Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 114 of 185
Found at i:35660866 original size:24 final size:24
Alignment explanation
Indices: 35660834--35660892 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
35660824 CAGATTGCCC
*
35660834 CCACTGTAATCTTCAGGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
35660858 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
*
35660882 CCGCTTGTAAT
1 CCAC-TGTAAT
35660893 TTTGGGACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 26 0.81
25 6 0.19
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAT
Found at i:35661915 original size:38 final size:40
Alignment explanation
Indices: 35661865--35661982 Score: 143
Period size: 40 Copynumber: 3.0 Consensus size: 40
35661855 CATTTTTTTA
*
35661865 TTTTTTTA-GACTCAAAGCGCCCTTTACGGGTTTTCA-C-
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACCT
* *
35661902 TTTTTTTAGGACTCAAAGCACCATTTACGAGTTTTCACCT
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACCT
* ** * *
35661942 TTTTTTTAGCACTCAAAATGCCCTTTGCGAGTTTTCTCCT
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACCT
35661982 T
1 T
35661983 GGTCATCTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
37 8 0.12
38 25 0.37
39 1 0.01
40 34 0.50
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (40 bp):
TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACCT
Found at i:35661957 original size:40 final size:37
Alignment explanation
Indices: 35661865--35661958 Score: 125
Period size: 38 Copynumber: 2.4 Consensus size: 37
35661855 CATTTTTTTA
* * *
35661865 TTTTTTTAGACTCAAAGCGCCCTTTACGGGTTTTCAC
1 TTTTTTTAGACTCAAAGCACCATTTACGAGTTTTCAC
35661902 TTTTTTTAGGACTCAAAGCACCATTTACGAGTTTTCACC
1 TTTTTTTA-GACTCAAAGCACCATTTACGAGTTTTCA-C
35661941 TTTTTTTTAGCACTCAAA
1 -TTTTTTTAG-ACTCAAA
35661959 ATGCCCTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
37 8 0.16
38 25 0.50
39 2 0.04
40 15 0.30
ACGTcount: A:0.23, C:0.22, G:0.13, T:0.41
Consensus pattern (37 bp):
TTTTTTTAGACTCAAAGCACCATTTACGAGTTTTCAC
Found at i:35670774 original size:37 final size:37
Alignment explanation
Indices: 35670715--35670820 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
35670705 GTATGATCAT
*
35670715 TTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCAC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
*
35670750 TTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCAC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
35670787 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
35670821 TAAAGCTATC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 7 0.11
36 4 0.06
37 55 0.83
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (37 bp):
TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
Found at i:35671195 original size:235 final size:235
Alignment explanation
Indices: 35670784--35671247 Score: 892
Period size: 235 Copynumber: 2.0 Consensus size: 235
35670774 TAAGTGTAGC
* * *
35670784 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTTCACT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAAGCTATCACCTATCACTTTGTCACT
35670849 TGATCAGAAGTACTCAAATCCGGCGTTCCGCTCAATTTGATCATTTATTCAATTTTCGCATTTTT
66 TGATCAGAAGTACTCAAATCCGGCGTTCCGCTCAATTTGATCATTTATTCAATTTTCGCATTTTT
35670914 ATTTTATTCTCATTTCATCAATAAATATATCTCATCATACATTACATAACTCATGAAATTAACAT
131 ATTTTATTCTCATTTCATCAATAAATATATCTCATCATACATTACATAACTCATGAAATTAACAT
35670979 TTAATCATTAAAGTTCGGCCATATGAACTTACTAAACTAT
196 TTAATCATTAAAGTTCGGCCATATGAACTTACTAAACTAT
*
35671019 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACCTATCACTTTGTCACT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAAGCTATCACCTATCACTTTGTCACT
35671084 TGATCAGAAGTACTCAAATCCGGCGTTCCGCTCAATTTGATCATTTATTCAATTTTCGCATTTTT
66 TGATCAGAAGTACTCAAATCCGGCGTTCCGCTCAATTTGATCATTTATTCAATTTTCGCATTTTT
35671149 ATTTTATTCTCATTTCATCAATAAATATATCTCATCATACATTACATAACTCATGAAATTAACAT
131 ATTTTATTCTCATTTCATCAATAAATATATCTCATCATACATTACATAACTCATGAAATTAACAT
35671214 TTAATCATTAAAGTTCGGCCATATGAACTTACTA
196 TTAATCATTAAAGTTCGGCCATATGAACTTACTA
35671248 TTTCATTATC
Statistics
Matches: 225, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
235 225 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (235 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAAGCTATCACCTATCACTTTGTCACT
TGATCAGAAGTACTCAAATCCGGCGTTCCGCTCAATTTGATCATTTATTCAATTTTCGCATTTTT
ATTTTATTCTCATTTCATCAATAAATATATCTCATCATACATTACATAACTCATGAAATTAACAT
TTAATCATTAAAGTTCGGCCATATGAACTTACTAAACTAT
Found at i:35674155 original size:14 final size:15
Alignment explanation
Indices: 35674129--35674160 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
35674119 GAGCAACAAC
35674129 AATAAAAATAAGATA
1 AATAAAAATAAGATA
35674144 AATAAAAA-AAGATA
1 AATAAAAATAAGATA
35674158 AAT
1 AAT
35674161 CAATAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (15 bp):
AATAAAAATAAGATA
Found at i:35674326 original size:16 final size:16
Alignment explanation
Indices: 35674307--35674339 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
35674297 ATATATATGT
*
35674307 ATATAAAAATTATAAA
1 ATATAAAAAATATAAA
35674323 ATATAAAAAATATAAA
1 ATATAAAAAATATAAA
35674339 A
1 A
35674340 AAATATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
ATATAAAAAATATAAA
Found at i:35674334 original size:53 final size:53
Alignment explanation
Indices: 35674277--35674438 Score: 168
Period size: 53 Copynumber: 3.0 Consensus size: 53
35674267 AAAGTTATAG
*
35674277 AAATATAAAAAGATATATGTATATATATGTATATAAAAATTATAAAATATAAA
1 AAATATAAAAAGATATATATATATATATGTATATAAAAATTATAAAATATAAA
* * *
35674330 AAATATAAAAA-A-ATATATATA-AGTATGTATATATATATTTATGAAAATAAAAA
1 AAATATAAAAAGATATATATATATA-TATGTATATA-AAAATTAT-AAAATATAAA
* * * *
35674383 AAATGTATATAGATATATATATATATATAGATATGTATATAAATTATAAAATATAA
1 AAATATAAAAAGATATATATATATATAT-G-TA--TATAAAAATTATAAAATATAA
35674439 GCTATATATA
Statistics
Matches: 88, Mismatches: 11, Indels: 16
0.77 0.10 0.14
Matches are distributed among these distances:
50 1 0.01
51 18 0.20
52 7 0.08
53 28 0.32
54 1 0.01
55 12 0.14
56 2 0.02
57 10 0.11
58 5 0.06
59 4 0.05
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (53 bp):
AAATATAAAAAGATATATATATATATATGTATATAAAAATTATAAAATATAAA
Found at i:35674471 original size:23 final size:23
Alignment explanation
Indices: 35674395--35674478 Score: 71
Period size: 23 Copynumber: 3.6 Consensus size: 23
35674385 ATGTATATAG
* * *
35674395 ATATATATATATATATAGATATGT
1 ATATATAT-TATAAAAATATATGT
* *
35674419 ATATAAATTAT-AAAATATAAGCT
1 ATATATATTATAAAAATATATG-T
*
35674442 ATATATATTATAAAAATGTATGT
1 ATATATATTATAAAAATATATGT
*
35674465 ATGTATATATATAA
1 ATATATAT-TATAA
35674479 CGGAATTTGA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
22 6 0.12
23 22 0.46
24 20 0.42
ACGTcount: A:0.50, C:0.01, G:0.07, T:0.42
Consensus pattern (23 bp):
ATATATATTATAAAAATATATGT
Found at i:35677271 original size:17 final size:18
Alignment explanation
Indices: 35677244--35677277 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
35677234 TCGTCTCATT
35677244 CTTTCTTCTTTTCTTTCC
1 CTTTCTTCTTTTCTTTCC
35677262 CTTT-TTCTTTTCTTTC
1 CTTTCTTCTTTTCTTTC
35677278 TTTCCTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
CTTTCTTCTTTTCTTTCC
Found at i:35678052 original size:24 final size:24
Alignment explanation
Indices: 35678007--35678054 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
35677997 TTTATAAATA
*
35678007 TTTTTATAAATTTGTATCTATTTT
1 TTTTTATAAATCTGTATCTATTTT
*
35678031 TTTTTATAAAATCT-TATGTATTTT
1 TTTTTAT-AAATCTGTATCTATTTT
35678055 CATCGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTTATAAATCTGTATCTATTTT
Found at i:35687016 original size:22 final size:22
Alignment explanation
Indices: 35686991--35687048 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
35686981 CATGAAGCAA
35686991 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
35687013 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
* *
35687035 TCCCATACCTCCAC
1 CCCCATACCCCCAC
35687049 AGTCCTCGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.29, C:0.55, G:0.03, T:0.12
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:35698444 original size:69 final size:70
Alignment explanation
Indices: 35698324--35698497 Score: 201
Period size: 69 Copynumber: 2.5 Consensus size: 70
35698314 CTTTCCAAGG
* * **
35698324 AAAATCAACTCATATTGCGA-CAGATGAGTTGAGCCGCAAGACACGTTGAGGTATTTTTAATTT-
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
*
35698387 TTTTTT
65 TGTTTT
** * *
35698393 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
35698458 GTTTT
66 GTTTT
** * *
35698463 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
35698498 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 83 0.92
70 7 0.08
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:35698641 original size:76 final size:74
Alignment explanation
Indices: 35698515--35698759 Score: 350
Period size: 76 Copynumber: 3.3 Consensus size: 74
35698505 TTTGTTTTTC
* ** *
35698515 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
35698580 GTTGTTAAAAA
66 GTT-TT-AAAA
*
35698591 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
35698656 GTTTT--CA
66 GTTTTAAAA
* * * * *
35698663 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
35698728 GTTTTTAAAA
66 G-TTTTAAAA
35698738 AAAATCAACTCATATTGCGAGA
1 AAAATCAACTCATATTGCGAGA
35698760 GGTGAGTTAA
Statistics
Matches: 151, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
72 61 0.40
73 4 0.03
75 23 0.15
76 63 0.42
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAA
Found at i:35699187 original size:27 final size:25
Alignment explanation
Indices: 35699157--35699212 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
35699147 CTGTTTTCAT
*
35699157 TATTATGTTTTTGAAAGAATCAACTCA
1 TATTATG-TTTTCAAA-AATCAACTCA
* *
35699184 TATTCTGTTTTCAAAATTCAACTCA
1 TATTATGTTTTCAAAAATCAACTCA
35699209 TATT
1 TATT
35699213 GCGAGAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 13 0.50
26 7 0.27
27 6 0.23
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (25 bp):
TATTATGTTTTCAAAAATCAACTCA
Found at i:35699313 original size:73 final size:72
Alignment explanation
Indices: 35699186--35699383 Score: 283
Period size: 73 Copynumber: 2.7 Consensus size: 72
35699176 TCAACTCATA
* * *
35699186 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
1 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAA
35699251 TTTCAAT
66 TTTCAAT
*
35699258 TTCTGCTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTA
1 TTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTA
35699323 ATTTCAAT
65 ATTTCAAT
*
35699331 TTCTGTTGTCAAAAAAAATT-AACTCATATTGCGA-AAAGTGAGTTGAGCCTCAG
1 TTCTGTTTTC----AAAATTCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCAG
35699384 TTCACATGTT
Statistics
Matches: 114, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
72 9 0.08
73 68 0.60
74 3 0.03
75 28 0.25
76 6 0.05
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (72 bp):
TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAA
TTTCAAT
Found at i:35700063 original size:286 final size:287
Alignment explanation
Indices: 35699541--35700089 Score: 767
Period size: 286 Copynumber: 1.9 Consensus size: 287
35699531 CTGAAGCTAT
* * *
35699541 AGTGGAACCGGTCAAAAGTTGCAAGTCTTGTCTCCCTGAGGTCGCAGTGGAACTGACCGAGGATA
1 AGTGGAACAGGTCAAAAGTTGCAAGTCTTGTCTCCCTGAGGTCGCAGCGGAAATGACCGAGGATA
* * * * *
35699606 TCAAATCTTGTCTCGCTAGAGTTACAGAAGAGAAGATCACGAATCTCATCTCACTGAAGTGATAA
66 TCAAATCTTGCCTCGCTAAAGTTACAGAAGAGAAGATCACAAACCTCATCTCACTGAAGCGATAA
* * *
35699671 AAGAGCAGATTGAAGCTGCAGATCTTATCTTTATGAAGCTACATGGAAGCAGATCAAAGCCACAA
131 AAGAGCAGATTAAAGCTGCAGATCTCATCTTTATGAAGCTACATGGAAGCAAATCAAAGCCACAA
* * *
35699736 ATCACATATCTTTGAAGTTACATTGGAGTAGATCGAAGCTACAAGGCATATGTCAAAAGATGTAG
196 ATCACATATCCTTGAAGTTACATTGGAGTAGATCGAAGCTACAAGGCATATATCAAAAGATGCAG
35699801 TGGATTGAATCTAAAGCTACAAGATGC
261 TGGATTGAATCTAAAGCTACAAGATGC
* * * *
35699828 AGTGGAGCAGGTCAAAAGTTTCAAGTCTTGTCTCCCTGAGGTCGCAGCGGAAATGATCGAGGGTA
1 AGTGGAACAGGTCAAAAGTTGCAAGTCTTGTCTCCCTGAGGTCGCAGCGGAAATGACCGAGGATA
** * * * *
35699893 TCAAATCTTGCCTTTCTAAAGTTGCAGAAGAGAAGA-CCCAAACCTTATCTCACTGAAGCGATAG
66 TCAAATCTTGCCTCGCTAAAGTTACAGAAGAGAAGATCACAAACCTCATCTCACTGAAGCGATAA
* * * * * * * *
35699957 AAGGGCAGATTAAAGTTGTAGATCTCATCTTTCTGAAGTTATATGGAAGCAAATCGAAGCTACAA
131 AAGAGCAGATTAAAGCTGCAGATCTCATCTTTATGAAGCTACATGGAAGCAAATCAAAGCCACAA
* * * *
35700022 ATCTCATATCCTTGAAGTTACATTGGAGTAGATTGAAGCTACAAGGCGTATATCAGAAGATGCAG
196 ATCACATATCCTTGAAGTTACATTGGAGTAGATCGAAGCTACAAGGCATATATCAAAAGATGCAG
35700087 TGG
261 TGG
35700090 GATGAAACGA
Statistics
Matches: 226, Mismatches: 36, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
286 137 0.61
287 89 0.39
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (287 bp):
AGTGGAACAGGTCAAAAGTTGCAAGTCTTGTCTCCCTGAGGTCGCAGCGGAAATGACCGAGGATA
TCAAATCTTGCCTCGCTAAAGTTACAGAAGAGAAGATCACAAACCTCATCTCACTGAAGCGATAA
AAGAGCAGATTAAAGCTGCAGATCTCATCTTTATGAAGCTACATGGAAGCAAATCAAAGCCACAA
ATCACATATCCTTGAAGTTACATTGGAGTAGATCGAAGCTACAAGGCATATATCAAAAGATGCAG
TGGATTGAATCTAAAGCTACAAGATGC
Found at i:35700468 original size:22 final size:22
Alignment explanation
Indices: 35700442--35700499 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
35700432 CATGAAGCAA
*
35700442 CCCCATACCCCCACTGCAACAG
1 CCCCATACCCCCACTACAACAG
35700464 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
* *
35700486 TCCCATACCTCCAC
1 CCCCATACCCCCAC
35700500 AGTCCTCGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.28, C:0.55, G:0.05, T:0.12
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:35701626 original size:16 final size:15
Alignment explanation
Indices: 35701593--35701635 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
35701583 GTTACTATTA
35701593 TATTTATTATTATAT
1 TATTTATTATTATAT
35701608 TATTTATT-TTCACTAT
1 TATTTATTATT-A-TAT
35701624 TA-TTATTATTAT
1 TATTTATTATTAT
35701636 TTTCATCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 15 0.60
16 7 0.28
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTTATTATTATAT
Found at i:35701635 original size:21 final size:21
Alignment explanation
Indices: 35701600--35701650 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
35701590 TTATATTTAT
35701600 TATTA-TATTATTTATTTTCA
1 TATTATTATTATTTATTTTCA
35701620 CTATTATTATTA-TTATTTTCA
1 -TATTATTATTATTTATTTTCA
35701641 TCATTATTAT
1 T-ATTATTAT
35701651 ACATATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.79
22 5 0.18
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (21 bp):
TATTATTATTATTTATTTTCA
Found at i:35714677 original size:69 final size:70
Alignment explanation
Indices: 35714557--35714730 Score: 212
Period size: 69 Copynumber: 2.5 Consensus size: 70
35714547 CTTTCCAAGG
**
35714557 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
35714620 T-TTTT
65 TGTTTT
** * *
35714625 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
35714690 TGTTTT
65 TGTTTT
** * *
35714696 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
35714731 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
69 85 0.92
70 3 0.03
71 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:35714862 original size:75 final size:74
Alignment explanation
Indices: 35714748--35715160 Score: 580
Period size: 75 Copynumber: 5.5 Consensus size: 74
35714738 TTTGTTTTTC
* **
35714748 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
35714813 GTTGTTAAAA
66 GTT-TTAAAA
35714823 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
35714888 GTTGTTAAAA
66 GTT-TTAAAA
35714898 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
35714963 GTTTT--CA
66 GTTTTAAAA
* * * * *
35714970 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
35715035 GTTTTCAAAA
66 GTTTT-AAAA
* ** * * *
35715045 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAAGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
35715109 TCTGTTTTTAAAA
63 TCTG-TTTTAAAA
** *
35715122 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
35715161 ATTACACACT
Statistics
Matches: 311, Mismatches: 19, Indels: 13
0.91 0.06 0.04
Matches are distributed among these distances:
72 66 0.21
74 3 0.01
75 175 0.56
77 62 0.20
78 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAA
Found at i:35715045 original size:147 final size:148
Alignment explanation
Indices: 35714748--35715155 Score: 588
Period size: 147 Copynumber: 2.7 Consensus size: 148
35714738 TTTGTTTTTC
*
35714748 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
35714813 GTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
66 GTT-TT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAAT
35714878 TTCAATTTCTGTTGTTAAAA
129 TTCAATTTCTGTTGTTAAAA
**
35714898 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * *
35714963 GTTTT-CAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
66 GTTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
35715027 CAATTTCTGTT-TTCAAAA
131 CAATTTCTGTTGTT-AAAA
* * * *
35715045 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAAGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
**
35715109 TCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63 TCTG-TTTT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
