Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 115 of 185
Found at i:35944513 original size:48 final size:48
Alignment explanation
Indices: 35944442--35944536 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
35944432 CCCTACTGCC
35944442 GGCGATGCGCTCCTGGCCTTAATTGCCCGGGTCATTCCTCCGGCGCTT
1 GGCGATGCGCTCCTGGCCTTAATTGCCCGGGTCATTCCTCCGGCGCTT
*
35944490 GGCGATGCGCT-CTAGGCCTTAATTGCCCGGGTCGTTCCTCCGGCGCT
1 GGCGATGCGCTCCT-GGCCTTAATTGCCCGGGTCATTCCTCCGGCGCT
35944537 GTTACTTTGA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 2 0.04
48 43 0.96
ACGTcount: A:0.08, C:0.35, G:0.31, T:0.26
Consensus pattern (48 bp):
GGCGATGCGCTCCTGGCCTTAATTGCCCGGGTCATTCCTCCGGCGCTT
Found at i:35947417 original size:22 final size:21
Alignment explanation
Indices: 35947387--35947445 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
35947377 ATACAATCAT
*
35947387 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
35947409 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
35947432 AGATTTGATTTGTA
1 AGATTTGATTTGTA
35947446 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:35949372 original size:43 final size:43
Alignment explanation
Indices: 35949311--35949396 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
35949301 TATATTCATC
**
35949311 CTTCCGAGAACTACATGATGATCTCTGATTTGAACCATCGTTA
1 CTTCCGAGAACTACATGATGATCTCTGATTCAAACCATCGTTA
35949354 CTTCCGAGAACTACATGATGATCTCTGATTCAAACCATCGTTA
1 CTTCCGAGAACTACATGATGATCTCTGATTCAAACCATCGTTA
35949397 TATGGTGCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (43 bp):
CTTCCGAGAACTACATGATGATCTCTGATTCAAACCATCGTTA
Found at i:35952606 original size:22 final size:21
Alignment explanation
Indices: 35952576--35952634 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
35952566 ATACAATCAT
*
35952576 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
35952598 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
35952621 AGATTTGATTTGTA
1 AGATTTGATTTGTA
35952635 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:35956420 original size:42 final size:42
Alignment explanation
Indices: 35956316--35956650 Score: 295
Period size: 42 Copynumber: 7.9 Consensus size: 42
35956306 GAGCCTCCAT
* * *
35956316 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGACACCATTGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
35956359 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATTGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
35956402 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * * ** *
35956444 TAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
* * * *
35956486 CACCTCGGTGCTAT-GATGTACGGGAGCCTCGGGCACCATCAG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAGCACCATCGG
* ** *
35956528 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
* *
35956571 TACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCAG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * * *
35956613 CACCTTGGTGCATGGATGAGCAGGAGCCTTGAGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCA
35956651 AAGTTAAAGT
Statistics
Matches: 237, Mismatches: 42, Indels: 26
0.78 0.14 0.09
Matches are distributed among these distances:
41 14 0.06
42 138 0.58
43 75 0.32
44 10 0.04
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:35958939 original size:225 final size:225
Alignment explanation
Indices: 35958544--35958993 Score: 794
Period size: 225 Copynumber: 2.0 Consensus size: 225
35958534 GCCAGCAGCC
35958544 GCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACT
1 GCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACT
* * * *
35958609 TAGGGGTGGGTCGGTCGGTCCGCCTCATGGTGAGCACCGGTCTGCTCGTCCCTACTACCGGCGAT
66 TAGGGGTGGGTCAGCCGGTCCGCCTCACGGTGAGCACCGGTCTGCTCATCCCTACTACCGGCGAT
* * *
35958674 GCGCTCCTGGCCTTAATTGGCCGGGTCGTTCCTTCGGCGCTGTTATTTTGAAGAAATTAGAGTGC
131 GCGCTCCTGGCCTTAATTGCCCGGGTCGTTCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGC
*
35958739 TCAAAGCAGGCCTATGCTTGTATACATTAG
196 TCAAAGCAGGCCTACGCTTGTATACATTAG
*
35958769 GCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACT
1 GCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACT
*
35958834 TAGGGGTGGGTCAGCCGGTCCGCCTCACGGTGAGCACCGGTCTGCTCATCCCTACTGCCGGCGAT
66 TAGGGGTGGGTCAGCCGGTCCGCCTCACGGTGAGCACCGGTCTGCTCATCCCTACTACCGGCGAT
35958899 GCGCT-CTAGGCCTTAATTGCCCGGGTCGTTCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTG
131 GCGCTCCT-GGCCTTAATTGCCCGGGTCGTTCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTG
35958963 CTCAAAGCAGGCCTACGCTTGTATACATTAG
195 CTCAAAGCAGGCCTACGCTTGTATACATTAG
35958994 CATGGGATAA
Statistics
Matches: 214, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
224 2 0.01
225 212 0.99
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.28
Consensus pattern (225 bp):
GCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACT
TAGGGGTGGGTCAGCCGGTCCGCCTCACGGTGAGCACCGGTCTGCTCATCCCTACTACCGGCGAT
GCGCTCCTGGCCTTAATTGCCCGGGTCGTTCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGC
TCAAAGCAGGCCTACGCTTGTATACATTAG
Found at i:35966694 original size:43 final size:43
Alignment explanation
Indices: 35966626--35966948 Score: 155
Period size: 42 Copynumber: 7.6 Consensus size: 43
35966616 AGCCTTTATC
* * *
35966626 ACCTTGATGGCTCGGATGTGTGGGAGCCTCAGA-CATCAGCGGTA
1 ACCTTGAT-GCTTGGATGTGCGGGAGCCTCAGAGCACCAGCGG-A
* *
35966670 ACCTTGATGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGC
1 ACCTTGATGCTTGGATGTGCGGGAGCCTCAGAGCACCAGCGGA
* * * * *
35966712 ACATTGGTGCATGGATGTGCGGGAGCATCAG-GCACCATCGGCA
1 ACCTTGATGCTTGGATGTGCGGGAGCCTCAGAGCACCAGCGG-A
* * *** * * * *
35966755 AACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGGC
1 ACCTTGATGCTTGGATGTGCGGGAGCCTCAGAGCACCAGCGGA
* * * *
35966796 ACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGA-CA-CTGTCGGCA
1 ACCTTGATGCT-TGGATGTGCGGGAGCCTCAGAGCACCAG-CGG-A
* *** * * *
35966839 ACCTAGGCCCTTGG-TCGGGCGGGAGCCTC-GAGCACCATCGGC
1 ACCTTGATGCTTGGAT-GTGCGGGAGCCTCAGAGCACCAGCGGA
* * * * *
35966881 ACCTTGGTGCTTCGATGTGCGAGAGCCTC-GAGCACCATCGGC
1 ACCTTGATGCTTGGATGTGCGGGAGCCTCAGAGCACCAGCGGA
** * *
35966923 ACCTTGGCGCATGGATGAGCGGGAGC
1 ACCTTGATGCTTGGATGTGCGGGAGC
35966949 TTTGAGCACC
Statistics
Matches: 219, Mismatches: 46, Indels: 30
0.74 0.16 0.10
Matches are distributed among these distances:
41 13 0.06
42 130 0.59
43 67 0.31
44 9 0.04
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ACCTTGATGCTTGGATGTGCGGGAGCCTCAGAGCACCAGCGGA
Found at i:35966731 original size:42 final size:42
Alignment explanation
Indices: 35966681--35966959 Score: 246
Period size: 42 Copynumber: 6.6 Consensus size: 42
35966671 CCTTGATGCT
* *
35966681 TGGATGTGCGGGAGCCTCGAGCACCATCGGCACATTGGTGCA
1 TGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGCGCA
* * * * *
35966723 TGGATGTGCGGGAGCATC-AGGCACCATCGGCAAACTAGGCCCT
1 TGGATGTGCGGGAGCCTCGA-GCACCATCGGC-ACCTTGGCGCA
* * *
35966766 TGGTTGTG-GGGAGCCTCGGAG-ACCATCGGCACCTCGGTGCTA
1 TGGATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGCGC-A
** * * *
35966808 T-GATGTGCGGGAGCCTCG-GACACTGTCGGCAACCTAGGCCCT
1 TGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGCGCA
* * *
35966850 TGG-TCGGGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 TGGAT-GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGCGCA
* *
35966892 TCGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGCGCA
1 TGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGCGCA
* * *
35966934 TGGATGAGCGGGAGCTTTGAGCACCA
1 TGGATGTGCGGGAGCCTCGAGCACCA
35966960 AAGCTAAAGT
Statistics
Matches: 187, Mismatches: 37, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
40 1 0.01
41 13 0.07
42 128 0.68
43 43 0.23
44 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.19
Consensus pattern (42 bp):
TGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGCGCA
Found at i:35967262 original size:42 final size:42
Alignment explanation
Indices: 35967215--35967690 Score: 352
Period size: 43 Copynumber: 11.2 Consensus size: 42
35967205 GCCCGTGGTC
* * * *
35967215 GTGCAGGAGCCTCGGGCACCATCGGTACCTCGGTGCTAGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGAT
* * * * * ** **
35967257 GTGCAGGAGCCCCGGACACCATTGGCAAACTAAGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT
* * * * * *
35967299 CATGCAGGAGCCGCGGGCGCTATCGGCACCTCGGTGCTTCGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGAT
* * *
35967342 GTGCGGGAGCCTCGGGCGCCATCGGCACCTTGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGAT
* **
35967384 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT
* * ** * **
35967426 CTTGCGGGAGCCTCTGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT
* * * * *
35967469 CGTGCGGGGGCCTCGGCCACCATCGGTACCTCAG-CCTTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGC-TTGGAT
* *
35967511 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTTGGAT
* * * *
35967555 ATGCGGGAGCCTCGGGCAGCATCGGCACCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTTGGAT
* * *
35967598 GTTCGGGAGCCTCGGAG-ACCATCGGCAACTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGG-GCACCATCGGCACCTCGGTGCTTGGAT
* * *
35967640 CTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTCGGTG-CTTGGAT
35967684 GTGCGGG
1 GTGCGGG
35967691 CTAAAGAAGA
Statistics
Matches: 352, Mismatches: 69, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
41 3 0.01
42 151 0.43
43 183 0.52
44 15 0.04
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.19
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGAT
Found at i:35967450 original size:85 final size:85
Alignment explanation
Indices: 35967343--35967667 Score: 304
Period size: 85 Copynumber: 3.8 Consensus size: 85
35967333 TGCTTCGATG
* *
35967343 TGCGGGAGCCTCGGGCGCCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCG
1 TGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCG
35967408 GCAACCTAGGCCCTTGGTCT
66 GCAACCTAGGCCCTTGGTCT
* * * ** * * *
35967428 TGCGGGAGCCTCTGGCACCATCGGCAAAATAGGCCCTT-GGTCGTGCGGGGGCCTCGGCCACCAT
1 TGCGGGAGCCTCGGGCACCATCGGC-AACTTGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCAT
* * *
35967492 CGG-TACCTCA-GCCTTTGGTCG
64 CGGCAACCT-AGGCCCTTGGTCT
* * *
35967513 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGC-TCGGATATGCGGGAGCCTCGGGCAGCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACTTGGT-GCTTC-GATGTGCGGGAGCCTCGGGCACCAT
* ** * **
35967577 CGGC-ACCTCGGTGGCTAGGAGGT
64 CGGCAACCTAGG-CCCTTGG-TCT
* *
35967600 T-CGGGAGCCTCGGAG-ACCATCGGCAACTTGGTGCTTGGATCTGCGGGAGCCTCGGGCACCCAT
1 TGCGGGAGCCTCGG-GCACCATCGGCAACTTGGTGCTTCGATGTGCGGGAGCCTCGGGCA-CCAT
35967663 CGGCA
64 CGGCA
35967668 CCTTGGTGCC
Statistics
Matches: 190, Mismatches: 36, Indels: 26
0.75 0.14 0.10
Matches are distributed among these distances:
84 5 0.03
85 111 0.58
86 72 0.38
87 2 0.01
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.19
Consensus pattern (85 bp):
TGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCG
GCAACCTAGGCCCTTGGTCT
Found at i:35967630 original size:86 final size:86
Alignment explanation
Indices: 35967220--35967675 Score: 258
Period size: 85 Copynumber: 5.4 Consensus size: 86
35967210 TGGTCGTGCA
* ** * * * * *
35967220 GGAGCCTCGGGCA-CCATCGGTACCTCGGT-GCTAGGTTGTGCAGGAGCCCCGGACACCATTGGC
1 GGAGCCTCGGGCACCCATCGGCACCTCGGTGGCTAGGAGGTTCGGGAGCCTCGGGCACCATCGGC
** ** * *
35967283 AAACTAAGCCCTTGG-TCATGCA
66 -AACTTGGTGCTCGGAT-ATGCG
* * * ** * * *
35967305 GGAGCCGCGGGC-GCTATCGGCACCTCGGT-GCTTCGATGTGCGGGAGCCTCGGGCGCCATCGGC
1 GGAGCCTCGGGCACCCATCGGCACCTCGGTGGCTAGGAGGTTCGGGAGCCTCGGGCACCATCGGC
* *
35967368 ACCTTGGTGCTTC-GATGTGCG
66 AACTTGGTGC-TCGGATATGCG
* ** * ** *
35967389 GGAGCCTCGGGCA-CCATCGGCAACCTAGG-CCCTTGG-TCTTGCGGGAGCCTCTGGCACCATCG
1 GGAGCCTCGGGCACCCATCGGC-ACCTCGGTGGCTAGGAGGTT-CGGGAGCCTCGGGCACCATCG
* * ** * *
35967451 GCAAAATAGGCCCTTGG-TCGTGCG
64 GC-AACTTGGTGCTCGGAT-ATGCG
* * * * * * ** *
35967475 GGGGCCTCGGCCA-CCATCGGTACCTC--AGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 GGAGCCTCGGGCACCCATCGGCACCTCGGTGGC-TAGGAGGTTCGGGAGCCTCGGGCACCATCGG
*
35967537 CACCTTGGTGGCTCGGATATGCG
65 CAACTTGGT-GCTCGGATATGCG
*
35967560 GGAGCCTCGGGCA-GCATCGGCACCTCGGTGGCTAGGAGGTTCGGGAGCCTCGGAG-ACCATCGG
1 GGAGCCTCGGGCACCCATCGGCACCTCGGTGGCTAGGAGGTTCGGGAGCCTCGG-GCACCATCGG
* *
35967623 CAACTTGGTGCTTGGATCTGCG
65 CAACTTGGTGCTCGGATATGCG
*
35967645 GGAGCCTCGGGCACCCATCGGCACCTTGGTG
1 GGAGCCTCGGGCACCCATCGGCACCTCGGTG
35967676 CCTGGGATGT
Statistics
Matches: 287, Mismatches: 65, Indels: 37
0.74 0.17 0.10
Matches are distributed among these distances:
84 35 0.12
85 170 0.59
86 79 0.28
87 3 0.01
ACGTcount: A:0.14, C:0.31, G:0.35, T:0.19
Consensus pattern (86 bp):
GGAGCCTCGGGCACCCATCGGCACCTCGGTGGCTAGGAGGTTCGGGAGCCTCGGGCACCATCGGC
AACTTGGTGCTCGGATATGCG
Found at i:35971469 original size:42 final size:42
Alignment explanation
Indices: 35971365--35972037 Score: 541
Period size: 42 Copynumber: 15.9 Consensus size: 42
35971355 GAGCATCCAT
* * * * * *
35971365 CACCTTGGTGGCTCGAATGTGTGAGAGCCTCAAACACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* **
35971408 TAACCTTAATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
35971451 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCATCGA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
35971493 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-A-CATTCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCA-TCGG
* * ** *
35971535 CACCTTCGTGCTAT-GAAGTGCGGGAGCCTCG-GACACTGTCCG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCGG
* ** * * *
35971577 CAACCTAGGCCCTTGG-TCGTGGGGGAACCTCGAGCACCATTGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
35971620 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
35971662 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCATCGA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
35971704 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACAATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
** *
35971746 CACCTTGGTGCTAT-GATGTGCGGGAGCCTCG-GACACTGTCCG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCGG
* ** * *
35971788 CAACCTAGGCCCTTGG-TCGTGCGGGAACCTCGAGCACCATTGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
35971831 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* ** *
35971873 CACCTTGGTGCATGGATGTGCGGGAGCCTCG-GACACTGTCCG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
** * *
35971915 CAACCTAT-GCCCTTGG-TCGTGCGGGAACCTCGAGCACCATTGG
1 C-ACCT-TGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
35971958 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
35972000 CACCTTGGTGCATGGATGAGCGGGAGCCTTGAGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCA
35972038 AAGCTAAAGT
Statistics
Matches: 492, Mismatches: 102, Indels: 72
0.74 0.15 0.11
Matches are distributed among these distances:
40 2 0.00
41 30 0.06
42 308 0.63
43 140 0.28
44 12 0.02
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:35971665 original size:127 final size:125
Alignment explanation
Indices: 35971504--35971780 Score: 334
Period size: 127 Copynumber: 2.2 Consensus size: 125
35971494 AAACTAGGCC
* *
35971504 CTTGGTTGTG-GGGAGCCTCGGAGACATTCGGCACCTTCGTGCTAT-GAAGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTC-GAGACATTCGGCACCTTCGTGC-ATGGAAGTGCGGGAGCATCGG
** * * *
35971567 ACACTGTCCG-CAACCTAGGCCCTTGGTCGTGGGGGAACCTC-GAGCACCATTGGCACCTTGGTG
64 ACACCAT-CGACAAACTAGGCCCTTGGTCGT-GGGGAACCTCGGAG-ACAATCGGCACCTTGGTG
* *
35971630 CTTGGATGTGCGGGAGCCTCGAGCACCA-TCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGG
1 CTTGGATGTGCGGGAGCCTCGAG-A-CATTCGGCACCTTCGTGCATGGAAGTGCGGGAGCATCGG
* *
35971694 ACACCATCGACAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACAATCGGCACCTTGGTG
64 ACACCATCGACAAACTAGGCCCTTGGTCGTGGGGAACCTCGGAGACAATCGGCACCTTGGTG
35971756 CTAT-GATGTGCGGGAGCCTCG-GACA
1 CT-TGGATGTGCGGGAGCCTCGAGACA
35971781 CTGTCCGCAA
Statistics
