Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 113 of 185
Found at i:35402618 original size:23 final size:23
Alignment explanation
Indices: 35402586--35402635 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
35402576 TGAACTTAAT
**
35402586 AATTGCTTCTACATTGGGGTCTA
1 AATTGCTTCTACATCAGGGTCTA
* *
35402609 AATTGTTTCTATATCAGGGTCTA
1 AATTGCTTCTACATCAGGGTCTA
35402632 AATT
1 AATT
35402636 TGACAATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
AATTGCTTCTACATCAGGGTCTA
Found at i:35414696 original size:41 final size:42
Alignment explanation
Indices: 35414639--35414761 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 42
35414629 GCTTACAGAA
*
35414639 AAAAAAACGCCGCT-AAAGATCATGTTCGT-TAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAAG-TAATGTTC-TATAGCGGCGCTTAG
*
35414681 AAAAAAA-GCCTCTAAAAGTAATGTTCTATAGCGGCGCTT-G
1 AAAAAAACGCCGCTAAAAGTAATGTTCTATAGCGGCGCTTAG
** * * * *
35414721 TTCAAAAATGCTGCTAAAAGTAGTGTTCTTTAGCGGCGCTT
1 -AAAAAAACGCCGCTAAAAGTAATGTTCTATAGCGGCGCTT
35414762 GTTTCACAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
40 2 0.03
41 28 0.41
42 39 0.57
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAAGTAATGTTCTATAGCGGCGCTTAG
Found at i:35414728 original size:42 final size:42
Alignment explanation
Indices: 35414682--35414764 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
35414672 GGCGCTTAGA
35414682 AAAAAAGCCT-CTAAAAGTAATGTTCTATAGCGGCGCTTGTTC
1 AAAAAAG-CTGCTAAAAGTAATGTTCTATAGCGGCGCTTGTTC
* * *
35414724 AAAAATGCTGCTAAAAGTAGTGTTCTTTAGCGGCGCTTGTT
1 AAAAAAGCTGCTAAAAGTAATGTTCTATAGCGGCGCTTGTT
35414765 TCACAAATGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 2 0.05
42 35 0.95
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (42 bp):
AAAAAAGCTGCTAAAAGTAATGTTCTATAGCGGCGCTTGTTC
Found at i:35415258 original size:21 final size:21
Alignment explanation
Indices: 35415196--35415264 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
35415186 GCTTCTATCG
* * *
35415196 CTGCTTCTCTCACTGCGGCAT
1 CTGCTTCTCTCGCTGCAGCCT
*
35415217 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
35415238 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
35415259 CAGCTT
1 CTGCTT
35415265 TAAGTTGTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.06, C:0.42, G:0.19, T:0.33
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:35419616 original size:104 final size:104
Alignment explanation
Indices: 35419434--35419802 Score: 535
Period size: 104 Copynumber: 3.6 Consensus size: 104
35419424 AACCGTTATC
** * *
35419434 GGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCAGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
*
35419499 ATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATAA
* * * *
35419538 GTTGGATATCGTACTTAGCATCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
*
35419603 ATCAGCACATAGCAACCCCC-TTTTCATTTCAAAAATAA
66 ATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATAA
* * *
35419641 GGTGGATATCGCACTTAACACCACCAATGAAATCGGGGAATTAGCACTTAGTAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
** *
35419706 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAT
65 AATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATAA
* * **
35419746 GGTGGACA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
35419803 TTTATATACA
Statistics
Matches: 235, Mismatches: 28, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
103 66 0.28
104 148 0.63
105 21 0.09
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATAA
Found at i:35419973 original size:30 final size:29
Alignment explanation
Indices: 35419939--35420003 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
35419929 TAATCCACCA
35419939 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
35419969 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
35419999 CCCAA
1 CCCAA
35420004 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:35419977 original size:31 final size:30
Alignment explanation
Indices: 35419946--35420003 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35419936 CCACCCAACT
35419946 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
35419976 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
35420004 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:35423386 original size:9 final size:9
Alignment explanation
Indices: 35423351--35423674 Score: 267
Period size: 9 Copynumber: 36.2 Consensus size: 9
35423341 TTAGACAATA
35423351 ATGTAAGTT
1 ATGTAAGTT
*
35423360 A-GGAAGGTT
1 ATGTAA-GTT
35423369 ATGT-A-TT
1 ATGTAAGTT
35423376 ATGTAAGTT
1 ATGTAAGTT
35423385 ATGTAAGTT
1 ATGTAAGTT
*
35423394 ATGTAATTT
1 ATGTAAGTT
*
35423403 ATGTAAGTA
1 ATGTAAGTT
35423412 ATGTAAGTT
1 ATGTAAGTT
* *
35423421 ATTTAATTT
1 ATGTAAGTT
35423430 ATGTAAGTT
1 ATGTAAGTT
*
35423439 ATGTAAGAT
1 ATGTAAGTT
35423448 ATGTAAGTT
1 ATGTAAGTT
35423457 ATGTAAGTT
1 ATGTAAGTT
* *
35423466 ATTTAATTT
1 ATGTAAGTT
35423475 ATGTAAGTT
1 ATGTAAGTT
35423484 ATGTAAGTT
1 ATGTAAGTT
* *
35423493 ATTTAATTT
1 ATGTAAGTT
35423502 ATGTAAGCAATT
1 ATGTAAG---TT
* * *
35423514 -TAGAAAAAATA
1 AT-G--TAAGTT
35423525 ATGTAAGTT
1 ATGTAAGTT
35423534 ATGT-A-TT
1 ATGTAAGTT
*
35423541 ATGTAAATT
1 ATGTAAGTT
35423550 ATGTACTAAGTT
1 ATG---TAAGTT
35423562 ATGT-A-TT
1 ATGTAAGTT
* *
35423569 ATGTAAATA
1 ATGTAAGTT
*
35423578 ATTTAAGTT
1 ATGTAAGTT
*
35423587 AT-TTA-TT
1 ATGTAAGTT
35423594 ATGTAAG-T
1 ATGTAAGTT
35423602 -TGTAAGTT
1 ATGTAAGTT
*
35423610 ATTTAAGTT
1 ATGTAAGTT
35423619 ATGTAAGTT
1 ATGTAAGTT
*
35423628 ATGTAAATT
1 ATGTAAGTT
* *
35423637 ATTTAATTT
1 ATGTAAGTT
*
35423646 ATGTAAGGT
1 ATGTAAGTT
35423655 ATGTAAGTT
1 ATGTAAGTT
35423664 ATGTAAGTT
1 ATGTAAGTT
35423673 AT
1 AT
35423675 ATACTTTAAA
Statistics
Matches: 251, Mismatches: 42, Indels: 44
0.74 0.12 0.13
Matches are distributed among these distances:
7 28 0.11
8 14 0.06
9 191 0.76
10 1 0.00
11 3 0.01
12 12 0.05
14 2 0.01
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:35423568 original size:28 final size:25
Alignment explanation
Indices: 35423520--35423599 Score: 106
Period size: 25 Copynumber: 3.1 Consensus size: 25
35423510 AATTTAGAAA
*
35423520 AAATAATGTAAGTTATGTATTATGT
1 AAATAATTTAAGTTATGTATTATGT
*
35423545 AAATTATGTACTAAGTTATGTATTATGT
1 AAATAAT-T--TAAGTTATGTATTATGT
*
35423573 AAATAATTTAAGTTATTTATTATGT
1 AAATAATTTAAGTTATGTATTATGT
35423598 AA
1 AA
35423600 GTTGTAAGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
25 24 0.50
27 1 0.02
28 23 0.48
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.46
Consensus pattern (25 bp):
AAATAATTTAAGTTATGTATTATGT
Found at i:35423721 original size:20 final size:19
Alignment explanation
Indices: 35423679--35423721 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
35423669 AGTTATATAC
*
35423679 TTTAAAAATTGTTATGTAA
1 TTTAAAAATTGTTATGCAA
35423698 TTTAAAAATTGTTATGCAA
1 TTTAAAAATTGTTATGCAA
35423717 GTTTA
1 -TTTA
35423722 TATGCAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.47
Consensus pattern (19 bp):
TTTAAAAATTGTTATGCAA
Found at i:35423727 original size:12 final size:12
Alignment explanation
Indices: 35423710--35423734 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35423700 TAAAAATTGT
35423710 TATGCAAGTTTA
1 TATGCAAGTTTA
35423722 TATGCAAGTTTA
1 TATGCAAGTTTA
35423734 T
1 T
35423735 GTATTGTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TATGCAAGTTTA
Found at i:35423860 original size:17 final size:18
Alignment explanation
Indices: 35423828--35423861 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
35423818 TGATTGATAA
35423828 ATTTTGAAAAAAATATAG
1 ATTTTGAAAAAAATATAG
*
35423846 ATTTT-AAAAATATATA
1 ATTTTGAAAAAAATATA
35423862 TTAAAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
ATTTTGAAAAAAATATAG
Found at i:35423925 original size:19 final size:19
Alignment explanation
Indices: 35423897--35423937 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
35423887 AGTTATGTAA
35423897 GTTATATAATTTAAAAATT
1 GTTATATAATTTAAAAATT
*
35423916 GTTATGTAATTTAAAAATT
1 GTTATATAATTTAAAAATT
35423935 GTT
1 GTT
35423938 TACTAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
GTTATATAATTTAAAAATT
Found at i:35425068 original size:22 final size:22
Alignment explanation
Indices: 35425043--35425088 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
35425033 AAAATTTTCT
35425043 TAAATTTTATACTAATTAAACC
1 TAAATTTTATACTAATTAAACC
*
35425065 TAAATTTTATACTGATTAAACC
1 TAAATTTTATACTAATTAAACC
35425087 TA
1 TA
35425089 GGTAGAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (22 bp):
TAAATTTTATACTAATTAAACC
Found at i:35426953 original size:21 final size:21
Alignment explanation
Indices: 35426929--35426979 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
35426919 TTAACCTAGA
35426929 CCCTAAACCACAACCCTTATC
1 CCCTAAACCACAACCCTTATC
35426950 CCCTAAACCACAACCCTTATC
1 CCCTAAACCACAACCCTTATC
35426971 CCCTAAACC
1 CCCTAAACC
35426980 CTAAATCGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.49, G:0.00, T:0.18
Consensus pattern (21 bp):
CCCTAAACCACAACCCTTATC
Found at i:35430366 original size:15 final size:16
Alignment explanation
Indices: 35430346--35430387 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
35430336 CTTTTGAAAA
35430346 AGTTTTTAATTTTAT-
1 AGTTTTTAATTTTATG
*
35430361 AGTTTTTTATTTTTATG
1 AG-TTTTTAATTTTATG
*
35430378 AATTTTTAAT
1 AGTTTTTAAT
35430388 AATTTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 2 0.09
16 19 0.86
17 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (16 bp):
AGTTTTTAATTTTATG
Found at i:35443969 original size:5 final size:5
Alignment explanation
Indices: 35443952--35443995 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
35443942 AGGTAGTTTC
*
35443952 TTTAT TATTAT TTTA- TTTAG TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT T-TTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
35443996 AAGAAGGAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
4 4 0.11
5 27 0.75
6 5 0.14
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:35443974 original size:24 final size:24
Alignment explanation
Indices: 35443945--35443993 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
35443935 TATTGAGAGG
35443945 TAGTTT-CTTTATTATTATTTTATT
1 TAGTTTACTTTATT-TTATTTTATT
*
35443969 TAGTTTATTTTATTTTATTTTATT
1 TAGTTTACTTTATTTTATTTTATT
35443993 T
1 T
35443994 TAAAGAAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (24 bp):
TAGTTTACTTTATTTTATTTTATT
Found at i:35445438 original size:131 final size:131
Alignment explanation
Indices: 35445204--35445476 Score: 465
Period size: 131 Copynumber: 2.1 Consensus size: 131
35445194 GAAAATCTTG
* * *
35445204 AAAATAAAGACAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAATTTATTGGGTTTCAA
1 AAAATAAAGGCAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCAA
*
35445269 TTTTTCTCGCGTTGAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACCAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
35445334 A
131 A
* *
35445335 AAAATAAAGGCAATATTCCGTATTTGGAAATTCGAGAAGTTGTGTCCTAACTTACTGGGTTTCAA
1 AAAATAAAGGCAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCAA
**
35445400 TTTTTCTCGCGTTGAACCTAAATAATTAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACCAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
35445465 A
131 A
*
35445466 AAAACAAAGGC
1 AAAATAAAGGC
35445477 GAGCTTATTC
Statistics
Matches: 133, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 133 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (131 bp):
AAAATAAAGGCAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCAA
TTTTTCTCGCGTTGAACCTAAATAACCAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
A
Found at i:35446026 original size:18 final size:19
Alignment explanation
Indices: 35446003--35446042 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
35445993 CTTTCATTTC
35446003 ATTTTTATG-GTTTGCATT
1 ATTTTTATGTGTTTGCATT
*
35446021 ATTTTTATGTGTTTGCTTT
1 ATTTTTATGTGTTTGCATT
35446040 ATT
1 ATT
35446043 GGTTCGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.65
Consensus pattern (19 bp):
ATTTTTATGTGTTTGCATT
Found at i:35450164 original size:18 final size:17
Alignment explanation
Indices: 35450129--35450171 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