35715156 TTCAGATTAC
Statistics
Matches: 231, Mismatches: 20, Indels: 12
0.88 0.08 0.05
Matches are distributed among these distances:
146 4 0.02
147 102 0.44
149 25 0.11
150 69 0.30
152 31 0.13
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (148 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
CAATTTCTGTTGTTAAAA
Found at i:35715564 original size:73 final size:73
Alignment explanation
Indices: 35715450--35715673 Score: 278
Period size: 73 Copynumber: 3.0 Consensus size: 73
35715440 AAGCCTTTTG
*
35715450 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGTTTATC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
35715515 GGTCTTTTCA
64 GGTCTTTTCA
* *
35715525 ATTTCTGTTTGTCAAAAATCAACTCATATCT-CGAGAGGTGAGTTGAGCCTC-GGCTCACATGCT
1 ATTTCTGTTTATCAAAAATCAACTCATAT-TGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCT
*
35715588 TAGGTCTTTTCA
62 GAGGTCTTTTCA
* *
35715600 ATTTCTGTTCATC--AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGAGG-CACGCTGAG
1 ATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAG
* *
35715662 GTATTCTCA
65 GTCTTTTCA
35715671 ATT
1 ATT
35715674 AATTTTTTTT
Statistics
Matches: 132, Mismatches: 10, Indels: 18
0.82 0.06 0.11
Matches are distributed among these distances:
71 17 0.13
72 3 0.02
73 69 0.52
74 1 0.01
75 42 0.32
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (73 bp):
ATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TCTTTTCA
Found at i:35715723 original size:234 final size:231
Alignment explanation
Indices: 35715304--35715775 Score: 524
Period size: 234 Copynumber: 2.0 Consensus size: 231
35715294 CTACTTTTTC
* *
35715304 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCGCACGCTGAGGTATTTTCAA-TTTT
* * ** *
35715369 ATGTTTTAATTTCAACTCATATTGCGTGAAGTGAGTTGAGCCTCAGGACACACGCTGAGGTATTT
65 ATGTTTCAATATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTC
* * ** * *
35715434 TCAATTAAGCCTTTTGATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
128 TCAATTAAGCCTTTTAATTTATACTTTTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAA
* * * *
35715499 CCTCAGG-ACACGCTGAGGTCTTTTCAATTTCTGTTTGTCA
192 CCTCAGGCACACGCCGAGGTATTTTCAAATT-TGTTTGGCA
* * * *
35715539 AAAATCAACTCATATCT-CGAGAGGTGAGTTGAGCCTCGGCTCACATGCTTAGGTCTTTTCAA-T
1 AAAATCAACTCATAT-TGCAAGAGGTGAGTTGAGCCTCGGCGCAC--GCTGAGGTATTTTCAATT
* *
35715602 TTCTGTTCATCAA-ATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGAGG-CACGCTGAGGTA
63 TTATGTT--TCAATATCAACTCATATTGCAAGAAGTGAGTTGAGCCTC-AGGACACGCTGAGGTA
*** *
35715665 TTCTCAATTAATTTTTTTTCAATTTATACTTTTC-AAGAATCAACTCATATTACGAGAGGTGAGT
125 TTCTCAATTAA-GCCTTTT-AATTTATACTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGT
*
35715729 TGAACCTCAGGTCACATGCCGAGGTATTTTCAAATTTGTTTGGCA
188 TGAACCTCAGG-CACACGCCGAGGTATTTTCAAATTTGTTTGGCA
35715774 AA
1 AA
35715776 TTCTGTTTTC
Statistics
Matches: 199, Mismatches: 28, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
234 60 0.30
235 59 0.30
236 60 0.30
237 20 0.10
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (231 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCGCACGCTGAGGTATTTTCAATTTTA
TGTTTCAATATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTCTCA
ATTAAGCCTTTTAATTTATACTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAACCTC
AGGCACACGCCGAGGTATTTTCAAATTTGTTTGGCA
Found at i:35716338 original size:53 final size:53
Alignment explanation
Indices: 35716258--35716368 Score: 204
Period size: 53 Copynumber: 2.1 Consensus size: 53
35716248 GCAAGACCAG
*
35716258 GCAAAATTGGCCTCTCTTTATGTCTTTGCTCTATTCCCGTTATACGATAATGA
1 GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCCCGTTATACGATAATGA
*
35716311 GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCTCGTTATACGATAATGA
1 GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCCCGTTATACGATAATGA
35716364 GCAAA
1 GCAAA
35716369 GAGGGGCAGC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (53 bp):
GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCCCGTTATACGATAATGA
Found at i:35721538 original size:18 final size:18
Alignment explanation
Indices: 35721515--35721555 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
35721505 ATAGATCAAG
35721515 TATGAAAATTACATGCAA
1 TATGAAAATTACATGCAA
35721533 TATGAAAATTACATGCAA
1 TATGAAAATTACATGCAA
35721551 TATGA
1 TATGA
35721556 TCTAAACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (18 bp):
TATGAAAATTACATGCAA
Found at i:35725963 original size:30 final size:31
Alignment explanation
Indices: 35725912--35725972 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
35725902 TAAAAATAGT
*** *
35725912 ATATAAAATTAGAATTTTAAAT-AGTATCTA
1 ATATAAAATTAGAACAGTAAATCAGGATCTA
35725942 ATATAAAATTAGAACAGTAAATCAGGATCTA
1 ATATAAAATTAGAACAGTAAATCAGGATCTA
35725973 TCATGTCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.33
Consensus pattern (31 bp):
ATATAAAATTAGAACAGTAAATCAGGATCTA
Found at i:35730452 original size:31 final size:31
Alignment explanation
Indices: 35730416--35730482 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
35730406 GATTAGAAAT
* *
35730416 AGTTATTGAATTATT-TAAAGGTTTTCATTTA
1 AGTTATTAAATTATTGGAAA-GTTTTCATTTA
*
35730447 AGTTATTAAATTATTGGAAAGTTTTTATTTA
1 AGTTATTAAATTATTGGAAAGTTTTCATTTA
35730478 AGTTA
1 AGTTA
35730483 CTAGGTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 29 0.91
32 3 0.09
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (31 bp):
AGTTATTAAATTATTGGAAAGTTTTCATTTA
Found at i:35732292 original size:20 final size:20
Alignment explanation
Indices: 35732255--35732293 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
35732245 AAATTATTTT
* *
35732255 TAAATTTTAATTTGAATATA
1 TAAATTATAATTTAAATATA
*
35732275 TAAATTATATTTTAAATAT
1 TAAATTATAATTTAAATAT
35732294 TAAGGCTACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
TAAATTATAATTTAAATATA
Found at i:35733345 original size:31 final size:30
Alignment explanation
Indices: 35733310--35733388 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 30
35733300 TTTTAAATGC
*
35733310 ATTTTAATTAATTAATATAAAT-TATTTATAA
1 ATTTTAATTAAAT-ATATAAATATATTTAT-A
35733341 ATTTTAATTTAAATATATAAATAATATTTATA
1 ATTTTAA-TTAAATATATAAAT-ATATTTATA
35733373 ATTTATAA-TAAATATA
1 ATTT-TAATTAAATATA
35733389 AATAGGGGAC
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
31 23 0.53
32 10 0.23
33 10 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTTTAATTAAATATATAAATATATTTATA
Found at i:35733379 original size:20 final size:20
Alignment explanation
Indices: 35733333--35733380 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
35733323 AATATAAATT
**
35733333 ATTTATAAATTTTAATTTAA
1 ATTTATAAATAATAATTTAA
*
35733353 ATATATAAATAAT-ATTTATA
1 ATTTATAAATAATAATTTA-A
35733373 ATTTATAA
1 ATTTATAA
35733381 TAAATATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTATAAATAATAATTTAA
Found at i:35733382 original size:19 final size:19
Alignment explanation
Indices: 35733347--35733392 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
35733337 ATAAATTTTA
35733347 ATTTAAATATATAAATAAT
1 ATTTAAATATATAAATAAT
*
35733366 ATTTATAATTTAT-AATAA-
1 ATTTA-AATATATAAATAAT
*
35733384 ATATAAATA
1 ATTTAAATA
35733393 GGGGACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.13
18 4 0.17
19 10 0.43
20 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTTAAATATATAAATAAT
Found at i:35733580 original size:16 final size:16
Alignment explanation
Indices: 35733559--35733590 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
35733549 GAGTCGATTA
35733559 AGTCTTAAATCGGTTG
1 AGTCTTAAATCGGTTG
35733575 AGTCTTAAATCGGTTG
1 AGTCTTAAATCGGTTG
35733591 GTATTAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (16 bp):
AGTCTTAAATCGGTTG
Found at i:35733971 original size:18 final size:19
Alignment explanation
Indices: 35733930--35733971 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
35733920 TACAAAAAAT
*
35733930 AAAAATCAAAATAATTTTC
1 AAAAATCAAAATAATTTTA
*
35733949 AAAAATCAATAT-ATTTTA
1 AAAAATCAAAATAATTTTA
35733967 AAAAA
1 AAAAA
35733972 ATTCAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATCAAAATAATTTTA
Found at i:35733971 original size:19 final size:19
Alignment explanation
Indices: 35733930--35733997 Score: 57
Period size: 19 Copynumber: 3.3 Consensus size: 19
35733920 TACAAAAAAT
* *
35733930 AAAAATCAAAATAATTTT-C
1 AAAAATCAATAT-ATTTTAA
35733949 AAAAATCAATATATTTTAA
1 AAAAATCAATATATTTTAA
35733968 AAAAATTCAAATTTTATATTTTAA
1 AAAAA-TC-AA---TATATTTTAA
35733992 AAAAAT
1 AAAAAT
35733998 TATAAAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 5 0.12
19 16 0.39
20 2 0.05
21 2 0.05
23 1 0.02
24 15 0.37
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATCAATATATTTTAA
Found at i:35736253 original size:31 final size:31
Alignment explanation
Indices: 35736178--35736253 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
35736168 TCAGTTCTTT
*
35736178 TTAATTGAATTT-TAAAAGTATTGATATTGTA
1 TTAATT-AATTTCTTAAAGTATTGATATTGTA
*
35736209 TTAATTAATTTCTTAAAGTATTGGTATTGTA
1 TTAATTAATTTCTTAAAGTATTGATATTGTA
35736240 TTAATTAATTTCTT
1 TTAATTAATTTCTT
35736254 TCATCAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 5 0.12
31 37 0.88
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (31 bp):
TTAATTAATTTCTTAAAGTATTGATATTGTA
Found at i:35746684 original size:18 final size:18
Alignment explanation
Indices: 35746661--35746697 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
35746651 CCGAGAAATG
35746661 GATTCGTAAGGGTTGTGA
1 GATTCGTAAGGGTTGTGA
35746679 GATTCGTAAGGGTTGTGA
1 GATTCGTAAGGGTTGTGA
35746697 G
1 G
35746698 GCTTATCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.05, G:0.41, T:0.32
Consensus pattern (18 bp):
GATTCGTAAGGGTTGTGA
Found at i:35750443 original size:59 final size:59
Alignment explanation
Indices: 35750351--35750466 Score: 232
Period size: 59 Copynumber: 2.0 Consensus size: 59
35750341 CCTCTACTGA
35750351 TAGTTTCGGGTCTACTCTTGGATGGCACCACTCCTTCAGTTGGAGCAAGTGCGTTACGT
1 TAGTTTCGGGTCTACTCTTGGATGGCACCACTCCTTCAGTTGGAGCAAGTGCGTTACGT
35750410 TAGTTTCGGGTCTACTCTTGGATGGCACCACTCCTTCAGTTGGAGCAAGTGCGTTAC
1 TAGTTTCGGGTCTACTCTTGGATGGCACCACTCCTTCAGTTGGAGCAAGTGCGTTAC
35750467 ATTCTACATC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.17, C:0.24, G:0.27, T:0.32
Consensus pattern (59 bp):
TAGTTTCGGGTCTACTCTTGGATGGCACCACTCCTTCAGTTGGAGCAAGTGCGTTACGT
Found at i:35753017 original size:47 final size:45
Alignment explanation
Indices: 35752871--35753087 Score: 159
Period size: 47 Copynumber: 4.7 Consensus size: 45
35752861 TATACGTGCT
* * * * * **
35752871 GATGCATGTACCAGACATGTCTTACACTAGC-A-CAACTCTTAGAA
1 GATGCATATCCCAGACATGTCTTACACTGGCAATCATCTC-TGGCC
* * * * *
35752915 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCC
1 GATGCATATCCCAGACATGTCTTACACTGGCAATCATC-TC-TGGCC
* *
35752962 GATGCATATCCCAAACATGTCTTACACTGGCAATCGTCTCTGTGCC
1 GATGCATATCCCAGACATGTCTTACACTGGCAATCATCTCTG-GCC
* * * * * * *
35753008 GATGCCATATCCCAGGCATGGCATTATACTGACACTCATAATTTGGCC
1 GATG-CATATCCCAGACATGTC-TTACACTGGCAATCAT-CTCTGGCC
*
35753056 GATGCATGTCCCAGACATGTCTTACACTGGCA
1 GATGCATATCCCAGACATGTCTTACACTGGCA
35753088 CACAAGAAAT
Statistics
Matches: 135, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
44 27 0.20
45 2 0.01
46 21 0.16
47 63 0.47
48 19 0.14
49 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (45 bp):
GATGCATATCCCAGACATGTCTTACACTGGCAATCATCTCTGGCC
Found at i:35767248 original size:47 final size:46
Alignment explanation
Indices: 35767191--35767318 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 46
35767181 ATCGTCGAGG
* * *
35767191 CCGATGCATGTCCCAAACATGTCTTACACTGGCAGTCGT-CTCTGTC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCAGTCATAATCTG-C
* * * * *
35767237 CCGATGCCATGTCCCAGACATGGTCTTATACTGACATTCATAATTTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAGTCATAATCTGC
35767285 CCGATGCATGTCCCAGACATGTCTTACACTGGCA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA
35767319 CACAAGGAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
46 18 0.26
47 27 0.39
48 21 0.30
49 3 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCAGTCATAATCTGC
Found at i:35778722 original size:48 final size:48
Alignment explanation
Indices: 35778647--35778742 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
35778637 GTACATTGCC
* *
35778647 CTCAATGTACAAAGATAGATTAATCAAAATAAAGAAATTCATAAGAGG
1 CTCAATGTACAAAGATAGATTAATCAAAATAAACAAAATCATAAGAGG
**
35778695 CTCAATGTACAAAGATAGATTGTTCAAAATAAACAAAATCATAAGAGG
1 CTCAATGTACAAAGATAGATTAATCAAAATAAACAAAATCATAAGAGG
35778743 GAAAGAGGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.23
Consensus pattern (48 bp):
CTCAATGTACAAAGATAGATTAATCAAAATAAACAAAATCATAAGAGG
Found at i:35779096 original size:20 final size:20
Alignment explanation
Indices: 35779073--35779118 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
35779063 AATAAAATTG
*
35779073 AAATGAAAATAAAAAGAAAA
1 AAATAAAAATAAAAAGAAAA
*
35779093 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAAGAAAA
*
35779113 AGATAA
1 AAATAA
35779119 GAGGATTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (20 bp):
AAATAAAAATAAAAAGAAAA
Found at i:35779118 original size:14 final size:14
Alignment explanation
Indices: 35779078--35779118 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
35779068 AATTGAAATG
*
35779078 AAAATAAAAAGAAA
1 AAAATAAAAAGATA
35779092 AAAAT-AAAA-ATA
1 AAAATAAAAAGATA
35779104 AAAATAAAAAGATA
1 AAAATAAAAAGATA
35779118 A
1 A
35779119 GAGGATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 7 0.29
13 8 0.33
14 9 0.38
ACGTcount: A:0.83, C:0.00, G:0.05, T:0.12
Consensus pattern (14 bp):
AAAATAAAAAGATA
Found at i:35793995 original size:76 final size:75
Alignment explanation
Indices: 35793868--35794019 Score: 259
Period size: 76 Copynumber: 2.0 Consensus size: 75
35793858 TTAGGTTGAT
* *
35793868 AGCAGGAATAAGGAGTATAAACTCCTCGAACCTCCCTGACCATTCACTAAAGAGGTAAGTCGAGC
1 AGCAGGAATAAGAAGTATAAACTCCTCGAACCACCCTGACCATTCACTAAAGAGGTAAGTCGAGC
35793933 TTAGACTATA
66 TTAGACTATA
* *
35793943 ANGCAGGAATGAGAAGTATAAACTCCTTGAACCACCCTGACCATTCACTAAAGAGGTAAGTCGAG
1 A-GCAGGAATAAGAAGTATAAACTCCTCGAACCACCCTGACCATTCACTAAAGAGGTAAGTCGAG
35794008 CTTAGACTATA
65 CTTAGACTATA
35794019 A
1 A
35794020 ATAAGCGCTT
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
75 1 0.01
76 71 0.99
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (75 bp):
AGCAGGAATAAGAAGTATAAACTCCTCGAACCACCCTGACCATTCACTAAAGAGGTAAGTCGAGC
TTAGACTATA
Found at i:35797587 original size:40 final size:40
Alignment explanation
Indices: 35797488--35797704 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
35797478 GGATGATAAT
* * *
35797488 CGGGCTAAGTCCCAAAGGCATTT-TACGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGT--GCGAGTTACTA-TATC
* *
35797529 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
35797569 CGGGCTAAGTTCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
35797609 CGGGCTAAGTCCCGAAGGCATTGGCGGGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
35797649 CGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
35797688 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
35797705 TACTTGGCTT
Statistics
Matches: 152, Mismatches: 21, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
38 15 0.10
39 14 0.09
40 100 0.66
41 22 0.14
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:35798836 original size:6 final size:6
Alignment explanation
Indices: 35798819--35798861 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
35798809 TCCTCCTATC
*
35798819 TTTTTA TCTTTA TTTTTA TTTTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTTTTA TTTTT
35798862 TTCATTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:35798844 original size:20 final size:20
Alignment explanation
Indices: 35798819--35798863 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
35798809 TCCTCCTATC
35798819 TTTTTATCTTTATTTTTATT
1 TTTTTATCTTTATTTTTATT
*
35798839 TTTTTATTTTTATTTTTATT
1 TTTTTATCTTTATTTTTATT
35798859 TTTTT
1 TTTTT
35798864 CATTTCAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTATCTTTATTTTTATT
Found at i:35798846 original size:14 final size:14
Alignment explanation
Indices: 35798819--35798883 Score: 64
Period size: 14 Copynumber: 4.7 Consensus size: 14
35798809 TCCTCCTATC
*
35798819 TTTTTATCTTTA--
1 TTTTTATTTTTATT
35798831 TTTTTATTTTT-TT
1 TTTTTATTTTTATT
35798844 ATTTTTATTTTTATT
1 -TTTTTATTTTTATT
**
35798859 TTTTTCATTTCAATT
1 TTTTT-ATTTTTATT
35798874 TTTTTATTTT
1 TTTTTATTTT
35798884 CTTTTGAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 10 0.23
14 20 0.45
15 14 0.32
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:35798875 original size:20 final size:21
Alignment explanation
Indices: 35798832--35798888 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
35798822 TTATCTTTAT
* *
35798832 TTTTATTTTTTT-ATTTTTAT
1 TTTTATTTTTTTCATTTTCAA
35798852 TTTTATTTTTTTCA-TTTCAA
1 TTTTATTTTTTTCATTTTCAA
35798872 TTTT-TTTATTTTC-TTTT
1 TTTTATTT-TTTTCATTTT
35798889 GAAAGACATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 3 0.09
20 28 0.88
21 1 0.03