Matches: 133, Mismatches: 11, Indels: 17
0.83 0.07 0.11
Matches are distributed among these distances:
123 2 0.02
124 1 0.01
125 1 0.01
126 60 0.45
127 67 0.50
128 2 0.02
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.21
Consensus pattern (125 bp):
CTTGGATGTGCGGGAGCCTCGAGACATTCGGCACCTTCGTGCATGGAAGTGCGGGAGCATCGGAC
ACCATCGACAAACTAGGCCCTTGGTCGTGGGGAACCTCGGAGACAATCGGCACCTTGGTG
Found at i:35971781 original size:211 final size:211
Alignment explanation
Indices: 35971417--35971988 Score: 970
Period size: 211 Copynumber: 2.7 Consensus size: 211
35971407 GTAACCTTAA
35971417 TGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCG
1 TGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCG
* *
35971482 GACACCATCGACAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACATTCGGCACCTTCGTGCT
66 GACACCATCGACAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACAATCGGCACCTTGGTGCT
* *
35971547 ATGAAGTGCGGGAGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGGGGGAACCTCGAGC
131 ATGATGTGCGGGAGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGC
35971612 ACCATTGGCACCTTGG
196 ACCATTGGCACCTTGG
35971628 TGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCG
1 TGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCG
35971693 GACACCATCGACAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACAATCGGCACCTTGGTGCT
66 GACACCATCGACAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACAATCGGCACCTTGGTGCT
35971758 ATGATGTGCGGGAGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGC
131 ATGATGTGCGGGAGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGC
35971823 ACCATTGGCACCTTGG
196 ACCATTGGCACCTTGG
*
35971839 TGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCCTCG
1 TGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCG
** * * * * * *
35971904 GACACTGTCCG-CAACCTATGCCCTTGGTCGTGCGGGAACCTC-GAGCACCATTGGCACCTTGGT
66 GACACCAT-CGACAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACAATCGGCACCTTGGT
35971967 GCT-TGGATGTGCGGGAGCCTCG
128 GCTAT-GATGTGCGGGAGCCTCG
35971989 AGCACCATCG
Statistics
Matches: 344, Mismatches: 13, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
211 299 0.87
212 45 0.13
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (211 bp):
TGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCG
GACACCATCGACAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACAATCGGCACCTTGGTGCT
ATGATGTGCGGGAGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGC
ACCATTGGCACCTTGG
Found at i:35971810 original size:127 final size:127
Alignment explanation
Indices: 35971579--35972028 Score: 538
Period size: 127 Copynumber: 3.6 Consensus size: 127
35971569 ACTGTCCGCA
* * * *
35971579 ACCTAGGCCCTTGG-TCGTGGGGGAACCTCGAGCACCATTGGCACCTTGGTGCTTGGATGTGCGG
1 ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGG
** * * ** * * * *
35971643 GAGCCTC-GAGCACCATCGGC-ACCTTGGTGCATGGAT-GTGCGGGAGCATCG-GACACCATCGA
65 GAGCCTCGGA-CACTGTCCGCAACCTAGGCCCTTGG-TCGTGCGGGAACCTCGAG-CACCATCGG
35971704 C
127 C
* * *
35971705 AAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACAATCGGCACCTTGGTGCTAT-GATGTGC
1 -ACCTAGGCCCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGC-ATGGATGTGC
*
35971767 GGGAGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCATTGGC
63 GGGAGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCATCGGC
* **
35971832 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGG
1 ACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGG
* *
35971897 AGCCTCGGACACTGTCCGCAACCTATGCCCTTGGTCGTGCGGGAACCTCGAGCACCATTGGC
66 AGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCATCGGC
* ** *
35971959 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGAGCGGG
1 ACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGG
35972024 AGCCT
66 AGCCT
35972029 TGAGCACCAA
Statistics
Matches: 289, Mismatches: 24, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
126 68 0.24
127 219 0.76
128 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (127 bp):
ACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGG
AGCCTCGGACACTGTCCGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCATCGGC
Found at i:35972276 original size:24 final size:24
Alignment explanation
Indices: 35972245--35972322 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
35972235 CCGGTTAGGT
* *
35972245 TCCCGGCGGTGCTCCGGCGATCTG
1 TCCCGGCGGTGCTCCGGCGAACCG
*
35972269 TCCTGGCGGTGCTCCGGCGAACCG
1 TCCCGGCGGTGCTCCGGCGAACCG
*
35972293 TCCCGTCGGTGCTCCGGCGAACCG
1 TCCCGGCGGTGCTCCGGCGAACCG
*
35972317 TTCCGG
1 TCCCGG
35972323 TAGCATAGGC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.06, C:0.38, G:0.36, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAACCG
Found at i:35972479 original size:42 final size:41
Alignment explanation
Indices: 35972345--35973014 Score: 254
Period size: 43 Copynumber: 15.8 Consensus size: 41
35972335 TTGGTCGTGT
* * *
35972345 GGGAGCCTCGGGCACCATCGGCACCTCTGTGCTAGGATGTGC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTAC
* * * * ** **
35972387 AGGAGCCCCGGACACCATCGGCAAACTAAGCCCTT--TGTCATGC
1 GGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGATGT-A--C
* * * *
35972430 AGGAGCCTTGGGCGCCTTCGGCACCTCGGTGCTTCGATGTAC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTAC
* *
35972472 GGGAGCCTCGGGCGCCATCGGCATCTCGGTGCTTCGATGTAC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTAC
* ** * *
35972514 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTAT
1 GGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTAC
* *
35972557 GGGAGCCTCGGGCACCACCGGCACCTCGGTGCTGTGATGTGC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTAC
* ** * ** * **
35972599 GGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGT
1 GGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTAC
* * *
35972642 GGGAGCCTCGAGCACCATCAGCACCGT-GGTGCTTGGATGTGC
1 GGGAGCCTCGGGCACCATCGGCACC-TCGGTGCTT-GATGTAC
* * ** * ** * *
35972684 GAGAACCTCACGCACCATCGGCAGCCTAGGCCCTTGGTCGTGC
1 GGGAGCCTCGGGCACCATCGGCA-CCTCGGTGCTTGAT-GTAC
* * * * * ** ** *
35972727 GAGAGGCTCGGGCACTATCAGCAAACTAAGCCCTT-AGTCGTGC
1 GGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGA-T-GTAC
* * * ** * ** * *
35972770 GGGAGACTCAGGCACCATCGGTAAAATAGGCCCTTGGTCGTGC
1 GGGAGCCTCGGGCACCATCGG-CACCTCGGTGCTTGAT-GTAC
* ** * *
35972813 AGGG-GCCTCGGCCACCATCGGCACCTC-GACCTTGGTCGTGC
1 -GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGAT-GTAC
* * *
35972854 GGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGAATGTGC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTTG-ATGTAC
* * * * * *
35972897 GGGTGCCTCGGGTAGCATCGGCACCTCGGTGGCTAGGAGGTGC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGT-GCT-TGATGTAC
* * * * * * *
35972940 GGGAGCCTCTGACACCATCGGCAACTTGGTACTTGGATCTGC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTAC
*
35972982 GGGAGCCTCGGGCACCCATCGGCACCTTGGTGC
1 GGGAGCCTCGGGCA-CCATCGGCACCTCGGTGC
35973015 CTGGGATGTG
Statistics
Matches: 482, Mismatches: 117, Indels: 57
0.73 0.18 0.09
Matches are distributed among these distances:
40 6 0.01
41 34 0.07
42 173 0.36
43 259 0.54
44 7 0.01
45 3 0.01
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.19
Consensus pattern (41 bp):
GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTAC
Found at i:35972561 original size:85 final size:84
Alignment explanation
Indices: 35972472--35973028 Score: 385
Period size: 85 Copynumber: 6.5 Consensus size: 84
35972462 TTCGATGTAC
* * *
35972472 GGGAGCCTCGGGCGCCATCGGCATCTCGGTGCTTCGATGTACGGGAGCCTCGGGCACCATCGGCA
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGCCTCGGGCACCATCGGCA
35972537 ACCTAGGCCCTTGGTCGTAT
65 ACCTAGGCCCTTGGTCGTAT
* * **
35972557 GGGAGCCTCGGGCACCACCGGCACCTCGGTGCTGTGATGTGCGGGAGCCTCGGACACTGTCGGCA
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCGGGAGCCTCGGGCACCATCGGCA
*
35972622 ACCTAGGCCCTTGGTCGTGT
65 ACCTAGGCCCTTGGTCGTAT
* * * * **
35972642 GGGAGCCTCGAGCACCATCAGCACCGT-GGTGCTTGGATGTGCGAGAACCTCACGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCACC-TCGGTGCTT-GATGTGCGGGAGCCTCGGGCACCATCGGC
* **
35972706 AGCCTAGGCCCTTGGTCGTGC
64 AACCTAGGCCCTTGGTCGTAT
* * * * * ** ** * *
35972727 GAGAGGCTCGGGCACTATCAGCAAACTAAGCCCTT-AGTCGTGCGGGAGACTCAGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGA-T-GTGCGGGAGCCTCGGGCACCATCGG
* **
35972791 TAAAATAGGCCCTTGGTCGTGCA-
63 CAACCTAGGCCCTTGGTCGT--AT
* ** *
35972814 GGG-GCCTCGGCCACCATCGGCACCTC-GACCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* ** * * **
35972876 ACCTTGGTGGCTCGAAT-GTGC
65 ACCTAGG-CCCTTG-GTCGTAT
* * * * * * *
35972897 GGGTGCCTCGGGTAGCATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCCTCTGACACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCACCTCGGT-GCT-TGATGTGCGGGAGCCTCGGGCACCATCGGC
* ** **
35972962 AA-CTTGGTACTTGGATC-TGC
64 AACCTAGGCCCTTGG-TCGTAT
* *
35972982 GGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGATGTGCGGG
1 GGGAGCCTCGGGCA-CCATCGGCACCTCGGTG-CT-TGATGTGCGGG
35973029 CTAAAGAAGA
Statistics
Matches: 373, Mismatches: 77, Indels: 43
0.76 0.16 0.09
Matches are distributed among these distances:
83 7 0.02
84 57 0.15
85 189 0.51
86 116 0.31
87 4 0.01
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.19
Consensus pattern (84 bp):
GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCTTGGTCGTAT
Found at i:35972621 original size:127 final size:126
Alignment explanation
Indices: 35972345--35972609 Score: 327
Period size: 127 Copynumber: 2.1 Consensus size: 126
35972335 TTGGTCGTGT
* * *
35972345 GGGAGCCTCGGGCACCATCGGCACCTCTGTGCTAGGATGTGCAGGAGCCCCGGACACCATCGGCA
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTACGATGTACAGGAGCCCCGGACACCATCGGCA
* * * **
35972410 AACTAAGCCCTTTGTCATGCAGGAGCCTTGGGCGCCTTCGGCACCTCGGTGCTTCGATGTAC
66 AACTAAGCCCTTGGTCATG-AGGAGCCTCGGGCACCACCGGCACCTCGGTGCTTCGATGTAC
* * * * * *
35972472 GGGAGCCTCGGGCGCCATCGGCATCTCGGTGCTTCGATGTACGGGAGCCTCGGGCACCATCGGCA
1 GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTACGATGTACAGGAGCCCCGGACACCATCGGCA
* * *
35972537 ACCTAGGCCCTTGGTCGTATG-GGAGCCTCGGGCACCACCGGCACCTCGGTGCTGT-GATGTGC
66 AACTAAGCCCTTGGTC--ATGAGGAGCCTCGGGCACCACCGGCACCTCGGTGCT-TCGATGTAC
35972599 GGGAGCCTCGG
1 GGGAGCCTCGG
35972610 ACACTGTCGG
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
127 114 0.97
128 1 0.01
129 3 0.03
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (126 bp):
GGGAGCCTCGGGCACCATCGGCACCTCGGTGCTACGATGTACAGGAGCCCCGGACACCATCGGCA
AACTAAGCCCTTGGTCATGAGGAGCCTCGGGCACCACCGGCACCTCGGTGCTTCGATGTAC
Found at i:35976399 original size:63 final size:63
Alignment explanation
Indices: 35976322--35977140 Score: 1638
Period size: 63 Copynumber: 13.0 Consensus size: 63
35976312 GAAATGCGAT
35976322 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976385 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976448 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976511 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976574 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976637 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976700 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976763 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976826 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976889 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35976952 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35977015 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35977078 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
1 ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
35977141 CCATTAGGCC
Statistics
Matches: 756, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 756 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (63 bp):
ACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAG
Found at i:35981468 original size:42 final size:41
Alignment explanation
Indices: 35981356--35981681 Score: 235
Period size: 42 Copynumber: 7.7 Consensus size: 41
35981346 GAGCCTCCAT
* *
35981356 CACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGACACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCAG-CACCATCGG
* * *
35981399 AAACCTTGATGCTTGGATGTGCGGGAGCCTCAAGCACCAACGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTC-AGCACCATCGG
* * *
35981442 CACCTCGGTGCATGGATGTGCGGGAGCATCAGACACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCAG-CACCATCGG
* * * ** * * * *
35981484 TAAACTAGGCCCTTAGTTTTG-GGGAGCCTCGGAG-ACCATCGA
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTC--AGCACCATCGG
* ** * **
35981526 CACCTCGGTGCTACGATGTGCGGGAGCCTCGGACACTGTCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCAG-CACCATCGG
* ** * *
35981568 CAACCTAGGCCCTTGG-TCGTGTGGGAACCTCGAGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-AGCACCATCGG
*
35981611 TACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTC-AGCACCATCGG
* *
35981653 CACCTTGGTGCATGGATGAGCGGGAGCCT
1 CACCTTGGTGCTTGGATGTGCGGGAGCCT
35981682 TGAGCAGCAA
Statistics
Matches: 216, Mismatches: 54, Indels: 26
0.73 0.18 0.09
Matches are distributed among these distances:
40 1 0.00
41 13 0.06
42 124 0.57
43 66 0.31
44 12 0.06
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (41 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCAGCACCATCGG
Found at i:35981653 original size:85 final size:83
Alignment explanation
Indices: 35981356--35981654 Score: 287
Period size: 85 Copynumber: 3.5 Consensus size: 83
35981346 GAGCCTCCAT
* * * * * ***
35981356 CACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGACACCATCGGAAACCTTGATGCTTGGATGTGC
1 CACCTCGGT-GCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGG-TGTG-
* *
35981421 GGGAGCCTCAAGCACCAACGG
63 GGGAGCCTCGAGCACCATCGG
* * * * * *
35981442 CACCTCGGTGCATGGATGTGCGGGAGCATCAGACACCATCGGTAAACTAGGCCCTTAGTTTTGGG
1 CACCTCGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTT-GGTGTGGG
*
35981507 GAGCCTCGGAG-ACCATCGA
65 GAGCCTC-GAGCACCATCGG
** * **
35981526 CACCTCGGTGCTACGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGTG
1 CACCTCGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGT-GTG-G
*
35981591 GGAACCTCGAGCACCATCGG
64 GGAGCCTCGAGCACCATCGG
* *
35981611 TACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCA
1 CACCTCGGTGCTTGGATGTGCGGGAGCCTCAGA-CACCATCGGCA
35981655 CCTTGGTGCA
Statistics
Matches: 172, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
83 2 0.01
84 69 0.40
85 92 0.53
86 9 0.05
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (83 bp):
CACCTCGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTGTGGGG
AGCCTCGAGCACCATCGG
Found at i:35982131 original size:85 final size:84
Alignment explanation
Indices: 35981982--35982489 Score: 511
Period size: 85 Copynumber: 6.0 Consensus size: 84
35981972 TCCGGTAGCA
* * *
35981982 TAGGCCCTTGGTCGTGCGGAAGCCTCAGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGG-AGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
35982047 CCCGGACACCATCGGCAAAC
65 CTCGGACACCATCGGCAACC
* * * * *
35982067 TAAGCCCTTGGTCATGCAGGAGCCGCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
35982132 CTCGGGCCCCATCGGCAACC
65 CTCGGACACCATCGGCAACC
** *
35982152 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTGCTAT-GATGTACGGGAG
1 TAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGGATGTGCGGGAG
**
35982216 CCTCGGACACTGTCGGCAACC
64 CCTCGGACACCATCGGCAACC
* * * * *
35982237 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCACCGGCACCTTGGTGCTTGGATGTGCGAGAAC
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
*
35982302 CTCGCG-CACCATCGGCAGCC
65 CTCG-GACACCATCGGCAACC
* * * * ** ** *
35982322 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGG-TCGTGCGGTA
1 TAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGGA
* **
35982386 GCCTCAGG-CACCATCGGTAAAA
63 GCCTC-GGACACCATCGGCAACC
* * ** *