35450119 AAAATATTTC
35450129 ATAAAAAAATAAAGAAA
1 ATAAAAAAATAAAGAAA
35450146 ATAAGAAAAAT-AAGAAAA
1 ATAA-AAAAATAAAG-AAA
35450164 ATAAAAAA
1 ATAAAAAA
35450172 GAGATACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.12
Consensus pattern (17 bp):
ATAAAAAAATAAAGAAA
Found at i:35451190 original size:45 final size:45
Alignment explanation
Indices: 35451138--35451300 Score: 152
Period size: 45 Copynumber: 3.7 Consensus size: 45
35451128 AAATTACAAG
*
35451138 TCTTATCTCCTTGAAGTTACAGTAGAACAGACTAAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTACAGTAGAACAGACTAAAGATAGCAAA
* * ** * ** * *
35451183 CCTTATCTCCTTGAAGTTGTAGTAGAGCAGGTTGAAGATA-CAAG
1 TCTTATCTCCCTGAAGTTACAGTAGAACAGACTAAAGATAGCAAA
* * * *
35451227 TCTTATCTCCCTAAAGTTGCAG--GAGCAGACTAAAGATAGCGAA
1 TCTTATCTCCCTGAAGTTACAGTAGAACAGACTAAAGATAGCAAA
* * *
35451270 TCTTATTTCCCTGAAGTCACAGTGGAACAGA
1 TCTTATCTCCCTGAAGTTACAGTAGAACAGA
35451301 TTGAAGCTAT
Statistics
Matches: 93, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 13 0.14
43 20 0.22
44 21 0.23
45 39 0.42
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTACAGTAGAACAGACTAAAGATAGCAAA
Found at i:35451226 original size:89 final size:87
Alignment explanation
Indices: 35451102--35451286 Score: 228
Period size: 89 Copynumber: 2.1 Consensus size: 87
35451092 AATCTTACCC
* * * * * *
35451102 CCCTCAAGTTGTAGTGGGGTAGGTTGAAATTACAAGTCTTATCTCCTTGAAGTTACAGTAGAACA
1 CCCTGAAGTTGTAGTAGAGCAGGTTGAAATTACAAGTCTTATCTCCCTAAAGTTACAG--GAACA
35451167 GACTAAAGATAGCAAACCTTATCT
64 GACTAAAGATAGCAAACCTTATCT
* * *
35451191 CCTTGAAGTTGTAGTAGAGCAGGTTGAAGA-TACAAGTCTTATCTCCCTAAAGTTGCAGGAGCAG
1 CCCTGAAGTTGTAGTAGAGCAGGTTGAA-ATTACAAGTCTTATCTCCCTAAAGTTACAGGAACAG
* * *
35451255 ACTAAAGATAGCGAATCTTATTT
65 ACTAAAGATAGCAAACCTTATCT
35451278 CCCTGAAGT
1 CCCTGAAGT
35451287 CACAGTGGAA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
87 33 0.40
89 48 0.59
90 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (87 bp):
CCCTGAAGTTGTAGTAGAGCAGGTTGAAATTACAAGTCTTATCTCCCTAAAGTTACAGGAACAGA
CTAAAGATAGCAAACCTTATCT
Found at i:35451245 original size:44 final size:44
Alignment explanation
Indices: 35451050--35451758 Score: 363
Period size: 44 Copynumber: 15.8 Consensus size: 44
35451040 TCATGACGAA
**
35451050 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACTAA-
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAC-AAG
* * * * * * * *
35451094 TCTTACCCCCCTCAAGTTGTAGTGGGGTAGGTTGAA-ATTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGA-TACAAG
* * * * * *
35451138 TCTTATCTCCTTGAAGTTACAGTAGAACAGACTAAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-CAAG
* * * *
35451183 CCTTATCTCCTTGAAGTTGTAGTAGAGCAGGTTGAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAG
* * *
35451227 TCTTATCTCCCTAAAGTTGCAG--GAGCAGACTAAAGATAGCGAA-
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-C-AAG
* ** * * *
35451270 TCTTATTTCCCTGAAGTCACAGTGGAACAGATTGAAGCTATAAATTACAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG--AT--A-CA-AG
* * * *
35451320 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T-CATAT-CAAG
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAG
* * *
35451362 TCTTATCTCCCTGAAGTTGCACTGGAGCAGACTGAAGATAGCGAA-
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-C-AAG
* * * * * *
35451407 TCTTATTTCCCTAAAGTCGCAGCAGAACAGATTGAAGCTATAAGTTACAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG--AT-A--CA-AG
* * * *
35451457 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CATAT-CAAA
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAG
* * * * *
35451499 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAAATAAATCAA-
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGAT--A-CAAG
* * *
35451545 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGAGCGGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGA-----TACAAG
** ** *
35451594 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGCCACGAAC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAC-AAG
* * *
35451639 T-TTATCTCTCTGAAGTTGCAGTGGAGCA-AGTTGAAG-TAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TTGAAGAT-ACAAG
* * * * * *
35451682 CCTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGCTACTAA-
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAC-AAG
* * *
35451726 TCCTATCTCCCTGAAGTTACAGTGGAGCAGATT
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATT
35451759 AAAACGATGA
Statistics
Matches: 502, Mismatches: 117, Indels: 92
0.71 0.16 0.13
Matches are distributed among these distances:
41 54 0.11
42 18 0.04
43 32 0.06
44 172 0.34
45 83 0.17
46 35 0.07
47 11 0.02
48 6 0.01
49 39 0.08
50 2 0.00
51 50 0.10
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAG
Found at i:35451305 original size:87 final size:88
Alignment explanation
Indices: 35451132--35451306 Score: 208
Period size: 87 Copynumber: 2.0 Consensus size: 88
35451122 AGGTTGAAAT
* * *
35451132 TACAAGTCTTATCTCCTTGAAGTTACAGTAGAACAGACTAAAGATAGCAAACCTTATCTCCTTGA
1 TACAAGTCTTATCTCCCTAAAGTTACAG-AGAACAGACTAAAGATAGCAAACCTTATCTCCCTGA
*** * *
35451197 AGTTGTAGTAGAGCAGGTTGAAGA
65 AGTCACAGTAGAACAGATTGAAGA
* * * * *
35451221 TACAAGTCTTATCTCCCTAAAGTTGCAG-GAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAA
1 TACAAGTCTTATCTCCCTAAAGTTACAGAGAACAGACTAAAGATAGCAAACCTTATCTCCCTGAA
*
35451285 GTCACAGTGGAACAGATTGAAG
66 GTCACAGTAGAACAGATTGAAG
35451307 CTATAAATTA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
87 47 0.65
89 25 0.35
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (88 bp):
TACAAGTCTTATCTCCCTAAAGTTACAGAGAACAGACTAAAGATAGCAAACCTTATCTCCCTGAA
GTCACAGTAGAACAGATTGAAGA
Found at i:35451409 original size:137 final size:136
Alignment explanation
Indices: 35451223--35451627 Score: 548
Period size: 137 Copynumber: 3.0 Consensus size: 136
35451213 GTTGAAGATA
* *
35451223 CAAGTCTTATCTCCCTAAAGTTGCA-GGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGT
1 CAAGTCTTATCTCCCTGAAGTTGCATGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTAAAGT
* * *
35451287 CACAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
66 CGCAGTGGAACAGATTGAAGCTATAAGTTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
35451352 TCATAT
131 TCATAT
*
35451358 CAAGTCTTATCTCCCTGAAGTTGCACTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTAAAG
1 CAAGTCTTATCTCCCTGAAGTTGCA-TGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTAAAG
**
35451423 TCGCAGCAGAACAGATTGAAGCTATAAGTTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
65 TCGCAGTGGAACAGATTGAAGCTATAAGTTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
35451488 ATCATAT
130 ATCATAT
** ** * * *
35451495 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAAATAAATC-AATCTTATCTCCCTAA
1 CAAGTCTTATCTCCCTGAAGTTGCA-TGGAGCAGACTAAAGAT--AGCGAATCTTATTTCCCTAA
* * *** * *
35451559 AGTTGCAGTGGAGCAGATTGAAG--AGCGGTTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGC
63 AGTCGCAGTGGAACAGATTGAAGCTATAAGTTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
35451622 AGATCA
128 AGATCA
35451628 AAGCCACGAA
Statistics
Matches: 240, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
135 24 0.10
136 41 0.17
137 139 0.58
138 34 0.14
139 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (136 bp):
CAAGTCTTATCTCCCTGAAGTTGCATGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTAAAGT
CGCAGTGGAACAGATTGAAGCTATAAGTTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
TCATAT
Found at i:35451784 original size:132 final size:136
Alignment explanation
Indices: 35451452--35451763 Score: 318
Period size: 136 Copynumber: 2.3 Consensus size: 136
35451442 AGCTATAAGT
* * * * * * *
35451452 TACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-ATATCA--AACCT-TATCTCCCTGA
1 TACAAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATCAAAACCACGAA-CTATATCTCTCTGA
* *
35451513 AGTTGCAGTGGAGCAGGTTAAAAATAAATCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
65 AGTTGCAGTGGAGCAAGTTAAAAATAAA-CAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
35451578 GAAGAGCGG
129 GAAGAGC-G
* * * *
35451587 TTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGCCACGAACTTTATCTCTCTGA
1 -TACAAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATCAAAACCACGAACTATATCTCTCTGA
* * * * * *
35451652 AGTTGCAGTGGAGCAAGTT-GAAGT-AACAAACCTTATCTCTCTGAAGTTGCAGTGGAGTAGGTT
65 AGTTGCAGTGGAGCAAGTTAAAAATAAAC-AACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
35451715 G-A-AGC-
129 GAAGAGCG
* * *
35451720 TACTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAAC
1 TACAAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATCAAAAC
35451764 GATGAATCCT
Statistics
Matches: 151, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
132 38 0.25
135 3 0.02
136 39 0.26
137 36 0.24
138 5 0.03
139 30 0.20
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (136 bp):
TACAAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATCAAAACCACGAACTATATCTCTCTGAA
GTTGCAGTGGAGCAAGTTAAAAATAAACAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
AGAGCG
Found at i:35453661 original size:131 final size:131
Alignment explanation
Indices: 35453427--35453699 Score: 465
Period size: 131 Copynumber: 2.1 Consensus size: 131
35453417 GAAAATCTTG
* * *
35453427 AAAATAAAGACAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAATTTATTGGGTTTCAA
1 AAAATAAAGGCAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCAA
*
35453492 TTTTTCTCGCGTTGAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACCAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
35453557 A
131 A
* *
35453558 AAAATAAAGGCAATATTCCGTATTTGGAAATTCGAGAAGTTGTGTCCTAACTTACTGGGTTTCAA
1 AAAATAAAGGCAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCAA
**
35453623 TTTTTCTCGCGTTGAACCTAAATAATTAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACCAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
35453688 A
131 A
*
35453689 AAAACAAAGGC
1 AAAATAAAGGC
35453700 GAGCTTATTC
Statistics
Matches: 133, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 133 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (131 bp):
AAAATAAAGGCAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCAA
TTTTTCTCGCGTTGAACCTAAATAACCAAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
A
Found at i:35456019 original size:17 final size:19
Alignment explanation
Indices: 35455987--35456022 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
35455977 TCAAATCATT
35455987 TAAATTATTAAAAAATAAA
1 TAAATTATTAAAAAATAAA
35456006 TAAA-TATT-AAAAATAAA
1 TAAATTATTAAAAAATAAA
35456023 AATTAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 4 0.24
19 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAATTATTAAAAAATAAA
Found at i:35457215 original size:4 final size:4
Alignment explanation
Indices: 35457206--35457241 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
35457196 AACATAAATC
35457206 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
35457242 GTAGGGGTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:35460743 original size:18 final size:18
Alignment explanation
Indices: 35460716--35460755 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
35460706 CAGGTGCGTT
* *
35460716 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
35460734 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
35460752 TCCT
1 TCCT
35460756 TTTTCGAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:35461388 original size:22 final size:21
Alignment explanation
Indices: 35461331--35462365 Score: 808
Period size: 22 Copynumber: 47.9 Consensus size: 21
35461321 CCCTAATCCT
*
35461331 AACCCTTAACTTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35461352 AACCCTTAACTTAAAAACGCTA
1 AACCCTTAACCTAAAAAC-CTA
* *
35461374 AATCCTAAACCTAAAAACCATA
1 AACCCTTAACCTAAAAACC-TA
* * *
35461396 AACCCTTAAGCTAAAAACTTT
1 AACCCTTAACCTAAAAACCTA
35461417 AACCCTTAACCTAAAAACCTTA
1 AACCCTTAACCTAAAAACC-TA
35461439 AACCCTTAACCTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTA
* * *
35461461 AA-CCTTAAACTTAAAACCCCA
1 AACCCTT-AACCTAAAAACCTA
*
35461482 AACCCTTAACTTAAAAACCATA
1 AACCCTTAACCTAAAAACC-TA
* * ** *
35461504 AACTCTTAACTTAAATTTCATA
1 AACCCTTAACCTAAA-AACCTA