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTATTTTTTTCATTTTCAA
Found at i:35801796 original size:13 final size:13
Alignment explanation
Indices: 35801774--35801806 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
35801764 TTGCTTTAGT
35801774 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
35801786 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
*
35801799 TTATTTTA
1 TTAGTTTA
35801807 ATAAACAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:35846727 original size:85 final size:85
Alignment explanation
Indices: 35846558--35846717 Score: 302
Period size: 85 Copynumber: 1.9 Consensus size: 85
35846548 CCGGCCATGA
*
35846558 GCTAAGGCCGAATGTAACTTTGCATGTTAATGAGCAATGCATGTGTTAAATTGATGAAAAGGGGG
1 GCTAAGGCCGAATGTAACTTTGCATGTTAATGAGCAATGCATGTGTTAAATCGATGAAAAGGGGG
35846623 AGGATGCTTTCAAGATGTGT
66 AGGATGCTTTCAAGATGTGT
*
35846643 GCTAAGGCCGAATGTAACTTTGCATGTTGATGAGCAATGCATGTGTTAAATCGATGAAAAGGGGG
1 GCTAAGGCCGAATGTAACTTTGCATGTTAATGAGCAATGCATGTGTTAAATCGATGAAAAGGGGG
35846708 AGGATGCTTT
66 AGGATGCTTT
35846718 ACTAGTGTGT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 73 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.29
Consensus pattern (85 bp):
GCTAAGGCCGAATGTAACTTTGCATGTTAATGAGCAATGCATGTGTTAAATCGATGAAAAGGGGG
AGGATGCTTTCAAGATGTGT
Found at i:35847278 original size:40 final size:39
Alignment explanation
Indices: 35847195--35847452 Score: 218
Period size: 40 Copynumber: 6.5 Consensus size: 39
35847185 TTGAATGCTG
* * * * *
35847195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGT-AGTAAA
* * *
35847235 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATAGTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAG-TAGTAAA
*
35847275 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TAGTAAA
*
35847315 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAG-TAAA
* * *
35847355 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TAGTAAA
* * * * ** * *
35847394 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAG-TAAA
*
35847434 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
35847453 TACGTGATTT
Statistics
Matches: 182, Mismatches: 28, Indels: 17
0.80 0.12 0.07
Matches are distributed among these distances:
39 48 0.26
40 125 0.69
41 9 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTAAA
Found at i:35847332 original size:80 final size:79
Alignment explanation
Indices: 35847195--35847452 Score: 261
Period size: 80 Copynumber: 3.3 Consensus size: 79
35847185 TTGAATGCTG
* * * * * * *
35847195 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGTTAAG-TCCCGAAGGCATT
35847259 TGTGCGAGATAG-TAAA
64 TGTGCGAG-TAGTTAAA
* *
35847275 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATTT
*
35847340 GTGCGAGTTGTTAAA
65 GTGCGAGTAGTTAAA
* * * * * *
35847355 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATTTG
** * * *
35847420 AACGAGGAGCTATA
66 TGCGAGTAGTTAAA
*
35847434 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
35847453 TACGTGATTT
Statistics
Matches: 150, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 49 0.33
80 83 0.55
81 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTAGTTAAA
Found at i:35847399 original size:39 final size:40
Alignment explanation
Indices: 35847195--35847417 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
35847185 TTGAATGCTG
* * * * * *
35847195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
35847235 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATAGTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
35847275 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
35847315 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
35847355 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
35847394 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
35847418 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:35847437 original size:79 final size:80
Alignment explanation
Indices: 35847271--35847452 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
35847261 TGCGAGATAG
* * *
35847271 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
35847336 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * *
35847351 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
35847415 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
* *
35847430 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
35847453 TACGTGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:35856647 original size:16 final size:16
Alignment explanation
Indices: 35856626--35856674 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
35856616 TTTGGTTCGC
35856626 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
35856642 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
35856658 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
35856674 T
1 T
35856675 TTAATAGCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:35856725 original size:45 final size:44
Alignment explanation
Indices: 35856658--35856752 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
35856648 GGATTAGAGG
** *
35856658 TGTAATGGAATAGAGGTTTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
35856703 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
35856747 TGTAAT
1 TGTAAT
35856753 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:35856922 original size:25 final size:25
Alignment explanation
Indices: 35856890--35856944 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
35856880 TAATTTAATC
*
35856890 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
35856914 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
35856939 ATATAT
1 ATATAT
35856945 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:35867580 original size:42 final size:41
Alignment explanation
Indices: 35867476--35867683 Score: 165
Period size: 42 Copynumber: 4.9 Consensus size: 41
35867466 GAGCCTCCAT
*
35867476 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
35867519 TAACCTTGATGCTGGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCT-GGATGTGCGGGAGCCTCGAGCACCATCGG
* *
35867562 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGC-TGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
35867604 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGC-TGGATGTGCGGGAGCCTC-GAGCACCATCGG
* *
35867646 CACCTCGGTGCTATGATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCT-GGATGTGCGGGAGCC-TCGAGCACCA
35867684 AAGCTAAAGT
Statistics
Matches: 132, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
40 1 0.01
41 14 0.11
42 62 0.47
43 45 0.34
44 10 0.08
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (41 bp):
CACCTTGGTGCTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:35867920 original size:24 final size:24
Alignment explanation
Indices: 35867893--35867971 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
35867883 CCGGTTAGGT
*
35867893 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
35867917 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
35867941 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
35867965 TTCCGGT
1 TCCCGGT
35867972 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:35868053 original size:42 final size:42
Alignment explanation
Indices: 35867989--35868142 Score: 159
Period size: 42 Copynumber: 3.6 Consensus size: 42
35867979 GCCCTTGGTC
* *
35867989 GTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGAT
1 GTGCAGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTGGAT
* * * * **
35868031 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCAGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGG-AT
* * *
35868075 -TGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
*
35868116 GTGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCAGGAGCCTCGGGCACCATCGGCA
35868143 NNNNNNNNNN
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.02
42 57 0.64
43 28 0.31
44 2 0.02
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.16
Consensus pattern (42 bp):
GTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
Found at i:35868125 original size:85 final size:85
Alignment explanation
Indices: 35867979--35868142 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 85
35867969 GGTAGCATAG
* * *
35867979 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCCC
1 GCCCTTGGTAGTGCAGGAGCCTCGGGCACCATCGGCACCCTGGTGCTACGATGTGCAGGAGCCCC
35868044 GGACACCATCGGCAAACTAA
66 GGACACCATCGGCAAACTAA
* * * * *
35868064 GCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGCA-CCTCGGTGCTTCGATGTGCGGGAGCCT
1 GCCCTTGGTAGTGCAGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTACGATGTGCAGGAGCCC
*
35868128 CGGGCACCATCGGCA
65 CGGACACCATCGGCA
35868143 NNNNNNNNNN
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 3 0.04
85 66 0.96
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (85 bp):
GCCCTTGGTAGTGCAGGAGCCTCGGGCACCATCGGCACCCTGGTGCTACGATGTGCAGGAGCCCC
GGACACCATCGGCAAACTAA
Found at i:35871683 original size:43 final size:43
Alignment explanation
Indices: 35871620--35874136 Score: 2931
Period size: 42 Copynumber: 59.5 Consensus size: 43
35871610 GGGCACCATC
* *
35871620 GGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35871663 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35871705 GACACCATCGGCAACCTGGGCCCCTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35871748 GG-ACCATCGGTAACCTAGGCCCCTGGTCGTGACGGGAGCCTCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTG-CGGGAGCCTCG
* * *
35871791 GACACCATC-GAAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35871832 GACACCATCGGCAACCTGGGCCCCTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35871875 AG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAAGCCTTG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
35871917 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
35871960 GGCACCAACGGCACCCTAGGCCCCTGGTCGTCCGAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35872003 GGCACCATCGGC-ACCTGGGCCCTTGGTCGTGCGAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
35872045 GG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** * *
35872086 GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCCGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCG
* * * * *
35872128 GGCACTATCGGC-ACCTAGGCCCTTGGTCGGGCGAGAGACT-G
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * * *
35872169 GGCAGCATCAGAAACCCAGGCCCTTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** * *
35872212 GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCCGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCG
* * * * *
35872254 GGCACTATCGGC-ACCTAGGCCCTTGGTCGGGCGAGAGACT-G
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * * *
35872295 GGCAGCATCAGAAACCCAGGCCCTTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** * *
35872338 GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCCGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCG
* * * *
35872380 GGCACTATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGACT-G
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * * *
35872421 GGCAGCATCAGAAACCCAGGCCCTTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35872464 GGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
35872507 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35872550 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35872592 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35872635 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35872677 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35872720 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35872762 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35872805 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35872847 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35872890 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35872932 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35872975 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
35873017 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35873060 GGCACCACCGGCATCCTAGGCCCCTGGTCGT-CTGAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGGAGCCTCG
* * * *
35873103 GGCACCGTTGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* **
35873145 GG-ACCATCGGC-ACCTAGGCCCCTGGTCATGCGAAAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35873186 GGCACCATCGGC-ACCTAGGCCCTTGGTCGTACGAGAGCCT-G
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
35873227 GGACACCATCGGCAACCTAGACCCCTGATCGTACGGGAGCCTCA
1 GG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35873271 GACACCATC-GAAACCTAGGCCCCTGGTCGTACGGGAG-CTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35873312 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGCAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
35873355 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35873398 GGCACCATCGGC-ACCTTAGGCCCCTGGTCGTCCGAGAGCCTCG
1 GGCACCATCGGCAACC-TAGGCCCCTGGTCGTGCGGGAGCCTCG
* *** **
35873441 GGCACCATTGGC-ACCTAGGCTATTGGTCGTGCAAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35873483 GG-ACCATTGGC-ACCAAGGCCCTTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35873524 GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCT-G
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
35873565 GGCACCATCGGAAACCCAGGCACTTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
35873608 GGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTTG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35873651 GGCACCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35873694 GACACCATCGGCAACCTAGGCCCCTGGTCGTACGGGAG-CTCA
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35873736 GACACCATCGGGCAACCTAGGCCCCTGGTCTTGCGGGAGCCTCG
1 GGCACCATC-GGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
35873780 GG-ACCATCGGCAACCTAGGCCCCTGGTCCTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
35873822 GGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
35873865 GGCACCATCGGCACCCTAGGCCCCTGGTCGT-CTGAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGGAGCCTCG
* *
35873908 GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** *
35873950 GG-ACCATCGG-TACCTAGGCCCCTGGTCGTGCGAAAGCCTCT
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
35873991 GGCACCATTGGC-ACCTAGGCCCTTGCTC-TGCGAGAGCCT-G
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
35874031 GGACACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCCTCG
1 GG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *** *
35874075 GGCACCATCGGC-ACCTTGATGCTTGGAT-GTGCGGGAGCCTCG
1 GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCG
* *
35874117 GACACCATAGGCAACCTAGG
1 GGCACCATCGGCAACCTAGG
35874137 ACGTTGGATG
Statistics
Matches: 2158, Mismatches: 265, Indels: 102
0.85 0.10 0.04
Matches are distributed among these distances:
40 2 0.00
41 235 0.11
42 986 0.46
43 921 0.43
44 14 0.01
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (43 bp):
GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
Found at i:35871783 original size:85 final size:86
Alignment explanation
Indices: 35871620--35874136 Score: 2931
Period size: 85 Copynumber: 29.7 Consensus size: 86
35871610 GGGCACCATC
* * * **
35871620 GGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGTTAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35871685 CCTGGTCGTACGGGAG-CTCG
66 CCTGGTCGTGCGGGAGCCTCG
* * *
35871705 GACACCATCGGCAACCTGGGCCCCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGTAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35871769 CCTGGTCGTGACGGGAGCCTCC
66 CCTGGTCGTG-CGGGAGCCTCG
* * * * *
35871791 GACACCATC-GAAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTGGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
35871854 CCTGGTCGTGCGGGAGCCTCG
66 CCTGGTCGTGCGGGAGCCTCG
* * *
35871875 AG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAAGCCTTGGGCACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
35871939 CCTGGTCGTGCGGGAGCCTCG
66 CCTGGTCGTGCGGGAGCCTCG
* * * * *
35871960 GGCACCAACGGCACCCTAGGCCCCTGGTCGTCCGAGAGCCTCGGGCACCATCGGC-ACCTGGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
35872024 CTTGGTCGTGCGAGAGCCTCG
66 CCTGGTCGTGCGGGAGCCTCG
* * **
35872045 GG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
35872107 CTTGGAT-GTGCCGGAGCCTCG
66 CCTGG-TCGTGCGGGAGCCTCG
* * * * * * * * *
35872128 GGCACTATCGGC-ACCTAGGCCCTTGGTCGGGCGAGAGACT-GGGCAGCATCAGAAACCCAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872191 CTTGGTCGTGCGGGAGCCTCG
66 CCTGGTCGTGCGGGAGCCTCG
* ** * * *
35872212 GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCCGGAGCCTCGGGCACTATCGGC-ACCTAGGC
1 GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * * *
35872274 CCTTGGTCGGGCGAGAGACT-G
65 CCCTGGTCGTGCGGGAGCCTCG
* * * * * * **
35872295 GGCAGCATCAGAAACCCAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTG
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
35872359 CTTGGAT-GTGCCGGAGCCTCG
66 CCTGG-TCGTGCGGGAGCCTCG
* * * * * * * *
35872380 GGCACTATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGACT-GGGCAGCATCAGAAACCCAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872443 CTTGGTCGTGCGGGAGCCTCG