35982408 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGGCCCTTGGTTGTGCGGGAGC
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
35982473 CTCGGGCACCAGCGGCA
65 CTCGGACACCATCGGCA
35982490 CCTTGGTGGC
Statistics
Matches: 350, Mismatches: 60, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
84 5 0.01
85 275 0.79
86 68 0.19
87 2 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:35982179 original size:43 final size:43
Alignment explanation
Indices: 35981982--35982489 Score: 380
Period size: 43 Copynumber: 11.9 Consensus size: 43
35981972 TCCGGTAGCA
*
35981982 TAGGCCCTTGGTCGTGCG-GAAGCCTCAGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGAG-AGCCTCGGGCACCATCGGCAACC
* ** * * * *
35982024 TCGGTGCTAGGAT-GTGC-AGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGA-GAGCCTCGGGCACCATCGGCAACC
* * * *
35982067 TAAGCCCTTGGTCATGC-AGGAGCCGCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCAACC
* ** * * *
35982109 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCCCCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC
35982152 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * * * **
35982194 TTAGTG--CTATGAT-GTACGGGAGCCTCGGACACTGTCGGCAACC
1 -TAG-GCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * *
35982237 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCACCGGC-ACC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* ** * * *
35982279 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGCACCATCGGCAGCC
1 TAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * * *
35982322 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAAC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * * **
35982365 TAAGCCCTTGGTCGTGCG-GTAGCCTCAGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGAG-AGCCTCGGGCACCATCGGCAACC
* * *
35982408 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * * *
35982450 TCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
35982490 CCTTGGTGGC
Statistics
Matches: 361, Mismatches: 83, Indels: 43
0.74 0.17 0.09
Matches are distributed among these distances:
41 1 0.00
42 160 0.44
43 198 0.55
44 2 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC
Found at i:35982278 original size:170 final size:170
Alignment explanation
Indices: 35981982--35982674 Score: 633
Period size: 170 Copynumber: 4.0 Consensus size: 170
35981972 TCCGGTAGCA
* ** * *
35981982 TAGGCCCTTGGTCGTGCG-GAAGCCTCAGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGAG-AGCCTCGGGCACCATCGGCACCTTAGTGCTATGATGTGCGGGAG
* * * * * * *
35982046 CCCCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCGCGGGCGCCATCGGCACCTC
65 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTC
*
35982111 GGTGCTTCGATGTGCGGGAGCCTCGGGCCCCATCGGCAACC
130 GGTGCTTGGATGTGCGGGAGCCTCGGGCCCCATCGGCAACC
*
35982152 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTGCTATGATGTACGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTGCTATGATGTGCGGGAGC
** * * *
35982217 CTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCACCGGCACCTT
66 CTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCACCTC
* * * * *
35982281 GGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAGCC
130 GGTGCTTGGATGTGCGGGAGCCTCGGGCCCCATCGGCAACC
* * * * * ** * *
35982322 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCCCT-TGGTCGTGCGGTA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTAGTGCTATGAT-GTGCGGGA
* * * *
35982386 GCCTCAGG-CACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGCACC
64 GCCTC-GGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACC
** * *
35982450 TCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCAACC
128 TCGGTGCTTGGATGTGCGGGAGCCTCGGG--CC--C--CA---T--CGG--CAACC
* * * * *
35982506 TCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCA-GATGTGCGGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGT-GCT-ATGATGTGCGGGA
* * * * ** * ** *
35982570 GCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAAC
64 GCCTCGGACACCATCGGCAAACTAGG-CCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACC
*
35982634 TTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCCATCGGCA
128 TCGGTGCTTGGATGTGCGGGAGCCTCGGGC-CCCATCGGCA
35982675 CCTTGGTGCT
Statistics
Matches: 414, Mismatches: 84, Indels: 48
0.76 0.15 0.09
Matches are distributed among these distances:
169 1 0.00
170 181 0.44
171 87 0.21
172 5 0.01
173 1 0.00
174 2 0.00
175 1 0.00
176 1 0.00
177 2 0.00
179 2 0.00
180 1 0.00
181 1 0.00
182 3 0.01
183 11 0.03
184 113 0.27
185 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (170 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTGCTATGATGTGCGGGAGC
CTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTCG
GTGCTTGGATGTGCGGGAGCCTCGGGCCCCATCGGCAACC
Found at i:35982305 original size:42 final size:42
Alignment explanation
Indices: 35981995--35982697 Score: 323
Period size: 43 Copynumber: 16.2 Consensus size: 42
35981985 GCCCTTGGTC
* * * *
35981995 GTGCGGAAGCCTCAGGCACCATCGGCACCTCGGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
* * * * * **
35982037 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT
* * * * * *
35982079 CATGCAGGAGCCGCGGGCGCCATCGGCACCTCGGTGCTTCGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
* **
35982122 GTGCGGGAGCCTCGGGCCCCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT
*
35982164 CGTGCGAGAGCCTCGGGCACCATCGGCACCTTA-GTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACC-TAGGTGCT-TGGAT
* * ** **
35982207 GTACGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT
* * *
35982249 CGTGCGGGAGCCTCGAGCACCACCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
* * * **
35982292 GTGCGAGAACCTCGCGCACCATCGGCAGCCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTGGAT
* * * * * * **
35982334 CGTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT
* * * ** **
35982377 CGTGCGGTAGCCTCAGGCACCATCGGTAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTGGAT
* * * ** *
35982420 CGTGCGGGGGCCTCGGCCACCATCGGCACCTCGGCCCTTGGTT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
* * *
35982463 GTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCAACCTCGGCCCT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT-GCT-----T-GG--AT
* * * * * * **
35982514 -TG-GTTGTG-C-GGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCAGAT
1 GTGCG-GGAGCCTCGG-G-CAC---CA---TCGGCACCTAGGT-GCTTGGAT
* * * *
35982562 GTGCGGGAGCCTCGGGCAGCATCGGCACCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT-GCTTGGAT
* * *
35982605 GTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
*
35982647 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCTTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTAGGTGCTT-GGAT
35982691 GTGCGGG
1 GTGCGGG
35982698 CTAAAGTAGA
Statistics
Matches: 507, Mismatches: 112, Indels: 82
0.72 0.16 0.12
Matches are distributed among these distances:
42 183 0.36
43 264 0.52
44 12 0.02
46 2 0.00
48 4 0.01
49 10 0.02
50 10 0.02
51 3 0.01
53 2 0.00
56 17 0.03
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.18
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
Found at i:35982456 original size:128 final size:125
Alignment explanation
Indices: 35982122--35982481 Score: 368
Period size: 128 Copynumber: 2.8 Consensus size: 125
35982112 GTGCTTCGAT
* *
35982122 GTGCGGGAGCCTCGGGCCCCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTC-GGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCAT
* * * * * * *
35982187 CGGCACCTTAGTG--CTATGATGTACGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
64 CGGCACC-TAG-GCCCT-TGGTGTGCGGGAGCCTCGGGCACTATCGACAAACTAAGCCCTTGGTC
* * * ** *
35982250 GTGCGGGAGCCTCGAGCACCACCGGCACCTTGGTGCTTGGAT-GTGCGAGAACCTC-GCGCACCA
1 GTGCGGGAGCCTCG-GCACCATCGGAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGC-CACCA
* *
35982313 TCGGCAGCCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCCCTTGGTC
63 TCGGCA-CCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACTATCGACAAACTAAGCCCTTGGTC
* ** * *
35982378 GTGCGGTAGCCTCAGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGGGAGCCTC-GGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCAT
*
35982443 CGGCACCTCGGCCCTTGGTTGTGCGGGAGCCTCGGGCAC
64 CGGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCAC
35982482 CAGCGGCACC
Statistics
Matches: 189, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
126 2 0.01
127 41 0.22
128 112 0.59
129 32 0.17
130 2 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (125 bp):
GTGCGGGAGCCTCGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCG
GCACCTAGGCCCTTGGTGTGCGGGAGCCTCGGGCACTATCGACAAACTAAGCCCTTGGTC
Found at i:35982533 original size:56 final size:56
Alignment explanation
Indices: 35982447--35982558 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
35982437 CACCATCGGC
35982447 ACCTCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCA
1 ACCTCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCA
35982503 ACCTCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCA
1 ACCTCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCA
35982559 GATGTGCGGG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.11, C:0.34, G:0.36, T:0.20
Consensus pattern (56 bp):
ACCTCGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCAGCGGCACCTTGGTGGCTCA
Found at i:35989650 original size:33 final size:33
Alignment explanation
Indices: 35989608--35989673 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
35989598 GCCACGAGCT
*
35989608 CCATCGACAACTTCAGCCCTTGTTGGTGCGGAA
1 CCATCGACAACTTCAGCCCCTGTTGGTGCGGAA
*
35989641 CCATCGACAACTTCGGCCCCTGTTGGTGCGGAA
1 CCATCGACAACTTCAGCCCCTGTTGGTGCGGAA
35989674 GCATTGGGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.20, C:0.32, G:0.26, T:0.23
Consensus pattern (33 bp):
CCATCGACAACTTCAGCCCCTGTTGGTGCGGAA
Found at i:35990222 original size:42 final size:42
Alignment explanation
Indices: 35990118--35990452 Score: 234
Period size: 42 Copynumber: 7.9 Consensus size: 42
35990108 GAGCCTCCAT
* *
35990118 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGACACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
35990161 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
** * *
35990204 CACCTTGGTGGATGGATGTGCGGGAGCATCG-GACACCATCGA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * * *
35990246 CAAACTAGGCCCTTGGTTGTG-GGAAGCGTCGGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
* * * * ** *
35990288 CAACTCGGTGCTAT-GATGTACAGGAGCCTC-AGACACTGTAGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCGG
* ** * *
35990330 CGACCTAGGCCCTTGG-TCGTACGGGAACCTCGAGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
* *
35990373 CACCTTAGTGCTTGAATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * * *
35990415 CACCTTGATGCATGGATGAGCGGGAGCCTTGAGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCA
35990453 AAGCTAAAGT
Statistics
Matches: 224, Mismatches: 53, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
40 2 0.01
41 13 0.06
42 129 0.58
43 68 0.30
44 12 0.05
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:35990695 original size:24 final size:24
Alignment explanation
Indices: 35990668--35990780 Score: 91
Period size: 24 Copynumber: 4.7 Consensus size: 24
35990658 GTTCCCGGTA
* *
35990668 GTGCTCCAGTGATCCGTCCCGGCG
1 GTGCTCCAGCGAACCGTCCCGGCG
* *
35990692 GTGCTCCGGCGAACCGTCCCGTCG
1 GTGCTCCAGCGAACCGTCCCGGCG
* ***
35990716 GTGCTCCGGCGAACCGTCCTATCG
1 GTGCTCCAGCGAACCGTCCCGGCG
* * * **
35990740 GTGCTCCGGTGAATCGTCCCGTTG
1 GTGCTCCAGCGAACCGTCCCGGCG
* *
35990764 ATGCTCCGGCGAACCGT
1 GTGCTCCAGCGAACCGT
35990781 TCTGGTAGCA
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 75 1.00
ACGTcount: A:0.11, C:0.36, G:0.32, T:0.21
Consensus pattern (24 bp):
GTGCTCCAGCGAACCGTCCCGGCG
Found at i:35990733 original size:48 final size:48
Alignment explanation
Indices: 35990681--35990780 Score: 137
Period size: 48 Copynumber: 2.1 Consensus size: 48
35990671 CTCCAGTGAT
* *
35990681 CCGTCCCGGCGGTGCTCCGGCGAACCGTCCCGTCGGTGCTCCGGCGAA
1 CCGTCCCAGCGGTGCTCCGGCGAACCGTCCCGTCGATGCTCCGGCGAA
* * * * *
35990729 CCGTCCTATCGGTGCTCCGGTGAATCGTCCCGTTGATGCTCCGGCGAA
1 CCGTCCCAGCGGTGCTCCGGCGAACCGTCCCGTCGATGCTCCGGCGAA
35990777 CCGT
1 CCGT
35990781 TCTGGTAGCA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.10, C:0.38, G:0.32, T:0.20
Consensus pattern (48 bp):
CCGTCCCAGCGGTGCTCCGGCGAACCGTCCCGTCGATGCTCCGGCGAA
Found at i:35990911 original size:85 final size:85
Alignment explanation
Indices: 35990794--35991468 Score: 493
Period size: 85 Copynumber: 7.9 Consensus size: 85
35990784 GGTAGCATAG
*
35990794 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGCCCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGCCTC
*
35990859 GGACACCATCGGCAAACTAA
66 GGACACCATCGGCAACCTAA
* * * * * ** *
35990879 GCCCTTAGTCATGCAGGAGCCTCGGGCGCCATCGGTACCTCGGTGCTTCGATGTGCGGGAGCCTC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGCCTC
* * *
35990944 GGGCACCATCGACAACCTAG
66 GGACACCATCGGCAACCTAA
* * *
35990964 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGATATGATGTG-AGGGAGCTT
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAGGATGTGCA-GGAGCCT
** *
35991028 CGGACACTGTCGGCAACCTAG
65 CGGACACCATCGGCAACCTAA
* * ** * * *
35991049 GCCCTTGGTCGTGCGGGAGCTTCGAGCACCATCGGCAGTTTGGTGCTTGGATGTGC-GAGAACCT
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAG-GAGCCT
*
35991113 CGCG-CACCATCGGCAGCCTAA
65 CG-GACACCATCGGCAACCTAA
* * * * * * *** *
35991134 GCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCCCCT-GG-TCGTGCGGGAGC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT-CGGTGCTAGGAT-GTGCAGGAGC
* * ** *
35991197 CTCGGGCACCATCGGTAAAATAG
63 CTCGGACACCATCGGCAACCTAA
* ** * ** * * *
35991220 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGG-TCGTGCGGGGGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTCGGTGCTAGGAT-GTGCAGGAGCC
* * **
35991284 TCAGCCACCATCGGC-ACCTCG
64 TCGGACACCATCGGCAACCTAA
* * * **
35991305 GCTCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCT
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTAGGATGTGCAGGAGCCT
** ** **
35991370 CGGGTAGTATCGGC-ACCTCG
65 CGGACACCATCGGCAACCTAA
** * ** * * * * * *
35991390 GTAGCTAGGAGGTGCGGGAGCCTCAGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCT
1 G-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGCCT
*
35991455 CGGGCACCCATCGG
65 CGGACA-CCATCGG
35991469 TACCTTGATG
Statistics
Matches: 474, Mismatches: 101, Indels: 29
0.78 0.17 0.05
Matches are distributed among these distances:
84 5 0.01
85 336 0.71
86 129 0.27
87 4 0.01
ACGTcount: A:0.16, C:0.30, G:0.35, T:0.19
Consensus pattern (85 bp):
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGCCTC
GGACACCATCGGCAACCTAA
Found at i:35990989 original size:43 final size:43
Alignment explanation
Indices: 35990791--35991468 Score: 475
Period size: 43 Copynumber: 15.9 Consensus size: 43
35990781 TCTGGTAGCA
35990791 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
35990833 TCGGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * *
35990876 TAAGCCCTTAGTCATGCAGGAGCCTCGGGCGCCATCGG-TACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
35990918 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGACAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
35990961 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *** * * * * **
35991003 TCGGTGATATGAT-GTGAGGGAGCTTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
35991046 TAGGCCCTTGGTCGTGCGGGAGCTTCGAGCACCATCGGC-AGT
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
35991088 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGCACCATCGGCAGCC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * *
35991131 TAAGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * **
35991174 TAAGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