35461526 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35461547 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTA
* * **
35461569 AACCTTTAACTTAAATTCCATA
1 AACCCTTAACCTAAAAACC-TA
35461591 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35461612 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTA
* * **
35461634 AACCTTTAACTTAAATTCCATA
1 AACCCTTAACCTAAAAACC-TA
35461656 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35461677 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTA
* * **
35461699 AACCTTTAACTTAAATTCCATA
1 AACCCTTAACCTAAAAACC-TA
35461721 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35461742 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTA
* * **
35461764 AACCTTTAACTTAAATTCCATA
1 AACCCTTAACCTAAAAACC-TA
35461786 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35461807 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTA
* * ** *
35461829 AACCCTTAGCTTAAATTCTATA
1 AACCCTTAACCTAAAAAC-CTA
* *
35461851 AACCATTAAACTAAAAACCT-
1 AACCCTTAACCTAAAAACCTA
* * **
35461871 AATCCTTAACTTAAATTCCATA
1 AACCCTTAACCTAAAAACC-TA
*
35461893 AACCCTTAACCTAAAAACCTT
1 AACCCTTAACCTAAAAACCTA
*
35461914 AACCCTTAACTTAAAAACCATA
1 AACCCTTAACCTAAAAACC-TA
* *
35461936 AACCCTTAACTTAAAACCCATA
1 AACCCTTAACCTAAAAACC-TA
*
35461958 AACCCTTAACCTAAAAACCCTT
1 AACCCTTAACCTAAAAA-CCTA
35461980 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
* * **
35462001 AACCTTTAACTTAAATTCCATA
1 AACCCTTAACCTAAAAACC-TA
35462023 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
* **
35462044 AA-CCTTAACTTAAATTCCATA
1 AACCCTTAACCTAAAAACC-TA
*
35462065 AACTCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
* *
35462086 AACTCTTAACTTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTA
*
35462108 AACTCTTAACCTAAAAATCCTA
1 AACCCTTAACCTAAAAA-CCTA
* *
35462130 AACCCTTAACTTAAAGACCATA
1 AACCCTTAACCTAAAAACC-TA
35462152 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35462173 AACCCTTAA-CTTAAAACTCGTA
1 AACCCTTAACCTAAAAAC-C-TA
* ** *
35462195 AACCCTTAACTTAAATTTCATA
1 AACCCTTAACCTAAA-AACCTA
35462217 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
*
35462238 AACCCTTAA-CTTAAAACTCGTA
1 AACCCTTAACCTAAAAAC-C-TA
* ** *
35462260 AACCCTTAACTTAAATTTCATA
1 AACCCTTAACCTAAA-AACCTA
35462282 AACCCTTAACCTAAAAACCCT-
1 AACCCTTAACCTAAAAA-CCTA
* *
35462303 AACCCTTAACTTAAAAACTATA
1 AACCCTTAACCTAAAAAC-CTA
* * *
35462325 AACCCTTAACTTAAAATTCATA
1 AACCCTTAACCTAAAA-ACCTA
35462347 AACCCTTAACCTAAAAACC
1 AACCCTTAACCTAAAAACC
35462366 CTAACATAAA
Statistics
Matches: 826, Mismatches: 135, Indels: 106
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.00
20 43 0.05
21 266 0.32
22 485 0.59
23 26 0.03
24 2 0.00
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.26
Consensus pattern (21 bp):
AACCCTTAACCTAAAAACCTA
Found at i:35461449 original size:14 final size:14
Alignment explanation
Indices: 35461431--35461470 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
35461421 CTTAACCTAA
35461431 AAACCTTAAACCCT
1 AAACCTTAAACCCT
* *
35461445 TAACCTAAAAACCCT
1 AAACCT-TAAACCCT
35461460 AAACCTTAAAC
1 AAACCTTAAAC
35461471 TTAAAACCCC
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
AAACCTTAAACCCT
Found at i:35462366 original size:65 final size:64
Alignment explanation
Indices: 35461328--35462370 Score: 1072
Period size: 65 Copynumber: 16.1 Consensus size: 64
35461318 TAACCCTAAT
* * *
35461328 CCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACGC-TAAATCCTAAACCTAAAAAC
1 CCTAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAAC-CATAAACCCTTAACCTAAAAAC
* * ** * *
35461392 CATAAACCCTTAAGCTAAAAACTTTAACCCTTAACCTAAAAACCTTAAACCCTTAACCTAAAAAC
1 CCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * * * * * ***
35461457 CCTAAACCTTAAACTTAAAACCCCAAACCCTTAACTTAAAAACCATAAACTCTTAACTTAAATTT
1 CCTAACCCTT-AACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * * * **
35461522 CATAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAATTC
1 CCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * * * **
35461587 CATAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAATTC
1 CCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * * * **
35461652 CATAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAATTC
1 CCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * * * **
35461717 CATAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAATTC
1 CCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * * * **
35461782 CATAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAGCTTAAATTC
1 CCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
** * * * **
35461847 TATAAACCATTAAACTAAAAA-CCTAATCCTTAACTTAAATTCCATAAACCCTTAACCTAAAAAC
1 CCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * * *
35461911 CTTAACCCTTAACTTAAAAACCATAAACCCTTAACTTAAAACCCATAAACCCTTAACCTAAAAAC
1 CCTAACCCTTAACCTAAAAACCCT-AACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* **
35461976 CCTTAACCCTTAACCTAAAAACCCTAACCTTTAACTTAAATTCCATAAACCCTTAACCTAAAAAC
1 CC-TAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* ** * * * * * *
35462041 CCTAA-CCTTAACTTAAATTCCATAAACTCTTAACCTAAAAACCCT-AACTCTTAACTTAAAAAC
1 CCTAACCCTTAACCTAAAAACCCT-AACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
* * *
35462104 CCTAAACTCTTAACCTAAAAATCCTAAACCCTTAACTTAAAGACCATAAACCCTTAACCTAAAAA
1 CCT-AACCCTTAACCTAAAAACCCT-AACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAA
35462169 C
64 C
* * ***
35462170 CCTAACCCTTAA-CTTAAAACTCGTAAACCCTTAACTTAAATTTCATAAACCCTTAACCTAAAAA
1 CCTAACCCTTAACCTAAAAAC-CCT-AACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAA
35462234 C
64 C
* * ***
35462235 CCTAACCCTTAA-CTTAAAACTCGTAAACCCTTAACTTAAATTTCATAAACCCTTAACCTAAAAA
1 CCTAACCCTTAACCTAAAAAC-CCT-AACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAA
35462299 C
64 C
* ** **
35462300 CCTAACCCTTAACTTAAAAACTATAAACCCTTAACTTAAAATTCATAAACCCTTAACCTAAAAAC
1 CCTAACCCTTAACCTAAAAACCCT-AACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
35462365 CCTAAC
1 CCTAAC
35462371 ATAAAGGCTT
Statistics
Matches: 870, Mismatches: 96, Indels: 25
0.88 0.10 0.03
Matches are distributed among these distances:
63 47 0.05
64 73 0.08
65 699 0.80
66 51 0.06
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.26
Consensus pattern (64 bp):
CCTAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAC
Found at i:35466080 original size:127 final size:126
Alignment explanation
Indices: 35465577--35466184 Score: 739
Period size: 125 Copynumber: 4.8 Consensus size: 126
35465567 CATGCTACTA
* * * * * * *
35465577 TAGCAAAAGCGCATCCACGTGGGTGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCTAGAA
1 TAGCAAAAGCGCGTCCATGAGGGCGCGATTTCAGAAATTCTTCTCA-AATAGCATCTTGCTTGAA
** * * * * *
35465641 GC-AATTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCAACTG
65 GCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATCATTTCTTCCAAGACCAACTG
* * * * * *
35465702 TAGCAAAAGCGCATCCACGAGGGCGCGATTTCAGAAATTCTTCTCAGATCGCATCCTGCTTGAAT
1 TAGCAAAAGCGCGTCCATGAGGGCGCGATTTCAGAAATTCTTCTCAAATAGCATCTTGCTTGAAG
* ** * * *
35465767 CTTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAAAAAAAATT-TT--AGGACCTACTG
66 CGTTTTTTATACTATTTGCTCAGAAACGTCAACTC--AAAATCATTTCTTCCAAGACCAACTG
* * * * *
35465827 TAGCAAAAGCGCGTCCACT-TGGACGCGATTTCACAAATTCTTCTCATAA-AGCATCCTAG-TAG
1 TAGCAAAAGCGCGTCCA-TGAGGGCGCGATTTCAGAAATTCTTCTCA-AATAGCAT-CTTGCTTG
* *
35465889 AAGCG-ATTTTATACTATTTGCTCAAAAACGTCAACTCAAAATCATTTCTTCCAAGACCAACTG
63 AAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATCATTTCTTCCAAGACCAACTG
35465952 TAGCAAAAGCGCGTCCATGAGGGCGCGATTTCAGAAATTCTTCTCAAATAGCATCTTGCTTGAAG
1 TAGCAAAAGCGCGTCCATGAGGGCGCGATTTCAGAAATTCTTCTCAAATAGCATCTTGCTTGAAG
*
35466017 CGTTTTTTCATACTATTTGCTCAAAAACGTCAACTCAAAATCATTTCTTCCAAGACCAACTG
66 CGTTTTTT-ATACTATTTGCTCAGAAACGTCAACTCAAAATCATTTCTTCCAAGACCAACTG
*
35466079 TAGCAAAAGCGCGTCCATGAGGGCGCAATTTCAGAAATTCTTCTCAAATAGCATCTTGCTTGAAG
1 TAGCAAAAGCGCGTCCATGAGGGCGCGATTTCAGAAATTCTTCTCAAATAGCATCTTGCTTGAAG
* * *
35466144 CGTTTTTTCATACTATTTGCCCAGAAACATCAACTCGAAAT
66 CGTTTTTT-ATACTATTTGCTCAGAAACGTCAACTCAAAAT
35466185 AAATTTTTCA
Statistics
Matches: 423, Mismatches: 45, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
122 7 0.02
123 2 0.00
124 37 0.09
125 178 0.42
126 37 0.09
127 156 0.37
128 6 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (126 bp):
TAGCAAAAGCGCGTCCATGAGGGCGCGATTTCAGAAATTCTTCTCAAATAGCATCTTGCTTGAAG
CGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATCATTTCTTCCAAGACCAACTG
Found at i:35467389 original size:16 final size:16
Alignment explanation
Indices: 35467368--35467403 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
35467358 GGCTTCTTAT
35467368 TTATAGAGGGGGAAAA
1 TTATAGAGGGGGAAAA
35467384 TTATAGAGGGGGAAAA
1 TTATAGAGGGGGAAAA
35467400 TTAT
1 TTAT
35467404 TTTGTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (16 bp):
TTATAGAGGGGGAAAA
Found at i:35468446 original size:26 final size:27
Alignment explanation
Indices: 35468394--35468446 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
35468384 GGAATCAAGG
*
35468394 ATTCAAAATGTTTGAAACTAATCTACT
1 ATTCAAAATGATTGAAACTAATCTACT
*
35468421 ATTCAAATTGATT-AAATCTAAT-TACT
1 ATTCAAAATGATTGAAA-CTAATCTACT
35468447 TGCATTAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.40
Consensus pattern (27 bp):
ATTCAAAATGATTGAAACTAATCTACT
Found at i:35471247 original size:31 final size:31
Alignment explanation
Indices: 35471204--35471262 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
35471194 CTTAACTACC
* *
35471204 CAGTGACTTAAATAAAAACTTTTAAATAGTT
1 CAGTGACATAAATAAAAACTTTCAAATAGTT
*
35471235 CAGTGACATAAATGAAAACTTTCAAATA
1 CAGTGACATAAATAAAAACTTTCAAATA
35471263 ATTTAGTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (31 bp):
CAGTGACATAAATAAAAACTTTCAAATAGTT
Found at i:35476907 original size:17 final size:14
Alignment explanation
Indices: 35476842--35476898 Score: 71
Period size: 14 Copynumber: 4.1 Consensus size: 14
35476832 TGTTTTCTTG
*
35476842 TTATTTTTATTATT
1 TTATTGTTATTATT
* *
35476856 ATT-TTGCTATCATT
1 -TTATTGTTATTATT
35476870 TTATTGTTATTATT
1 TTATTGTTATTATT
35476884 TTATTGTTATTATT
1 TTATTGTTATTATT
35476898 T
1 T
35476899 GGATATTGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
13 2 0.06
14 32 0.89
15 2 0.06
ACGTcount: A:0.21, C:0.04, G:0.05, T:0.70
Consensus pattern (14 bp):
TTATTGTTATTATT
Found at i:35477017 original size:11 final size:11
Alignment explanation
Indices: 35477001--35477025 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
35476991 TATACATAAA
35477001 ATTTTTAATTT
1 ATTTTTAATTT
35477012 ATTTTTAATTT
1 ATTTTTAATTT
35477023 ATT
1 ATT
35477026 GAAAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTTTTAATTT
Found at i:35481353 original size:91 final size:91
Alignment explanation
Indices: 35481244--35481411 Score: 248
Period size: 91 Copynumber: 1.8 Consensus size: 91
35481234 AAAAAATATT
* * * *
35481244 AAATTATATATCACTATTAAATTATATTTAAT-ATTAATTATTTTAAATTGTATAAATTCATATA
1 AAATTATATATCACTATTAAATTATATGTAATAATT-ATTATTTTAAATTATACAAATTCATAAA
35481308 AGAAAATTTATTATCAAGAATTTTATG
65 AGAAAATTTATTATCAAGAATTTTATG
* *
35481335 AAATTATATATTATTATTAAATTATATGTAATAATTATTATTTTAAATTATACAAATTCATAAAA
1 AAATTATATATCACTATTAAATTATATGTAATAATTATTATTTTAAATTATACAAATTCATAAAA
* *
35481400 TATAATTTATTA
66 GAAAATTTATTA
35481412 GTTATAATTA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
91 65 0.96
92 3 0.04
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (91 bp):
AAATTATATATCACTATTAAATTATATGTAATAATTATTATTTTAAATTATACAAATTCATAAAA
GAAAATTTATTATCAAGAATTTTATG
Found at i:35481771 original size:18 final size:17
Alignment explanation
Indices: 35481743--35481777 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
35481733 ATTATTAAGA
*
35481743 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
35481760 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
35481778 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:35481991 original size:44 final size:45
Alignment explanation
Indices: 35481942--35482032 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
35481932 ACCTCTATTC
* * *
35481942 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