66 CCTGGTCGTGCGGGAGCCTCG
* * *
35872464 GGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872529 CCTGGTCGTGCGGGAGCCTCA
66 CCTGGTCGTGCGGGAGCCTCG
* ** * *
35872550 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872614 CCTGGTCGTGCGGGAGCCTCA
66 CCTGGTCGTGCGGGAGCCTCG
* ** * *
35872635 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872699 CCTGGTCGTGCGGGAGCCTCA
66 CCTGGTCGTGCGGGAGCCTCG
* ** * *
35872720 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872784 CCTGGTCGTGCGGGAGCCTCA
66 CCTGGTCGTGCGGGAGCCTCG
* ** * *
35872805 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872869 CCTGGTCGTGCGGGAGCCTCA
66 CCTGGTCGTGCGGGAGCCTCG
* ** * *
35872890 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35872954 CCTGGTCGTGCGGGAGCCTCA
66 CCTGGTCGTGCGGGAGCCTCG
* ** * *
35872975 GACACCATCGTTAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
35873039 CCTGGTCGTGCGGGAGCCTCG
66 CCTGGTCGTGCGGGAGCCTCG
* * * * *
35873060 GGCACCACCGGCATCCTAGGCCCCTGGTCGT-CTGAGAGCCTCGGGCACCGTTGGC-ACCTAGGC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGGAGCCTCGGGCACCATCGGCAACCTAGGC
* *
35873123 CCTTGGTCGTGCGAGAGCCTCG
65 CCCTGGTCGTGCGGGAGCCTCG
* **
35873145 GG-ACCATCGGC-ACCTAGGCCCCTGGTCATGCGAAAGCCTCGGGCACCATCGGC-ACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
35873207 CTTGGTCGTACGAGAGCCT-G
66 CCTGGTCGTGCGGGAGCCTCG
* * * * * *
35873227 GGACACCATCGGCAACCTAGACCCCTGATCGTACGGGAGCCTCAGACACCATC-GAAACCTAGGC
1 GG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
*
35873291 CCCTGGTCGTACGGGAG-CTCG
65 CCCTGGTCGTGCGGGAGCCTCG
* *
35873312 GACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGCAGCCTCGGGCACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
35873377 CCTGGTCGTGCGGGAGCCTCG
66 CCTGGTCGTGCGGGAGCCTCG
* * *
35873398 GGCACCATCGGC-ACCTTAGGCCCCTGGTCGTCCGAGAGCCTCGGGCACCATTGGC-ACCTAGGC
1 GGCACCATCGGCAACC-TAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
*** **
35873461 TATTGGTCGTGCAAGAGCCTCG
65 CCCTGGTCGTGCGGGAGCCTCG
* * *
35873483 GG-ACCATTGGC-ACCAAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
35873545 CTTGGTCGTGCGAGAGCCT-G
66 CCTGGTCGTGCGGGAGCCTCG
* * * * *
35873565 GGCACCATCGGAAACCCAGGCACTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAATCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
35873630 CTTGGTCGTGCGAGAGCCTTG
66 CCTGGTCGTGCGGGAGCCTCG
* * *
35873651 GGCACCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
35873716 CCTGGTCGTACGGGAG-CTCA
66 CCTGGTCGTGCGGGAGCCTCG
* *
35873736 GACACCATCGGGCAACCTAGGCCCCTGGTCTTGCGGGAGCCTCGGG-ACCATCGGCAACCTAGGC
1 GGCACCATC-GGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
*
35873800 CCCTGGTCCTGCGGGAGCCTCG
65 CCCTGGTCGTGCGGGAGCCTCG
* *
35873822 GGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
35873887 CCTGGTCGT-CTGAGAGCCTCG
66 CCTGGTCGTGC-GGGAGCCTCG
* * *
35873908 GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGG-TACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
** *
35873970 CCTGGTCGTGCGAAAGCCTCT
66 CCTGGTCGTGCGGGAGCCTCG
* * * * *
35873991 GGCACCATTGGC-ACCTAGGCCCTTGCTC-TGCGAGAGCCT-GGGACACCATCGGTAACCTAGGC
1 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG-CACCATCGGCAACCTAGGC
* *
35874053 CCTTGGTCGTACGGGAGCCTCG
65 CCCTGGTCGTGCGGGAGCCTCG
* *** * * *
35874075 GGCACCATCGGC-ACCTTGATGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
35874137 ACGTTGGATG
Statistics
Matches: 2152, Mismatches: 234, Indels: 92
0.87 0.09 0.04
Matches are distributed among these distances:
81 3 0.00
82 17 0.01
83 289 0.13
84 469 0.22
85 1022 0.47
86 352 0.16
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (86 bp):
GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
CCTGGTCGTGCGGGAGCCTCG
Found at i:35874468 original size:70 final size:70
Alignment explanation
Indices: 35874355--35874492 Score: 249
Period size: 70 Copynumber: 2.0 Consensus size: 70
35874345 AGGGGTCGGA
* *
35874355 TAGTCCCGCAATGACTCACCAACGGTGTTGGGTAGATCGCCGGCGCTAGTGGCCGGGGTGATTAT
1 TAGTCCCGCAATGACTCACCAACGGTGGTGGGTAGATCGCCGGCGCTAGTGGCCGGGGTGATGAT
35874420 TTTTC
66 TTTTC
*
35874425 TAGTCCCGCAATGACTCACCAACGGTGGTGGGTCGATCGCCGGCGCTAGTGGCCGGGGTGATGAT
1 TAGTCCCGCAATGACTCACCAACGGTGGTGGGTAGATCGCCGGCGCTAGTGGCCGGGGTGATGAT
35874490 TTT
66 TTT
35874493 CCGGCCGATC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25
Consensus pattern (70 bp):
TAGTCCCGCAATGACTCACCAACGGTGGTGGGTAGATCGCCGGCGCTAGTGGCCGGGGTGATGAT
TTTTC
Found at i:35875652 original size:21 final size:22
Alignment explanation
Indices: 35875616--35875659 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
35875606 GCAAAGGAAG
35875616 TCGGCAAAATGGATCCGTAACC
1 TCGGCAAAATGGATCCGTAACC
*
35875638 TCGGGAAAA-GGATCCGTAACC
1 TCGGCAAAATGGATCCGTAACC
35875659 T
1 T
35875660 TGGTGCATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (22 bp):
TCGGCAAAATGGATCCGTAACC
Found at i:35876413 original size:42 final size:41
Alignment explanation
Indices: 35876281--35877467 Score: 879
Period size: 42 Copynumber: 28.2 Consensus size: 41
35876271 AGTGGTGCAA
* * * * * *
35876281 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAG
1 GAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TGTGCGG
* *
35876324 GAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGT-GTGCGG
* ** *
35876367 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTGCGG
*
35876409 GAGCCTCGGGCACTATCGGCACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-GTGCGG
* ** *
35876451 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTGCGG
*
35876493 GAGCCTCGGGCACTATCGGCACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-GTGCGG
* ** *
35876535 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTGCGG
*
35876577 GAGCCTCGGGCACTATCGGCACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-GTGCGG
* ** *
35876619 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTGCGG
*
35876661 GAG-CTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGT-GTGCGG
* * *
35876703 GAGCCTCGGGCACCATCGGCAATCTAGGCCCTTTGTCGTGCGA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT-GTGCGG
*
35876746 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT-GTGCGG
* * * * *
35876789 GAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTCGTACGG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-GTGCGG
* * * * * *
35876831 GAG-GTCGGACATCATCGGCAACCTAGACCCCTGGTCGTTCGG
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT-GTGCGG
*** * * *
35876873 GAGCCTCGGG-ACCATCGGCA---A-ANTC-AGATGTGCAG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTGTGCGG
* * * * * ** *
35876908 GAGCCTCGAGCAGCATCGGCAACTTGGAGCCGCGGATGGGCGG
1 GAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TGTGCGG
* * * * ** *
35876951 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTTCAGATGTGCGG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTT--GGTGTGCGG
* ** * * * *
35876994 GAGTCTCGGATACCATCGGTAAACTAGGCCATTGGTTGTGCGA
1 GAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGG-TGTGCGG
* * * ** * *
35877037 GAGCCTTGGGCACCATCAGCACCTTGGTGCTTGGATGCGCGA
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTGCGG
* * * ** *
35877079 GAACCTCGGGGACCATCGGCACCTTGGTGCTTGGATGTGCGA
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTGCGG
* *
35877121 GAGCCTTAGTGG---CATCGGCAACCTAGGCCCTTGGTCGTGCGA
1 GAGCC-TCG-GGCACCATCGGC-ACCTAGGCCCTTGGT-GTGCGG
*
35877163 GAGCCTCGGG-ACCATCGGAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-GTGCGG
* ** *
35877204 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTACGG
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTGCGG
* * * * *
35877246 GAGCCTCGGACACCATCGGTAACCTAGGGCCTTGGTCGTACCG
1 GAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGT-GTGCGG
* *
35877289 GAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGT-GTGCGG
* * * *
35877332 GAGCCTCGGGTACCATCGGCACCTTGGTGCCTCGGATGTGCGG
1 GAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TGTGCGG
* * * **
35877375 GAGCCTCGAGCATCATTC-GCACCTTGGTGCTTGGATGTGCGG
1 GAGCCTCGGGCACCA-TCGGCACCTAGGCCCTTGG-TGTGCGG
* * * *
35877417 GAGCCTCGGACACCATAGGCAACCTAGGACATTGGATGTGCGG
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TGTGCGG
*
35877460 GTGCCTCG
1 GAGCCTCG
35877468 AGCAGCAGGG
Statistics
Matches: 932, Mismatches: 170, Indels: 84
0.79 0.14 0.07
Matches are distributed among these distances:
35 13 0.01
36 11 0.01
37 2 0.00
38 1 0.00
40 2 0.00
41 75 0.08
42 466 0.50
43 343 0.37
44 19 0.02
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (41 bp):
GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTGTGCGG
Found at i:35876453 original size:84 final size:84
Alignment explanation
Indices: 35876281--35877467 Score: 1083
Period size: 84 Copynumber: 14.1 Consensus size: 84
35876271 AGTGGTGCAA
* * * * * *
35876281 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAGGAGCCTCGGACACCATCGGTAA
1 GAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCCGGAGCCTCGGGCACCATCGG-CA
35876346 CCTAGGCCCTTGGTCGTGCGG
64 CCTAGGCCCTTGGTCGTGCGG
*
35876367 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACTATCGGCACC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGGCACC
35876432 TAGGCCCTTGGTCGTGCGG
66 TAGGCCCTTGGTCGTGCGG
*
35876451 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACTATCGGCACC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGGCACC
35876516 TAGGCCCTTGGTCGTGCGG
66 TAGGCCCTTGGTCGTGCGG
*
35876535 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACTATCGGCACC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGGCACC
35876600 TAGGCCCTTGGTCGTGCGG
66 TAGGCCCTTGGTCGTGCGG
*
35876619 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAG-CTCGGGCACCATCGGAAAC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGG-CAC
35876683 CTAGGCCCTTGGTCGTGCGG
65 CTAGGCCCTTGGTCGTGCGG
* * ** *
35876703 GAGCCTCGGGCACCATCGGCAATCTAGGCCCTTTG-TCGTG-CGAGAGCCTCGGGCACCATCGGC
1 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCCG-GAGCCTCGGGCACCATCGGC
*
35876766 AACCTAGGCCCCTGGTCGTGCGG
63 -ACCTAGGCCCTTGGTCGTGCGG
* * * * ** * * * * * *
35876789 GAGCCTCAGACACCATCGGAACCTAGGCCCCTGG-TCGTACGGGAG-GTCGGACATCATCGGCAA
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCCGGAGCCTCGGGCACCATCGGC-A
* * *
35876852 CCTAGACCCCTGGTCGTTCGG
64 CCTAGGCCCTTGGTCGTGCGG
*** * * * * *
35876873 GAGCCTCGGG-ACCATCGGCA---AANT-C--AGATGTGCAGGAGCCTCGAGCAGCATCGGCAAC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGGCACC
* * ** *
35876931 TTGGAGCCGCGGAT-GGGCGG
66 TAGG-CCCTTGG-TCGTGCGG
* * * * * * ** *
35876951 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTTCAGATGTGCGGGAGTCTCGGATACCATCGGTAA
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTT-GGATGTGCCGGAGCCTCGGGCACCATCGG-CA
* * * *
35877016 ACTAGGCCATTGGTTGTGCGA
64 CCTAGGCCCTTGGTCGTGCGG
* * * * *
35877037 GAGCCTTGGGCACCATCAGCACCTTGGTGCTTGGATGCG-CGAGAACCTCGGGGACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCG-GAGCCTCGGGCACCATCGGCAC
* ** *
35877101 CTTGGTGCTTGGAT-GTGCGA
65 CTAGGCCCTTGG-TCGTGCGG
* * **
35877121 GAGCCTTAGTGG---CATCGGCAACCTAGGCCCTTGG-TCGTG-CGAGAGCCTCGGG-ACCATCG
1 GAGCC-TCG-GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCCG-GAGCCTCGGGCACCATCG
*
35877180 GAACCTAGGCCCTTGGTCGTGCGG
61 GCACCTAGGCCCTTGGTCGTGCGG
* * * *
35877204 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGGACACCATCGGTAAC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGG-CAC
* * *
35877269 CTAGGGCCTTGGTCGTACCG
65 CTAGGCCCTTGGTCGTGCGG
* * * ** * *
35877289 GAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGTACCATCGGCA
1 GAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCCGGAGCCTCGGGCACCATCGGCA
* * *
35877353 CCTTGGTGCCTCGGAT-GTGCGG
64 CCTAGG-CCCTTGG-TCGTGCGG
* * * * *
35877375 GAGCCTCGAGCATCATTC-GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATAGGCAA
1 GAGCCTCGGGCACCA-TCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGGC-A
* *
35877439 CCTAGGACATTGGAT-GTGCGG
64 CCTAGGCCCTTGG-TCGTGCGG
*
35877460 GTGCCTCG
1 GAGCCTCG
35877468 AGCAGCAGGG
Statistics
Matches: 921, Mismatches: 138, Indels: 85
0.81 0.12 0.07
Matches are distributed among these distances:
77 12 0.01
78 30 0.03
79 10 0.01
80 1 0.00
81 2 0.00
82 4 0.00
83 82 0.09
84 385 0.42
85 183 0.20
86 203 0.22
87 9 0.01
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (84 bp):
GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCCGGAGCCTCGGGCACCATCGGCACC
TAGGCCCTTGGTCGTGCGG
Found at i:35877857 original size:33 final size:33
Alignment explanation
Indices: 35877820--35877885 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
35877810 TGGGGTGGCT
35877820 TATGCATTGCTATGGGCTCGAGCTCGGCTTGCC
1 TATGCATTGCTATGGGCTCGAGCTCGGCTTGCC
*
35877853 TATGCATTGCTATGGGCTCGAGCTTGGCTTGCC
1 TATGCATTGCTATGGGCTCGAGCTCGGCTTGCC
35877886 CATTCTCCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.12, C:0.26, G:0.30, T:0.32
Consensus pattern (33 bp):
TATGCATTGCTATGGGCTCGAGCTCGGCTTGCC
Found at i:35895198 original size:24 final size:24
Alignment explanation
Indices: 35895147--35895217 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
35895137 CCGGTTAGGT
* * * *
35895147 TCCCGGCGGTACTCCGATGATCCG
1 TCCCGGCGGTGCTCCGGTGAACCA
*
35895171 TCCCGGCGGTGCTCCGGCGAACCA
1 TCCCGGCGGTGCTCCGGTGAACCA
* *
35895195 TCCCGTCGGTGCTCTGGTGAACC
1 TCCCGGCGGTGCTCCGGTGAACC
35895218 GTTCCGGTAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.11, C:0.38, G:0.31, T:0.20
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGTGAACCA
Found at i:35895381 original size:42 final size:41
Alignment explanation
Indices: 35895333--35895608 Score: 229
Period size: 42 Copynumber: 6.5 Consensus size: 41
35895323 TGGTCATGCA
35895333 GGAGCCTCGGGAGCCATCGGCACCTCGGTGCTTCGATGTGCG
1 GGAGCCTCGGGAGCCATCGGCACCTCGGTGCTT-GATGTGCG
* *
35895375 GGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCT
1 GGAGCCTCGGGAGCCATCGGCACCTCGGTGCTT-GATGTGCG
* * ** *
35895417 GGAGCCTCGGGCGCCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGAGCCATCGGC-ACCTCGGTGCTTGAT-GTGCG
*
35895460 GGAGCCTCGGGCA-CCATCGGCACCTCAGTGCTATGATGTGCG
1 GGAGCCTCGGG-AGCCATCGGCACCTCGGTGCT-TGATGTGCG
* * * ** *
35895502 GGAGCCTC-GGA-CACTGTCGGAAACCTAGGCCCTTGGTTGTGCG
1 GGAGCCTCGGGAGC-C-ATCGG-CACCTCGGTGCTT-GATGTGCG
* *
35895545 GGAGCCTCGAGCA-CCATCGGCACCTTGGTGCTTGTATGTGCG
1 GGAGCCTCG-GGAGCCATCGGCACCTCGGTGCTTG-ATGTGCG
* * *
35895587 AGAACCTCGCGCA-CCATCGGCA
1 GGAGCCTCG-GGAGCCATCGGCA
35895609 ACCTAGGCCC
Statistics
Matches: 193, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
40 2 0.01
41 4 0.02
42 122 0.63
43 61 0.32
44 1 0.01
45 3 0.02
ACGTcount: A:0.14, C:0.32, G:0.34, T:0.19
Consensus pattern (41 bp):
GGAGCCTCGGGAGCCATCGGCACCTCGGTGCTTGATGTGCG
Found at i:35895394 original size:85 final size:84
Alignment explanation
Indices: 35895235--35895396 Score: 209
Period size: 85 Copynumber: 1.9 Consensus size: 84
35895225 TACCATAGGC
* * * *
35895235 CCTTTGTCATGCGGGAGCCTCGGGCACCATTGGCACCTTGGTGCTAGGATGTGCAGGAGCCCCGG
1 CCTTTGTCATGCAGGAGCCTCGGGCACCATCGGCACCTCGGTGCTACGATGTGCAGGAGCCCCGG
*
35895300 ACACTATCGGCAAACTAAG
66 ACACCATCGGCAAACTAAG
* * *
35895319 CCTTTGGTCATGCAGGAGCCTCGGG-AGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGCCTC
1 CCTTT-GTCATGCAGGAGCCTCGGGCA-CCATCGGCACCTCGGTGCTACGATGTGCAGGAGCCCC
* *
35895383 GGGCGCCATCGGCA
64 GGACACCATCGGCA
35895397 CCTCGGTGCT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
84 6 0.09
85 60 0.91
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (84 bp):
CCTTTGTCATGCAGGAGCCTCGGGCACCATCGGCACCTCGGTGCTACGATGTGCAGGAGCCCCGG
ACACCATCGGCAAACTAAG
Found at i:35895462 original size:85 final size:83
Alignment explanation
Indices: 35895370--35896448 Score: 783
Period size: 85 Copynumber: 12.7 Consensus size: 83
35895360 GTGCTTCGAT
* * *
35895370 GTGCGGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCTGGAGCCTCGGGCGCCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-GATGTGC-GGAGCCTCGGGCACCATC
35895435 GGCAACCTAGGCCCTTGGTC
64 GGCAACCTAGGCCCTTGGTC
* **
35895455 GTGCGGGAGCCTCGGGCACCATCGGCACCTCA-GTGCTATGATGTGCGGGAGCCTCGGACACTGT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCT-TGATGTGC-GGAGCCTCGGGCACCAT
* *
35895519 CGGAAACCTAGGCCCTTGGTT
63 CGGCAACCTAGGCCCTTGGTC
* * * *
35895540 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGTATGTGCGAGAACCTCGCGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG-ATGTGCG-GAGCCTCGGGCACCATC
*
35895605 GGCAACCTAGGCCCCTGGTC
64 GGCAACCTAGGCCCTTGGTC
* * * * * * ** *
35895625 GTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGG-AGCCTCGGGCACCAT
**
35895690 CGGCAAAATAGGCCCTTGGTC
63 CGGCAACCTAGGCCCTTGGTC
* * * * * *
35895711 GTGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCAGGAGCGTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGC-GGAGCCTCGGGCACCATC
*
35895776 GGCAAACTAGGCCCTTGGTC
64 GGCAACCTAGGCCCTTGGTC
* * * **
35895796 GTGCGGGAGCCTCGGGCACCATCGGAACCTCA-GTGCTATGATGTGCGGGAGCCTCAGACACTGT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCT-TGATGTGC-GGAGCCTCGGGCACCAT
*
35895860 CGGTAACCTAGGCCCTTGGTC
63 CGGCAACCTAGGCCCTTGGTC
* * ** * * *