35991217 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
35991260 TAGGCCCTTGGTCGTGCGGGGGCCTCAGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
35991302 TCGGCTCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
35991344 TTGGTGGCTCGGAT-GTGTGGGAGCCTCGGGTAGTATCGGC-ACC
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * ** * *
35991387 TCGGTAGCTAGGAGGTGCGGGAGCCTCAGACACCATCGGCAA-C
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
35991430 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGG
35991469 TACCTTGATG
Statistics
Matches: 495, Mismatches: 123, Indels: 35
0.76 0.19 0.05
Matches are distributed among these distances:
42 186 0.38
43 307 0.62
44 2 0.00
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:35991382 original size:128 final size:128
Alignment explanation
Indices: 35990797--35991493 Score: 344
Period size: 128 Copynumber: 5.4 Consensus size: 128
35990787 AGCATAGGCC
* * * * *
35990797 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTG-CTAGGATGTGCAGGAGCCCCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGTGCCTCGGATGTGCGGGAGCCTCGG
* * * * * * * * * * * *
35990861 ACACCATCGGCAAACTAAG-CCCTTA-GTCATGCAGGAGCCTCGGGCGCCATCGGTACCTCGGTG
66 GCACCATCGG-AAAATAGGTACC-TAGGACGTGCGGGAGCCTCAGACACCATCGGCAACTCGGTG
* * * * *
35990924 CTTCGAT-GTGCGGGAGCCTCGGGCACCATCGACAACCTAGG-CCCTTGG-TCGTGCGGGAGCCT
1 CTT-GGTCGTGCGGGAGCCTCGGGCACCATCG-GAACCTTGGTGCCTCGGAT-GTGCGGGAGCCT
* ** * * * * * * ** *
35990986 CGGGCACCATCGGCACCTCGGTGA--TATGATGTGAGGGAGCTTCGGACACTGTCGGCAACCTAG
63 CGGGCACCATCGGAAAATAGGT-ACCTAGGACGTGCGGGAGCCTCAGACACCATCGGCAA-CTCG
**
35991049 GCC
126 GTG
* * * ** * * * *
35991052 CTTGGTCGTGCGGGAGCTTCGAGCACCATCGGCAGTTTGGTG-CTTGGATGTGCGAGAACCTCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGTGCCTCGGATGTGCGGGAGCCTCGG
*** * * * * * * * * * * ** **
35991116 GCACCATCGGCAGCCTAAG-CCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGACAAACTAAGCC
66 GCACCATCGG-AAAATAGGTACCTAGGACGTGCGGGAGCCTCAGACACCATCGGC-AACTCGGTG
* ** * * *
35991180 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGG-CCCTTGG-TCGTGCGGGAGCCTC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTTGGTGCCTCGGAT-GTGCGGGAGCCTC
* * * * * *
35991243 GGGCACCATCGGTAAAATAGG-CCCTTGGTCGTGCGGGGGCCTCAGCCACCATCGGCACCTCGGC
64 GGGCACCATCGG-AAAATAGGTACCTAGGACGTGCGGGAGCCTCAGACACCATCGGCAACTCGG-
35991307 T-
127 TG
* * *
35991308 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGTGCCTCGGATGTGCGGGAGCCTCGG
* ** * ** * * * *
35991373 GTAGTATCGGCACCTCGGTAGCTAGGAGGTGCGGGAGCCTCAGACACCATCGGCAACTTGGTG
66 GCACCATCGGAAAATAGGTACCTAGGACGTGCGGGAGCCTCAGACACCATCGGCAACTCGGTG
* * *
35991436 CTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGTACCTTGATGCCTGGGATGTGCGGG
1 CTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGAACCTTGGTGCCTCGGATGTGCGGG
35991494 CTAAAGAAGA
Statistics
Matches: 430, Mismatches: 115, Indels: 48
0.73 0.19 0.08
Matches are distributed among these distances:
126 2 0.00
127 93 0.22
128 241 0.56
129 94 0.22
ACGTcount: A:0.16, C:0.30, G:0.35, T:0.19
Consensus pattern (128 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGTGCCTCGGATGTGCGGGAGCCTCGG
GCACCATCGGAAAATAGGTACCTAGGACGTGCGGGAGCCTCAGACACCATCGGCAACTCGGTG
Found at i:35992083 original size:43 final size:43
Alignment explanation
Indices: 35992022--35992108 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
35992012 TTGGCTCGAC
* *
35992022 CAAGTCTCGGTGGGACTTTTCCCCTCGTAGTTCTCGTGCTAAG
1 CAAGTCCCGGTGGGACTTTTCCCCTCGTAGTTCTCGTGCCAAG
*
35992065 CAAGTCCCGGTGGGACTTTTCCCCTCGTAGTTCTCTTGCCAAG
1 CAAGTCCCGGTGGGACTTTTCCCCTCGTAGTTCTCGTGCCAAG
35992108 C
1 C
35992109 GGTTGTGCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.14, C:0.31, G:0.24, T:0.31
Consensus pattern (43 bp):
CAAGTCCCGGTGGGACTTTTCCCCTCGTAGTTCTCGTGCCAAG
Found at i:35999118 original size:42 final size:42
Alignment explanation
Indices: 35999014--35999297 Score: 295
Period size: 42 Copynumber: 6.7 Consensus size: 42
35999004 GAGCCTCCAT
*
35999014 CACCTTGGTGGCTTGGATGTGTGGGAGCCTC-AGACACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA-ACACCATCGG
* *
35999057 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
* * * *
35999100 CACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCATTGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
* * * *
35999142 CACCTCGGTG-TTATGATGTGCGGGAGCCTCGGACACTATCGG
1 CACCTTGGTGCTT-GGATGTGCGGGAGCCTCGAACACCATCGG
* ** * * *
35999184 CAACCTAGGCCCTTGG-TCGTGTGGGAACCTCGAGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGG
* * *
35999227 CACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
* *
35999269 CACCTTGGTGCATGGATGAGCGGGAGCCT
1 CACCTTGGTGCTTGGATGTGCGGGAGCCT
35999298 TGAGTACCAA
Statistics
Matches: 199, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 129 0.65
43 59 0.30
44 10 0.05
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
Found at i:35999255 original size:85 final size:86
Alignment explanation
Indices: 35999027--35999297 Score: 261
Period size: 85 Copynumber: 3.2 Consensus size: 86
35999017 CTTGGTGGCT
* * *
35999027 TGGATGTGTGGGAGCCTC-AGACACCATCGGTAACCTTGATGCTTGGATGTGCGGGAGCCTCGAA
1 TGGATGTGTGGGAGCCTCGAGACACCATCGG-CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
* **
35999091 CACCATCGGC-ACCTTGGTGCA
65 CACCATCGGCAACCTAGGCCCA
* * * * *
35999112 TGGATGTGCGGGAGCATCG-GACACCATTGGCACCTCGGTG-TTATGATGTGCGGGAGCCTCGGA
1 TGGATGTGTGGGAGCCTCGAGACACCATCGGCACCTTGGTGCTT-GGATGTGCGGGAGCCTCGGA
* *
35999175 CACTATCGGCAACCTAGGCCCT
65 CACCATCGGCAACCTAGGCCCA
* * *
35999197 TGG-TCGTGTGGGAACCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTACGAGAGCCTC-GA
1 TGGAT-GTGTGGGAGCCTCGAGACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
* **
35999259 GCACCATCGGC-ACCTTGGTGCA
65 -CACCATCGGCAACCTAGGCCCA
* *
35999281 TGGATGAGCGGGAGCCT
1 TGGATGTGTGGGAGCCT
35999298 TGAGTACCAA
Statistics
Matches: 149, Mismatches: 29, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
83 2 0.01
84 56 0.38
85 88 0.59
86 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (86 bp):
TGGATGTGTGGGAGCCTCGAGACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
ACCATCGGCAACCTAGGCCCA
Found at i:35999264 original size:127 final size:127
Alignment explanation
Indices: 35999027--35999297 Score: 323
Period size: 127 Copynumber: 2.1 Consensus size: 127
35999017 CTTGGTGGCT
* * * ** *
35999027 TGGATGTGTGGGAGCCTCAGACACCATCGGTAACCTTGATGCTTGGATGTGCGGGAGCCTCGAAC
1 TGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGACCCTTGGATGTGCGGGAACCTCGAAC
* * * *
35999092 ACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCATTGGCACCTCGGTGTTA
66 ACCATCGGCACCTTGGTGCATGGATGTACGAGAGCATCGGACACCATCGGCACCTCGGTG-CA
* * * * *
35999155 T-GATGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGG-TCGTGTGGGAACCTCGAG
1 TGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGACCCTTGGAT-GTGCGGGAACCTCGAA
* * *
35999218 CACCATCGGCACCTTGGTGCTTGGATGTACGAGAGCCTC-GAGCACCATCGGCACCTTGGTGCA
65 CACCATCGGCACCTTGGTGCATGGATGTACGAGAGCATCGGA-CACCATCGGCACCTCGGTGCA
*
35999281 TGGATGAGCGGGAGCCT
1 TGGATGTGCGGGAGCCT
35999298 TGAGTACCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
126 5 0.04
127 115 0.95
128 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (127 bp):
TGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGACCCTTGGATGTGCGGGAACCTCGAAC
ACCATCGGCACCTTGGTGCATGGATGTACGAGAGCATCGGACACCATCGGCACCTCGGTGCA
Found at i:35999586 original size:24 final size:23
Alignment explanation
Indices: 35999515--35999587 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
35999505 CCAGTTAGGT
* *
35999515 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCC-GCGGTGCTCCGGTGAACCA
* *
35999539 TCCCAGCGGTGCTTCGGTGTACCA
1 TCCC-GCGGTGCTCCGGTGAACCA
*
35999563 TCCCGTCGGTGCTCCGGCGAACCA
1 TCCCG-CGGTGCTCCGGTGAACCA
35999587 T
1 T
35999588 TCCGGTAGCA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 1 0.03
24 39 0.98
ACGTcount: A:0.10, C:0.37, G:0.32, T:0.22
Consensus pattern (23 bp):
TCCCGCGGTGCTCCGGTGAACCA
Found at i:35999663 original size:42 final size:42
Alignment explanation
Indices: 35999611--35999773 Score: 137
Period size: 42 Copynumber: 3.9 Consensus size: 42
35999601 GCCCTTGGTC
* * * *
35999611 GTGCGGGAGCCTTGGGCACCATCGGCACCTCGGTGCTAGGAT
1 GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGCTTGGAT
* ** ** *
35999653 GTGCAGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTT
1 GTGCAGGAGCCTCGGACACCATCGGC-ACCTCGGTGCTTGGAT
* * * * * * *
35999696 ATGCAGGAGCCTTGGGCGCCATCGACACTTCGGTGCTTCGAT
1 GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGCTTGGAT
* * *
35999738 GTGCGGGAGCCTCGGACGCCATCGGCATCTCGGTGC
1 GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGC
35999774 GGGCGTCGGG
Statistics
Matches: 90, Mismatches: 30, Indels: 2
0.74 0.25 0.02
Matches are distributed among these distances:
42 60 0.67
43 30 0.33
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.20
Consensus pattern (42 bp):
GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGCTTGGAT
Found at i:35999747 original size:85 final size:85
Alignment explanation
Indices: 35999601--35999764 Score: 238
Period size: 85 Copynumber: 1.9 Consensus size: 85
35999591 GGTAGCATAG
* * * *
35999601 GCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGCCTC
1 GCCCTTGGTCATGCAGGAGCCTTGGGCACCATCGACACCTCGGTGCTACGATGTGCAGGAGCCTC
35999666 GGACACCATCGGCAAACTAA
66 GGACACCATCGGCAAACTAA
* * * * *
35999686 GCCCTTGGTTATGCAGGAGCCTTGGGCGCCATCGACACTTCGGTGCTTCGATGTGCGGGAGCCTC
1 GCCCTTGGTCATGCAGGAGCCTTGGGCACCATCGACACCTCGGTGCTACGATGTGCAGGAGCCTC
*
35999751 GGACGCCATCGGCA
66 GGACACCATCGGCA
35999765 TCTCGGTGCG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (85 bp):
GCCCTTGGTCATGCAGGAGCCTTGGGCACCATCGACACCTCGGTGCTACGATGTGCAGGAGCCTC
GGACACCATCGGCAAACTAA
Found at i:36003536 original size:42 final size:42
Alignment explanation
Indices: 36003448--36003724 Score: 226
Period size: 42 Copynumber: 6.5 Consensus size: 42
36003438 GGTGGCTCGA
* * * * * *
36003448 ATGTGTGGGAGCCTC-AGACACCATCGGTAACCTTGATGCTTAG
1 ATGTGCGGGAGCCTCGAG-CACCATCGG-CACCTTGGTCCATGG
36003491 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGG
1 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGG
* * * * *
36003533 ATGTGCGGGAGCATCG-GACACCATCGGCAAACTAGGCCCTTGG
1 ATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTCCATGG
* * * *
36003576 TTGTG-GGGAGCCTCGGAG-ACCATCTGCACCTCGGTGCTAT-G
1 ATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGT-CCATGG
* * * *
36003617 ATGTGTGGGAGCCTCG-GACACTATCGGCAACCTAGG-CCGTTGG
1 ATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTCC-ATGG
*
36003660 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGG
1 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGG
* *
36003702 ATGAGCGGGAGCCTTGAGCACCA
1 ATGTGCGGGAGCCTCGAGCACCA
36003725 AAGCTAAAGT
Statistics
Matches: 188, Mismatches: 32, Indels: 29
0.76 0.13 0.12
Matches are distributed among these distances:
40 1 0.01
41 13 0.07
42 100 0.53
43 70 0.37
44 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.20
Consensus pattern (42 bp):
ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGG
Found at i:36003606 original size:84 final size:85
Alignment explanation
Indices: 36003490--36003713 Score: 310
Period size: 84 Copynumber: 2.6 Consensus size: 85
36003480 TTGATGCTTA
36003490 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGACACC
1 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGACACC
36003555 ATCGGCAAACTAGGCCCTTG
66 ATCGGCAAACTAGGCCCTTG
* * * * * *
36003575 GTTGTG-GGGAGCCTCGGAG-ACCATCTGCACCTCGGTGCTAT-GATGTGTGGGAGCCTCGGACA
1 GATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGT-CCATGGATGTGCGGGAGCATCGGACA
* * *
36003637 CTATCGGCAACCTAGGCCGTTG
64 CCATCGGCAAACTAGGCCCTTG
* *
36003659 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGAGCGGGAGC
1 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGC
36003714 CTTGAGCACC
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
84 72 0.61
85 46 0.39
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.19
Consensus pattern (85 bp):
GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGACACC
ATCGGCAAACTAGGCCCTTG
Found at i:36003956 original size:24 final size:24
Alignment explanation
Indices: 36003929--36003991 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
36003919 CCGGTTAGGT
* * * *
36003929 TCCCGGCAGTGTTCCGGCGATCCG
1 TCCCGACAGTGCTCCAGCGAACCG
*
36003953 TCCCGACGGTGCTCCAGCGAACCG
1 TCCCGACAGTGCTCCAGCGAACCG
* *
36003977 TCCCGTCGGTGCTCC
1 TCCCGACAGTGCTCC
36003992 GGTGAACTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.10, C:0.41, G:0.30, T:0.19
Consensus pattern (24 bp):
TCCCGACAGTGCTCCAGCGAACCG
Found at i:36003998 original size:24 final size:24
Alignment explanation
Indices: 36003941--36003998 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
36003931 CCGGCAGTGT
*
36003941 TCCGGCGATCCGTCCCGACGGTGC
1 TCCGGCGAACCGTCCCGACGGTGC
* *
36003965 TCCAGCGAACCGTCCCGTCGGTGC
1 TCCGGCGAACCGTCCCGACGGTGC
*
36003989 TCCGGTGAAC
1 TCCGGCGAAC
36003999 TGTTCCGGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.12, C:0.40, G:0.31, T:0.17
Consensus pattern (24 bp):
TCCGGCGAACCGTCCCGACGGTGC
Found at i:36004123 original size:43 final size:43
Alignment explanation
Indices: 36004012--36004951 Score: 647
Period size: 43 Copynumber: 22.1 Consensus size: 43
36004002 TCCGGTAGCA
* *
36004012 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * *
36004054 TTGGTGCTAGGAT-GTGCAGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * * *
36004097 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *** * *
36004139 TCGATGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA-C
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * **
36004181 TCAGTG--CTATGAT-GTGCGGGAGCCTCGGCCACTGTCGGCAACC
1 T-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
*
36004224 TAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCAGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** * * * *
36004266 TTGGTGCTTAGAT-GTGCGAGAACCTCGCG-CACCATCGACAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCG-GACACCATCGGCAACC
* *
36004309 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA-C
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * ** *
36004351 TCGGTGCTATGAT-TTGCGGGAGCCTCGGACACTGTCGGCCACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *
36004394 TAGGCCCTTGGTCGTGCGGGAACCTCGCG-CACCATCGGTAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GACACCATCGGCAACC
* * *
36004437 TAGGCCCTTGGTCGTGCGAGAGGCTCAGG-CACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACC
* * * **
36004480 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
36004523 TAGGCCCTTGGTCGTGTGGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** * * *
36004565 TAGGTGCTGGGAT-GTCCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
36004608 TAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGG-AACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * ***
36004650 TCGGTGCTATGAT-GTGCGAGAGCCTCGGACATTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
36004693 TAGGCCGTTGGTCATGCGGGAGCCTC-GAGCACCATCGG-TACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** * * *
36004735 TTGGTGCTTGGAT-GTGCGGGAGCCTCCCG-TACCATCGGTAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCT-CGGACACCATCGGCAACC
* * * * *
36004778 TAGGCCCTTGGTCGTGTGAGAGGCTC-GAGCACCATTGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* * * **
36004821 TAAGCCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
36004864 TAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** * * *
36004906 TAGGTGCTGGGAT-GTACGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
36004949 TAG
1 TAG
36004952 TGTCATGGGT
Statistics
Matches: 690, Mismatches: 166, Indels: 83