35481986 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
35482031 CA
1 CA
35482033 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:35482047 original size:17 final size:16
Alignment explanation
Indices: 35482013--35482081 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
35482003 GATTAGCTAT
35482013 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
35482029 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
35482046 TACACCTCTAATTCAA
1 TACACCTCTAATCCAA
* *
35482062 TACGCCTCTAATCTAA
1 TACACCTCTAATCCAA
35482078 TACA
1 TACA
35482082 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
16 31 0.66
17 16 0.34
ACGTcount: A:0.36, C:0.35, G:0.01, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:35495290 original size:16 final size:18
Alignment explanation
Indices: 35495271--35495309 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
35495261 CTTACTCAAA
35495271 CTTGAACTCAA-TT-AAG
1 CTTGAACTCAAGTTGAAG
*
35495287 CTTGAGCTCAAGTTGAAG
1 CTTGAACTCAAGTTGAAG
35495305 CTTGA
1 CTTGA
35495310 TAATTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 2 0.10
18 8 0.40
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (18 bp):
CTTGAACTCAAGTTGAAG
Found at i:35498480 original size:3 final size:3
Alignment explanation
Indices: 35498472--35498505 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
35498462 GTCCTTGACA
35498472 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
35498506 GAAAACAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:35501318 original size:24 final size:24
Alignment explanation
Indices: 35501263--35501336 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
35501253 CCGGGCTTAA
*
35501263 TAACGGGAAGCTCACAAAGAG-TCT
1 TAACGGGAAGCTC-CAAAGAGCACT
* * *
35501287 ATATCGGGTAGCTCCGAAGAGCACT
1 -TAACGGGAAGCTCCAAAGAGCACT
*
35501312 TAACGGGAAGCTCTAAAGAGCACT
1 TAACGGGAAGCTCCAAAGAGCACT
35501336 T
1 T
35501337 TAGCAGAGAG
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
24 27 0.68
25 13 0.32
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.19
Consensus pattern (24 bp):
TAACGGGAAGCTCCAAAGAGCACT
Found at i:35502703 original size:21 final size:22
Alignment explanation
Indices: 35502662--35502705 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
35502652 CGTAAATATT
*
35502662 TTTATAAATATTTACGGCTCGA
1 TTTATAAATATTGACGGCTCGA
35502684 TTTAT-AATATTGA-GGTCTCGA
1 TTTATAAATATTGACGG-CTCGA
35502705 T
1 T
35502706 ACCTCATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 2 0.10
21 13 0.65
22 5 0.25
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (22 bp):
TTTATAAATATTGACGGCTCGA
Found at i:35507203 original size:21 final size:20
Alignment explanation
Indices: 35507177--35507215 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
35507167 AAATCATGGA
35507177 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGA-TCTTTCT
35507198 TAAATCCAAGCGATCTTT
1 TAAATCCAAGCGATCTTT
35507216 TTGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (20 bp):
TAAATCCAAGCGATCTTTCT
Found at i:35519559 original size:12 final size:12
Alignment explanation
Indices: 35519542--35519566 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35519532 TCTCTAACAC
35519542 GTCGTTTGGTTT
1 GTCGTTTGGTTT
35519554 GTCGTTTGGTTT
1 GTCGTTTGGTTT
35519566 G
1 G
35519567 ATGTATTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.36, T:0.56
Consensus pattern (12 bp):
GTCGTTTGGTTT
Found at i:35522965 original size:82 final size:81
Alignment explanation
Indices: 35522874--35523123 Score: 177
Period size: 82 Copynumber: 3.1 Consensus size: 81
35522864 CATATAAGAA
*
35522874 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATG
1 TATTTATTATTAAGAATTTTATTAAATTATATATTTTAA-TATAATATATTTAATAATAATTATG
35522939 TTTAAATATGATTAAAT
65 TTTAAATATGATTAAAT
* * * * * * * *
35522956 TATTTATTATT---CATATTAATAATCTTATCAAAATTTAA-ATAACA-A--TAACAATAA-TA-
1 TATTTATTATTAAGAATTTTATTAA-ATTAT-ATATTTTAATATAATATATTTAATAATAATTAT
* *
35523012 ATTTACCAA-A--A-CAAAT
64 GTTTA--AATATGATTAAAT
* *
35523028 T-TCTGGTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAAT
1 TAT-T--T-ATTATTAAGAATTTTATTAAATTATATATTTTAA-TATAATATATTTAATAATAAT
*
35523092 TATGTTTAAATATGATTAAAA
61 TATGTTTAAATATGATTAAAT
*
35523113 TATTCATTATT
1 TATTTATTATT
35523124 GATAATAATA
Statistics
Matches: 120, Mismatches: 25, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 5 0.04
75 9 0.08
76 17 0.14
77 4 0.03
78 13 0.11
79 13 0.11
80 4 0.03
81 17 0.14
82 19 0.16
83 4 0.03
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
TATTTATTATTAAGAATTTTATTAAATTATATATTTTAATATAATATATTTAATAATAATTATGT
TTAAATATGATTAAAT
Found at i:35523043 original size:157 final size:157
Alignment explanation
Indices: 35522877--35523186 Score: 530
Period size: 157 Copynumber: 2.0 Consensus size: 157
35522867 ATAAGAATAT
*
35522877 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* * *
35522942 AAATATGATTAAATTATTTATTATTCATATTAATAATCTTATCAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTCATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
35523007 TAATAATTTACCAAAACAAATTTCTGG
131 TAATAATTTACCAAAACAAATTTCTGG
* *
35523034 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
35523099 AAATATGATTAAAATATTCATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTCATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
* *
35523164 TAATCATTTACCAAAATAAATTT
131 TAATAATTTACCAAAACAAATTT
35523187 ATGCTAAGGG
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
157 143 1.00
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTCATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTCTGG
Found at i:35523337 original size:16 final size:16
Alignment explanation
Indices: 35523316--35523367 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
35523306 GATTTGCTAT
35523316 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
35523332 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
35523348 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
35523364 TACA
1 TACA
35523368 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:35524253 original size:14 final size:14
Alignment explanation
Indices: 35524234--35524263 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
35524224 ATATCACACC
35524234 AATCATTTTAGTAG
1 AATCATTTTAGTAG
35524248 AATCATTTTAGTAG
1 AATCATTTTAGTAG
35524262 AA
1 AA
35524264 GAAGACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (14 bp):
AATCATTTTAGTAG
Found at i:35530663 original size:70 final size:71
Alignment explanation
Indices: 35530548--35530679 Score: 203
Period size: 70 Copynumber: 1.9 Consensus size: 71
35530538 AAACGACGTA
* *
35530548 GTTTTGTCTTTTAACTTTAAAAAAAAGTAAACATTTATCAAAACGACGTAATTTTGTCTTTTAAC
1 GTTTTGACTTTTAACTTTAAAAAAAAGTAAACATTTATCAAAACGAAGTAATTTTGTCTTTTAAC
35530613 TTAATT
66 TTAATT
** * *
35530619 GTTTTGACTTTTAACTTTTTAAAAAA-TAAACATTTATTAAAACGAAGTAGTTTTGTCTTTT
1 GTTTTGACTTTTAACTTTAAAAAAAAGTAAACATTTATCAAAACGAAGTAATTTTGTCTTTT
35530680 CGAGTTAAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
70 32 0.58
71 23 0.42
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (71 bp):
GTTTTGACTTTTAACTTTAAAAAAAAGTAAACATTTATCAAAACGAAGTAATTTTGTCTTTTAAC
TTAATT
Found at i:35530988 original size:25 final size:24
Alignment explanation
Indices: 35530960--35531010 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
35530950 ATGAAAAAGA
*
35530960 AAAAAAAAATCTTAAAATCTAATTT
1 AAAAAAAAATCATAAAA-CTAATTT
*
35530985 AAAATAAAATCATAAAACTAATTT
1 AAAAAAAAATCATAAAACTAATTT
35531009 AA
1 AA
35531011 TATATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAAAAAAATCATAAAACTAATTT
Found at i:35535659 original size:27 final size:26
Alignment explanation
Indices: 35535611--35535661 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
35535601 TAGAATTAAT
*
35535611 TTGTTATTCATCATTTGCTTTGTATA
1 TTGTTAATCATCATTTGCTTTGTATA
35535637 TTGTTAATCAATCATGTTG-TTTGTA
1 TTGTTAATC-ATCAT-TTGCTTTGTA
35535662 AGAATTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 8 0.36
27 11 0.50
28 3 0.14
ACGTcount: A:0.22, C:0.10, G:0.14, T:0.55
Consensus pattern (26 bp):
TTGTTAATCATCATTTGCTTTGTATA
Found at i:35545786 original size:11 final size:11
Alignment explanation
Indices: 35545770--35545794 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
35545760 ATTTTATTAT
35545770 ATATATATATG
1 ATATATATATG
35545781 ATATATATATG
1 ATATATATATG
35545792 ATA
1 ATA
35545795 CAATATGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (11 bp):
ATATATATATG
Found at i:35546031 original size:26 final size:25
Alignment explanation
Indices: 35545942--35546027 Score: 68
Period size: 25 Copynumber: 3.3 Consensus size: 25
35545932 TAAATCAATT
35545942 TAAATTAAATTATTATATAATGTG-A
1 TAAATT-AATTATTATATAATGTGAA
* * * * *
35545967 TTAA-TAGTGAGGTATATAATATGGTAA
1 TAAATTAATTA-TTATATAATGT-G-AA
35545994 TTAAATTAATTATTATATAATGTGAA
1 -TAAATTAATTATTATATAATGTGAA
35546020 TAAATTAA
1 TAAATTAA
35546028 ATTAAAATGT
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
23 3 0.07
24 10 0.22
25 12 0.27
26 2 0.04
27 2 0.04
28 12 0.27
29 4 0.09
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.42
Consensus pattern (25 bp):
TAAATTAATTATTATATAATGTGAA
Found at i:35559647 original size:43 final size:43
Alignment explanation
Indices: 35559594--35559705 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
35559584 ACAAAACACT
35559594 GCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCC
1 GCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCC
* * *
35559637 GCTAAAGAACATGACCTTTAGCGGCGCTTTACTCACAAGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCC
35559680 GCTAAAGAACATGATCTTTAGCGGCG
1 GCTAAAGAACATGATCTTTAGCGGCG
35559706 TTTTTGATAA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (43 bp):
GCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCC
Found at i:35559720 original size:43 final size:41
Alignment explanation
Indices: 35559594--35559729 Score: 148
Period size: 43 Copynumber: 3.2 Consensus size: 41
35559584 ACAAAACACT
* *
35559594 GCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAA-CGCC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTTA--TA-AAAGCGCC
* * *
35559637 GCTAAAGAACATGACCTTTAGCGGCGCTTTACTCACAAGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTTA-T-AAAAGCGCC
35559680 GCTAAAGAACATGATCTTTAGCGGCGTTTTTGATAAAAGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCG-TTTT-ATAAAAGCGCC
*
35559723 ACTAAAG
1 GCTAAAG
35559730 GTCATAAAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
42 3 0.04
43 74 0.90
44 4 0.05
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (41 bp):
GCTAAAGAACATGATCTTTAGCGGCGTTTTATAAAAGCGCC
Found at i:35562355 original size:12 final size:12
Alignment explanation
Indices: 35562338--35562365 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
35562328 AGGGAAAACT
35562338 CAAATAAATAAA
1 CAAATAAATAAA
35562350 CAAATAAATAAA
1 CAAATAAATAAA
35562362 CAAA
1 CAAA
35562366 AGAAAACCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.75, C:0.11, G:0.00, T:0.14
Consensus pattern (12 bp):
CAAATAAATAAA
Found at i:35563664 original size:22 final size:22
Alignment explanation
Indices: 35563637--35563731 Score: 113
Period size: 21 Copynumber: 4.4 Consensus size: 22
35563627 CCCTAACTCG
*
35563637 ACCCTTGAATCCCTAAATCCTA
1 ACCCTTAAATCCCTAAATCCTA
* *
35563659 ACCCTTAAATCCCTAATTCTTA
1 ACCCTTAAATCCCTAAATCCTA
* *
35563681 ACCCTTAAA-CCCTAACTTCTA
1 ACCCTTAAATCCCTAAATCCTA
* *
35563702 ACCCCTAAAT-CTTAAATCCTA
1 ACCCTTAAATCCCTAAATCCTA
35563723 ACCCTTAAA
1 ACCCTTAAA
35563732 CCATAATCCC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
21 33 0.54
22 28 0.46
ACGTcount: A:0.35, C:0.35, G:0.01, T:0.29
Consensus pattern (22 bp):
ACCCTTAAATCCCTAAATCCTA
Found at i:35563729 original size:14 final size:16
Alignment explanation
Indices: 35563712--35563751 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
35563702 ACCCCTAAAT
35563712 CTTAAATCC-TAA-CC
1 CTTAAATCCATAATCC
35563726 CTTAAA-CCATAATCC
1 CTTAAATCCATAATCC
35563741 C-TAAATCCATA
1 CTTAAATCCATA
35563752 TATAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.09
14 13 0.57
15 8 0.35
