTGA
1 CGTGGACGCGATTTGCTGCCACGTCAAC-GAAAGCGCGCTGA
34216006 CGTGGACGCGATTTGCTG
1 CGTGGACGCGATTTGCTG
34216024 GAAAAGGCAC
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
40 21 0.46
42 25 0.54
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (41 bp):
CGTGGACGCGATTTGCTGCCACGTCAACGAAAGCGCGCTGA
Found at i:34216279 original size:34 final size:33
Alignment explanation
Indices: 34216225--34216289 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
34216215 TATTTATATA
*
34216225 TATATACATACATACTTATATATATATTTTAATT
1 TATATACATACATAC-TATATATACATTTTAATT
34216259 TATATACATATCTATA-TATATATACATTTTA
1 TATATACATA-C-ATACTATATATACATTTTA
34216290 TTTTCATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 24 0.86
35 1 0.04
36 3 0.11
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (33 bp):
TATATACATACATACTATATATACATTTTAATT
Found at i:34216280 original size:18 final size:18
Alignment explanation
Indices: 34216219--34216285 Score: 61
Period size: 18 Copynumber: 3.8 Consensus size: 18
34216209 ACAACTTATT
34216219 TATATATATATACATA-C
1 TATATATATATACATATC
*
34216236 -ATACT-TATATATATAT-
1 TATA-TATATATACATATC
* *
34216252 TTTAATTTATATACATATC
1 TAT-ATATATATACATATC
34216271 TATATATATATACAT
1 TATATATATATACAT
34216286 TTTATTTTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 12 0.31
17 3 0.08
18 22 0.56
19 2 0.05
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TATATATATATACATATC
Found at i:34216332 original size:53 final size:53
Alignment explanation
Indices: 34216274--34216409 Score: 134
Period size: 53 Copynumber: 2.6 Consensus size: 53
34216264 ACATATCTAT
* * *
34216274 ATATATATACATTTTAT-TTTCAT-TTTTTTATTTTCATGAATATATATACATAC
1 ATATATATACATTTTATATTTCATAATTTTTATATACAT--ATATATATACATAC
* ** *
34216327 GTATATATATTTTTTATATTTTATAATTTTTATATACATATATATATACATAC
1 ATATATATACATTTTATATTTCATAATTTTTATATACATATATATATACATAC
* * *
34216380 ATATATAT-CTTTTTACATTTTTATAATTTT
1 ATATATATACATTTTATA-TTTCATAATTTT
34216410 AGTCATTTTC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
52 7 0.10
53 47 0.67
54 5 0.07
55 11 0.16
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (53 bp):
ATATATATACATTTTATATTTCATAATTTTTATATACATATATATATACATAC
Found at i:34216374 original size:12 final size:12
Alignment explanation
Indices: 34216357--34216386 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
34216347 TTATAATTTT
*
34216357 TATATACATATA
1 TATATACATACA
34216369 TATATACATACA
1 TATATACATACA
34216381 TATATA
1 TATATA
34216387 TCTTTTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (12 bp):
TATATACATACA
Found at i:34217123 original size:189 final size:188
Alignment explanation
Indices: 34216782--34217148 Score: 538
Period size: 189 Copynumber: 1.9 Consensus size: 188
34216772 TTTTAAATGA
* * *
34216782 TCTCGGGAATTAACAAAAGATCGTGTTCTAACTTACTGGGCATGATCCCTTTTTTAATCCGAGAT
1 TCTCGGGAATTAACAAAAGATCGTGTTCTAACTTACGGGGCATGATCCCTTTTTAAACCCGAGAT
* ***
34216847 AGCTAAATATCTTTTAAATAAGTAAATTTTTGGCATCCATTTTGCGCATCAGGAATTCAAGACAT
66 AACTAAATATCTTTTAAATAAGTAAATTTTCACCATCCATTTTGCGCATCAGGAATTCAAGACAT
* * *
34216912 TGTGTCTTAACTTACTGGATATAATTCTCTTTCTCGATTAACGTGAAATATGCCCTTT
131 TGTGTCCTAACTTACGGGATATAATTCTCTTTCCCGATTAACGTGAAATATGCCCTTT
*
34216970 TCTCGGGAATTAACAAAAGATCGTGTTCTAACTTACGGGGCATGATCTCTTTTCTAAACCCGAGA
1 TCTCGGGAATTAACAAAAGATCGTGTTCTAACTTACGGGGCATGATCCCTTTT-TAAACCCGAGA
* * * ** * * *
34217035 TAATTAAATATCTTTTTAAATAAGTAAGTTTTCACCGTTTA-TTTGCGTATCGGGACTTCAAGAC
65 TAACTAAATATC-TTTTAAATAAGTAAATTTTCACCATCCATTTTGCGCATCAGGAATTCAAGAC
34217099 ATTGTGTCCTAACTTACGGGATATAATTCTCTTTCCCGATTAACGTGAAA
129 ATTGTGTCCTAACTTACGGGATATAATTCTCTTTCCCGATTAACGTGAAA
34217149 CATTCCCCTT
Statistics
Matches: 158, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
188 51 0.32
189 86 0.54
190 21 0.13
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (188 bp):
TCTCGGGAATTAACAAAAGATCGTGTTCTAACTTACGGGGCATGATCCCTTTTTAAACCCGAGAT
AACTAAATATCTTTTAAATAAGTAAATTTTCACCATCCATTTTGCGCATCAGGAATTCAAGACAT
TGTGTCCTAACTTACGGGATATAATTCTCTTTCCCGATTAACGTGAAATATGCCCTTT
Found at i:34219528 original size:17 final size:17
Alignment explanation
Indices: 34219486--34219528 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
34219476 TTTTAATATG
34219486 TAAAAAAATAAAATAAA
1 TAAAAAAATAAAATAAA
**
34219503 TAAGCAAAT-AAATAAAA
1 TAAAAAAATAAAAT-AAA
34219520 TAAAAAAAT
1 TAAAAAAAT
34219529 TATAAAAGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (17 bp):
TAAAAAAATAAAATAAA
Found at i:34225745 original size:14 final size:15
Alignment explanation
Indices: 34225728--34225762 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
34225718 TTAATTAATT
34225728 AATTTTAC-ATTTTC
1 AATTTTACAATTTTC
34225742 AATTTT-CAATTTTC
1 AATTTTACAATTTTC
34225756 AATTTTA
1 AATTTTA
34225763 ATAATCTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 18 0.95
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (15 bp):
AATTTTACAATTTTC
Found at i:34225746 original size:7 final size:7
Alignment explanation
Indices: 34225736--34225761 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
34225726 TTAATTTTAC
34225736 ATTTTCA
1 ATTTTCA
34225743 ATTTTCA
1 ATTTTCA
34225750 ATTTTCA
1 ATTTTCA
34225757 ATTTT
1 ATTTT
34225762 AATAATCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTCA
Done.