0.73 0.18 0.09
Matches are distributed among these distances:
41 2 0.00
42 288 0.42
43 395 0.57
44 5 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
Found at i:36004162 original size:85 final size:84
Alignment explanation
Indices: 36004012--36004951 Score: 687
Period size: 85 Copynumber: 11.0 Consensus size: 84
36004002 TCCGGTAGCA
* * * *
36004012 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
36004077 CTCGGACACCATCGGCAAAC
65 CTCGGACACCATCGGCAAAC
* * * * * * *
36004097 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCCCCTCGATGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-GATGTGCGGGAGC
*
36004162 CTCGGGCACCATCGGC-AAC
65 CTCGGACACCATCGGCAAAC
* * ** ** *
36004181 TCAGTG--CTATGAT-GTGCGGGAGCCTCGGCCACTGTCGGCAACCTAGGCCCTTGGTCGTGCGG
1 T-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGG
* *
36004243 GAGCCTC-GAGCACCATCAGC-ACC
61 GAGCCTCGGA-CACCATCGGCAAAC
* ** * * * * * ** *
36004266 TTGGTGCTTAGAT-GTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGA
* *
36004330 GCCTCGGGCACCATCGG-TAAC
63 GCCTCGGACACCATCGGCAAAC
* ** * * * ** ** *
36004351 TCGGTGCTATGAT-TTGCGGGAGCCTCGGACACTGTCGGCCACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTGAT-GTGCGGGA
* * *
36004415 ACCTCGCG-CACCATCGGTAACC
63 GCCTCG-GACACCATCGGCAAAC
* * * * * ** *
36004437 TAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGAG
* * *
36004502 CCTCGGGCACCATCGGTAAAA
64 CCTCGGACACCATCGGCAAAC
* * * * *
36004523 TAGGCCCTTGGTCGTGTGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTCCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
36004588 CTCGGACACCATCGGCAAAC
65 CTCGGACACCATCGGCAAAC
* * * * *
36004608 TAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGAACCTCGGTGCTATGATGTGCGAGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
*** *
36004673 CTCGGACATTGTCGGCAACC
65 CTCGGACACCATCGGCAAAC
* * * * *
36004693 TAGGCCGTTGGTCATGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-GATGTGCGGGAGC
* * * *
36004758 CTCCCG-TACCATCGGTAACC
65 CT-CGGACACCATCGGCAAAC
* * * * * * * ** *
36004778 TAGGCCCTTGGTCGTGTGAGAGGCTCGAGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGAG
* * *
36004843 CCTAGGGCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAAAC
* * * * *
36004864 TAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTACGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
36004929 CTCGGACACCATCGGCAAAC
65 CTCGGACACCATCGGCAAAC
36004949 TAG
1 TAG
36004952 TGTCATGGGT
Statistics
Matches: 682, Mismatches: 147, Indels: 52
0.77 0.17 0.06
Matches are distributed among these distances:
83 1 0.00
84 32 0.05
85 479 0.70
86 170 0.25
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAAAC
Found at i:36004259 original size:127 final size:127
Alignment explanation
Indices: 36004025--36004677 Score: 373
Period size: 127 Copynumber: 5.1 Consensus size: 127
36004015 GCCTTTGGTC
* **
36004025 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAGGATGTGCAGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTCAGTGCTAGGATGTGCAGGAGCCTCGGACACCATC
* * * * *
36004090 GGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCCCCTCGATGCTTCGAT
66 GGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCAGCACCTCGATGCTTAGAT
* * * **
36004152 GTGCGGGAGCCTCGGGCACCATCGGCAACTCAGTGCTATGATGTGCGGGAGCCTCGGCCACTGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTCAGTGCTAGGATGTGCAGGAGCCTCGGACACCATC
* * * * * *
36004217 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCACCTTGGTGCTTAGAT
66 GGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCAGCACCTCGATGCTTAGAT
* * * * * * *
36004279 GTGCGAGAACCTCGCGCACCATCGACAAC-CTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTC-AGTG--CTAGGAT-GTGCAGGAGCCTCGGACAC
* ** ** * * * ** * * ***
36004341 CATCGG-TAACTCGGTGCTATGAT-TTGCGGGAGCCTCG-GACACTGTCGGCCACCTAGGCCCTT
62 CATCGGCAAACTAAGCCCT-TGGTCATGCAGGAGCCTCGAG-CACCATCAG-CACCTCGATGCTT
*
36004403 -GGT
124 AGAT
* * * * *
36004406 CGTGCGGGAACCTCGCGCACCATCGGTAAC-CTAG-GCCCTTGG-TCGTGC-GAGAGGCTCAGG-
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACTC-AGTG--CTAGGAT-GTGCAG-GAGCCTC-GGA
* * * * * ** * ***
36004466 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCT
59 CACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCAG-CACCTCGATGCT
*
36004531 T-GGT
123 TAGAT
* * ** * * *
36004535 CGTGTGGGAGCCTCGGCCACCATCGGCCCCT-AGGTGCTGGGATGTCCGGGAGCCTCGGACACCA
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACTCA-GTGCTAGGATGTGCAGGAGCCTCGGACACCA
* * * * * * *
36004599 TCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGAACCTCGGTGC-TATGAT
64 TCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCAGCACCTCGATGCTTA-GAT
*
36004663 GTGCGAGAGCCTCGG
1 GTGCGGGAGCCTCGG
36004678 ACATTGTCGG
Statistics
Matches: 425, Mismatches: 80, Indels: 42
0.78 0.15 0.08
Matches are distributed among these distances:
126 4 0.01
127 186 0.44
128 165 0.39
129 68 0.16
130 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.19
Consensus pattern (127 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACTCAGTGCTAGGATGTGCAGGAGCCTCGGACACCATC
GGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCAGCACCTCGATGCTTAGAT
Found at i:36004417 original size:128 final size:128
Alignment explanation
Indices: 36004012--36004901 Score: 614
Period size: 128 Copynumber: 7.0 Consensus size: 128
36004002 TCCGGTAGCA
* * * ** * *
36004012 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * * * * * **
36004075 GCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGG-CCCC
64 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
* *** * * *
36004139 TCGATGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA-CTCAGTG--CTATGAT-GTGCG
1 TAGGCCCTT-GGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCG
* ** * * *
36004199 GGAGCCTCGGCCACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCAG-
61 GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGA-CACCATCGGT
*
36004262 CACC
125 AACC
* ** * * *
36004266 TTGGTGCTTAGAT-GTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTT-GGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * ** * ** **
36004330 GCCTCGGGCACCATCGG-TAACTCGGTGCTATGAT-TTGCGGGAGCCTCGGACACTGTCGGCCAC
64 GCCTCGGGCACCATCGGCAAACTAGGCCCT-TGATCGTGCGGGAGCCTCGGACACCATCGGTAAC
36004393 C
128 C
* * * *
36004394 TAGGCCCTTGGTCGTGCGGGAACCTCGCGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * * **
36004459 GCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAA
65 CCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
* * * ** * *
36004523 TAGGCCCTTGGTCGTGTGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTCCGGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * * *
36004586 GCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGG-AACC
64 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
* ** * *** * *
36004650 TCGGTGCTATGAT-GTGCGAGAGCCTCGGACATTGTCGGCAACCTAGGCCGTTGGTCATGCGGGA
1 TAGGCCCT-TGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * * ** * *
36004714 GCCTCGAGCACCATCGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCTCCCG-TACCATCGGTAA
64 GCCTCGGGCACCATCGGCAAACTAGGCCCTT-GATCGTGCGGGAGCCT-CGGACACCATCGGTAA
36004776 CC
127 CC
* * * * *
36004778 TAGGCCCTTGGTCGTGTGAGAGGCTCGAGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * *
36004843 CCTAGGGCACCATCGGCAAAATAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGG
65 CCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGG
36004902 CCCCTAGGTG
Statistics
Matches: 596, Mismatches: 137, Indels: 58
0.75 0.17 0.07
Matches are distributed among these distances:
126 3 0.01
127 215 0.36
128 286 0.48
129 92 0.15
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.19
Consensus pattern (128 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
CTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
Found at i:36004791 original size:384 final size:382
Alignment explanation
Indices: 36004012--36004901 Score: 992
Period size: 384 Copynumber: 2.3 Consensus size: 382
36004002 TCCGGTAGCA
* * * * ** *
36004012 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAGGAT-GTGC-AGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGA-GA
* * * ****
36004075 GCCTC-GGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCCCC
64 GCCTCAGG-CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAAA
* ** * * *
36004139 TCGATGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGCAACTCAGTGCTATGATGTGCGGGAGC
128 TAGACCCTTCGATGTGCGGGAGCCTCGGCCACCATCGGCAACTCAGTGCTAGGATGTCCGGGAGC
* ** * * * * *
36004204 CTCGGCCACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCACCTTG
193 CTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGAGCACCATCAGAACCTCG
*
36004269 GTGCTTAGATGTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCT
258 GTGCTTAGATGTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCATGCGGGAGCCT
* * * *
36004334 CGGGCACCATCGGTAACTCGGTGCTATGATTTGCGGGAGCCTCGGACACTGTCGGCCACC
323 CGAGCACCATCGGTAACTCGGTGCTATGATGTGCGGGAGCCTCGGACACTATCGGCAACC
* *
36004394 TAGGCCCTTGGTCGTGCGGGAACCTCGCGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAG
*
36004459 GCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAAT
65 CCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AAAAT
* * * ** *
36004524 AGGCCCTT-GGTCGTGTGGGAGCCTCGGCCACCATCGGCCCCT-AGGTGCTGGGATGTCCGGGAG
129 AGACCCTTCGAT-GTGCGGGAGCCTCGGCCACCATCGGCAACTCA-GTGCTAGGATGTCCGGGAG
* *
36004587 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGAACCTC
192 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGAGCACCATCAGAACCTC
* *** * *
36004652 GGTGC-TATGATGTGCGAGAGCCTCG-GACATTGTCGGCAACCTAGGCCGTTGGTCATGCGGGAG
257 GGTGCTTA-GATGTGCGAGAACCTCGCG-CACCATCGACAACCTAGGCCCTTGGTCATGCGGGAG
* * * *
36004715 CCTCGAGCACCATCGGTACCTTGGTGCT-TGGATGTGCGGGAGCCTCCCGTAC-C-ATCGGTAAC
320 CCTCGAGCACCATCGGTAACTCGGTGCTAT-GATGTGCGGGAGCCT--CGGACACTATCGGCAAC
36004777 C
382 C
* * * * * * *
36004778 TAGGCCCTTGGTCGTGTGAGAGGCTCGAGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAG
* * * *
36004843 CCT-AGGGCACCATCGGCAAAATAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGG
65 CCTCA-GGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
36004902 CCCCTAGGTG
Statistics
Matches: 427, Mismatches: 68, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
382 36 0.08
383 77 0.18
384 309 0.72
385 1 0.00
386 4 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.19
Consensus pattern (382 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTAGGCCCTTGGTCGTGCGAGAGC
CTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAAATAG
ACCCTTCGATGTGCGGGAGCCTCGGCCACCATCGGCAACTCAGTGCTAGGATGTCCGGGAGCCTC
GGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGAGCACCATCAGAACCTCGGTG
CTTAGATGTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCATGCGGGAGCCTCGA
GCACCATCGGTAACTCGGTGCTATGATGTGCGGGAGCCTCGGACACTATCGGCAACC
Found at i:36005151 original size:22 final size:21
Alignment explanation
Indices: 36005121--36005179 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
36005111 ATACAATCGT
*
36005121 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
36005143 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
36005166 AGATTTGATTTGTA
1 AGATTTGATTTGTA
36005180 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:36010294 original size:21 final size:21
Alignment explanation
Indices: 36010265--36010322 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 21
36010255 ATACAATCGT
* *
36010265 AGATTTGATATGTACTCTTAG
1 AGATTTGATTTGTAATCTTAG
*
36010286 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
36010309 AGATTTGATTTGTA
1 AGATTTGATTTGTA
36010323 GATACCATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 8 0.26
22 9 0.29
23 14 0.45
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.45
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:36010796 original size:43 final size:43
Alignment explanation
Indices: 36010688--36011324 Score: 592
Period size: 43 Copynumber: 15.0 Consensus size: 43
36010678 GTCCGTGACA
* * * *
36010688 CTAGGCCCTTGGTGGTGCGAGAGCCTCGAGCACCATCAGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * * * **
36010730 CTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAAC
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
36010773 CTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * *
36010815 CTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGTAAC
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * *
36010858 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * * * *
36010901 CTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * *
36010944 ATAGGCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
36010986 CTCGACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *** * * ** *
36011028 CTCGTTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGTAAC
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
*
36011071 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * *
36011113 CTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGTAAC
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * *
36011156 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * * * *
36011199 CTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * *
36011242 ATAGGCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
36011284 CTCGACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
36011325 CCTTAGTGGC
Statistics
Matches: 468, Mismatches: 114, Indels: 25
0.77 0.19 0.04
Matches are distributed among these distances:
42 200 0.43
43 268 0.57
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (43 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
Found at i:36010836 original size:85 final size:84
Alignment explanation
Indices: 36010688--36011327 Score: 568
Period size: 85 Copynumber: 7.5 Consensus size: 84
36010678 GTCCGTGACA
* * * * * ** * *
36010688 CTAGGCCCTTGGTGGTGCGAGAGCCTCGAGCACCATCAGCACCTCGGTGCTATGAT-GGGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGA
* **
36010752 GCCTCGGACACTGTCGGCAAC
65 GCCTCGGGCACCATCGGC-AC
* * * **
36010773 CTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGA
* *
36010837 ACCTCGGGCACCATCGGTAAC
65 GCCTCGGGCACCATCGG-CAC
* * * * * *
36010858 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTCGGTCGTACGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGA
* * *
36010923 GCCTTGGGCACCATCGGTAAA
65 GCCTCGGGCACCATCGG-CAC
* * * * * *
36010944 ATAGGCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGACCCTTGGTCGTGCGGGAG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAG
36011009 CCTCGGGCACCATCGGCAC
66 CCTCGGGCACCATCGGCAC
* *** * * ** *
36011028 CTCGTTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGG
*
36011092 AGCCTCGAGCACCATCGGCAC
64 AGCCTCGGGCACCATCGGCAC
* ** * * *
36011113 CTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGG
* *
36011177 AGGCTCGGGCACCATCGGCAAA
64 AGCCTCGGGCACCATCGGC-AC
* * * * * ** * *
36011199 CTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAAATAGGCCATTGGTCGTGCGGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGA
*
36011264 GCCTCGGCCACCATCGGCAC
65 GCCTCGGGCACCATCGGCAC
* *
36011284 CTCGACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
36011328 TAGTGGCTCG
Statistics
Matches: 454, Mismatches: 92, Indels: 19
0.80 0.16 0.03
Matches are distributed among these distances:
84 31 0.07
85 289 0.64
86 134 0.30
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (84 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAC
Found at i:36010922 original size:128 final size:128
Alignment explanation
Indices: 36010750--36011322 Score: 356
Period size: 128 Copynumber: 4.5 Consensus size: 128
36010740 TGATGGGCGG
* ** * * * *
36010750 GAGCCTCGGACACTGTCGGCAACCTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-CA