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
CTTAAATCCATAATCC
Found at i:35563743 original size:21 final size:21
Alignment explanation
Indices: 35563637--35563744 Score: 76
Period size: 21 Copynumber: 5.0 Consensus size: 21
35563627 CCCTAACTCG
* **
35563637 ACCCTTGAATCCCTAAATCCTA
1 ACCCTT-AAACCCTAATCCCTA
* *
35563659 ACCCTTAAATCCCTAATTCTTA
1 ACCCTTAAA-CCCTAATCCCTA
*
35563681 ACCCTTAAACCCTAA-CTTCTA
1 ACCCTTAAACCCTAATC-CCTA
* * *
35563702 ACCCCTAAATCTTAAAT-CCTA
1 ACCCTTAAACCCT-AATCCCTA
*
35563723 ACCCTTAAACCATAATCCCTA
1 ACCCTTAAACCCTAATCCCTA
35563744 A
1 A
35563745 ATCCATATAT
Statistics
Matches: 68, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
20 3 0.04
21 38 0.56
22 27 0.40
ACGTcount: A:0.35, C:0.35, G:0.01, T:0.29
Consensus pattern (21 bp):
ACCCTTAAACCCTAATCCCTA
Found at i:35564045 original size:8 final size:7
Alignment explanation
Indices: 35563998--35564046 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
35563988 ACTAGTTAAT
35563998 CTAAACC
1 CTAAACC
35564005 CTAAACC
1 CTAAACC
*
35564012 ATAAA-C
1 CTAAACC
*
35564018 TTAAACC
1 CTAAACC
35564025 CTAAAACC
1 CT-AAACC
35564033 CTAAACC
1 CTAAACC
35564040 CATAAAC
1 C-TAAAC
35564047 TCTTAACACA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
6 5 0.14
7 19 0.53
8 12 0.33
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:35564046 original size:15 final size:15
Alignment explanation
Indices: 35563999--35564126 Score: 63
Period size: 15 Copynumber: 8.9 Consensus size: 15
35563989 CTAGTTAATC
35563999 TAAACCCTAAA-CCA
1 TAAACCCTAAACCCA
*
35564013 TAAA-CTTAAACCC-
1 TAAACCCTAAACCCA
35564026 TAAAACCCTAAACCCA
1 T-AAACCCTAAACCCA
* * *
35564042 TAAACTCTTAACACA
1 TAAACCCTAAACCCA
* *
35564057 T-AACCTTTAAA-CCT
1 TAAACC-CTAAACCCA
* * **
35564071 TAAACCC-CAGCCTT
1 TAAACCCTAAACCCA
*
35564085 TAAACCATAAA-CCA
1 TAAACCCTAAACCCA
*
35564099 TAACCCCTAAACCCA
1 TAAACCCTAAACCCA
* *
35564114 TAATCCATAAACC
1 TAAACCCTAAACC
35564127 TTAAAATGGT
Statistics
Matches: 82, Mismatches: 23, Indels: 17
0.67 0.19 0.14
Matches are distributed among these distances:
13 7 0.09
14 32 0.39
15 42 0.51
16 1 0.01
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (15 bp):
TAAACCCTAAACCCA
Found at i:35564131 original size:22 final size:21
Alignment explanation
Indices: 35563999--35564131 Score: 67
Period size: 22 Copynumber: 6.2 Consensus size: 21
35563989 CTAGTTAATC
*
35563999 TAAACCCTAAACCATAAA-CT
1 TAAACCATAAACCATAAACCT
* * *
35564019 TAAACCCTAAAACCCTAAACCCA
1 TAAACCAT-AAACCATAAA-CCT
*
35564042 TAAACTC-TTAACACAT-AACCTT
1 TAAAC-CATAAAC-CATAAACC-T
* ** *
35564064 TAAACCTTAAACC-CCAGCCTT
1 TAAACCATAAACCATAAACC-T
* *
35564085 TAAACCATAAACCATAACCCC
1 TAAACCATAAACCATAAACCT
*
35564106 TAAACCCATAATCCATAAACCT
1 TAAA-CCATAAACCATAAACCT
35564128 TAAA
1 TAAA
35564132 ATGGTAACAC
Statistics
Matches: 87, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
20 8 0.09
21 34 0.39
22 35 0.40
23 9 0.10
24 1 0.01
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:35564493 original size:113 final size:113
Alignment explanation
Indices: 35564360--35564570 Score: 318
Period size: 113 Copynumber: 1.9 Consensus size: 113
35564350 AATCCCTAAC
* * * *
35564360 CATTAGCGGCGCTTTATTAAAAA-ATGCTGCTAAATCTCTG-AAAGCTCAGAAAACGGCGTCGTT
1 CATTAGCGGCGCTTTATTAAAAACA--CCGCTAAATCCCCGAAAAGCTCAGAAAACAGCGTCGTT
* * *
35564423 GGGCTTAGGTTTTTTTGCGGCACTTTCTCAAAAACACTGCTAAACCCCAG
64 GGGCTTAGGTTTTTTTGCAGCACATTCCCAAAAACACTGCTAAACCCCAG
*
35564473 CATTAGCGGCGCTTTCTTAAAAACACCGCTAAATCCCCGAAAAGCTCAGAAAACAGCGTCGTTGG
1 CATTAGCGGCGCTTTATTAAAAACACCGCTAAATCCCCGAAAAGCTCAGAAAACAGCGTCGTTGG
35564538 GCTTAGGTTTTTTTGCAGCACATTCCCAAAAAC
66 GCTTAGGTTTTTTTGCAGCACATTCCCAAAAAC
35564571 GCCACAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
112 11 0.12
113 76 0.86
114 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (113 bp):
CATTAGCGGCGCTTTATTAAAAACACCGCTAAATCCCCGAAAAGCTCAGAAAACAGCGTCGTTGG
GCTTAGGTTTTTTTGCAGCACATTCCCAAAAACACTGCTAAACCCCAG
Found at i:35564611 original size:73 final size:74
Alignment explanation
Indices: 35564505--35564646 Score: 232
Period size: 73 Copynumber: 1.9 Consensus size: 74
35564495 ACACCGCTAA
35564505 ATCCCCGAAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCAGCACATTCCCAAAAA
1 ATCCCCGAAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCAGCACATTCCCAAAAA
35564570 CGCCACAAT
66 CGCCACAAT
* * * * *
35564579 ATCCCC-AAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAA
1 ATCCCCGAAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCAGCACATTCCCAAAAA
35564643 CGCC
66 CGCC
35564647 GCTAAAGCCC
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
73 57 0.90
74 6 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (74 bp):
ATCCCCGAAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCAGCACATTCCCAAAAA
CGCCACAAT
Found at i:35565108 original size:73 final size:72
Alignment explanation
Indices: 35565012--35565226 Score: 295
Period size: 73 Copynumber: 2.9 Consensus size: 72
35565002 GCATTAGCAG
* *
35565012 CGCTTTCCTAAAAACGCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTT
1 CGCTTTCCTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-TT
35565077 TTTTGCGA
65 TTTTGCGA
* * * *
35565085 CGCTTTCCTAAAAATGTCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTGT
1 CGCTTTCCTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT-T
*
35565150 TTTTGCGG
65 TTTTGCGA
* * * * *
35565158 CACTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGTGTCGTTGAGCTTAGGTT
1 CGCTTT-CCTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTT
35565223 TTTT
65 TTTT
35565227 TACGGAGCTT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
72 1 0.01
73 74 0.60
74 49 0.40
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (72 bp):
CGCTTTCCTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
TTTGCGA
Found at i:35565111 original size:114 final size:114
Alignment explanation
Indices: 35564579--35565108 Score: 927
Period size: 114 Copynumber: 4.6 Consensus size: 114
35564569 ACGCCACAAT
35564579 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
1 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
35564644 GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
66 GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
35564693 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
1 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
35564758 GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
66 GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
35564807 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
1 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
35564872 GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
66 GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
*
35564921 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAAC
1 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
* * ** * *
35564986 GCCGCTAAATCCTTGAGCATTAGCAGCGCTTTCCTAAAAACGCCACTAA
66 GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
* * * *
35565035 ATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTTTTTTGCGACGCTTTC-CTAAAAA
1 ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTC-AAAAA
* *
35565099 TGTCGCTAAA
65 CGCCGCTAAA
35565109 TCCCCGAAAG
Statistics
Matches: 402, Mismatches: 13, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
113 1 0.00
114 401 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (114 bp):
ATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAAC
GCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAATGCCGCTAA
Found at i:35565196 original size:74 final size:72
Alignment explanation
Indices: 35565014--35565255 Score: 288
Period size: 73 Copynumber: 3.3 Consensus size: 72
35565004 ATTAGCAGCG
* * *
35565014 CTTTCCTAAAAACGCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTTTT
1 CTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-TTTT
* *
35565079 TTGCGACG
65 TTGCGGCA
* * * * *
35565087 CTTTCCTAAAAATGTCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTGTTT
1 CTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT-TTT
35565152 TTGCGGCA
65 TTGCGGCA
* * *
35565160 CTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGTGTCGTTGAGCTTAGGTTTT
1 CTTTCCC-AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-TTT
*
35565225 TTTACGG-A
64 TTTGCGGCA
* *
35565233 GCTTTCTCAAAAACGCTGCTAAA
1 -CTTTCCCAAAAACGCCGCTAAA
35565256 GCCCTGAGCA
Statistics
Matches: 146, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
72 1 0.01
73 84 0.58
74 60 0.41
75 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (72 bp):
CTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTT
TGCGGCA
Found at i:35565382 original size:261 final size:260
Alignment explanation
Indices: 35564900--35565506 Score: 921
Period size: 261 Copynumber: 2.3 Consensus size: 260
35564890 ATTAGTGGCG
* *
35564900 CTTTCCTAAAAATGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTT
1 CTTTCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTT
* * *
35564965 TTGCGGCGCTTTCCCAAAAACGCCGCTAAATCCTTGAGCATTAGCAGCGCTTTCCTAAAAACGCC
66 TTGCGGAGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGCGCTTTCCTAAAAACGCC
*
35565030 ACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTTTTTTGCGACGCTTTCCTA
131 ACTAAATCCCCAAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTTTTTTGCGACGCTTTCCTA
* * *
35565095 AAAATGTCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTGTTTTTGCGGCA
196 AAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTGTTTTTGCGGCA
* *
35565160 CTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGTGTCGTTGAGCTTAGGTTTT
1 CTTT-CCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTT
* * * **
35565225 TTTACGGAGCTTTCTCAAAAACGCTGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCTAAAAACGC
65 TTTGCGGAGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGCGCTTTCCTAAAAACGC
* * * *
35565290 CGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCT
130 CACTAAATCCCCAAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTTTTTTGCGACGCTTTCCT
* * *
35565355 AAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
195 AAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTGTTTTTGCGGC
*
35565420 G
260 A
* * * *
35565421 CTTTCCTAAAAACGCCG-TAAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTTT
1 CTTTCCAAAAAACGCCGCT-AAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTT
35565485 TTTGC-GACGCTTTCCCAAAAAC
65 TTTGCGGA-GCTTTCCCAAAAAC
35565507 ATCGTTAAAT
Statistics
Matches: 312, Mismatches: 32, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
259 3 0.01
260 73 0.23
261 236 0.76
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (260 bp):
CTTTCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTT
TTGCGGAGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGCGCTTTCCTAAAAACGCC
ACTAAATCCCCAAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCTTTTTTGCGACGCTTTCCTA
AAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTGTTTTTGCGGCA
Found at i:35565487 original size:407 final size:406
Alignment explanation
Indices: 35565011--35565818 Score: 1325
Period size: 407 Copynumber: 2.0 Consensus size: 406
35565001 AGCATTAGCA
35565011 GCGCTTTCCTAAAAACGCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCT
1 GCGCTTTCCTAAAAACGCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCT
* **
35565076 TTTTTGCGACGCTTTCCTAAAAATGTCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCATTGGG
66 TTTTTGCGACGCTTTCCCAAAAACATCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCATTGGG
35565141 CTTAGGTGTT-TTTGCGGCACTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGG
131 CTTAGGT-TTCTTTGCGGCACTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGG
* *
35565205 TGTCGTTGAGCTTAGGTTTTTTTACGGAGCTTTCTCAAAAACGCTGCTAAAGCCCTGAGCATTAG
195 CGTCGTTGAGCTTAGGTTTTTTTACGGAGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAG
* *
35565270 TGGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
260 CGGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCATCGTTGGGCTTA-G
* * *
35565335 TTTTTTTGCGGCGCTTTCCT-AAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTT
324 TTTTTTTGCGGCACTTT-CTAAAAAACGCCGCTAAATCCCCAAAAGCTCAAAAAACGGCATCGTT