35895881 GTGCGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAAAGGCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTGAT-GTGCG-GAGCCTCGGGCACCAT
* *
35895946 CGGCAATCTAAGCCCTTGGTC
63 CGGCAACCTAGGCCCTTGGTC
** ** * *
35895967 GTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCTGGAGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGC-GGAGCCTCGGGCACCAT
* ** *
35896032 CGGC-CCCTAGGTGCTGGGAT-
63 CGGCAACCTAGGCCCTTGG-TC
* * * *
35896052 GTGCGGGAGCCTCGGACACCATCGGCAAACTA-GTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGT-GCTTGAT-GTGC-GGAGCCTCGGGCACCA
* ** *
35896116 TCGGC-ACCTCGGTGCTATGAT-
62 TCGGCAACCTAGGCCCT-TGGTC
* ** ** ** * * *
35896137 GGGCGGGAGCCTCGGATACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGC-GGAGCCTCGGGCACCAT
* *
35896202 AGAC-ACCTTGAGG--CTTGGAT-
63 CGGCAACC-T-AGGCCCTTGG-TC
* * * * ** *
35896222 GTGTGGGAACCTCGGGCACCATCTGCAACCTAAGCCCTTGATCGTGCGAGAGGCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCG-GAGCCTCGGGCACCAT
* * *
35896287 CGCCAAACTAAGCCCTTGGTC
63 CGGCAACCTAGGCCCTTGGTC
* ** ** * * *
35896308 GTGCGGGAGCCTCGAGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGC-GGAGCCTCGGGCACCAT
35896373 CGG----C-A---CCTTGGTC
63 CGGCAACCTAGGCCCTTGGTC
* *
35896386 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT-GCTTG-ATGTGC-GGAGCCTCGGGCACC
35896449 CACGGAACCT
Statistics
Matches: 812, Mismatches: 150, Indels: 71
0.79 0.15 0.07
Matches are distributed among these distances:
77 4 0.00
78 54 0.07
79 1 0.00
81 1 0.00
82 1 0.00
84 9 0.01
85 504 0.62
86 234 0.29
87 4 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.18
Consensus pattern (83 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGATGTGCGGAGCCTCGGGCACCATCGG
CAACCTAGGCCCTTGGTC
Found at i:35895478 original size:43 final size:43
Alignment explanation
Indices: 35895230--35896412 Score: 951
Period size: 43 Copynumber: 27.9 Consensus size: 43
35895220 TCCGGTACCA
* * *
35895230 TAGGCCCTTTGTCATGCGGGAGCCTCGGGCACCATTGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * * *
35895272 TTGGTGCTAGGAT-GTGCAGGAGCCCCGGACACTATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
35895315 TAAGCCTTTGGTCATGCAGGAGCCTCGGG-AGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACC
* ** * *
35895357 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * *
35895399 TCGGTGCTTCGAT-GTGCTGGAGCCTCGGGCGCCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
35895442 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * ** *
35895484 TCAGTG--CTATGAT-GTGCGGGAGCCTCGGACACTGTCGGAAACC
1 T-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
35895527 TAGGCCCTTGGTTGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
35895569 TTGGTGCTT-GTATGTGCGAGAACCTCGCGCACCATCGGCAACC
1 TAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * *
35895612 TAGGCCCCTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
35895655 TAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
35895698 TAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
35895740 TAGGTGCTGGGAT-GTGCAGGAGCGTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
35895783 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * ** *
35895825 TCAGTG--CTATGAT-GTGCGGGAGCCTCAGACACTGTCGGTAACC
1 T-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
35895868 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGTAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * *
35895911 TAGGCCCTTGGTCGTGCGAAAGGCTCGGGCACCATCGGCAATC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
35895954 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
35895997 TAGGCCCTTGGTCGTGCTGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
35896039 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
35896082 TAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * ** **
35896124 TCGGTGCTATGAT-GGGCGGGAGCCTCGGATACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
35896167 TAGGCCCTTGGTCGTGCGGGAGCCTTGAGCACCATAGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
35896209 TTGAGG--CTTGGAT-GTGTGGGAACCTCGGGCACCATCTGCAACC
1 -T-AGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * *
35896252 TAAGCCCTTGATCGTGCGAGAGGCTCGGGCACCATCGCCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
35896295 TAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
35896338 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGG----C
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
35896377 -A---CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
35896413 CCTTGGTGGC
Statistics
Matches: 908, Mismatches: 190, Indels: 91
0.76 0.16 0.08
Matches are distributed among these distances:
35 31 0.03
38 1 0.00
41 6 0.01
42 322 0.35
43 541 0.60
44 7 0.01
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:35895914 original size:299 final size:297
Alignment explanation
Indices: 35895582--35896333 Score: 1084
Period size: 299 Copynumber: 2.5 Consensus size: 297
35895572 GTGCTTGTAT
* * * * *
35895582 GTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGGCTCGGGCACTAT
1 GTGCGGGAGCCTCGAGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCAT
35895647 CGACAAACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
65 CG-CAAACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
*
35895712 TGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCAGGAGCGTCGGACACCATCG
129 TGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCAGGAGCCTCGGACACCATCG
*
35895777 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTCAGTGCTATGATGTGC
194 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTCAGTGCTATGATGGGC
*
35895842 GGGAGCCTCAGACACTGTCGGTAACCTAGGCCCTTGGTC
259 GGGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTC
*
35895881 GTGCGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAAAGGCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCAT
* *
35895946 CGGCAATCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
65 C-GCAAACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
* *
35896011 TGCTGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
129 TGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCAGGAGCCTCGGACACCATCG
* * *
35896076 GCAAACTAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGGGC
194 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTCAGTGCTATGATGGGC
* *
35896141 GGGAGCCTCGGATACTGTCGGCAACCTAGGCCCTTGGTC
259 GGGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTC
* * * * **
35896180 GTGCGGGAGCCTTGAGCACCAT-AGACACCTTGAGG--CTTGGAT-GTGTGGGAACCTCGGGCAC
1 GTGCGGGAGCCTCGAGCACCATCGGA-ACC-T-AGGCCCTTGG-TCGTGCGAGAGGCTCGGGCAC
* * * * * *
35896241 CATCTGCAACCTAAGCCCTTGATCGTGC-GAGAGGCTCGGGCACCATCGCCAAACTAAGCCCTTG
62 CATC-GCAAACTAAGCCCTTGGTCGTGCGGA-AGCCTCGGGCACCATCGGCAAAATAGGCCCTTG
*
35896305 GTCGTGCGGGAGCCTCGAG-CACCATCGGC
125 GTCGTGCAGGAGCCTCG-GCCACCATCGGC
35896334 AAAATAGGCC
Statistics
Matches: 411, Mismatches: 35, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
297 2 0.00
298 103 0.25
299 302 0.73
300 4 0.01
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (297 bp):
GTGCGGGAGCCTCGAGCACCATCGGAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATC
GCAAACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTG
CAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCAGGAGCCTCGGACACCATCGGC
AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTCAGTGCTATGATGGGCGG
GAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTC
Found at i:35896145 original size:256 final size:254
Alignment explanation
Indices: 35895230--35896412 Score: 912
Period size: 256 Copynumber: 4.7 Consensus size: 254
35895220 TCCGGTACCA
* * * * * ** * *
35895230 TAGGCCCTTTGTCATGCGGGAGCCTCGGGCACCATTGGCACCTTGGTGCTAGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-TGTGCGGGAGC
* * * * *
35895295 CCCGGACACTATCGGCAAACTAAG-CCTTTGGTCATGCAGGAGCCTCGGG-AGCCATCGGCACCT
65 CTCGGACACCATCGGCAAACT-AGTCCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCACCT
* * * * ** *
35895358 CGGTGCTTCGAT-GTGCGGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCTGG-
128 AGGTCCTT-GATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGC-GGA
* *
35895419 AGCCTCGGGCGCCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
190 AGCCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** *
35895484 TCAGTG--CTATGAT-GTGCGGGAGCCTCGGACACTGTCGGAAACCTAGGCCCTTGGTTGTGCGG
1 T-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGG-CACCTAGGCCCTTGG-TGTGCGG
* * * * * * *
35895546 GAGCCTC-GAGCACCATCGGC-ACCTTGGT-GCTT-GTATGTGCGAGAACCTCGCGCACCATCGG
61 GAGCCTCGGA-CACCATCGGCAAAC-TAGTCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGG
* * * * * * * * *
35895607 CAACCTAGGCCCCTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGC
123 C-ACCTAGGTCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
** * * *
35895672 GGAAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGC
187 GGAAGCCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
35895737 CCC
252 ACC
** * * * *
35895740 TAGGTGCTGGGAT-GTGCAGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT-GTGCGGGA
* * * * * * ** *
35895804 GCCTCGGGCACCATCGG-AACCTCAGT-GCTATGAT-GTGCGGGAGCCTCAGACACTGTCGGTAA
63 GCCTCGGACACCATCGGCAAACT-AGTCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CA
* * * * *
35895866 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAA
125 CCTAGGTCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGA
* * *
35895931 AGGCTCGGGCACCATCGGCAATCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
190 AGCCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
*
35895996 A
254 C
* * * ** *
35895997 TAGGCCCTTGGTCGTGCTGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-TGTGCGGGAGC
*
35896062 CTCGGACACCATCGGCAAACTAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCG
65 CTCGGACACCATCGGCAAACTAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAG
* * ** ** *
35896127 GTGCTATGAT-GGGCGGGAGCCTCGGATACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
130 GTCCT-TGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCC
* * * * * * * * *
35896191 TTGAGCACCATAGAC-ACCTTGAG-GCTTGGAT-GTGTGGGAACCTCGGGCACCATCTGCAACC
194 TCGGGCACCATCGGCAACC-TAAGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* * * * * * * *
35896252 TAAGCCCTTGATCGTGCGAGAGGCTCGGGCACCATCGCCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAG
* * * *
35896317 CCTC-GAGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGG---C-
64 CCTCGGA-CACCATCGGCAAACTAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
*
35896377 A---CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
128 AGGTCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCA
35896413 CCTTGGTGGC
Statistics
Matches: 734, Mismatches: 157, Indels: 81
0.76 0.16 0.08
Matches are distributed among these distances:
248 3 0.00
249 24 0.03
253 3 0.00
254 52 0.07
255 142 0.19
256 445 0.61
257 64 0.09
258 1 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (254 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTGTGCGGGAGCC
TCGGACACCATCGGCAAACTAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG
TCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTC
GGGCACCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
Found at i:35896244 original size:170 final size:170
Alignment explanation
Indices: 35895290--35896412 Score: 620
Period size: 171 Copynumber: 6.6 Consensus size: 170
35895280 AGGATGTGCA
* * * * * * * * * *
35895290 GGAGCCCCGGACACTATCGGCAAACTAAGCCTTTGGTCATGCAGGAGCCTCGG-GAGCCATCGGC
1 GGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCA-CCATAGAC
* ** * * ** *
35895354 ACCTCGGTGCTTCGATGTGCGGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCT
65 ACCTAGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AGCCCTT-GGTCGTGC-
* * * * *
35895417 G-GAGCCTCGGGCGCCATCGGCAACCTAGGCCCTTGGTCGTGCG
127 GAGAGGCTCGGGCACCATCGGCAACCTAAGCCCTTGATCGGGCG
* ** * * ** *
35895460 GGAGCCTCGGGCACCATCGGC-ACCTCAGTG--CTATGAT-GTGCGGGAGCCTCGGACACTGTCG
1 GGAGCCTCGGACACCATCGGCAAAAT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGCCACCAT-A
* ** * * * * ** *
35895521 GAAACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTT-GTATGT
62 GACACCTAGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGCCCTTGGT-CGT
** * * * * *
35895584 GCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
125 GCGAGAGGCTCGGGCACCATCGGCAACCTAAGCCCTTGATCGGGCG
* * * * * * * * * * *
35895630 AGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATAGAC-
** ** * * * * ** *
35895695 AAATAGGCCCTTGG-TCGTGCAGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGC
65 ACCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GCCCTTGG-TCGTGC
* * * * *
35895757 -AG-GAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCG
127 GAGAG-GC-TCGGGCACCATCGGCAACCTAAGCCCTTGATCGGGCG
* ** * * * ** *
35895801 GGAGCCTCGGGCACCATCGG-AACCTCAGTG--CTATGAT-GTGCGGGAGCCTCAGACACTGTCG
1 GGAGCCTCGGACACCATCGGCAAAAT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGCCACCAT-A
** * * *
35895862 GTA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCG
62 G-ACACCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GCCCTTGGTCG
* * * *
35895925 TGCGAAAGGCTCGGGCACCATCGGCAATCTAAGCCCTTGGTCGTGCG
124 TGCGAGAGGCTCGGGCACCATCGGCAACCTAAGCCCTTGATCGGGCG
* * * * *
35895972 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCTGGAGCCTCGGCCACCATCGGCC
1 GGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATAGACA
* * *
35896037 CCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGTCCCTTGGTCGTGCGGG
66 CCTAGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-CCCTTGGTCGTGCGAG
* ** **
35896102 AGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GGGCG
130 AGGCTCGGGCACCATCGGCAACCTAAGCCCT-TGATCGGGCG
* ** ** *
35896142 GGAGCCTCGGATACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGAG-CACCATAGAC
1 GGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCG-GCCACCATAGAC
* * * * * *
35896206 ACCTTGAG-GCTTGGATGTGTGGGAACCTCGGGCACCATCTGCAACCTAAGCCCTTGATCGTGCG
65 ACCTAG-GTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AGCCCTTGGTCGTGCG
* * * *
35896270 AGAGGCTCGGGCACCATCGCCAAACTAAGCCCTTGGTCGTGCG
128 AGAGGCTCGGGCACCATCGGCAACCTAAGCCCTTGATCGGGCG
* * *
35896313 GGAGCCTC-GAGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC
1 GGAGCCTCGGA-CACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATAGAC
*
35896377 ACCTTGGT-C------GTGCGGGAGCCTCGGGCACCATCGGCA
65 ACCTAGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCA
35896413 CCTTGGTGGC
Statistics
Matches: 756, Mismatches: 152, Indels: 96
0.75 0.15 0.10
Matches are distributed among these distances:
164 24 0.03
168 1 0.00
169 21 0.03
170 338 0.45
171 342 0.45
172 28 0.04
173 2 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.18
Consensus pattern (170 bp):
GGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATAGACA
CCTAGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGCCCTTGGTCGTGCGAGA
GGCTCGGGCACCATCGGCAACCTAAGCCCTTGATCGGGCG
Found at i:35896357 original size:299 final size:295
Alignment explanation
Indices: 35895582--35896443 Score: 1070
Period size: 299 Copynumber: 2.9 Consensus size: 295
35895572 GTGCTTGTAT
* * * * * * * * *
35895582 GTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGGCTCGGGCACTAT
1 GTGCGGGAGCCTCGAGCACCATCAGTAACCTAGG-CCTTGGTCGTGCGAAAGCCTCGGGCACCAT
35895647 CGACAAACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
65 CG-CAAACTAAGCCCTTGGTCGTGCGG-AGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
* *
35895712 TGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCAGGAGCGTCGGACACCATCG
128 TGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
* *
35895777 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTCAGTGCTATGATGTGC
193 GCAAACTA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGC
* *
35895842 GGGAGCCTCAGACACTGTCGGTAACCTAGGCCCTTGGTC
257 GGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
* *
35895881 GTGCGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAAAGGCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCAGTAACCTAGG-CCTTGGTCGTGCGAAAGCCTCGGGCACCAT
*
35895946 CGGCAATCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
65 C-GCAAACTAAGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCG
*
35896011 TGCTGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
128 TGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
*
35896076 GCAAACTAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGGGC
193 GCAAACTAG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGC
*
35896141 GGGAGCCTCGGATACTGTCGGCAACCTAGGCCCTTGGTC
257 GGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
* * *
35896180 GTGCGGGAGCCTTGAGCACCAT-AG-ACACCTTGAGG-CTTGGAT-GTGTGGGAA-CCTCGGGCA
1 GTGCGGGAGCCTCGAGCACCATCAGTA-ACC-T-AGGCCTTGG-TCGTG-CGAAAGCCTCGGGCA
* * * * * *
35896240 CCATCTGCAACCTAAGCCCTTGATCGTGCGAGAGGCTCGGGCACCATCGCCAAACTAAGCCCTTG
61 CCATC-GCAAACTAAGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGCAAAATAGGCCCTTG
* *** ** * * *
35896305 GTCGTGCGGGAGCCTCGAG-CACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGGGCCTCGGCC
124 GTCGTGCAGGAGCCTCG-GCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGAC
* *
35896368 ACCATCGG----C-A--CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCT-C
186 ACCATCGGCAAACTAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTAT
35896425 GAATGTGCGGGAGCCTCGG
250 G-ATGTGCGGGAGCCTCGG
35896444 GCACCCACGG
Statistics
Matches: 508, Mismatches: 41, Indels: 35
0.87 0.07 0.06
Matches are distributed among these distances:
291 42 0.08
292 19 0.04
294 1 0.00
295 1 0.00
297 2 0.00
298 104 0.20
299 333 0.66
300 6 0.01
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (295 bp):
GTGCGGGAGCCTCGAGCACCATCAGTAACCTAGGCCTTGGTCGTGCGAAAGCCTCGGGCACCATC
GCAAACTAAGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGC
AGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCGGCA
AACTAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGA
GCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
Found at i:35896382 original size:35 final size:35
Alignment explanation
Indices: 35896343--35896419 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
35896333 CAAAATAGGC
*
35896343 CCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGCA
1 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCA
*
35896378 CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCA
35896413 CCTTGGT
1 CCTTGGT
35896420 GGCTCGAATG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.09, C:0.35, G:0.36, T:0.19
Consensus pattern (35 bp):
CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCA
Found at i:35896434 original size:43 final size:43
Alignment explanation
Indices: 35896386--35896478 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
35896376 CACCTTGGTC
* *
35896386 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTTGGTGGCTCGAAT
1 GTGCGGGAGCCTCGGGCACCCA-CGGAACCTTGGTGCCTCGAAT
* *
35896429 GTGCGGGAGCCTCGGGCACCCACGGAACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCACCCACGGAACCTTGGTGCCTCGAAT
35896472 GTGCGGG
1 GTGCGGG
35896479 CTAAAGAAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 42 0.93
44 3 0.07
ACGTcount: A:0.13, C:0.29, G:0.41, T:0.17
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCCACGGAACCTTGGTGCCTCGAAT
Found at i:35897993 original size:263 final size:263
Alignment explanation
Indices: 35897526--35898052 Score: 1000
Period size: 263 Copynumber: 2.0 Consensus size: 263
35897516 CACGAACGAT
35897526 GCTCGTGCTCTGTTATGACCTCTTCGTAGCTCACGGGGAATGTTGAGGGCCATGCAGTGCCGACG
1 GCTCGTGCTCTGTTATGACCTCTTCGTAGCTCACGGGGAATGTTGAGGGCCATGCAGTGCCGACG
*
35897591 TCGCGGAGGAATACTACCTGGTTGATCCTGCTAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA
66 TCGCGGAGGAATACTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA
* *
35897656 TGCATGTGTAAGTATGAACAAATTCAGACTGTGAAATTGCGAATGGCTCATTAAATCATTTATAG
131 TGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAG
35897721 TTTGTTTGATGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTACAACAAAC
196 TTTGTTTGATGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTACAACAAAC
35897786 CCC
261 CCC
*
35897789 GCTCGTGCTCTGTTATGACCTCTTCGTAGCTCACGGGGCATGTTGAGGGCCATGCAGTGCCGACG
1 GCTCGTGCTCTGTTATGACCTCTTCGTAGCTCACGGGGAATGTTGAGGGCCATGCAGTGCCGACG
*
35897854 TCGCGGAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA
66 TCGCGGAGGAATACTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA
35897919 TGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAG
131 TGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAG
*
35897984 TTTGTTTGATGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAAC
196 TTTGTTTGATGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTACAACAAAC
35898049 CCC
261 CCC
35898052 G
1 G
35898053 ACTTCTGGAA
Statistics
Matches: 258, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
263 258 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (263 bp):
GCTCGTGCTCTGTTATGACCTCTTCGTAGCTCACGGGGAATGTTGAGGGCCATGCAGTGCCGACG
TCGCGGAGGAATACTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA
TGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAG
TTTGTTTGATGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTACAACAAAC
CCC
Found at i:35898307 original size:42 final size:42
Alignment explanation
Indices: 35898248--35898333 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
35898238 ATTAGGGTTC
*
35898248 GATTCCGGAAAGGGAGCCTGAGAAACGGCTACCACATCCAAG
1 GATTCCAGAAAGGGAGCCTGAGAAACGGCTACCACATCCAAG
*
35898290 GATTCCAGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG
1 GATTCCAGAAAGGGAGCCTGAGAAACGGCTACCACATCCAAG
35898332 GA
1 GA
35898334 AGGCAGCAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.34, C:0.26, G:0.29, T:0.12
Consensus pattern (42 bp):
GATTCCAGAAAGGGAGCCTGAGAAACGGCTACCACATCCAAG
Found at i:35904268 original size:42 final size:42
Alignment explanation
Indices: 35904161--35904494 Score: 268
Period size: 42 Copynumber: 7.9 Consensus size: 42
35904151 AGCCTCCATG
* * *
35904161 ACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGACACCATCAGT
1 ACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGGT
* * * *
35904204 AACCTTGATGCTTGGATATGTGGGAGCCTCGAGCACCACCGGT
1 -ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGT
* * *
35904247 ACCTTGGTGCATGGATGTGTGGGAGCATCG-GACACCATCGGT
1 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGGT
* * ** * * *
35904289 AAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCTGC
1 -ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGT
* * **
35904331 ACCTCGGTGCTAT-GATGTACGGGAGCCTC-AGACACTGTCGGT
1 ACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCGGT
* ** *
35904373 AACCTAGGCCCTTGG-TCGTGCGGGAGACTCGAGCACCATCGGT
1 -ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGT
*
35904416 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
1 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGT
* * *
35904458 ACCTTGGTGCATGGATGAGCGGGAGCCTTGAGCACCA
1 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCA
35904495 AAGCTAAAGT
Statistics
Matches: 232, Mismatches: 44, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
40 2 0.01
41 12 0.05
42 136 0.59
43 70 0.30
44 12 0.05
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (42 bp):
ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGT
Found at i:35904440 original size:85 final size:83
Alignment explanation
Indices: 35904161--35904456 Score: 301
Period size: 85 Copynumber: 3.5 Consensus size: 83
35904151 AGCCTCCATG
* * * * *** *
35904161 ACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGACACCATCAGTAACCTTGATGCTTGGATATGTG
1 ACCTTGGT-GCTTGGATGTGCGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGG-TGTG-G
*
35904226 GGAGCCTCGAGCACCACCGGT
63 GGAGCCTCGAGCACCATCGGT
* * * * *
35904247 ACCTTGGTGCATGGATGTGTGGGAGCATCGGACACCATCGGTAAACTAGGCCCTTGGTTGTGGGG
1 ACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGG-TGTGGGG
* *
35904312 AGCCTCGGAG-ACCATCTGC
65 AGCCTC-GAGCACCATCGGT
* * **
35904331 ACCTCGGTGCTAT-GATGTACGGGAGCCTCAGACACTGTCGGTAACCTAGGCCCTTGGTCGTGCG
1 ACCTTGGTGCT-TGGATGTGCGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGGT-GTG-G
*
35904395 GGAGACTCGAGCACCATCGGT
63 GGAGCCTCGAGCACCATCGGT
35904416 ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
1 ACCTTGGTGCTTGGATGTGCGGGAGCCTCAGA-CACCATCGG
35904457 CACCTTGGTG
Statistics
Matches: 172, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
83 1 0.01
84 70 0.41
85 93 0.54
86 8 0.05
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (83 bp):
ACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGGTGTGGGGA
GCCTCGAGCACCATCGGT
Found at i:35904763 original size:24 final size:23
Alignment explanation
Indices: 35904704--35904776 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 23
35904694 CCGGTTAGGT
* * *
35904704 TCCCGGCGGTGCTCTGGCGATCCG
1 TCCC-GCGGTGCTCCGGTGAACCG
*
35904728 TCCCAGCTGTGCTCCGGTGAACCG
1 TCCC-GCGGTGCTCCGGTGAACCG
35904752 TCCCGTCGGTGCTCCGGCT-AACCG
1 TCCCG-CGGTGCTCCGG-TGAACCG
35904776 T
1 T
35904777 TCCGGTAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.08, C:0.38, G:0.32, T:0.22
Consensus pattern (23 bp):
TCCCGCGGTGCTCCGGTGAACCG
Found at i:35904944 original size:33 final size:33
Alignment explanation
Indices: 35904897--35904985 Score: 117
Period size: 33 Copynumber: 2.7 Consensus size: 33
35904887 GCAGGAGCCT
*
35904897 CGGGCGCCATCGGCACCTCGGTGCTTCGATGTA
1 CGGGAGCCATCGGCACCTCGGTGCTTCGATGTA
* *
35904930 CGGGAGCCATCGGCACCTTGGTGCTTCGATGTG
1 CGGGAGCCATCGGCACCTCGGTGCTTCGATGTA
*
35904963 CGAGAGCC-TCGGGCACCATCGGT
1 CGGGAGCCATC-GGCACC-TCGGT
35904986 AAACTAGGCC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
32 2 0.04
33 43 0.88
34 4 0.08
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.20
Consensus pattern (33 bp):
CGGGAGCCATCGGCACCTCGGTGCTTCGATGTA
Found at i:35905143 original size:42 final size:41
Alignment explanation
Indices: 35904936--35905393 Score: 201
Period size: 43 Copynumber: 10.8 Consensus size: 41
35904926 TGTACGGGAG
* * *
35904936 CCATCGGCACCTTGGTGCTTCGATGTGCGAGAGCCTCGGGCA
1 CCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTC-GGCA
* * * ** * * *
35904978 CCATCGGTAAACTAGGCCCTTAG-TCGTACGGGAGCCTCGGGCA
1 CCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAACCTC-GGCA
* * * *
35905021 CCACCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGATA
1 CCATCGGCACCTTGGTGCT-TGGATGTGCGGGAACCTCGG-CA
** * **
35905063 CTGGT-GGCAACCTAGGCCCTTGG-TCGTGC-GGAAGCCTCGAGCA
1 C-CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAA-CCTCG-GCA
*
35905106 CCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCA
1 CCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTCG-GCA
*** * **** **
35905148 CCATCGGCAAAATAG-GCCCCAAGTCGTGCGGGGGCCTCGGCCA
1 CCATCGGCACCTTGGTGCTTGGA-T-GTGCGGGAACCTCGG-CA
* * * ** *
35905191 CGATCGGTACCTCGGCCCTTGG-TCGTGCGGGAGCCTCGAGCA
1 CCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAACCTCG-GCA
* * * *
35905233 CCATCGACACCTTGGTGGATCGGATGTGCGGGACCCTCGGCCA
1 CCATCGGCACCTTGGT-GCTTGGATGTGCGGGAACCTCGG-CA
** * * * *
35905276 GTATCGGTACCTCGGTGGCTAGGAGGTGCGGGAACCTCGGACA
1 CCATCGGCACCTTGGT-GCTTGGATGTGCGGGAACCTCGG-CA
* *
35905319 CCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCA
1 CCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTC-GGCA
*
35905361 CCCATCGGCACCTTGGTGCCTGGGATGTGCGGG
1 -CCATCGGCACCTTGGTG-CTTGGATGTGCGGG
35905394 CTAAAGAAGA
Statistics
Matches: 307, Mismatches: 84, Indels: 48
0.70 0.19 0.11
Matches are distributed among these distances:
41 5 0.02
42 124 0.40
43 162 0.53
44 16 0.05
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.19
Consensus pattern (41 bp):
CCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTCGGCA
Found at i:35905157 original size:85 final size:83
Alignment explanation
Indices: 35904936--35905238 Score: 268
Period size: 85 Copynumber: 3.6 Consensus size: 83
35904926 TGTACGGGAG
*
35904936 CCATCGGCACCTTGGTGCTTCGATGTGCGAGAGCCTCGGGCACCATCGGTAAACTAGGCCCTTAG
1 CCATCGGCACCTTGGTGCTT-GATGTGCGAGAGCCTC-GGCACCATCGGCAAACTAGGCCCTTAG
* *
35905001 TCGTACGGGAGCCTCGGGCA
64 TCGTACGGAAGCCTCGAGCA
* * * * ** * *
35905021 CCACCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGATACTGGT-GGCAACCTAGGCCCTTG
1 CCATCGGCACCTTGGTGCT-TGATGTGCGAGAGCCTCGG-CAC-CATCGGCAAACTAGGCCCTTA
*
35905085 GTCGTGCGGAAGCCTCGAGCA
63 GTCGTACGGAAGCCTCGAGCA
* * **
35905106 CCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAAAATAGGCCCCAAG
1 CCATCGGCACCTTGGTGCTT-GATGTGCGAGAGCCTCG-GCACCATCGGCAAACTAGGCCCTTAG
* **
35905171 TCGTGCGGGGGCCTCG-GCCA
64 TCGTACGGAAGCCTCGAG-CA
* * * ** * *
35905191 CGATCGGTACCTCGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
1 CCATCGGCACCTTGGTGCTTGAT-GTGCGAGAGCCTCG-GCACCATCG
35905239 ACACCTTGGT
Statistics
Matches: 175, Mismatches: 35, Indels: 16
0.77 0.15 0.07
Matches are distributed among these distances:
84 7 0.04
85 165 0.94
86 3 0.02
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (83 bp):
CCATCGGCACCTTGGTGCTTGATGTGCGAGAGCCTCGGCACCATCGGCAAACTAGGCCCTTAGTC
GTACGGAAGCCTCGAGCA
Found at i:35905262 original size:85 final size:85
Alignment explanation
Indices: 35905173--35905357 Score: 214
Period size: 85 Copynumber: 2.2 Consensus size: 85
35905163 GCCCCAAGTC
* * * *
35905173 GTGCGGGGGCCTCGGCCACG-ATCGGTACCTCGG-CCCTTGGTCGTGCGGGAGCCTC-GAGCACC
1 GTGCGGGAGCCTCGGCCA-GTATCGGTACCTCGGTCCCTAGGACGTGCGGGAACCTCGGA-CACC
*
35905235 ATCGACACCTTGGTGGATCGGAT
64 ATCGACAACTTGGT-GATCGGAT
* ** *
35905258 GTGCGGGACCCTCGGCCAGTATCGGTACCTCGGTGGCTAGGAGGTGCGGGAACCTCGGACACCAT
1 GTGCGGGAGCCTCGGCCAGTATCGGTACCTCGGTCCCTAGGACGTGCGGGAACCTCGGACACCAT
* * *
35905323 CGGCAACTTGGTGCTTGGAT
66 CGACAACTTGGTGATCGGAT
35905343 GTGCGGGAGCCTCGG
1 GTGCGGGAGCCTCGG
35905358 GCACCCATCG
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
84 1 0.01
85 49 0.58
86 32 0.38
87 2 0.02
ACGTcount: A:0.14, C:0.29, G:0.38, T:0.19
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGCCAGTATCGGTACCTCGGTCCCTAGGACGTGCGGGAACCTCGGACACCAT
CGACAACTTGGTGATCGGAT
Found at i:35908251 original size:42 final size:42
Alignment explanation
Indices: 35908148--35908439 Score: 213
Period size: 42 Copynumber: 6.9 Consensus size: 42
35908138 AGCCTCCATG
* *
35908148 ACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGACACCATCGGTA
1 ACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG-C
* *
35908192 ACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
1 ACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGGC
* *
35908234 ACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACTATCGGC
1 ACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGGC
* * ** * * *
35908276 AAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGAC
1 -ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGGC
* * * **
35908318 ACCTCGGTACTAT-GAGGTGCGGGAGCCTCG-GACACTGTCGGC
1 ACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAG-CACCATCGGC
* ** *
35908360 AACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC
1 -ACCTTGGTGCATGGAT-GTGCGGGAGCCTCGAGCACCATCGGC
* *
35908403 ACCTTGGTGCATGGATGAGCGGGAGCCTTGAGCACCA
1 ACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCA
35908440 AAGCTAAAGT
Statistics
Matches: 194, Mismatches: 39, Indels: 32
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.01
41 12 0.06
42 97 0.50
43 72 0.37
44 12 0.06
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.20
Consensus pattern (42 bp):
ACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGGC
Found at i:35908338 original size:84 final size:85
Alignment explanation
Indices: 35908201--35908428 Score: 300
Period size: 84 Copynumber: 2.7 Consensus size: 85
35908191 AACCTTGATG
* * * *
35908201 CTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGA
1 CTTGGTTGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTACATGGAGGTGCGGGAGCATCGGA
35908266 CACTATCGGCAAACTAGGCC
66 CACTATCGGCAAACTAGGCC
* *
35908286 CTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGACACCTCGGTACTAT-GAGGTGCGGGAGCCTCG
1 CTTGGTTGTGCGGGAGCCTC-GAGCACCATCGGCACCTCGGTAC-ATGGAGGTGCGGGAGCATCG
* *
35908348 GACACTGTCGGCAACCTAGGCC
64 GACACTATCGGCAAACTAGGCC
* * * * *
35908370 CTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGAGCGGGAGC
1 CTTGGTTGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTACATGGAGGTGCGGGAGC
35908429 CTTGAGCACC
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
84 74 0.60
85 50 0.40
ACGTcount: A:0.18, C:0.28, G:0.36, T:0.19
Consensus pattern (85 bp):
CTTGGTTGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTACATGGAGGTGCGGGAGCATCGGA
CACTATCGGCAAACTAGGCC
Found at i:35908696 original size:24 final size:25
Alignment explanation
Indices: 35908669--35908726 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
35908659 CTCTAGCGAT
*
35908669 CCGTCCCGGT-GGTGCTCCGGAGAA
1 CCGTCCCGGTCGGTGCCCCGGAGAA
*
35908693 CCGTCCC-GTCGGTGCCCCGGCGAA
1 CCGTCCCGGTCGGTGCCCCGGAGAA
* *
35908717 TCGTTCCGGT
1 CCGTCCCGGT
35908727 AGCATAGGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 2 0.07
24 24 0.86
25 2 0.07
ACGTcount: A:0.09, C:0.38, G:0.34, T:0.19
Consensus pattern (25 bp):
CCGTCCCGGTCGGTGCCCCGGAGAA
Found at i:35908792 original size:43 final size:43
Alignment explanation
Indices: 35908731--35909410 Score: 508
Period size: 43 Copynumber: 15.9 Consensus size: 43
35908721 TCCGGTAGCA
35908731 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
35908774 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * * *
35908816 TCGGTGCTAGGAT-GTGCAGAAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * * *
35908859 TAAGCCATTGGTCATGCAGGAGCCTCGGGCGCCATCAGC-ATC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
35908901 TTGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
35908944 TAGGCCCTTGGTCGTGCGAGAACCTCAGGCACCATCGG-TACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** ** * ** **
35908986 TCTGTGCTATGAT-GTGCGGGAGCCTCGAACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
35909029 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * *
35909071 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * *
35909114 TAGGCCTTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
35909157 TAAGCCCTTGGTCGTGCGGGATCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * **
35909200 TAGGCCCCTGGTCGTGCGGGCA-CCGCGGCCACCATC-GTTACC
1 TAGGCCCTTGGTCGTGCGGG-AGCCTCGGGCACCATCGGCAACC
* *
35909242 TCGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
35909284 TTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGC-ACC
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * ** * * *
35909327 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCTTTGGCAA-C
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
35909370 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
35909411 CCTTGGTGCC
Statistics
Matches: 498, Mismatches: 118, Indels: 42
0.76 0.18 0.06
Matches are distributed among these distances:
41 1 0.00
42 185 0.37
43 309 0.62
44 3 0.01
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:35908907 original size:85 final size:84
Alignment explanation
Indices: 35908751--35909430 Score: 482
Period size: 85 Copynumber: 8.0 Consensus size: 84
35908741 GTCGTGCGGG
*
35908751 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACC
*
35908816 TCGGTGCTAGGATGTGCAGA
65 TTGGTGCTAGGATGTGCAGA
* * * * * * * *
35908836 AGCCCCGGACACCATCGGCAAACTAAGCCATTGGTCATGCAGGAGCCTCGGGCGCCATCAGCATC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACC
** * *
35908901 TTGGTGCTTCGATGTGCGGG
65 TTGGTGCTAGGATGTGCAGA
* * * *
35908921 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCAGGCACCATCGGTACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGCACC
* * *
35908986 TCT-GTGCTATGATGTGCGGG
65 T-TGGTGCTAGGATGTGCAGA
* ** *
35909006 AGCCTCGAACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACC
*
35909071 TTGGTGCTTGGATGTGCGAGA
65 TTGGTGCTAGGATGTGC-AGA
* * *
35909092 A-CCTCGCG-CACCATCGGCAACCTAGGCCTTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCAA
1 AGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGC-A
* ** ** * * *
35909155 ACTAAGCCCTTGG-TCGTGCGGG
63 CCTTGGTGCTAGGAT-GTGCAGA
* * ** * **
35909177 ATCCTCGGGCACCATCGGCAAAATAGGCCCCTGGTCGTGCGG-GCAC-CGCGGCCACCATCGTTA
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGC-CTCG-GG-CACCATCGGCA
* ** * * *
35909240 CCTCGGCCCTTGG-TCGTGCGGG
63 CCTTGGTGCTAGGAT-GTGCAGA
* * * ** * *
35909262 AGCCTTGGGCACCATCGGC-ACCTTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGCA
1 AGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGGCA
* * * *
35909325 CCTCGGTGGCTAGGAGGTGCGGG
63 CCTTGGT-GCTAGGATGTGCAGA
* * * **
35909348 AGCCTCGGACACCTTTGGCAA-CTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCA-CCATCGGCA
*
35909411 CCTTGGTGCCTGGGATGTGC
63 CCTTGGTG-CTAGGATGTGC
35909431 GGGCTAAAGA
Statistics
Matches: 479, Mismatches: 92, Indels: 47
0.78 0.15 0.08
Matches are distributed among these distances:
84 10 0.02
85 347 0.72
86 117 0.24
87 5 0.01
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (84 bp):
AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGGCACCT
TGGTGCTAGGATGTGCAGA
Found at i:35909026 original size:170 final size:170
Alignment explanation
Indices: 35908744--35909153 Score: 550
Period size: 170 Copynumber: 2.4 Consensus size: 170
35908734 GCCCTTGGTC
* * *
35908744 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCAGGCACCAT
*
35908809 CGGCACCTCGGTGCTAGGATGTGCAGAAGCCCCGGACACCATCGGCAAACTAAGCCATTGGTCAT
66 CGGCACCTCGGTGCTAGGATGTGCAGAAGCCCCGAACACCATCGGCAAACTAAGCCATTGGTCAT
* * *
35908874 GCAGGAGCCTCGGGCGCCATCAGCATCTTGGTGCTTCGAT
131 GCAGGAGCCTCGAGCACCATCAGCACCTTGGTGCTTCGAT
35908914 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCAGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCAGGCACCAT
* * * * * * ** * * * *
35908979 CGGTACCTCTGTGCTATGATGTGCGGGAGCCTCGAACACTGTCGGCAACCTAGGCCCTTGGTCGT
66 CGGCACCTCGGTGCTAGGATGTGCAGAAGCCCCGAACACCATCGGCAAACTAAGCCATTGGTCAT
* * *
35909044 GCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
131 GCAGGAGCCTCGAGCACCATCAGCACCTTGGTGCTTCGAT
* * * * ** * *
35909084 GTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCTTTGGTCGTGCGAGAGGCTCGGGCACTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCAGGCACCAT
35909149 CGGCA
66 CGGCA
35909154 AACTAAGCCC
Statistics
Matches: 209, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
170 209 1.00
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (170 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCAGGCACCAT
CGGCACCTCGGTGCTAGGATGTGCAGAAGCCCCGAACACCATCGGCAAACTAAGCCATTGGTCAT
GCAGGAGCCTCGAGCACCATCAGCACCTTGGTGCTTCGAT
Found at i:35909253 original size:128 final size:128
Alignment explanation
Indices: 35908733--35909281 Score: 461
Period size: 128 Copynumber: 4.3 Consensus size: 128
35908723 CGGTAGCATA
* * *
35908733 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCC
* ** * * * * *
35908798 TCGGGCACCATCGGC-ACCTCGGTGCTAGGAT-GTGC-AGAAGCCCCGGACACCATCGGCAAACT
66 TCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAA-CCTCGGCCACCATC-GCTACCT
*
35908860 A
128 C
* * * * * * * * ** ** *
35908861 AGCCATTGGTCATGCAGGAGCCTCGGGCGCCATCAGC-ATCTTGGTGCTTCGAT-GTGCGGGAGC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACTATCGGCAAACTAAGCCCTT-GGTCGTGCGGGAGC
*
35908924 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCAGG-CACCATCGGTACCTC
65 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTC-GGCCACCATCGCTACCTC
* ** * ** * * *
35908988 TGTGCTATGAT-GTGCGGGAGCCTCGAACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
1 GGCCCT-TGGTCGTGCGGGAGCCTCGGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGC
* * ** *
35909052 CTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC-GCGCACCATCGGCAACC
65 CTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAACCTCGGC-CACCATC-GCTACC
*
35909114 TA
127 TC
* * * *
35909116 GGCCTTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCGGGATCC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCC
** * * * * *
35909181 TCGGGCACCATCGGCAAAATAGGCCCCTGGTCGTGCGGGCACCGCGGCCACCATCGTTACCTC
66 TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGCCACCATCGCTACCTC
* *
35909244 GGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACTATCGGCA
35909282 CCTTGGTGGC
Statistics
Matches: 329, Mismatches: 76, Indels: 32
0.75 0.17 0.07
Matches are distributed among these distances:
125 1 0.00
127 95 0.29
128 200 0.61
129 31 0.09
130 2 0.01
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (128 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCC
TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGCCACCATCGCTACCTC
Found at i:35910359 original size:93 final size:93
Alignment explanation
Indices: 35910245--35910415 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
35910235 CTGTGCAGCA
*
35910245 TACCTAAGCCAGATGGAATTATGGATGTGTTGCCGTCCCTTCTCCATCCCGTG-CGCTTCGGGGT
1 TACCTAAGCCAGATGGAATTATGGATGTGTTGCCGTCCCTTCTCCATCCCGTGTC-CTTCGAGGT
35910309 GCATGGTGGACCTCAATCGTGGTGCTGCG
65 GCATGGTGGACCTCAATCGTGGTGCTGCG
*
35910338 TACCTAAGCCAGATGGAATTATGGATGTGTTGCCGTCCCTTCTCCATCCCGTGTCCTTTGAGGTG
1 TACCTAAGCCAGATGGAATTATGGATGTGTTGCCGTCCCTTCTCCATCCCGTGTCCTTCGAGGTG
35910403 CATGGTGGACCTC
66 CATGGTGGACCTC
35910416 GTCGGTGCAC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
93 74 0.99
94 1 0.01
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.29
Consensus pattern (93 bp):
TACCTAAGCCAGATGGAATTATGGATGTGTTGCCGTCCCTTCTCCATCCCGTGTCCTTCGAGGTG
CATGGTGGACCTCAATCGTGGTGCTGCG
Found at i:35921546 original size:17 final size:17
Alignment explanation
Indices: 35921524--35921587 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
35921514 AATCTTAGAG
35921524 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
35921541 TTCTAATTATGTCTTAGAG-
1 TTCTAA-T-TGT-ATACAGC
35921560 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
35921577 TTTTAATTGTA
1 TTCTAATTGTA
35921588 GCCTTTGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 4 0.11
17 19 0.50
18 2 0.05
19 9 0.24
20 4 0.11
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:35921557 original size:36 final size:36
Alignment explanation
Indices: 35921516--35921584 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
35921506 GATTATTTAA
35921516 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
*
35921552 TCTTAGAGTTCTAATTGTATACAGCTTTTAATT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATT
35921585 GTAGCCTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
Found at i:35921565 original size:19 final size:18
Alignment explanation
Indices: 35921516--35921567 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
35921506 GATTATTTAA
35921516 TCTTAGAGTTCTAA-TTG
1 TCTTAGAGTTCTAATTTG
* *
35921533 T-ATACAGCTTCTAATTATG
1 TCTTAGAG-TTCTAATT-TG
35921552 TCTTAGAGTTCTAATT
1 TCTTAGAGTTCTAATT
35921568 GTATACAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
16 4 0.15
17 7 0.26
18 1 0.04
19 11 0.41
20 4 0.15
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (18 bp):
TCTTAGAGTTCTAATTTG
Found at i:35922810 original size:42 final size:42
Alignment explanation
Indices: 35922742--35922991 Score: 190
Period size: 42 Copynumber: 5.9 Consensus size: 42
35922732 GAGCCTCCAT
** *
35922742 CACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
35922785 CACCTTGGTGCGTGGATGTGCGGGAGCATCG-GACACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
35922827 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCAGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
* * * * *
35922869 CACCTCGATGCTAT-GATGTGCGGGAGCTTCG-GAAACTATCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
35922911 CAACTTAGG-CCATTGG-TCGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTT-GGTGC-TTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
* * *
35922954 CACCTTGGTGCATGGATGAGCGGGAGCCTTGAGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCA
35922992 AAGATAAATT
Statistics
Matches: 160, Mismatches: 32, Indels: 31
0.72 0.14 0.14
Matches are distributed among these distances:
40 1 0.01
41 13 0.08
42 91 0.57
43 53 0.33
44 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:35922910 original size:84 final size:85
Alignment explanation
Indices: 35922759--35922980 Score: 283
Period size: 84 Copynumber: 2.6 Consensus size: 85
35922749 GTGGCTCAGA
* * *
35922759 TGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCGT-GGATGTGCGGGAGCATCGGACACCA
1 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC-TATGATGTGCGGGAGCATCGGAAACCA
*
35922823 TCGGCAAAC-TAGGCCCTTGGT
65 TCGGC-AACTTAGGCCATTGGT
* * * *
35922844 TGTG-GGGAGCCTCAGAG-ACCATCGGCACCTCGATGCTATGATGTGCGGGAGCTTCGGAAACTA
1 TGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGCTATGATGTGCGGGAGCATCGGAAACCA
35922907 TCGGCAACTTAGGCCATTGGT
65 TCGGCAACTTAGGCCATTGGT
* *
35922928 CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC-ATGGATGAGCGGGAGC
1 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTAT-GATGTGCGGGAGC
35922981 CTTGAGCACC
Statistics
Matches: 120, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
83 4 0.03
84 71 0.59
85 45 0.38
ACGTcount: A:0.19, C:0.26, G:0.35, T:0.20
Consensus pattern (85 bp):
TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTATGATGTGCGGGAGCATCGGAAACCAT
CGGCAACTTAGGCCATTGGT
Found at i:35923230 original size:24 final size:24
Alignment explanation
Indices: 35923203--35923277 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
35923193 GTTAGGTTCT
*
35923203 CGGCGGTGCTCCGGCGATCCGTCC
1 CGGCGGTGCTCCGGCGAACCGTCC
* **
35923227 CGGCGGTGCTCCGACGAACTATCC
1 CGGCGGTGCTCCGGCGAACCGTCC
* * *
35923251 CGTCGGGGCTCCGGCGAACCGTTC
1 CGGCGGTGCTCCGGCGAACCGTCC
35923275 CGG
1 CGG
35923278 TAGCATAGGC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.09, C:0.39, G:0.36, T:0.16
Consensus pattern (24 bp):
CGGCGGTGCTCCGGCGAACCGTCC
Found at i:35923663 original size:42 final size:42
Alignment explanation
Indices: 35923296--35923696 Score: 242
Period size: 42 Copynumber: 9.5 Consensus size: 42
35923286 GCCCTTGGTC
* * * *
35923296 GTGCGGGAGCCTCGGGCACCATCAGCACCTCGGTGCTAGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGAT
* * * * * **
35923338 GTGCAGGAGCCCCGAACACCATCGGCAAACTAAGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGTGCTTGGAT
* * * * * * * *
35923380 CATGCAGGAGCCTCGGGCGCCATTGGCACCTCGGTGTTTCGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGAT
* ** * * * *
35923423 GTGCGGGAGCCTCGGGTGCCATCGGCACCTTGGTACGTAGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGAT
* ** * * * *
35923465 GTGCGCGAGTATCG-GACACAATCGGCAAACTAGG-CCTTTGGTT
1 GTGCGGGAGCCTCGAG-CACCATCGGC-ACCTAGGTGC-TTGGAT
*
35923508 GTG-GGGAGCCTCGGAG-ACCATCGGCACCTCGGTGCTAT-GAT
1 GTGCGGGAGCCTC-GAGCACCATCGGCACCTAGGTGCT-TGGAT
* ** **
35923549 GTGTGGGAGCCTCG-GACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATCGGC-ACCTAGGTGCTTGGAT
* * *
35923591 CGTGCGAGAGCCTCGAGCACCATCGTCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGAT
* *
35923634 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGAT
* *
35923676 GAGCGGGAGCCTTGAGCACCA
1 GTGCGGGAGCCTCGAGCACCA
35923697 AAGCTAAAGT
Statistics
Matches: 270, Mismatches: 71, Indels: 36
0.72 0.19 0.10
Matches are distributed among these distances:
40 1 0.00
41 13 0.05
42 184 0.68
43 70 0.26
44 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGAT
Found at i:35923664 original size:211 final size:212
Alignment explanation
Indices: 35923283--35923667 Score: 524
Period size: 211 Copynumber: 1.8 Consensus size: 212
35923273 TCCGGTAGCA
35923283 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCACCTCGGTGCTAGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCACCTCGGTGCTAGGATGTGCAGGAGC
* * *
35923348 CCCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATTGGCACCTCG
66 CCCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGGCACCTCG
* * **
35923413 GTGTTTCGATGTGCGGGAGCCTCGGGTGCCATCGGCACCTTGGTACGTAGATGTGCGCGAGTATC
131 GTGCTTCGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTACGTAGATGTGCGCGAGTATC
35923478 GGACACAATCGGCAAAC
196 GGACACAATCGGCAAAC
* * * * **
35923495 TAGGCCTTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGGCACCTCGGTGCTATGATGTGTGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACCATCAGCACCTCGGTGCTAGGATGTGCAGGAG
* * ** * * * *
35923558 CCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGAGCACCATCGTCACCT
65 CCCCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAG-GAGCCTCGAGCACCATCGGCACCT
* *
35923622 TGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT
129 CGGTGCTTCGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT
35923668 GCATGGATGA
Statistics
Matches: 148, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
210 1 0.01
211 132 0.89
212 15 0.10
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (212 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCACCTCGGTGCTAGGATGTGCAGGAGC
CCCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGGCACCTCG
GTGCTTCGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTACGTAGATGTGCGCGAGTATC
GGACACAATCGGCAAAC
Found at i:35927529 original size:43 final size:42
Alignment explanation
Indices: 35927464--35927570 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 42
35927454 GGTGGCTCGA
* *
35927464 ATGTGTGGGAGCCTC-AGACACCATCGGTAACCATGATGCTTGG
1 ATGTGCGGGAGCCTCGAG-CACCATCGG-AACCATGATGCATGG
* * *
35927507 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGG
1 ATGTGCGGGAGCCTCGAGCACCATCGGAACCATGATGCATGG
* *
35927549 ATG-ACGGGAGCCTTGAGCACCA
1 ATGTGCGGGAGCCTCGAGCACCA
35927571 AAGCTAAAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 17 0.30
42 14 0.25
43 23 0.41
44 2 0.04
ACGTcount: A:0.21, C:0.26, G:0.33, T:0.20
Consensus pattern (42 bp):
ATGTGCGGGAGCCTCGAGCACCATCGGAACCATGATGCATGG
Found at i:35932876 original size:24 final size:24
Alignment explanation
Indices: 35932844--35932921 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
35932834 CCGGTTAGGT
* *
35932844 TCCCAGCGGTGCTCCGGCGATCCG
1 TCCCGGCGGTGCTCCGGCGAACCG
*
35932868 TCCTGGCGGTGCTCCGGCGAACCG
1 TCCCGGCGGTGCTCCGGCGAACCG
* * *
35932892 TCCCGTCGGTGCTCCAGCAAACCG
1 TCCCGGCGGTGCTCCGGCGAACCG
*
35932916 TTCCGG
1 TCCCGG
35932922 TAGCATAGGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.10, C:0.40, G:0.32, T:0.18
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAACCG
Found at i:35933072 original size:42 final size:42
Alignment explanation
Indices: 35933022--35933283 Score: 179
Period size: 42 Copynumber: 6.2 Consensus size: 42
35933012 GGTCATGCAG
*
35933022 GAGCCTCGGGTGCCATCGGCACCTCGGTGCTTCGATGTACGA
1 GAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTACGA
* * *
35933064 GAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGGTGTGCGG
1 GAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTACGA
* * * ** * *
35933106 GAGCCTCGGGCACCATCGGCAATCTAGGCCCTT-GGTCGTGCGA
1 GAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTACGA
* * * * *
35933149 GAGCCTCGGGCACCATCAGCACCTCAGTGCTAT-GATGTGCGG
1 GAGCCTCGGGCGCCATCGGCACCTCGGTGCT-TCGATGTACGA
* * ** * ** * *
35933191 GAGCCTCGGACACTGTCGGCAACCTAGGCCCTT-GGTCGTACGG
1 GAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTACGA
* * * * *
35933234 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGA
1 GAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTACGA
*
35933276 GAACCTCG
1 GAGCCTCG
35933284 CACACCATCG
Statistics