1 GAGCCTCGGGCACCATCGGCAAACTAGTCCCTCGGTCGTACGGGAGCCTCGAGCACCATCGGTAA
** * * * *
36010814 CCTTGGTGC-TTGGAT-GTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
66 AATAGG-CCATTGG-TCGTGCGGGAACCTCGGCCACCATCGG-AACCTAGACCCTTGGTCGTGCG
36010877 A
128 A
* * *
36010878 GAGGCTCGGGCACCATCGGCAAACTAAG-CCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTA
1 GAGCCTCGGGCACCATCGGCAAACT-AGTCCCTCGGTCGTACGGGAGCCTCGAGCACCATCGGTA
** * * *
36010942 AAATAGGCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGACCCTTGGTCGTGCGG
65 AAATAGGCCATTGGTCGTGCGGGAACCTCGGCCACCATCGGAACCTAGACCCTTGGTCGTGCGA
* * ** * * * **
36011006 GAGCCTCGGGCACCATCGGC-ACCTCGTTGCTATGAT-GTGCGGGAGCCTCG-GACACTGTCGGT
1 GAGCCTCGGGCACCATCGGCAAACTAGTCCCT-CGGTCGTACGGGAGCCTCGAG-CACCATCGGT
** * * * * ***
36011068 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGAT-GTGC
64 AAAATAGGCCATTGGTCGTGCGGGAACCTCG-GCCACCATCGGAACCTAGACCCTTGG-TCGTGC
*
36011131 GG
127 GA
* * * * * * * * * *
36011133 GAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAAACTAGTCCCTCGGTCGTACGGGAGCCTCGAGCACCATCGGTAA
* * * * * * * * ** * * *
36011198 ACTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAAATAGGCCATTGGTCGTGCGG
66 AATAGGCCATTGGTCGTGCGGGAACCTCGGCCACCATCGG-AACCTAGACCCTTGGTCGTGCGA
* * * * * * * *
36011262 GGGCCTCGGCCACCATCGGC-ACCTCGACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 GAGCCTCGGGCACCATCGGCAAACTAGTCCCTCGGTCGTACGGGAGCCTCGAGCACCATCGG
36011323 CACCTTAGTG
Statistics
Matches: 358, Mismatches: 72, Indels: 30
0.78 0.16 0.07
Matches are distributed among these distances:
126 2 0.01
127 100 0.28
128 193 0.54
129 63 0.18
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.19
Consensus pattern (128 bp):
GAGCCTCGGGCACCATCGGCAAACTAGTCCCTCGGTCGTACGGGAGCCTCGAGCACCATCGGTAA
AATAGGCCATTGGTCGTGCGGGAACCTCGGCCACCATCGGAACCTAGACCCTTGGTCGTGCGA
Found at i:36011087 original size:127 final size:127
Alignment explanation
Indices: 36010918--36011151 Score: 319
Period size: 127 Copynumber: 1.8 Consensus size: 127
36010908 CTCGGTCGTA
* * *
36010918 CGGGAGCCTTGGGCACCATCGGTAAAATAGGCCATTGGTCGTGCGGGGGCCTCG-GCCACCATCG
1 CGGGAGCCTCGGACACCATCGGTAAAATAGGCCATTGGTCGTGCGGGAGCCTCGAG-CACCATCG
*
36010982 GCACCTCGACCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGTTGCTATGATGTG
65 GCACCTCGACCCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCACCTCGTTGCTATGATGTG
** ** *
36011045 CGGGAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG
1 CGGGAGCCTCGGACACCATCGGTAAAATAGGCCATTGGTCGTGCGGGAGCCTCGAGCACCATCGG
* ***
36011110 CACCTTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGG
66 CACCTCGACCCTTGGATGTGCGGGAACCTCGGGCACCATCGG
36011152 TAACCTAGGC
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
127 90 0.98
128 2 0.02
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (127 bp):
CGGGAGCCTCGGACACCATCGGTAAAATAGGCCATTGGTCGTGCGGGAGCCTCGAGCACCATCGG
CACCTCGACCCTTGGATGTGCGGGAACCTCGGGCACCATCGGCACCTCGTTGCTATGATGTG
Found at i:36011229 original size:298 final size:297
Alignment explanation
Indices: 36010693--36011442 Score: 1196
Period size: 298 Copynumber: 2.5 Consensus size: 297
36010683 TGACACTAGG
* * * * * *
36010693 CCCTTGGTGGTGCGAGAGCCTCGAGCACCATCAGCACCTCGGTGCTATGATGGGCGGGAGCCTCG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGTTGCTATGATGTGCGGGAGCCTCG
*
36010758 GACACTGTCGGCAACCTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC
66 GACACTGTCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC
36010823 TTGGATGTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
130 TTGGATGTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
36010888 CACCATCGGCAAACTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAAATAGGCCAT
195 CACCATCGGCAAACTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAAATAGGCCAT
36010953 TGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGA
260 TGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGA
36010991 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGTTGCTATGATGTGCGGGAGCCTCG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGTTGCTATGATGTGCGGGAGCCTCG
36011056 GACACTGTCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC
66 GACACTGTCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC
36011121 TTGGATGTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
130 TTGGATGTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
36011186 CACCATCGGCAAACTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAAATAGGCCAT
195 CACCATCGGCAAACTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAAATAGGCCAT
36011251 TGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGA
260 TGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGA
* * ** ** *
36011289 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTGGCTCGGATGTATGGGTAGCAT
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TCGTTGCTATGATGTGCGGG-AGCCT
* * ** *
36011354 CGG-CAC-CTCGG----T-GG--CTAGGAGGTGCGGGAGCCTCG-GACACCATCGGCAACTTGGT
64 CGGACACTGTCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGCACCTTGGT
*
36011409 GCTTGGATGTGCGGGAGCCTCGGGCACCCATCGG
128 GCTTGGATGTGCGGGAACCTCGGGCA-CCATCGG
36011443 CACCTTGGTG
Statistics
Matches: 427, Mismatches: 21, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
289 1 0.00
290 60 0.14
291 7 0.02
292 2 0.00
293 1 0.00
298 332 0.78
299 17 0.04
300 7 0.02
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (297 bp):
CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGTTGCTATGATGTGCGGGAGCCTCG
GACACTGTCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATGTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGC
ACCATCGGCAAACTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAAATAGGCCATT
GGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGA
Found at i:36011453 original size:43 final size:42
Alignment explanation
Indices: 36011351--36011467 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 42
36011341 GTATGGGTAG
* * *
36011351 CATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACAC
1 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGGACAC
* *
36011394 CATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACC
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACA-C
36011437 CATCGGCACCTTGGTGCTTGGGATGTGCGGG
1 CATCGGCACCTTGGTGCTT-GGATGTGCGGG
36011468 CTAAAGTAGA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 23 0.35
43 32 0.48
44 11 0.17
ACGTcount: A:0.14, C:0.27, G:0.39, T:0.20
Consensus pattern (42 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAC
Found at i:36011704 original size:66 final size:67
Alignment explanation
Indices: 36011593--36011719 Score: 229
Period size: 66 Copynumber: 1.9 Consensus size: 67
36011583 GAGCCGAGGT
*
36011593 GGGGTGCGTCTAGCCCGCCCATGGGGGTCGAGTCGTCCCGTAACGACTCACCACGGGGGTGAGTC
1 GGGGTGCGTCTAGCCCGCCCATGGGGGTCGAGTCGTCCCGCAACGACTCACCACGGGGGTGAGTC
36011658 GG
66 GG
*
36011660 GGGGTGCGTCTAGCCC-CCCATGGGGGTCGGGTCGTCCCGCAACGACTCACCACGGGGGTG
1 GGGGTGCGTCTAGCCCGCCCATGGGGGTCGAGTCGTCCCGCAACGACTCACCACGGGGGTG
36011720 GGTCAGTCGC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
66 42 0.72
67 16 0.28
ACGTcount: A:0.13, C:0.31, G:0.40, T:0.16
Consensus pattern (67 bp):
GGGGTGCGTCTAGCCCGCCCATGGGGGTCGAGTCGTCCCGCAACGACTCACCACGGGGGTGAGTC
GG
Found at i:36014381 original size:256 final size:256
Alignment explanation
Indices: 36013926--36014438 Score: 1026
Period size: 256 Copynumber: 2.0 Consensus size: 256
36013916 CTTGATTCTA
36013926 TGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCATTAACGAA
1 TGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCATTAACGAA
36013991 CGAGACCTCAACCTGCTAACTAGCTACACGGAGGTGATCCTGCGTGGCTAGCTTCTTAGAGGGAC
66 CGAGACCTCAACCTGCTAACTAGCTACACGGAGGTGATCCTGCGTGGCTAGCTTCTTAGAGGGAC
36014056 TATGGCCTTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG
131 TATGGCCTTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG
36014121 GCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCAACAGGCCCGGG
196 GCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCAACAGGCCCGGG
36014182 TGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCATTAACGAA
1 TGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCATTAACGAA
36014247 CGAGACCTCAACCTGCTAACTAGCTACACGGAGGTGATCCTGCGTGGCTAGCTTCTTAGAGGGAC
66 CGAGACCTCAACCTGCTAACTAGCTACACGGAGGTGATCCTGCGTGGCTAGCTTCTTAGAGGGAC
36014312 TATGGCCTTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG
131 TATGGCCTTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG
36014377 GCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCAACAGGCCCGGG
196 GCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCAACAGGCCCGGG
36014438 T
1 T
36014439 AATCTTTGAA
Statistics
Matches: 257, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
256 257 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (256 bp):
TGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCATTAACGAA
CGAGACCTCAACCTGCTAACTAGCTACACGGAGGTGATCCTGCGTGGCTAGCTTCTTAGAGGGAC
TATGGCCTTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG
GCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCAACAGGCCCGGG
Found at i:36015430 original size:20 final size:20
Alignment explanation
Indices: 36015383--36015431 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
36015373 AACCCTTTCG
*
36015383 GCATCGCAAGGACGGTACTC
1 GCATCGCGAGGACGGTACTC
*
36015403 GCATCGCGAGGACGGTGCTC
1 GCATCGCGAGGACGGTACTC
36015423 GCATCGCGA
1 GCATCGCGA
36015432 CCCCAGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.20, C:0.31, G:0.35, T:0.14
Consensus pattern (20 bp):
GCATCGCGAGGACGGTACTC
Found at i:36018680 original size:128 final size:127
Alignment explanation
Indices: 36018398--36021838 Score: 2311
Period size: 128 Copynumber: 27.0 Consensus size: 127
36018388 CCGTCGGCCC
* * ** ** * *
36018398 CTAGGTCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGAT-GTCCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
* * ** ** * **
36018462 GCCTCGGACACCATCGGTAAAGTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-CC
65 GCCTCGGCCACCATCGG-CACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
** * * **
36018525 CTAGGTGCTGGGAT-GTCCGGGAGCCTCGGACACCATCGGTAAAGTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* * * * *
36018589 AGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTCCGGGAGCCTCGGACACCATCGGTAAA
64 AGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * ** ** * *
36018653 GTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGAT-GTCCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
* * ** ** * *
36018717 GCCTCGGACACCATCGGTAAAGTAGGCCCTTGG-TCGTGCGGGAGGCTCGGGCACCATCGGC-AC
65 GCCTCGGCCACCATCGG-CACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** * **
36018780 CTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* *
36018844 AGCCTCGAG-CACCATCGGCACCTTGGT-CTTTGGATGTGCGGGAGCCTTC-CGCACCATCGAG-
64 AGCCTCG-GCCACCATCGGCACCTAGGTGC-TTGGATGTGCGGGAGCC-TCGGGCACCATCG-GC
*
36018905 AAC
125 AAA
* * * **
36018908 CTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * * * *
36018973 GCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAA
65 GCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** ** * * *
36019036 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGAT-ATCCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
* * ** * **
36019100 GCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-CC
65 GCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
** * * * *
36019163 CTAGGTGCTGGGAT-ATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* * * * *
36019227 AGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAA
64 AGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** ** * * *
36019291 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGAT-ATCCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
* * ** *
36019355 GCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-AC
65 GCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* *** * **
36019418 CTCGTTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* ** *
36019482 AGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCCCGCACCATCGGCAAC
64 AGCCTCG-GCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * * *
36019546 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * * ** * * * * * *
36019611 ACCTGGGGCACCATCGGCAAAATAGG-CCATTGG-TCGTGCGGGAGTCGCGGCCACTATCGGC-C
65 GCCTCGGCCACCATCGGC-ACCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA
*
36019673 C
127 A
** * * *
36019674 CTAGGTGCTGGGAT-GTGAGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* *
36019738 AGCCTCGAG-CACCATCGGCACCTTGGT-CTTTGGATGTGCGGGAGCCTTC-CGCACCATCGAG-
64 AGCCTCG-GCCACCATCGGCACCTAGGTGC-TTGGATGTGCGGGAGCC-TCGGGCACCATCG-GC
*
36019799 AAC
125 AAA
* * * **
36019802 CTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * ** *
36019867 GCCTCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTACGGGAGCCTCGGGCACC
65 GCCTC----GG--C---CACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACC
36019931 ATCGGCAAA
119 ATCGGCAAA
* * * * * *
36019940 ATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGGGACCTCGGCCATTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAG-CCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGCGGGA
* * **
36020004 GCCTCGGGCACCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
65 GCCTCGGCCACCATCGGCACCTAGGT-GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * * *
36020068 ATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGGGACCTCGGCCATTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAG-CCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGCGGGA
* * **
36020132 GCCTCGGTCACCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
65 GCCTCGGCCACCATCGGCACCTAGGT-GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * * *
36020196 ATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGGGACCTCGGCCATTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAG-CCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGCGGGA
* * **
36020260 GCCTCGGTCACCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
65 GCCTCGGCCACCATCGGCACCTAGGT-GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * ** * ** * * *
36020324 ATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTATCGGCCCCTAAGTGCTGGGAT-GTCCGAGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
** * ** * * **
36020388 GCCTCGAACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACTATCGGC-CC
65 GCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** * * * * *
36020451 CTAAGTGCTGGGAT-GTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* * * * * * **
36020515 AGCCTCGGCCACTATCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCGGCAAA
64 AGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * ** * ** * * *
36020579 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTATCGGCCCCTAAGTGCTGGGAT-GTCCGAGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
** * ** * ** *
36020643 GCCTCGAACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACTGTCGGCAAC
65 GCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * * **
36020707 CTAGGCCATTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
* * ** * *
36020771 GCCTC-CCGCACTATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAA
65 GCCTCGGC-CACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA
36020834 A
127 A
* * * **
36020835 CTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG-
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * * *
36020899 GTCCTCGGCCAGCATCGGGACCTCGG-CCATTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-A
65 G-CCTCGGCCACCATCGGCACCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA
*
36020961 C
127 A
* ** * * ** **
36020962 CTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAAAATAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* * *