35565399 GGGCTTAGGTTTTTTTGCG
388 GGGCTTAGGTTTTTTTGCG
*
35565418 GCGCTTTCCTAAAAACGCC-GTAAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGC
1 GCGCTTTCCTAAAAACGCCACT-AAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGC
* *
35565482 TTTTTTGCGACGCTTTCCCAAAAACATCGTTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGG
65 TTTTTTGCGACGCTTTCCCAAAAACATCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCATTGG
*
35565547 GCTTAGGTTTCTTTGCGGCACTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAATGG
130 GCTTAGGTTTCTTTGCGGCACTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGG
* * * * *
35565612 CGTTGTTGAGCTTAGGTTTTTTTGCGGTGCTTTTTCAATAACGCCGCTAAAGCCCTGAGCATTAG
195 CGTCGTTGAGCTTAGGTTTTTTTACGGAGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAG
* *
35565677 CGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGT
260 CGGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCATCGTTGGGCTTAGT
* * ** *
35565742 TTTTTTGCGGCACTTTCTAAAAAATGCCGCTAAATCTCTGAAAGCTCAAAAAATGGCATCGTTGG
325 TTTTTTGCGGCACTTTCTAAAAAACGCCGCTAAATCCCCAAAAGCTCAAAAAACGGCATCGTTGG
35565807 GCTTAGGTTTTT
390 GCTTAGGTTTTT
35565819 GAGGCGCTTC
Statistics
Matches: 372, Mismatches: 26, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
405 2 0.01
406 71 0.19
407 299 0.80
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (406 bp):
GCGCTTTCCTAAAAACGCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGCT
TTTTTGCGACGCTTTCCCAAAAACATCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCATTGGG
CTTAGGTTTCTTTGCGGCACTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGC
GTCGTTGAGCTTAGGTTTTTTTACGGAGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGC
GGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCATCGTTGGGCTTAGTT
TTTTTGCGGCACTTTCTAAAAAACGCCGCTAAATCCCCAAAAGCTCAAAAAACGGCATCGTTGGG
CTTAGGTTTTTTTGCG
Found at i:35565625 original size:74 final size:73
Alignment explanation
Indices: 35565271--35565662 Score: 572
Period size: 73 Copynumber: 5.4 Consensus size: 73
35565261 GAGCATTAGT
35565271 GGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
1 GGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
35565336 TTTTTTGC
66 TTTTTTGC
35565344 GGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
1 GGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
35565409 TTTTTTGC
66 TTTTTTGC
* *
35565417 GGCGCTTTCCTAAAAACGCCG-TAAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
1 GGCGCTTTCCTAAAAACGCCGCT-AAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
*
35565481 CTTTTTTGC
65 TTTTTTTGC
* * ** * * *
35565490 GACGCTTTCCCAAAAACATCGTTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGT
1 GGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
*
35565555 TTCTTTGC
66 TTTTTTGC
* * * * *
35565563 GGCACTTTCCCAAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAATGGCGTTGTTGAGCTTAGG
1 GGCGCTTT-CCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
35565628 TTTTTTTGC
65 TTTTTTTGC
* * *
35565637 GGTGCTTT-TTCAATAACGCCGCTAAA
1 GGCGCTTTCCT-AAAAACGCCGCTAAA
35565663 GCCCTGAGCA
Statistics
Matches: 287, Mismatches: 28, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
72 1 0.00
73 224 0.78
74 62 0.22
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (73 bp):
GGCGCTTTCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
TTTTTTGC
Found at i:35565800 original size:72 final size:72
Alignment explanation
Indices: 35565676--35565818 Score: 214
Period size: 72 Copynumber: 2.0 Consensus size: 72
35565666 CTGAGCATTA
* * *
35565676 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCACTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCATCGTTGGGCTTAG
*
35565741 TTTTTTT
66 GTTTTTT
* * * *
35565748 GCGGCACTTTCTAAAAAATGCCGCTAAATCTCTGAAAGCTCAAAAAATGGCATCGTTGGGCTTAG
1 GCGGCACTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCATCGTTGGGCTTAG
35565813 GTTTTT
66 GTTTTT
35565819 GAGGCGCTTC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
GCGGCACTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCATCGTTGGGCTTAG
GTTTTTT
Found at i:35566245 original size:44 final size:43
Alignment explanation
Indices: 35566195--35566353 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 43
35566185 TATGTGATCT
* *
35566195 CGTGTAAGACCACGCCTGGGACGTTGGCATCGATTTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATTT-AGATTTA
*
35566239 CGTGTAAGACCATC-TCTGGGACATTGGCATCG-TATATGATTT-
1 CGTGTAAGACCA-CGTCTGGGACATTGGCATCGATTTA-GATTTA
* * * *
35566281 CGTATAAGACC-CTGTCTGGGATAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TTAGATTTA
* *
35566324 CATGTAAGGCCACGTCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
35566354 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
40 1 0.01
42 29 0.31
43 33 0.35
44 30 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTAGATTTA
Found at i:35575497 original size:13 final size:13
Alignment explanation
Indices: 35575479--35575504 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35575469 ACTTTATGCA
35575479 AACAAATGGTTTT
1 AACAAATGGTTTT
35575492 AACAAATGGTTTT
1 AACAAATGGTTTT
35575505 CGAATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:35579495 original size:42 final size:42
Alignment explanation
Indices: 35579428--35579548 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
35579418 GATTTGAGAT
* *
35579428 TTACGTGTAAGA-CCAAGTCTGGGACATTGGCATCGTATATAA
1 TTACGTGTAAGACCCTA-TCTGGGACAATGGCATCGTATATAA
* * * *
35579470 TTACGTGTAAGACCCTATCTAGGACAGTGGCATTGTTATTTAA
1 TTACGTGTAAGACCCTATCTGGGACAATGGCATCG-TATATAA
* * *
35579513 TTACGTATAAGACCCTGTCTGGGATAATGGCATCGT
1 TTACGTGTAAGACCCTATCTGGGACAATGGCATCGT
35579549 TATTTGATTA
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 28 0.42
43 38 0.58
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCCTATCTGGGACAATGGCATCGTATATAA
Found at i:35590037 original size:21 final size:21
Alignment explanation
Indices: 35590011--35590061 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
35590001 ACCCGGCCAC
35590011 CAATACATCCGTTTCAAATCA
1 CAATACATCCGTTTCAAATCA
35590032 CAATACATCCGTTTCAAATCA
1 CAATACATCCGTTTCAAATCA
35590053 CAATACATC
1 CAATACATC
35590062 TTTGTGCTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.27
Consensus pattern (21 bp):
CAATACATCCGTTTCAAATCA
Found at i:35594733 original size:388 final size:388
Alignment explanation
Indices: 35594002--35594781 Score: 1273
Period size: 388 Copynumber: 2.0 Consensus size: 388
35593992 GTGCTAGGCT
* * * *
35594002 GTGTGTAAAAAACCTTGGCATTCTATTTGAAATTTTAAGGTGCAGGGGACACACGGTCAGATCAC
1 GTGTGTAAAAAACCTTGGCATTCTATTTGAAATTTTAAGATGCAGGGAACACACGGCCAGACCAC
* * * *
35594067 ACGCCCATACGTTAGGCCGTGTATTACACATGGCTGAGACACACGCCTGTGTCTCTGCTTGTGTG
66 ACGCCCATACGTCAGGCCGTGTATCACACATGGCTGAGACACACGCCTGTGTCTCTGCTTATGTA
35594132 GACGAAAATAAGTCATTTTAAAGCCACTTTTCTCACCCATTTTGACATTAATCTGCACTCAACAT
131 GACGAAAATAAGTCATTTTAAAGCCACTTTTCTCACCCATTTTGACATTAATCTGCACTCAACAT
*
35594197 TCACATACAATATATCCCAACCAAGCAATCAATAAAGCTAAAACGTGTTCTCAACATGACATAAC
196 TCACATACAATATATCCCAACCAAGCAATCAATAAAGCTAAAACATGTTCTCAACATGACATAAC
35594262 ATCACAAATATTTCAATTACTTATACTTACCTATTTAACTCATTTCATTGATTTATCAAATTCTA
261 ATCACAAATATTTCAATTACTTATACTTACCTATTTAACTCATTTCATTGATTTATCAAATTCTA
*
35594327 CTACTAATTACATACAT-A-CAAACATTTAAGTTTCACAACCACAATTCAAACTATTTCATTGCC
326 CTACTAATT--ATACATAAGCAAACATTTAAGATTCACAACCACAATTCAAACTATTTCATTGCC
*
35594390 GTGTGTAAAAAACCTTGGCATTCTATTTGAAATTTTAAGATGCAGGGAACACACGGCCATACCAC
1 GTGTGTAAAAAACCTTGGCATTCTATTTGAAATTTTAAGATGCAGGGAACACACGGCCAGACCAC
** * *
35594455 ACGCCCATGTGTCAGGCCGTGTGTCACACATGGCTGAGACACACGCCTGTGGT-TTTGCTTATGT
66 ACGCCCATACGTCAGGCCGTGTATCACACATGGCTGAGACACACGCCTGT-GTCTCTGCTTATGT
*
35594519 AGACGAAAATATGTCATTTTAAAGCCACTTTTCTCACCCATTTTGACATTAATCTGCACTCAACA
130 AGACGAAAATAAGTCATTTTAAAGCCACTTTTCTCACCCATTTTGACATTAATCTGCACTCAACA
*
35594584 TTCACATACACCAATATATCCCAACCAAGCAATCGATACAAGCTAAAACATGTTCTCAACATGAC
195 TTCACAT--A-CAATATATCCCAACCAAGCAATCAATA-AAGCTAAAACATGTTCTCAACATGAC
*
35594649 ATAACATCACAAGTATTTCAATTACTTATACTTACCTATTTAACTCATTTCATTGATTTATCAAA
256 ATAACATCACAAATATTTCAATTACTTATACTTACCTATTTAACTCATTTCATTGATTTATCAAA
*
35594714 TTCTACTACTAA-T-TACATACATGCAAACATTTAAGATTGACAACCACAATTCAAACTATTTCA
321 TTCTACTACTAATTATACATA-A-GCAAACATTTAAGATTCACAACCACAATTCAAACTATTTCA
35594777 TTGCC
384 TTGCC
35594782 AAACCAACCC
Statistics
Matches: 364, Mismatches: 19, Indels: 14
0.92 0.05 0.04
Matches are distributed among these distances:
388 189 0.52
389 2 0.01
390 2 0.01
391 27 0.07
392 144 0.40
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (388 bp):
GTGTGTAAAAAACCTTGGCATTCTATTTGAAATTTTAAGATGCAGGGAACACACGGCCAGACCAC
ACGCCCATACGTCAGGCCGTGTATCACACATGGCTGAGACACACGCCTGTGTCTCTGCTTATGTA
GACGAAAATAAGTCATTTTAAAGCCACTTTTCTCACCCATTTTGACATTAATCTGCACTCAACAT
TCACATACAATATATCCCAACCAAGCAATCAATAAAGCTAAAACATGTTCTCAACATGACATAAC
ATCACAAATATTTCAATTACTTATACTTACCTATTTAACTCATTTCATTGATTTATCAAATTCTA
CTACTAATTATACATAAGCAAACATTTAAGATTCACAACCACAATTCAAACTATTTCATTGCC
Found at i:35595373 original size:33 final size:33
Alignment explanation
Indices: 35595291--35595373 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
35595281 TGGTCCAACC
* * * *
35595291 ATGGTCTTACGTTCAAAGTGCCATAACCCAGTT
1 ATGGTCTTACATTTAAAATGCCATAACCCAGCT
* * *
35595324 ATGGTCTTTTCA-TTAAAATGCCATAGCCTAGCT
1 ATGGTC-TTACATTTAAAATGCCATAACCCAGCT
35595357 ATGGTCTTACATTTAAA
1 ATGGTCTTACATTTAAA
35595374 CATTTCCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
32 4 0.10
33 33 0.82
34 3 0.08
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (33 bp):
ATGGTCTTACATTTAAAATGCCATAACCCAGCT
Found at i:35605940 original size:22 final size:22
Alignment explanation
Indices: 35605877--35605926 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
35605867 CTAAAATTTG
* *
35605877 AAATTTGAAAAGTGTAAAGACT
1 AAATTTTAAAAGTATAAAGACT
35605899 AAATTTTAAAAGTATAAAGACT
1 AAATTTTAAAAGTATAAAGACT
35605921 AAATTT
1 AAATTT
35605927 CAAATATAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.32
Consensus pattern (22 bp):
AAATTTTAAAAGTATAAAGACT
Found at i:35610793 original size:32 final size:31
Alignment explanation
Indices: 35610747--35610858 Score: 102
Period size: 32 Copynumber: 3.5 Consensus size: 31
35610737 TTTATTTTTG
*
35610747 GGTCCAATTAAGTACTTGAACTCGACTTTCTT
1 GGTCAAATTAAGTACTTGAACTCG-CTTTCTT
* * *
35610779 GGTCTAATTAAGTACTTGAACTTGGTTTCTT
1 GGTCAAATTAAGTACTTGAACTCGCTTTCTT
* * * *
35610810 GGTTCAAATTTAGTGCTTGAACTTAG-TTTTTT
1 GG-TCAAATTAAGTACTTGAAC-TCGCTTTCTT
35610842 GGTCCAAATT-AGTACTT
1 GGT-CAAATTAAGTACTT
35610859 AGTTATTTGA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
31 15 0.22
32 51 0.75
33 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (31 bp):
GGTCAAATTAAGTACTTGAACTCGCTTTCTT
Found at i:35612932 original size:19 final size:19
Alignment explanation
Indices: 35612895--35612932 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
35612885 GGAAAATCAC
*
35612895 GTATTTAAATTATAAATAT
1 GTATTTAAATAATAAATAT
35612914 GTATTTAAA-AATAACATAT
1 GTATTTAAATAATAA-ATAT
35612933 AATAATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
GTATTTAAATAATAAATAT
Found at i:35614065 original size:28 final size:30
Alignment explanation
Indices: 35614023--35614078 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
35614013 AAATTTTAAA
*
35614023 TTATTTTCACTATTT-TAAAAATAAAATAT
1 TTATTTTCACTATTTAAAAAAATAAAATAT
*
35614052 TTATTTTC-GTATTTAAAAAAATAAAAT
1 TTATTTTCACTATTTAAAAAAATAAAAT
35614079 TAATTATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (30 bp):
TTATTTTCACTATTTAAAAAAATAAAATAT
Found at i:35614105 original size:22 final size:21
Alignment explanation
Indices: 35614070--35614111 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
35614060 GTATTTAAAA
*
35614070 AAATAAAATTAATTATAAGTT
1 AAATAAAATAAATTATAAGTT
*
35614091 AAATAAAAATAAATTTTAAGT
1 AAAT-AAAATAAATTATAAGT
35614112 ATGTTCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (21 bp):
AAATAAAATAAATTATAAGTT
Found at i:35614610 original size:58 final size:59
Alignment explanation
Indices: 35614541--35614654 Score: 169
Period size: 58 Copynumber: 1.9 Consensus size: 59
35614531 TCTTGAAAGA
* * * *