Matches: 175, Mismatches: 39, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
42 110 0.63
43 65 0.37
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (42 bp):
GAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTACGA
Found at i:35933151 original size:85 final size:84
Alignment explanation
Indices: 35933061--35933555 Score: 463
Period size: 85 Copynumber: 5.8 Consensus size: 84
35933051 CTTCGATGTA
*
35933061 CGAGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGGTGTGCGGGAGCCTCGGGCACCATCGGC
1 CGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GGTGTGCGGGAGCCTCGGGCACCATCGGC
*
35933126 AATCTAGGCCCTTGGTCGTG
65 AACCTAGGCCCTTGGTCGTG
* * * * **
35933146 CGAGAGCCTCGGGCACCATCAGCACCTCAGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGC
1 CGAGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGGTGTGCGGGAGCCTCGGGCACCATCGGC
*
35933211 AACCTAGGCCCTTGGTCGTA
65 AACCTAGGCCCTTGGTCGTG
* * * * * **
35933231 CGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCACACCATCGGC
1 CGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGC
*
35933296 AGCCTAGGCCCTTGGTCGTG
65 AACCTAGGCCCTTGGTCGTG
* * * ** **
35933316 CGAGAGGCTCGGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CGAGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGT-GTGCGGGAGCCTCGGGCACCATCGG
* ** *
35933381 TAAAATAGGCCCTTGGTCATG
64 CAACCTAGGCCCTTGGTCGTG
* * * ** **
35933402 CGGGGGCCTTGACCACCATCGGCACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-
1 CGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGC
* * ** *
35933466 TACCTTGGTGGCTCGGAT-GTG
65 AACCTAGG-CCCTTGG-TCGTG
* * * * * * *
35933487 CGGGAGTCTCGGGCAGCATCGGCACCTCGGAGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGG
1 CGAGAGCCTCGGGCACCATCGGCACCTCGG-TGCTTGG-TGTGCGGGAGCCTCGGGCACCATCGG
35933552 CAAC
64 CAAC
35933556 TTGGTGCCTG
Statistics
Matches: 331, Mismatches: 70, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
84 6 0.02
85 231 0.70
86 92 0.28
87 2 0.01
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (84 bp):
CGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCA
ACCTAGGCCCTTGGTCGTG
Found at i:35933158 original size:43 final size:43
Alignment explanation
Indices: 35932973--35933555 Score: 411
Period size: 43 Copynumber: 13.7 Consensus size: 43
35932963 GTGCTAGGAT
* * * * *
35932973 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * ** *
35933016 ATGCAGGAGCCTCGGGTGCCATCGGC-ACCTCGGTGCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * * **
35933058 GTACGAGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGGT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
*
35933100 GTGCGGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
35933143 GTGCGAGAGCCTCGGGCACCATCAGC-ACCTCAGTG--CTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTC
* **
35933185 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
35933228 GTACGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * ** *
35933270 GTGCGAGAACCTCGCACACCATCGGCAGCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
35933313 GTGCGAGAGGCTCGGGCACTATCGGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
35933356 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
35933399 ATGCGGGGGCCTTGACCACCATCGGC-ACCTCGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
35933441 GTGCGGGAGCCTCGGGCACCATCGG-TACCTTGGTGGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TC
* * * ** * **
35933484 GTGCGGGAGTCTCGGGCAGCATCGGC-ACCTCGGAGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
*
35933527 GTGCGGGAGCCTCGGACACCATCGGCAAC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAC
35933556 TTGGTGCCTG
Statistics
Matches: 429, Mismatches: 92, Indels: 37
0.77 0.16 0.07
Matches are distributed among these distances:
41 1 0.00
42 172 0.40
43 252 0.59
44 4 0.01
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:35933292 original size:170 final size:171
Alignment explanation
Indices: 35932979--35933431 Score: 448
Period size: 170 Copynumber: 2.7 Consensus size: 171
35932969 GGATGTGCAG
* * * * * * ***
35932979 GAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGTGCCATCGGC-A
1 GAGCCTCGGGCACCATCAGCAAACTAAGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGCAA
** * ** * * * * *
35933043 CCTCGGTGCTTCGAT-GTACGAGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGGTGTGCGGG
66 AATAGGCCCTT-GGTCGTACGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTCGGTGTGCGAG
* ** *
35933107 AGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGA
130 AACCTCGCACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * ** **
35933149 GAGCCTCGGGCACCATCAGC-ACCTCAGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCA
1 GAGCCTCGGGCACCATCAGCAAACTAAGCCCT-TGATCGTGCGGGAGCCTCGGACACCATCGGCA
** *
35933212 ACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTT-GGATGTGCGA
65 AAATAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTCGG-TGTGCGA
*
35933276 GAACCTCGCACACCATCGGCAGCCTAGGCCCTTGGTCGTGCGA
129 GAACCTCGCACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * * * * *
35933319 GAGGCTCGGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGGGCACCATCAGCAAACTAAGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * *
35933384 AATAGGCCCTTGGTCATGCGGGGGCCTTGACCACCATCGGCACCTCGG
66 AATAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGCACCTCGG
35933432 CCCTTGGTCG
Statistics
Matches: 228, Mismatches: 49, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
169 30 0.13
170 127 0.56
171 71 0.31
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (171 bp):
GAGCCTCGGGCACCATCAGCAAACTAAGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGCAA
AATAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTCGGTGTGCGAGA
ACCTCGCACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
Found at i:35933488 original size:128 final size:126
Alignment explanation
Indices: 35932972--35933510 Score: 424
Period size: 128 Copynumber: 4.2 Consensus size: 126
35932962 GGTGCTAGGA
* * * * ***
35932972 TGTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTCATGC-AGGAGCCTCGGGTGCC
1 TGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCATGCGA-GAGCCTCGGCCACC
** * * * * *
35933036 ATCGGCACCTCGGTGCTTCGATGTACGAGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGG
65 ATCGGCACCTCGGCCCTT-GATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTCGG
* * *
35933099 TGTGCGGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
1 TGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCATGCGAGAGCCTCGGCCACCA
* * ** * * ** *
35933164 TCAGCACCTCAGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
66 TCGGCACCTCGGCCCT-TGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTCGG
* * * * ** * *
35933226 TCGTACGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC-GCACA
1 T-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCATGCGAGAGCCTCGGC-CA
* * * * * * *
35933288 CCATCGGCAGCCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCAAACTAAGCCCTTG
63 CCATCGGCA-CCTCGGCCCTTGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTCG
35933353 G
126 G
* * * * * *
35933354 TCGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCATGCGGGGGCCTTGACCACC
1 T-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCATGCGAGAGCCTCGGCCACC
* * * * **
35933419 ATCGGCACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-TACCTTGGTGGCTCGG
65 ATCGGCACCTCGGCCCTTGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTCGG
* *
35933482 ATGTGCGGGAGTCTCGGGCAGCATCGGCA
1 -TGTGCGGGAGCCTCGGGCACCATCGGCA
35933511 CCTCGGAGGC
Statistics
Matches: 331, Mismatches: 68, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
126 1 0.00
127 136 0.41
128 164 0.50
129 29 0.09
130 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (126 bp):
TGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCATGCGAGAGCCTCGGCCACCA
TCGGCACCTCGGCCCTTGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTCGG
Found at i:35935103 original size:36 final size:36
Alignment explanation
Indices: 35935057--35935127 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
35935047 TCTACTATGG
35935057 TGGTGACGGGTGAC-AGAGAATTAGGGTTCGATTCCA
1 TGGTGACGGGTGACGA-AGAATTAGGGTTCGATTCCA
35935093 TGGTGACGGGTGACGAAGAATTAGGGTTCGATTCC
1 TGGTGACGGGTGACGAAGAATTAGGGTTCGATTCC
35935128 GGAGAGGGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.37, T:0.25
Consensus pattern (36 bp):
TGGTGACGGGTGACGAAGAATTAGGGTTCGATTCCA
Found at i:35941439 original size:42 final size:42
Alignment explanation
Indices: 35941335--35941669 Score: 317
Period size: 42 Copynumber: 7.9 Consensus size: 42
35941325 GAGCCTCCAT
* * *
35941335 CACCTTTGTGGCTCGGATGTGTGGGAGCCTC-AGACACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
35941378 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
35941421 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
35941463 CAAACTAGGCCCTTGGTTGTG-GAGAGCCTCGAAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTCG-AGCACCATCGG
* **
35941505 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCG-GACACTGTCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCGG
* ** *
35941547 CAACCTAGGCCCTTGG-TCGTGCGGGACCCTCGAGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
35941590 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
35941632 CACCTTGGTGCATGGATGAGCGGGAGCC-CTGAGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCA
35941670 AAGCTAAAGT
Statistics
Matches: 239, Mismatches: 37, Indels: 32
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
41 14 0.06
42 142 0.59
43 72 0.30
44 10 0.04
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:35941632 original size:85 final size:84
Alignment explanation
Indices: 35941335--35941633 Score: 354
Period size: 85 Copynumber: 3.5 Consensus size: 84
35941325 GAGCCTCCAT
* * * * * * ***
35941335 CACCTTTGTGGCTCGGATGTGTGGGAGCCTCAGACACCATCGGTAACCTTGATGCTTGGATGTGC
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGC
35941400 GGGAGCCTCGAGCACCATCGG
64 GGGAGCCTCGAGCACCATCGG
* * *
35941421 CACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCATCGGCAAACTAGGCCCTTGGTTGTG-G
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCG
*
35941485 AGAGCCTCGAAG-ACCATCGG
65 GGAGCCTCG-AGCACCATCGG
* **
35941505 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGC
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGC
*
35941569 GGGACCCTCGAGCACCATCGG
64 GGGAGCCTCGAGCACCATCGG
35941590 CACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGCA
35941634 CCTTGGTGCA
Statistics
Matches: 181, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
83 1 0.01
84 75 0.41
85 97 0.54
86 8 0.04
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (84 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTGTGCGG
GAGCCTCGAGCACCATCGG
Found at i:35941911 original size:24 final size:24
Alignment explanation
Indices: 35941878--35941955 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
35941868 TCGGTTAGGT
* *
35941878 TCCCGGCGGTGCTCCGGCGATCCG
1 TCCCGACGGTGCTCCGGCGAACCG
*
35941902 TCCCGACGGTGTTCCGGCGAACCG
1 TCCCGACGGTGCTCCGGCGAACCG
* *
35941926 TCCCGTCGGTGCTCCGGTGAACCG
1 TCCCGACGGTGCTCCGGCGAACCG
*
35941950 TTCCGA
1 TCCCGA
35941956 TAGCATAGGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.09, C:0.38, G:0.33, T:0.19
Consensus pattern (24 bp):
TCCCGACGGTGCTCCGGCGAACCG
Found at i:35942195 original size:85 final size:84
Alignment explanation
Indices: 35942101--35942647 Score: 456
Period size: 85 Copynumber: 6.4 Consensus size: 84
35942091 GTGCTTCGAT
* * *
35942101 GTGCGGGAGCCTCGGGCGCCATCGGCATCTCAGTGCTTCGATGTGCGGGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGCCTCGGGCACCATC
*
35942166 AGCATCCTAGGCCCTTGGTC
65 AGCAACCTAGGCCCTTGGTC
* * **
35942186 GTGCGGGAGCCTTGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCGGGAGCCTCGGGCACCATC
*
35942251 GGCAACCTAGGCCCTTGGTC
65 AGCAACCTAGGCCCTTGGTC
* * * * * *
35942271 GTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGCCTCGGGCACCATC
*
35942336 -GACAGCCTAGGCCCTTGGTC
65 AG-CAACCTAGGCCCTTGGTC
* * * * * * ** ** *
35942356 GTGTGAGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAGCCTCGGGCACCAT
* ** *
35942421 CGGCAAAATAGGCCCTTTGTC
64 CAGCAACCTAGGCCCTTGGTC
* * * ** * *
35942442 GTGCGGGGGCCTCGGCCACCATCGGCACCTTGGCCCTTGCTCGTGCGGGAGCCTCGGGCAGCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGAT-GTGCGGGAGCCTCGGGCACCATC
* ** *
35942507 AGC-ACCTTGGTGGCTCGGAT-
65 AGCAACCTAGG-CCCTTGG-TC
* * * *
35942527 GTGCGGGAGCCTCGGGCAGCATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCT-TGATGTGCGGGAGCCTCGGGCACCAT
* * * * * *
35942592 C-GGAAACTTGGTGCTTTGAT-
64 CAGCAACCTAGG-CCCTTGGTC
* *
35942612 GTGCGGGAGCCTCGGGCACCCATCGGAACCTTGGTG
1 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTCGGTG
35942648 TCTGGGATGT
Statistics
Matches: 372, Mismatches: 78, Indels: 24
0.78 0.16 0.05
Matches are distributed among these distances:
84 6 0.02
85 256 0.69
86 108 0.29
87 2 0.01
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (84 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCCTCGGGCACCATCA
GCAACCTAGGCCCTTGGTC
Found at i:35942203 original size:43 final size:42
Alignment explanation
Indices: 35941961--35942642 Score: 446
Period size: 43 Copynumber: 16.0 Consensus size: 42
35941951 TCCGATAGCA
35941961 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * * * ** ** *
35942003 TCGGTGCTAGGAT-ATGCAGGAGCCCCGGAAACCATTAGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* * * **
35942046 TAAGCCCTTGGTCATGCAGGAGCCTCGGGTGCCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * *
35942088 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCGCCATCGGCATC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* *
35942130 TCAGTG--CTTCGAT-GTGCGGGAGCCTCGGGCACCATCAGCATCC
1 T-AG-GCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CC
*
35942173 TAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * **
35942215 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* *
35942258 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * * *
35942300 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGCACCATCGACAGCC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA-CC
* * * * * *
35942343 TAGGCCCTTGGTCGTGTGAGAGGCTCGGGCACTATCGACAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* **
35942386 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* * *
35942429 TAGGCCCTTTGTCGTGCGGGGGCCTCGGCCACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * *
35942471 TTGGCCCTTGCTCGTGCGGGAGCCTCGGGCAGCATCAGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * *
35942513 TTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGCACC
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * ** * * *
35942556 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGAAAC
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * * *
35942599 TTGGTGCTTTGAT-GTGCGGGAGCCTCGGGCACCCATCGGAACC
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCACC
35942642 T
1 T
35942643 TGGTGTCTGG
Statistics
Matches: 507, Mismatches: 112, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.00
42 221 0.44
43 282 0.56
44 3 0.01
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (42 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
Found at i:35942477 original size:128 final size:128
Alignment explanation
Indices: 35942040--35942501 Score: 389
Period size: 128 Copynumber: 3.6 Consensus size: 128
35942030 GAAACCATTA
* * * * *** * **
35942040 GCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGTGCCATCGGCACCTCGGTGCTTCGAT-GTG
1 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTT-GATCGTG
* * * * * ** * *
35942104 CGGGAGCCTCGGGCGCCATCGGC-ATCTCAGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCA
65 CGGGAGCCTCGGGCACTATCGACAAACTAAGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCG
* * * * **
35942167 GCATCCTAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTCGGTGCTATGAT-GTG
1 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCT-TGATCGTG
* * * * * *
35942231 CGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
65 CGGGAGCCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * ** * * * *
35942295 AC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC-GCGCACCATCGACAGCCTAGGCCCTTGGTCG
1 GCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGC-CACCATCGGCA-CCTAGGCCCTTGATCG
* * *
35942357 TGTGAGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
63 TGCGGGAGCCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
35942422 G
128 G
** * * * *
35942423 GCAAAATAGGCCCTTTGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTTGGCCCTTGCTCGTGC
1 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGATCGTGC
35942488 GGGAGCCTCGGGCA
66 GGGAGCCTCGGGCA
35942502 GCATCAGCAC
Statistics
Matches: 266, Mismatches: 59, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
126 1 0.00
127 108 0.41
128 127 0.48
129 28 0.11
130 2 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (128 bp):
GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGATCGTGC
GGGAGCCTCGGGCACTATCGACAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
Done.