35614541 ATGTGATACTTGCC-CTCATAAAAGTTTTAACA-AAAATGATCCTGAAATTGAAGACTAG
1 ATGTGAAACTTGCCACT-ATAAAAGCTTTAACAGAAAACGATCCTAAAATTGAAGACTAG
35614599 ATGTGAAACTTGCCACTATAAAAGCTTTAACAGAAAACGATCCTAAAATTGAAGAC
1 ATGTGAAACTTGCCACTATAAAAGCTTTAACAGAAAACGATCCTAAAATTGAAGAC
35614655 AACTATCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 27 0.54
59 23 0.46
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (59 bp):
ATGTGAAACTTGCCACTATAAAAGCTTTAACAGAAAACGATCCTAAAATTGAAGACTAG
Found at i:35615718 original size:6 final size:6
Alignment explanation
Indices: 35615707--35615753 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
35615697 AACCATTGAA
35615707 CATAAG CATAAG CATAAG CATAAG CATAAG CATAAG CATAAG CATAA
1 CATAAG CATAAG CATAAG CATAAG CATAAG CATAAG CATAAG CATAA
35615754 ACAAGAAGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (6 bp):
CATAAG
Found at i:35619070 original size:13 final size:13
Alignment explanation
Indices: 35619052--35619080 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
35619042 ACTATTAGTA
35619052 TTTTTTAAAATAT
1 TTTTTTAAAATAT
35619065 TTTTTTAAAATAT
1 TTTTTTAAAATAT
35619078 TTT
1 TTT
35619081 ACCATACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTTTTAAAATAT
Found at i:35621664 original size:41 final size:41
Alignment explanation
Indices: 35621612--35621717 Score: 169
Period size: 41 Copynumber: 2.6 Consensus size: 41
35621602 TATTTGCATT
*
35621612 CTGTATCTGATATGGGCCAAGGCCCTAATGTATTTCTGAGA
1 CTGTATCTGATATGGGCCAAGACCCTAATGTATTTCTGAGA
* *
35621653 CTGTATTTGATATGGGCCAAGACCCTAATGTATTTTTGAGA
1 CTGTATCTGATATGGGCCAAGACCCTAATGTATTTCTGAGA
*
35621694 CTGTATCTGA-ATGGGCTAAGACCC
1 CTGTATCTGATATGGGCCAAGACCC
35621718 AAACTAATTC
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
40 13 0.22
41 47 0.78
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (41 bp):
CTGTATCTGATATGGGCCAAGACCCTAATGTATTTCTGAGA
Found at i:35624812 original size:34 final size:35
Alignment explanation
Indices: 35624757--35624823 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
35624747 CAAACACCAG
*
35624757 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
35624792 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
35624824 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:35644517 original size:56 final size:56
Alignment explanation
Indices: 35644412--35644524 Score: 158
Period size: 56 Copynumber: 2.0 Consensus size: 56
35644402 TTCCAAGGAA
**
35644412 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
* *
35644468 AATCAACTCATATTGCGAGA-AGTGAGTTGAGCCT-AGGGGCACGCCGAGGTATTTTT
1 AATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCA-AGACACGCCGAGGTATTTTT
35644524 A
1 A
35644525 GTTTATGTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 2 0.04
56 49 0.96
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (56 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
Found at i:35644639 original size:122 final size:123
Alignment explanation
Indices: 35644468--35644695 Score: 316
Period size: 122 Copynumber: 1.8 Consensus size: 123
35644458 AGGTATTTTT
* * * *
35644468 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGGGCACGCCGAGGTATTTTTAGTTTATGT
1 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGGACACGCCGAGGTAATTTCAATTTATGT
**
35644533 TTT-AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
66 TTTCAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
* * * *
35644590 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCA-GGACACGCTGAGGTAATTTCAATTTTTG
1 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGGGACACGCCGAGGTAATTTCAATTTATG
*
35644654 TTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65 TTTT-C-AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
35644696 CAAGACACAT
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
122 58 0.64
123 1 0.01
125 32 0.35
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (123 bp):
AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGGACACGCCGAGGTAATTTCAATTTATGT
TTTCAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
Found at i:35644769 original size:75 final size:73
Alignment explanation
Indices: 35644588--35645194 Score: 585
Period size: 75 Copynumber: 8.0 Consensus size: 73
35644578 TTTGTTTTTC
* * *
35644588 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
35644653 GTTTTC-C
66 GTTTTCAA
* **
35644660 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
35644725 GCTTTTCAA
66 G-TTTTCAA
* **
35644734 GAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
35644799 TGCTTTTCAA
65 TG-TTTTCAA
* *
35644809 GAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCC
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-----T--A-T--
35644874 TGTTCAATTTCTGTTTTTC-A
55 T-TTCAATTTCTG-TTTTCAA
* * * *
35644894 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
**
35644959 ACTTTCAA
66 GTTTTCAA
* * * * *
35644967 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TGGCTCACG-TGTTGAGTCACTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTG-AG-GT-ATTTTCAAT
**
35645030 TTCTGTTTTTATGTCTGTTTTC
62 TTCTG---TT-T-TC-----AA
* * * * *
35645052 TAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
35645117 GTTTGGC-A
66 GTTT-TCAA
* * * *
35645125 AAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCCATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
35645190 GTTTT
66 GTTTT
35645195 TCAATTTATG
Statistics
Matches: 456, Mismatches: 48, Indels: 62
0.81 0.08 0.11
Matches are distributed among these distances:
72 67 0.15
73 115 0.25
74 3 0.01
75 136 0.30
76 1 0.00
77 1 0.00
78 1 0.00
79 5 0.01
80 5 0.01
82 1 0.00
83 13 0.03
84 48 0.11
85 40 0.09
86 20 0.04
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTCAA
Found at i:35644945 original size:84 final size:86
Alignment explanation
Indices: 35644790--35644953 Score: 260
Period size: 84 Copynumber: 1.9 Consensus size: 86
35644780 TTGAGGTATT
35644790 TTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
**
35644855 TTGAGGTATTTTCAATTCCTG
66 CCGAGGTATTTTCAATTCCTG
* ** *
35644876 TTCAATTTCTGTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
35644939 CCGAGGTATTTTCAA
66 CCGAGGTATTTTCAA
35644954 ATTCTACTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
84 55 0.76
85 1 0.01
86 16 0.22
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (86 bp):
TTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CCGAGGTATTTTCAATTCCTG
Found at i:35645027 original size:159 final size:156
Alignment explanation
Indices: 35644714--35645272 Score: 603
Period size: 159 Copynumber: 3.5 Consensus size: 156
35644704 ATTGAGGTAT
* *
35644714 TTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTCAATTTCTG-TTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*** *
35644779 ATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63 GCCGAGGTATTTTCAAATTCT-C-TTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
35644844 CTCAAGACAC-GTTGAGGTATTTTCAATTCCTG
125 CTC-AGGCACTGTTGAGGTATTTTCAATTTCTG
*
35644876 -TTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
* *
35644940 CGAGGTATTTTCAAATTCTACTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-T
65 CGAGGTATTTTCAAATTCT-CTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
35645004 GGCTCACGTGTTGA-GTCACTTTCAATTTCTG
129 GG--CAC-TGTTGAGGT-ATTTTCAATTTCTG
** * * * * *
35645035 TTTTTATGTCTGTTTTC-TAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCC
* * *
35645099 GAGGTATTTTC-AATTACTGTTTGGC-AAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTC
66 GAGGTATTTTCAAATT-CTCTTT--CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
35645162 AGG-ACATGCTGAGGTATTTTCCATTTCTG
128 AGGCAC-TGTTGAGGTATTTTCAATTTCTG
* * * * * *
35645191 TTTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATGGAGCCTCAGGTCATA
1 --TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC--A
35645256 CGCCGAGGTATTTTCAA
62 CGCCGAGGTATTTTCAA
35645273 TAGATGTTTT
Statistics
Matches: 339, Mismatches: 41, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
155 1 0.00
156 19 0.06
157 47 0.14
158 112 0.33
159 119 0.35
160 9 0.03
161 31 0.09
162 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (156 bp):
TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCC
GAGGTATTTTCAAATTCTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
CACTGTTGAGGTATTTTCAATTTCTG
Found at i:35645176 original size:73 final size:73
Alignment explanation
Indices: 35645057--35645193 Score: 211
Period size: 73 Copynumber: 1.9 Consensus size: 73
35645047 TTTTCTAAAT
* * *
35645057 CAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTGTTTG
1 CAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTACTGTTTG
35645122 GCAAAAAC
66 GCAAAAAC
* * * *
35645130 CAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCCATTTCTGTTT
1 CAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTACTGTTT
35645194 TTCAATTTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 57 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (73 bp):
CAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTACTGTTTG
GCAAAAAC
Found at i:35645468 original size:15 final size:16
Alignment explanation
Indices: 35645437--35645470 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
35645427 CGCTGAGGTA
*
35645437 TTTTCAATTTTTCGCT
1 TTTTCAATTTATCGCT
35645453 TTTTCAATTTAT-GCT
1 TTTTCAATTTATCGCT
35645468 TTT
1 TTT
35645471 CAAATTCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTTCAATTTATCGCT
Found at i:35645613 original size:74 final size:73
Alignment explanation
Indices: 35645487--35645744 Score: 304
Period size: 75 Copynumber: 3.5 Consensus size: 73
35645477 CTACTTTTCC
* * * *
35645487 AAAATCAGCTCATATTGCAAGAAAG-GAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
35645551 TGTTGTCAAA
65 TGTT-TCAAA
* * * ** *
35645561 AAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACATTAAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
35645626 GCTTTTCAAG
66 G--TTTCAAA
* * * *
35645636 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
35645701 ACTTTC-AA
66 -GTTTCAAA
*
35645709 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
35645745 TCTGCTTTTC
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
73 38 0.24
74 57 0.37
75 59 0.38
76 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTCAAA
Found at i:35645672 original size:75 final size:74
Alignment explanation
Indices: 35645467--35645744 Score: 321
Period size: 74 Copynumber: 3.8 Consensus size: 74
35645457 CAATTTATGC
* * * * * *
35645467 TTTTCAAATTCTACTTTTC-CAAAATCAGCTCATATTGCAAGAAAG-GAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCAGGACA
35645530 CGCTGAGGTA
65 CGCTGAGGTA
* * * * *
35645540 ATTTCAATTTCTG-TTGTCAAAAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGCTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
** *
35645604 CATTAAGGTA
65 CGCTGAGGTA
* *
35645614 TTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCA
1 TTTTCAATTTCTGCTTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
35645679 CGCCGAGGTA
65 CGCTGAGGTA
* * *
35645689 TTTTCAAATTCTAC-TTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
35645745 TCTGCTTTTC
Statistics
Matches: 172, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
72 4 0.02
73 47 0.27
74 61 0.35
75 60 0.35
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (74 bp):
TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTA
Found at i:35647770 original size:28 final size:28
Alignment explanation
Indices: 35647721--35647777 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
35647711 CGTACATGTA
* *
35647721 TATACAGTATTATCTTTTATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
* *
35647749 TATATAGTATGATTTTTAATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
35647777 T
1 T
35647778 TTTTTTTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (28 bp):
TATACAGTATGATCTTTAATTACTTTAT
Found at i:35653047 original size:21 final size:21
Alignment explanation
Indices: 35653030--35653103 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 21
35653020 CCGTAAGTGT
*
35653030 TGAACGGAAGCTCATAAGAGC
1 TGAACGGAAACTCATAAGAGC
* * *
35653051 TGAATGGAAACTCATAAGGGT
1 TGAACGGAAACTCATAAGAGC
* * *
35653072 TAAAC-AAAAGCTCAAAAGAGC
1 TGAACGGAAA-CTCATAAGAGC
*
35653093 TGAATGGAAAC
1 TGAACGGAAAC
35653104 CCATTAGGGT
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
20 3 0.08
21 32 0.84
22 3 0.08
ACGTcount: A:0.45, C:0.15, G:0.24, T:0.16
Consensus pattern (21 bp):
TGAACGGAAACTCATAAGAGC
Found at i:35653083 original size:42 final size:42
Alignment explanation
Indices: 35653037--35653117 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
35653027 TGTTGAACGG
* *
35653037 AAGCTCATAAGAGCTGAATGGAAACTCATAAGGGTTAAACAA
1 AAGCTCAAAAGAGCTGAATGGAAACCCATAAGGGTTAAACAA
*
35653079 AAGCTCAAAAGAGCTGAATGGAAACCCATTAGGGTTAAA
1 AAGCTCAAAAGAGCTGAATGGAAACCCATAAGGGTTAAA
35653118 TGGAAACTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (42 bp):
AAGCTCAAAAGAGCTGAATGGAAACCCATAAGGGTTAAACAA
Found at i:35653136 original size:21 final size:21
Alignment explanation
Indices: 35653095--35653138 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
35653085 AAAAGAGCTG
*
35653095 AATGGAAACCCATTAGGGTTA
1 AATGGAAACCCATTAGAGTTA
*
35653116 AATGGAAACTCA-TATGAGTTA
1 AATGGAAACCCATTA-GAGTTA
35653137 AA
1 AA
35653139 CAAAAGCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.25
Consensus pattern (21 bp):
AATGGAAACCCATTAGAGTTA
Found at i:35655160 original size:10 final size:10
Alignment explanation
Indices: 35655147--35655182 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
35655137 TAAAAAGATA
*
35655147 TATATGTATG
1 TATATATATG
35655157 TATATATATG
1 TATATATATG
35655167 TATATATATG
1 TATATATATG
35655177 TATATA
1 TATATA
35655183 AAAATTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (10 bp):
TATATATATG
Found at i:35655161 original size:14 final size:14
Alignment explanation
Indices: 35655144--35655175 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
35655134 ATATAAAAAG
*
35655144 ATATATATGTATGT
1 ATATATATGTATAT
35655158 ATATATATGTATAT
1 ATATATATGTATAT
35655172 ATAT
1 ATAT
35655176 GTATATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (14 bp):
ATATATATGTATAT
Found at i:35655243 original size:61 final size:61
Alignment explanation
Indices: 35655107--35655243 Score: 154
Period size: 61 Copynumber: 2.2 Consensus size: 61
35655097 ACGTAAATAA
*
35655107 ATAAATAAAATAAATAAAATTATAGAAATATAAAAAGATATATATGTATGTATATATATGTAT
1 ATAAAT-AAATATA-AAAATTATAGAAATATAAAAAGATATATATGTATGTATATATATGTAT
* ** * *
35655170 ATATATGTATATAAAAATTATA-AAATATAAAAA-ATATATATAAGTCTGTATATATATTTAT
1 ATAAATAAATATAAAAATTATAGAAATATAAAAAGATATATAT--GTATGTATATATATGTAT
35655231 GA-AAATAAATATA
1 -ATAAATAAATATA
35655244 TATAGATATG
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
59 8 0.13
60 11 0.18
61 33 0.53
62 5 0.08
63 5 0.08
ACGTcount: A:0.56, C:0.01, G:0.07, T:0.36
Consensus pattern (61 bp):
ATAAATAAATATAAAAATTATAGAAATATAAAAAGATATATATGTATGTATATATATGTAT
Found at i:35655253 original size:22 final size:22
Alignment explanation
Indices: 35655218--35655288 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
35655208 TATAAGTCTG
**
35655218 TATATATATTTATGAAAATAAA
1 TATATATAAATATGAAAATAAA
* * *
35655240 TATATATAGATATGTATATAAA
1 TATATATAAATATGAAAATAAA
* *
35655262 T-TATA-AAATATAACAAATATA
1 TATATATAAATATGA-AAATAAA
35655283 TATATA
1 TATATA
35655289 AGAATGTATA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
20 5 0.13
21 10 0.26
22 23 0.61
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (22 bp):
TATATATAAATATGAAAATAAA
Found at i:35655270 original size:34 final size:34
Alignment explanation
Indices: 35655188--35655271 Score: 93
Period size: 36 Copynumber: 2.5 Consensus size: 34
35655178 ATATAAAAAT
* *
35655188 TATAAAATAT-AAA-AAATATATATAAGTCTGTA
1 TATAAATTATAAAATAAATATATATAAGTATGTA
*
35655220 TATATATTTATGAAAATAAATATATAT-AGATATGTA
1 TATA-AATTAT-AAAATAAATATATATAAG-TATGTA
35655256 TATAAATTATAAAATA
1 TATAAATTATAAAATA
35655272 TAACAAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
32 4 0.09
33 4 0.09
34 6 0.14
35 10 0.23
36 19 0.44
ACGTcount: A:0.55, C:0.01, G:0.06, T:0.38
Consensus pattern (34 bp):
TATAAATTATAAAATAAATATATATAAGTATGTA
Found at i:35655340 original size:27 final size:27
Alignment explanation
Indices: 35655278--35655365 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
35655268 AATATAACAA
* * *
35655278 ATATATA-TATAAGAATGTATATATAT
1 ATATATATTATAAAAATGTATGTATGT
* *
35655304 AAATAAATTAT-AAAA-GTATGTACGTGT
1 ATATATATTATAAAAATGTATGTA--TGT
35655331 ATATATATTATAAAAATGTATGTATGT
1 ATATATATTATAAAAATGTATGTATGT
35655358 ATATATAT
1 ATATATAT
35655366 AACGAAATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
25 6 0.12
26 8 0.16
27 25 0.50
28 4 0.08
29 7 0.14
ACGTcount: A:0.48, C:0.01, G:0.10, T:0.41
Consensus pattern (27 bp):
ATATATATTATAAAAATGTATGTATGT
Found at i:35655362 original size:29 final size:29
Alignment explanation
Indices: 35655278--35655366 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
35655268 AATATAACAA
* *
35655278 ATATATA-TATAAGAATGTA--TATATAT
1 ATATATATTATAAAAATGTATGTATGTAT
* * * *
35655304 AAATAAATTAT-AAAA-GTATGTACGTGT
1 ATATATATTATAAAAATGTATGTATGTAT
35655331 ATATATATTATAAAAATGTATGTATGTAT
1 ATATATATTATAAAAATGTATGTATGTAT
35655360 ATATATA
1 ATATATA
35655367 ACGAAATTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
25 3 0.06
26 8 0.17
27 16 0.33
28 4 0.08
29 17 0.35
ACGTcount: A:0.48, C:0.01, G:0.10, T:0.40
Consensus pattern (29 bp):
ATATATATTATAAAAATGTATGTATGTAT
Found at i:35657215 original size:51 final size:51
Alignment explanation
Indices: 35657080--35657374 Score: 233
Period size: 51 Copynumber: 5.8 Consensus size: 51
35657070 ACTTTTATCA
* * *
35657080 TTCGATACACGTAGTAGCCTTTACATAGTACTACACACGTGA-TCAAG-TT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGCTT
* *
35657129 TTACGGTTCACGTAGTAGCTTTCACATAGTACTACACACGTGACTAAAGCTT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGCTT
* * * * * * *
35657181 TTCGGTACACATAGTAACCTTCACTTAGTACTACATATGTGAC--CATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGC-TT
* * * *
35657231 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGCTT
* * * * * * * ** * *
35657283 CTCAGTACACATTGCAGCCTTCACTTAGTACTACATATATGAC--CATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGC-TT
* * *
35657333 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTG
35657375 TTCATCGATA
Statistics
Matches: 187, Mismatches: 50, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
49 6 0.03
50 41 0.22
51 132 0.71
52 6 0.03
53 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (51 bp):
TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGCTT
Found at i:35657267 original size:102 final size:102
Alignment explanation
Indices: 35657135--35657374 Score: 399
Period size: 102 Copynumber: 2.4 Consensus size: 102
35657125 AGTTTTACGG
* * * * * *
35657135 TTCACGTAGTAGCTTTCACATAGTACTACACACGTGACTAAAGCTTTTCGGTACACATAGTAACC
1 TTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCAGTACACATAGCAACC
*
35657200 TTCACTTAGTACTACATATGTGACCATCATTTATCGA
66 TTCACTTAGTACTACATATATGACCATCATTTATCGA
* *
35657237 TTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCAGTACACATTGCAGCC
1 TTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCAGTACACATAGCAACC
35657302 TTCACTTAGTACTACATATATGACCATCATTTATCGA
66 TTCACTTAGTACTACATATATGACCATCATTTATCGA
35657339 TTCACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TTCACGTAGTAGCCTTCACACAGTACTACACACGTG
35657375 TTCATCGATA
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 129 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (102 bp):
TTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCAGTACACATAGCAACC
TTCACTTAGTACTACATATATGACCATCATTTATCGA
Found at i:35658605 original size:11 final size:13
Alignment explanation
Indices: 35658577--35658608 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
35658567 CCCAAACATT
35658577 GAAATTTTCGAGC
1 GAAATTTTCGAGC
35658590 GAAATTTTC-A-C
1 GAAATTTTCGAGC
35658601 GAAATTTT
1 GAAATTTT
35658609 TTTGTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 9 0.47
12 1 0.05
13 9 0.47
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (13 bp):
GAAATTTTCGAGC
Found at i:35660267 original size:43 final size:44
Alignment explanation
Indices: 35660166--35660285 Score: 172
Period size: 43 Copynumber: 2.8 Consensus size: 44
35660156 TCATCGTTTT
*
35660166 AATCTGCTCCACTGCAAC-TCTAGGGAGATAGGATTAATAGCTTC
1 AATCTGCTCCACTGCAACTTC-AGGGAGATAAGATTAATAGCTTC
** *
35660210 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-TCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTC
*
35660253 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
35660286 CTGGTGTTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 36 0.51
44 32 0.46
45 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTC
Found at i:35660389 original size:88 final size:88
Alignment explanation
Indices: 35660272--35660555 Score: 433
Period size: 88 Copynumber: 3.2 Consensus size: 88
35660262 CACTGCAACT
* * * * *
35660272 TCAGGGAGATAAGACTGGTGTTTTTGATCTACTTCACTGCTAGTACAGGAAGACAAGATCTACAA
1 TCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAGATCTACAC
*
35660337 TCTTCAACCTACTCCACTGTTGC
66 TCTTCAACCTACTCCACTGCTGC
*
35660360 TCAGGGAGATAAGGCTTGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAGATCTACAC
1 TCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAGATCTACAC
35660425 TCTTCAACCTACTCCACTGCTGC
66 TCTTCAACCTACTCCACTGCTGC
* * *
35660448 TCAGGGAGATAAGGCTGGTGCTTTCGATCTACTTCACTGCCAGTACAAGAAGACAAGATCTACAC
1 TCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAGATCTACAC
** *
35660513 TCTTCAACCTACTCCTTTACTGC
66 TCTTCAACCTACTCCACTGCTGC
* *
35660536 TCAAGGAGATAAGGTTGGTG
1 TCAGGGAGATAAGGCTGGTG
35660556 GCTTAAATCT
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 180 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (88 bp):
TCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAGATCTACAC
TCTTCAACCTACTCCACTGCTGC
Found at i:35660486 original size:43 final size:42
Alignment explanation
Indices: 35660345--35660487 Score: 108
Period size: 43 Copynumber: 3.3 Consensus size: 42
35660335 AATCTTCAAC
* *
35660345 CTACTCCACTGTTGCTCAGGGAGATAAGGCTTGTGCTTTAGAT
1 CTACTCCACTGCTGCTCAGGGAGATAAGGC-TGTGCTTTCGAT
* * * * * *** * *
35660388 CTACTTCACTGCAAG-TACAGGAAGACAAGATCTACACTCTTCAAC
1 CTACTCCACTGC-TGCT-CAGGGAGATAAG-GCTGTGCT-TTCGAT
35660433 CTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGCTTTCGAT
1 CTACTCCACTGCTGCTCAGGGAGATAAGGCT-GTGCTTTCGAT
*
35660476 CTACTTCACTGC
1 CTACTCCACTGC
35660488 CAGTACAAGA
Statistics
Matches: 71, Mismatches: 23, Indels: 12
0.67 0.22 0.11
Matches are distributed among these distances:
43 28 0.39
44 27 0.38
45 16 0.23
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (42 bp):
CTACTCCACTGCTGCTCAGGGAGATAAGGCTGTGCTTTCGAT
Found at i:35660618 original size:176 final size:176
Alignment explanation
Indices: 35660248--35660565 Score: 426
Period size: 176 Copynumber: 1.8 Consensus size: 176
35660238 TAAGATTTGT
* * * *
35660248 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGTTTTTGATCTACTTCACTGCT
1 TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGCTTTCGATCTACTTCACTGCC
* ** *
35660313 AGTACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGTTGCTCAGGGAGATAAGGCTTG
66 AGTACAAGAAGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAAGGCTTG
* *
35660378 TGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAGATCTACAC
131 TGCTTTAAATCTACTTCACTGC-ACTACAGGAAGACAAGATCTACAC
* * ** *
35660425 TCTTCAACCTACTCCACTGCTGC-TCAGGGAGATAAGGCTGGTGCTTTCGATCTACTTCACTGCC
1 TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGCTTTCGATCTACTTCACTGCC
* **
35660489 AGTACAAGAAGACAAGATCTACACTCTTCAACCTACTCCTTTACTGCTCAAGGAGATAAGG-TTG
66 AGTACAAGAAGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAAGGCTT-
35660553 GTGGC-TTAAATCT
130 GT-GCTTTAAATCT
35660566 GTTTCCCTAC
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
175 2 0.02
176 100 0.82
177 20 0.16
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (176 bp):
TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGCTTTCGATCTACTTCACTGCC
AGTACAAGAAGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAAGGCTTG
TGCTTTAAATCTACTTCACTGCACTACAGGAAGACAAGATCTACAC
Done.