36021026 AGCCTCGGCCACCATCGGC-CTCTAGGTGCTGGGATGT-CTGGGA-CCTCGGACACAATCGGCAA
64 AGCCTCGGCCACCATCGGCAC-CTAGGTGCTTGGATGTGC-GGGAGCCTCGGGCACCATCGGCAA
36021088 A
127 A
* * * * *** * *
36021089 CTAGGCCCTTGGTCGAGCGGGAGCCTCGGGCACCATCGGCACCTCGATGCTATGAT-GTAC---A
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCT-TGGTCGTGCGGGA
* * * * * * ** * * ** *
36021150 G--TCGGCAACC-TAGGC-CCTTGGT-CGTGCG-GGAGCCTCG-GCCAC---CATCGGC--C--C
65 GCCTCGGCCACCATCGGCACCTAGGTGCTTG-GATGTG-CGGGAGCCTCGGGCACCATCGGCAAA
** * * * *
36021201 CTAGGTGCTGGGAT-GTGCGGGAGCCTTGGACACCATCGGTAAACTAGGCCCTTGGTCGTGCTGG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG
* * * * ** *
36021265 AGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGGGCGGGAGCCTCGGACACTGTCGGCAAC
64 AGCCTCGGCCACCATCGGCACCTAGGTGCT-TGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * **
36021329 CTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGAACCTAGGCCCTTGG-TCGTGCGGG
* ** ** *
36021392 AGCCTC-CCGCACCATCGGCAACCTAGGCCCTTGGCCGTGCGAGAGGCC-CGGGCACCATCGGCA
64 AGCCTCGGC-CACCATCGGC-ACCTAGGTGCTTGGATGTGCGGGA-GCCTCGGGCACCATCGGCA
36021455 AA
126 AA
* * * * * * * * **
36021457 CTAAGACATTGGTCGTGCGGGAGCCTGGGGCGCTATCAGCAAAATAGGCCCTTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GGAACCTAGGCCCTTGGTCGTGCGGGA
* * * * *
36021522 GCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTTGGACACCATCGGTAAA
65 GCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * ** * *
36021585 CTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGAT-GGGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCT-TGGTCGTGCGGGA
* ** * * *
36021649 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACAATCGGCAAA
65 GCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * ** * * *
36021713 CTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTAGTCGAGCGGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * * ** *
36021778 GCCTCGGCCACTATCGGGACCTCGGCACTTGG-TCGTGCGGGAGCCTCAGGCACCATCGGCA
65 GCCTCGGCCACCATCGGCACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
36021839 CCTTGGTGGC
Statistics
Matches: 2600, Mismatches: 572, Indels: 283
0.75 0.17 0.08
Matches are distributed among these distances:
112 34 0.01
113 10 0.00
114 1 0.00
116 5 0.00
118 10 0.00
119 14 0.01
120 15 0.01
121 15 0.01
122 1 0.00
123 2 0.00
124 4 0.00
126 30 0.01
127 661 0.25
128 1558 0.60
129 132 0.05
130 2 0.00
131 1 0.00
132 1 0.00
133 2 0.00
137 40 0.02
138 61 0.02
139 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (127 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAA
Found at i:36018996 original size:85 final size:84
Alignment explanation
Indices: 36018391--36021891 Score: 2471
Period size: 85 Copynumber: 41.2 Consensus size: 84
36018381 GTTTAGACCG
* * * ** ** *
36018391 TCGGCCCCTAGGTCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-
1 TCGGCACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TC
* *
36018454 GTCCGGGAGCCTCGGACACCA
64 GTGCGGGAGCCTCGGCCACCA
* ** ** * ** ** *
36018475 TCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT
1 TCGG-CACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
* *
36018539 -GTCCGGGAGCCTCGGACACCA
63 CGTGCGGGAGCCTCGGCCACCA
* ** ** * ** ** *
36018560 TCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT
1 TCGG-CACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
* *
36018624 -GTCCGGGAGCCTCGGACACCA
63 CGTGCGGGAGCCTCGGCCACCA
* ** ** * ** ** *
36018645 TCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT
1 TCGG-CACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
* *
36018709 -GTCCGGGAGCCTCGGACACCA
63 CGTGCGGGAGCCTCGGCCACCA
* ** ** * * * * ** *
36018730 TCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT
1 TCGG-CACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGT
* **
36018794 -GTGCGGGAGCCTCGGACACTG
63 CGTGCGGGAGCCTCGGCCACCA
** * * * *
36018815 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTCTTTGGA
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-
*
36018878 T-GTGCGGGAGCCTTCCG-CACCA
62 TCGTGCGGGAGCC-TCGGCCACCA
* ** * * * * *
36018900 TCGAGAACCTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGGTC
1 TCG-GCACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
36018965 GTGCGGGAGCCTCGGCCACCA
64 GTGCGGGAGCCTCGGCCACCA
* * * *
36018986 TCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36019051 TGCGGGAGCCTCGGCCACCA
65 TGCGGGAGCCTCGGCCACCA
* * * *
36019071 TCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36019136 TGCGGGAGCCTCGGCCACCA
65 TGCGGGAGCCTCGGCCACCA
* * * *
36019156 TCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36019221 TGCGGGAGCCTCGGCCACCA
65 TGCGGGAGCCTCGGCCACCA
* * * *
36019241 TCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36019306 TGCGGGAGCCTCGGCCACCA
65 TGCGGGAGCCTCGGCCACCA
* * * *
36019326 TCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
*
36019391 TGCGGGAGCCTCGGGCACCA
65 TGCGGGAGCCTCGGCCACCA
* * * ** * *
36019411 TCGGCACCTCGTTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36019476 TGCGGGAGCCTCGAG-CACCA
65 TGCGGGAGCCTCG-GCCACCA
* * *
36019496 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCCCG-CACCATCGGCAACCTAGGCCCTTGGTC
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCT-CGGACACCATCGGCAAACTAGGCCCTTGGTC
* * *
36019560 GTGCGAGAGGCTCGGGCACCA
64 GTGCGGGAGCCTCGGCCACCA
* * * ** * * * * *
36019581 TTGGCAAACTAAGCCCTTGGTCGTGCGGGAACCTGGGGCACCATCGGCAAAATAGGCCATTGGTC
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * *
36019646 GTGCGGGAGTCGCGGCCACTA
64 GTGCGGGAGCCTCGGCCACCA
* * *
36019667 TCGGCCCCTAGGTGCTGGGATGTGAGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36019732 TGCGGGAGCCTCGAG-CACCA
65 TGCGGGAGCCTCG-GCCACCA
* * *
36019752 TCGGCACCTTGGT-CTTTGGATGTGCGGGAGCCTTCCG-CACCATCGAG-AACCTAGGCCCTTGG
1 TCGGCACCTAGGTGC-TTGG-TGTGCGGGAGCC-TCGGACACCATCG-GCAAACTAGGCCCTTGG
* * *
36019814 TCGTGCGTGAGCCTCGGGCACTA
62 TCGTGCGGGAGCCTCGGCCACCA
* ** ** *
36019837 TCGGTAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGAGAGGCTCGGGCACCATCGGCAAACTAAG
1 TCGG-CACCTAGGTGCTTGGT-GTGCGGGAGCCTCG-GA--------CACCATCGGCAAACTAGG
* *
36019902 CCCTTGGTCGTACGGGAGCCTCGGGCACCA
55 CCCTTGGTCGTGCGGGAGCCTCGGCCACCA
** ** * * * * * *
36019932 TCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGG-GACCTCGGCCATTGGT
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAG-CCTCGGACACCATCGGCAAACTAGGCCCTTGGT
*
36019995 CGTGCGGGAGCCTCGGGCACCA
63 CGTGCGGGAGCCTCGGCCACCA
* * * * *
36020017 TCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTC
1 TCGGCACCTAGGT-GCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
*
36020082 GTGCGGG-GTCCTCGGCCAGCA
64 GTGCGGGAG-CCTCGGCCACCA
* * * * * * ** * *
36020103 TCGGGACCTCGG-CCATTGGTCGTGCGGGAGCCTCGGTCACCATCGGC-ACCTTGGTGGCTCAGA
1 TCGGCACCTAGGTGC-TTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGG-CCCT-TGG
*
36020166 T-GTGCGGGAGCCTCGGGCACCA
62 TCGTGCGGGAGCCTCGGCCACCA
** ** * * * * * *
36020188 TCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGG-GACCTCGGCCATTGGT
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAG-CCTCGGACACCATCGGCAAACTAGGCCCTTGGT
*
36020251 CGTGCGGGAGCCTCGGTCACCA
63 CGTGCGGGAGCCTCGGCCACCA
* * * * *
36020273 TCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTC
1 TCGGCACCTAGGT-GCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
*
36020338 GTGCGGGAGCCTCGGCCACTA
64 GTGCGGGAGCCTCGGCCACCA
* * * * * *
36020359 TCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
*
36020424 TGCGGGAGCCTCGGCCACTA
65 TGCGGGAGCCTCGGCCACCA
* * * * * *
36020444 TCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
*
36020509 TGCGGGAGCCTCGGCCACTA
65 TGCGGGAGCCTCGGCCACCA
* * * * * *
36020529 TCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
*
36020594 TGCGGGAGCCTCGGCCACTA
65 TGCGGGAGCCTCGGCCACCA
* * * * * *
36020614 TCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* **
36020679 TGCGGGAGCCTCGGACACTG
65 TGCGGGAGCCTCGGCCACCA
* * * * * **
36020699 TCGGCAACCTAGG-CCATTGGTCGTGTGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGA
1 TCGGC-ACCTAGGTGC-TTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-
* *
36020762 T-GTGCGGGAGCCTC-CCGCACTA
62 TCGTGCGGGAGCCTCGGC-CACCA
** * * * *
36020784 TCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTC
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* *
36020849 GTACGGGAGCCTCGGGCACCA
64 GTGCGGGAGCCTCGGCCACCA
** ** * * * * * *
36020870 TCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGG-GACCTCGGCCATTGGT
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAG-CCTCGGACACCATCGGCAAACTAGGCCCTTGGT
*
36020933 CGTGCGGGAGCCTCGGGCACCA
63 CGTGCGGGAGCCTCGGCCACCA
* * * ** *
36020955 TCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAAAATAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36021020 TGCGGGAGCCTCGGCCACCA
65 TGCGGGAGCCTCGGCCACCA
* *
36021040 TCGGC-CTCTAGGTGCTGGGATGT-CTGGGA-CCTCGGACACAATCGGCAAACTAGGCCCTTGGT
1 TCGGCAC-CTAGGTGCTTGG-TGTGC-GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGT
* *
36021102 CGAGCGGGAGCCTCGGGCACCA
63 CGTGCGGGAGCCTCGGCCACCA
* * * * * * * * * *
36021124 TCGGCACCTCGATGCTATGATGTAC---AG--TCGG-CAACC-TAGGC--CCTTGGTCGTGCGGG
1 TCGGCACCTAGGTGCT-TGGTGTGCGGGAGCCTCGGAC-ACCATCGGCAAACTAGGCCCT--TGG
* * *
36021180 AGCCT-CGGCCA-CCATCGGCC-CC-
62 -TCGTGCGG-GAGCC-TCGGCCACCA
* ** * * * * *
36021202 TAGG-TGCT-GG-GATGTGCGGGAGCCTTGGACACCATCGG------T----AAACTAGGCCCTT
1 TCGGCACCTAGGTGCT-TG-GTGTG-C-GGGA-GCC-TCGGACACCATCGGCAAACTAGGCCCTT
* *
36021254 GGTCGTGCTGGAGCCTCGGGCACCA
60 GGTCGTGCGGGAGCCTCGGCCACCA
* * * ** *
36021279 TCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
36021344 TGCGGGAGCCTCGAG-CACCA
65 TGCGGGAGCCTCG-GCCACCA
* * * *
36021364 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCCCG-CACCATCGGCAACCTAGGCCCTTGGCC
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCT-CGGACACCATCGGCAAACTAGGCCCTTGGTC
* *
36021428 GTGCGAGAGGCC-CGGGCACCA
64 GTGCGGGA-GCCTCGGCCACCA
* * * * * * * * *
36021449 TCGGCAAACTAAG-ACATTGGTCGTGCGGGAGCCTGGGGCGCTATCAGCAAAATAGGCCCTTGGT
1 TCGGC-ACCTAGGTGC-TTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGT
36021513 CGTGCGGGAGCCTCGGCCACCA
63 CGTGCGGGAGCCTCGGCCACCA
* * * *
36021535 TCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTTGGACACCATCGGTAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* *
36021600 TGCTGGAGCCTCGGGCACCA
65 TGCGGGAGCCTCGGCCACCA
* * * * *
36021620 TCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* * * *
36021685 TGCGAGAGGCTCGGGCACAA
65 TGCGGGAGCCTCGGCCACCA
* * ** * * * *
36021705 TCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTAGTC
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * *
36021770 GAGCGGGGGCCTCGGCCACTA
64 GTGCGGGAGCCTCGGCCACCA
* * ** * * ** *
36021791 TCGGGACCTCGGCACTTGGTCGTGCGGGAGCCTCAGG-CACCATCGGC-ACCTTGGTGGCTCGGA
1 TCGGCACCTAGGTGCTTGGT-GTGCGGGAGCCTC-GGACACCATCGGCAAACTAGG-CCCTTGG-
*
36021854 T-GTGCGGGAGCCTCGGGCACCCA
62 TCGTGCGGGAGCCTCGGCCA-CCA
*
36021877 TCGGCACCTTGGTGC
1 TCGGCACCTAGGTGC
36021892 CTAGGATATG
Statistics
Matches: 2876, Mismatches: 405, Indels: 270
0.81 0.11 0.08
Matches are distributed among these distances:
75 16 0.01
76 12 0.00
77 15 0.01
78 12 0.00
79 18 0.01
80 18 0.01
81 3 0.00
84 129 0.04
85 2066 0.72
86 508 0.18
87 3 0.00
94 3 0.00
95 73 0.03
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (84 bp):
TCGGCACCTAGGTGCTTGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGT
GCGGGAGCCTCGGCCACCA
Found at i:36019016 original size:170 final size:169
Alignment explanation
Indices: 36018391--36021838 Score: 2815
Period size: 170 Copynumber: 20.3 Consensus size: 169
36018381 GTTTAGACCG
* * ** ** *
36018391 TCGGCCCCTAGGTCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-
1 TCGGCACCTAGGTCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TC
* * **** ** * *
36018454 GTCCGGGAGCCTCGGACACCATCGGTAAAGTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACCA
64 GTGCGGGAGCCTCGGCCACCATCGG-CCCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCA
** ** * * *
36018518 TCGGC-CCCTAGGTGCTGGGAT-GTCCGGGAGCCTCGGACACCA
127 TCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* ** * * ** ** *
36018560 TCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT
1 TCGG-CACCTAGGTCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
* * **** ** * *
36018624 -GTCCGGGAGCCTCGGACACCATCGGTAAAGTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACC
63 CGTGCGGGAGCCTCGGCCACCATCGG-CCCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACC
** ** * * *
36018687 ATCGGC-CCCTAGGTGCTGGGAT-GTCCGGGAGCCTCGGACACCA
126 ATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* ** * * * * * ** *
36018730 TCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT
1 TCGG-CACCTAGGTCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGT
* ** * ** *
36018794 -GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GAGCAC
63 CGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA-CAC
* * * * *
36018856 CATCGGC-ACCTTGGTCTTTGGAT-GTGCGGGAGCCTTC-CGCACCA
125 CATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCC-TCGGGCACCA
* * * * * * *
36018900 TCGAGAACCTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGGTC
1 TCG-GCACCTAGGTCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* *
36018965 GTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATC
64 GTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATC
*
36019030 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCA
129 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * *
36019071 TCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* *
36019136 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCG
65 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
*
36019201 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCA
130 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * *
36019241 TCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* *
36019306 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATATCCGGGAGCCTCGGACACCATCG
65 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
36019371 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
130 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * ** * *
36019411 TCGGCACCTCGTTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* * * *
36019476 TGCGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCCCG-CACCAT
65 TGCGGGAGCCTCG-GCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCT-CGGACACCAT
* * *
36019539 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCA
128 CGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * * * * * *
36019581 TTGGCAAACTAAGCCCTTGGTCGTGCGGGAACCTGGGGCACCATCGGCAAAATAGGCCATTGGTC
1 TCGGC-ACCTAGGTCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * *
36019646 GTGCGGGAGTCGCGGCCACTATCGGCCCCTAGGTGCTGGGATGTGAGGGAGCCTCGGACACCATC
64 GTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATC
*
36019711 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
129 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * *
36019752 TCGGCACCTTGGTCTTTGGATGTGCGGGAGCCTTCCG-CACCATCGAG-AACCTAGGCCCTTGGT
1 TCGGCACCTAGGTCCTTGG-TGTGCGGGAGCC-TCGGACACCATCG-GCAAACTAGGCCCTTGGT
* * * **** ** *
36019815 CGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGG-TCGTGCGGGAGCCTCGAGAGGC
63 CGTGCGGGAGCCTCGGCCACCATCGG-CCCCTAGGTGCTGGGAT-GTGCGGGAGCCTCG-GA---
* *
36019879 TCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCA
122 -----CACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
** * * * * * * *
36019932 TCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGG-GACCTCGGCCATTGGT
1 TCGGC-ACCTAGGTCCTTGGT-GTGCGGGAG-CCTCGGACACCATCGGCAAACTAGGCCCTTGGT
* * * ** *
36019995 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGGGCACCA
63 CGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGT-GCTGGGATGTGCGGGAGCCTCGGACACCA
* * *
36020060 TCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCA
127 TCGGCAAACTAGGCCCTTGGTCGTGCGGGAG-CCTCGGGCACCA
* * * * * ** * *
36020103 TCGGGACCTCGG-CCATTGGTCGTGCGGGAGCCTCGGTCACCATCGGC-ACCTTGGTGGCTCAGA
1 TCGGCACCTAGGTCC-TTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGG-CCCT-TGG
* *** ** * *
36020166 T-GTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGG-GTCCTCGGCCA
62 TCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGGAG-CCTCGGACA
* * * * * *
36020228 GCATCGG-GACCTCGGCCATTGGTCGTGCGGGAGCCTCGGTCACCA
124 CCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * * *
36020273 TCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTC
1 TCGGCACCTAGGT-CCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * *
36020338 GTGCGGGAGCCTCGGCCACTATCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATC
64 GTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATC
* *
36020403 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTA
129 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * * * *
36020444 TCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* * * * *
36020509 TGCGGGAGCCTCGGCCACTATCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCG
65 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
* *
36020574 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTA
130 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * * * *
36020614 TCGGCCCCTAAGTGCTGGGATGTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* ** * * * * *
36020679 TGCGGGAGCCTCGGACACTGTCGGCAACCTAGG-CCATTGG-TCGTGTGGGAGCCTCGGGCACCA
65 TGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGC-TGGGAT-GTGCGGGAGCCTCGGACACCA
* * ** ** *
36020742 TCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCCCGCACTA
127 TCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * * * *
36020784 TCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTC
1 TCGGC-ACCTAGGTCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * *** ** * * *
36020849 GTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGG-GTCCTCGGCCAGC
64 GTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGGAG-CCTCGGACACC
* * * *
36020912 ATCGG-GACCTCGGCCATTGGTCGTGCGGGAGCCTCGGGCACCA
126 ATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * ** *
36020955 TCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAAAATAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* *
36021020 TGCGGGAGCCTCGGCCACCATCGGCCTCTAGGTGCTGGGATGT-CTGGGA-CCTCGGACACAATC
65 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGC-GGGAGCCTCGGACACCATC
*
36021083 GGCAAACTAGGCCCTTGGTCGAGCGGGAGCCTCGGGCACCA
129 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * *
36021124 TCGGCACCTCGATGCTATGATGTAC---AG--TCGG-CA--A----C---CTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
*
36021174 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTTGGACACCATCG
65 TGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCG
* *
36021239 GTAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCA
130 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * ** *
36021279 TCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* * * *
36021344 TGCGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCCCG-CACCAT
65 TGCGGGAGCCTCG-GCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCT-CGGACACCAT
* * *
36021407 CGGCAACCTAGGCCCTTGGCCGTGCGAGAGGCC-CGGGCACCA
128 CGGCAAACTAGGCCCTTGGTCGTGCGGGA-GCCTCGGGCACCA
* * * * * * * * * *
36021449 TCGGCAAACTAAGACATTGGTCGTGCGGGAGCCTGGGGCGCTATCAGCAAAATAGGCCCTTGGTC
1 TCGGC-ACCTAGGTCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
*
36021514 GTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTTGGACACCATC
64 GTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATC
* *
36021579 GGTAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCA
129 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * * *
36021620 TCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTCCT-TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
* * * * ** * ** * * *
36021685 TGCGAGAGGCTCGGGCACAATCGGCAAACTAAGCCCTTGG-TCGTACGGGAGCCTCGGGCACCAT
65 TGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCAT
* * * * * *
36021749 CGGCAAAATAGGCCCTTAGTCGAGCGGGGGCCTCGGCCACTA
128 CGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* *
36021791 TCGGGACCTCGG-CACTTGGTCGTGCGGGAGCCTCAGG-CACCATCGGCA
1 TCGGCACCTAGGTC-CTTGGT-GTGCGGGAGCCTC-GGACACCATCGGCA
36021839 CCTTGGTGGC
Statistics
Matches: 2773, Mismatches: 400, Indels: 210
0.82 0.12 0.06
Matches are distributed among these distances:
154 60 0.02
155 73 0.03
157 1 0.00
158 2 0.00
160 4 0.00
161 2 0.00
163 2 0.00
164 4 0.00
166 2 0.00
167 1 0.00
168 14 0.01
169 76 0.03
170 1546 0.56
171 826 0.30
172 19 0.01
179 5 0.00
180 110 0.04
181 26 0.01
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (169 bp):
TCGGCACCTAGGTCCTTGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGT
GCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCGG
CAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
Found at i:36019905 original size:52 final size:52
Alignment explanation
Indices: 36019826--36019924 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
36019816 GTGCGTGAGC
* * * *
36019826 CTCGGGCACTATCGGTAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGAGAGG
1 CTCGGGCACCATCGGCAAAATAAGCCCTTGGTCGTACGGGAGCCTCGAGAGG
*
36019878 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCG
1 CTCGGGCACCATCGGCAAAATAAGCCCTTGGTCGTACGGGAGCCTCG
36019925 GGCACCATCG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.18
Consensus pattern (52 bp):
CTCGGGCACCATCGGCAAAATAAGCCCTTGGTCGTACGGGAGCCTCGAGAGG
Found at i:36019967 original size:95 final size:95
Alignment explanation
Indices: 36019788--36019960 Score: 276
Period size: 95 Copynumber: 1.8 Consensus size: 95
36019778 GGAGCCTTCC
* * * * * *
36019788 GCACCATCGAGAACCTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCC
1 GCACCATCGAGAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCC
36019853 TTGGTCGTGCGGGAGCCTCGAGAGGCTCGG
66 TTGGTCGTGCGGGAGCCTCGAGAGGCTCGG
36019883 GCACCATCG-GCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCC
1 GCACCATCGAG-AAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCC
36019947 CTTGGTCGTGCGGG
65 CTTGGTCGTGCGGG
36019961 GTCCTCGGCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
94 1 0.01
95 70 0.99
ACGTcount: A:0.19, C:0.29, G:0.34, T:0.18
Consensus pattern (95 bp):
GCACCATCGAGAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCC
TTGGTCGTGCGGGAGCCTCGAGAGGCTCGG
Found at i:36020001 original size:42 final size:42
Alignment explanation
Indices: 36019878--36021885 Score: 693
Period size: 43 Copynumber: 46.5 Consensus size: 42
36019868 CCTCGAGAGG
* * ** * *
36019878 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* ** * *
36019921 CTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAG-C
* *
36019964 CTCGGCCAGCATCGGGACCTCGGCCATTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGGCCATTGGTCGTGCGGGAGC
* * *
36020006 CTCGGGCACCATCGGCACCTTGGTGGCTCA--GAT-GTGCGGGAGC
1 CTCGGCCACCATCGGCACC-T--CGGC-CATTGGTCGTGCGGGAGC
* ** * *
36020049 CTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAG-C
* *
36020092 CTCGGCCAGCATCGGGACCTCGGCCATTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGGCCATTGGTCGTGCGGGAGC
* * *
36020134 CTCGGTCACCATCGGCACCTTGGTGGCTCA--GAT-GTGCGGGAGC
1 CTCGGCCACCATCGGCACC-T--CGGC-CATTGGTCGTGCGGGAGC
* ** * *
36020177 CTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAG-C
* *
36020220 CTCGGCCAGCATCGGGACCTCGGCCATTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGGCCATTGGTCGTGCGGGAGC
* * *
36020262 CTCGGTCACCATCGGCACCTTGGTGGCTCA--GAT-GTGCGGGAGC
1 CTCGGCCACCATCGGCACC-T--CGGC-CATTGGTCGTGCGGGAGC
* ** * *
36020305 CTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * * * *
36020348 CTCGGCCACTATCGGCCCCTAAGTG-C-TGGGAT-GTCCGAGAGC
1 CTCGGCCACCATCGGCACCT-CG-GCCATTGG-TCGTGCGGGAGC
** * * *
36020390 CTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * * * *
36020433 CTCGGCCACTATCGGCCCCTAAGTG-C-TGGGAT-GTCCGAGAGC
1 CTCGGCCACCATCGGCACCT-CG-GCCATTGG-TCGTGCGGGAGC
** * * *
36020475 CTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * * * *
36020518 CTCGGCCACTATCGGCCCCTAAGTG-C-TGGGAT-GTCCGAGAGC
1 CTCGGCCACCATCGGCACCT-CG-GCCATTGG-TCGTGCGGGAGC
** * * *
36020560 CTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * * * *
36020603 CTCGGCCACTATCGGCCCCTAAGTG-C-TGGGAT-GTCCGAGAGC
1 CTCGGCCACCATCGGCACCT-CG-GCCATTGG-TCGTGCGGGAGC
** * * *
36020645 CTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* ** * *
36020688 CTCGGACACTGTCGGCAACCTAGGCCATTGGTCGTGTGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * *
36020731 CTCGGGCACCATCGGCACCTTGGTGC-TTGGAT-GTGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGG-CCATTGG-TCGTGCGGGAGC
* * * * * *
36020773 CTC-CCGCACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG
1 CTCGGC-CACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * ** * *
36020816 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* ** * *
36020859 CTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG-GTC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAG-C
* *
36020902 CTCGGCCAGCATCGGGACCTCGGCCATTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGGCCATTGGTCGTGCGGGAGC
* * * *
36020944 CTCGGGCACCATCGGCACCTCGGTGC-TATGAT-GGGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGG-CCAT-TGGTCGTGCGGGAGC
* ** ** * *
36020986 CTCGGACACTGTCGGCAAAATAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * *
36021029 CTCGGCCACCATCGGC-CTCTAGGTGC-TGGGAT-GT-CTGGGA-C
1 CTCGGCCACCATCGGCAC-CTCGG-CCATTGG-TCGTGC-GGGAGC
* * * * * *
36021070 CTCGGACACAATCGGCAAACTAGGCCCTTGGTCGAGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * *
36021113 CTCGGGCACCATCGGCACCTCGATGCTA-TGATGTACAGT-CGGCAAC
1 CTCGGCCACCATCGGCACCTCG--GCCATTG--GT-C-GTGCGGGAGC
* * * * *
36021159 CTAGGCC-CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGA
1 CTCGGCCAC-----CAT-CGGCA-CCTCGG---CCATTGG----T-CGTGC---G-------GGA
36021223 GC
41 GC
* * * * * * *
36021225 CTTGGACACCATCGGTAAACTAGGCCCTTGGTCGTGCTGGAGC
1 CTCGGCCACCATCGG-CACCTCGGCCATTGGTCGTGCGGGAGC
* * * *
36021268 CTCGGGCACCATCGGCACCTCGGTGC-TATGAT-GGGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGG-CCAT-TGGTCGTGCGGGAGC
* ** * *
36021310 CTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* *
36021353 CTCGAG-CACCATCGGCACCTTGGTGC-TTGGAT-GTGCGGGAGC
1 CTCG-GCCACCATCGGCACCTCGG-CCATTGG-TCGTGCGGGAGC
* * * * *
36021395 CTC-CCGCACCATCGGCAACCTAGGCCCTTGGCCGTGCGAGAGGC
1 CTCGGC-CACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGA-GC
* * ** *
36021439 C-CGGGCACCATCGGCAAACTAAGACATTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * * * ** * *
36021481 CTGGGGCGCTATCAGCAAAATAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * *
36021524 CTCGGCCACCATCGGCCCCTAGGTGC-TGGGAT-GTGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGG-CCATTGG-TCGTGCGGGAGC
* * * * * * *
36021566 CTTGGACACCATCGGTAAACTAGGCCCTTGGTCGTGCTGGAGC
1 CTCGGCCACCATCGG-CACCTCGGCCATTGGTCGTGCGGGAGC
* * * *
36021609 CTCGGGCACCATCGGCACCTCGGTGC-TATGAT-GGGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGG-CCAT-TGGTCGTGCGGGAGC
* * * * *
36021651 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* * * ** * *
36021694 CTCGGGCACAATCGGCAAACTAAGCCCTTGGTCGTACGGGAGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* ** * * * * *
36021737 CTCGGGCACCATCGGCAAAATAGGCCCTTAGTCGAGCGGGGGC
1 CTCGGCCACCATCGGC-ACCTCGGCCATTGGTCGTGCGGGAGC
* *
36021780 CTCGGCCACTATCGGGACCTCGG-CACTTGGTCGTGCGGGAGC
1 CTCGGCCACCATCGGCACCTCGGCCA-TTGGTCGTGCGGGAGC
* * *
36021822 CTCAGG-CACCATCGGCACCTTGGTGGC-TCGGAT-GTGCGGGAGC
1 CTC-GGCCACCATCGGCACC-TCG-GCCATTGG-TCGTGCGGGAGC
*
36021865 CTCGGGCACCCATCGGCACCT
1 CTCGGCCA-CCATCGGCACCT
36021886 TGGTGCCTAG
Statistics
Matches: 1501, Mismatches: 314, Indels: 300
0.71 0.15 0.14
Matches are distributed among these distances:
40 3 0.00
41 32 0.02
42 534 0.36
43 818 0.54
44 32 0.02
45 13 0.01
46 17 0.01
47 1 0.00
50 3 0.00
51 4 0.00
52 6 0.00
53 6 0.00
54 2 0.00
55 2 0.00
56 3 0.00
58 5 0.00
59 1 0.00
61 7 0.00
62 3 0.00
66 8 0.01
67 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (42 bp):
CTCGGCCACCATCGGCACCTCGGCCATTGGTCGTGCGGGAGC
Found at i:36020052 original size:180 final size:180
Alignment explanation
Indices: 36019698--36020022 Score: 415
Period size: 180 Copynumber: 1.8 Consensus size: 180
36019688 GTGAGGGAGC
* * ** *
36019698 CTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTG
1 CTCGGACACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGCAAATAG
* * * *
36019763 GTCTTTGGATGTGCGGGAGCCTTCCGCACCATCGAGAACCTAGGCCCTTGGTCGTGCGTGAGCCT
66 GCCCTTGGATGTGCGGGAGCCTTCCGCACCATCGAGAACCTAGGCCATTGGTCGTGCGGGAGCCT
* * * *
36019828 CGGGCACTATCGGTAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGAGAGG
131 CGGGCACCATCGGCAAAATAGGCCCTAGATCGTGCGGGAGCCTCGAGAGG
* *
36019878 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATA
1 CTCGGACACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGC-AAATA
* * * *
36019943 GGCCCTTGG-TCGTGCGGG-GTCC-TCGGCCAGCATCG-GGACCTCGGCCATTGGTCGTGCGGGA
65 GGCCCTTGGAT-GTGCGGGAG-CCTTCCG-CACCATCGAGAACCTAGGCCATTGGTCGTGCGGGA
36020004 GCCTCGGGCACCATCGGCA
127 GCCTCGGGCACCATCGGCA
36020023 CCTTGGTGGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
180 99 0.80
181 25 0.20
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.18
Consensus pattern (180 bp):
CTCGGACACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGCAAATAG
GCCCTTGGATGTGCGGGAGCCTTCCGCACCATCGAGAACCTAGGCCATTGGTCGTGCGGGAGCCT
CGGGCACCATCGGCAAAATAGGCCCTAGATCGTGCGGGAGCCTCGAGAGG
Found at i:36021216 original size:70 final size:70
Alignment explanation
Indices: 36021081--36021216 Score: 200
Period size: 70 Copynumber: 1.9 Consensus size: 70
36021071 TCGGACACAA
* * *
36021081 TCGGCAAACTAGGCCCTTGGTCGAGCGGGAGCCTCGGGCACCATCGGCACCTCGATGCTATGATG
1 TCGGCAAACTAGGCCCTTGGTCGAGCGGGAGCCTCGGCCACCATCGGCACCTAGATGCTAGGATG
36021146 TACAG
66 TACAG
* * * * *
36021151 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATG
1 TCGGCAAACTAGGCCCTTGGTCGAGCGGGAGCCTCGGCCACCATCGGCACCTAGATGCTAGGATG
36021216 T
66 T
36021217 GCGGGAGCCT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 58 1.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (70 bp):
TCGGCAAACTAGGCCCTTGGTCGAGCGGGAGCCTCGGCCACCATCGGCACCTAGATGCTAGGATG
TACAG
Found at i:36021904 original size:44 final size:43
Alignment explanation
Indices: 36021813--36021905 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 43
36021803 CACTTGGTCG
* * *
36021813 TGCGGGAGCCTCAGGCACCATCGGCACCTTGGTGGCTCGGATG
1 TGCGGGAGCCTCAGGCACCATCGGCACCTTGGTGCCTAGGATA
*
36021856 TGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTAGGATA
1 TGCGGGAGCCTCAGGCA-CCATCGGCACCTTGGTGCCTAGGATA
36021900 TGCGGG
1 TGCGGG
36021906 CTAAAGAGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 16 0.36
44 29 0.64
ACGTcount: A:0.14, C:0.30, G:0.38, T:0.18
Consensus pattern (43 bp):
TGCGGGAGCCTCAGGCACCATCGGCACCTTGGTGCCTAGGATA
Found at i:36030971 original size:25 final size:25
Alignment explanation
Indices: 36030943--36030990 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36030933 GAATTAATTA
*
36030943 TTCAAAACTCACCGTTTCAATTGAT
1 TTCAAAACGCACCGTTTCAATTGAT
**
36030968 TTCACCACGCACCGTTTCAATTG
1 TTCAAAACGCACCGTTTCAATTG
36030991 TGAAATTCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (25 bp):
TTCAAAACGCACCGTTTCAATTGAT
Found at i:36034338 original size:4 final size:5
Alignment explanation
Indices: 36034268--36034371 Score: 52
Period size: 5 Copynumber: 19.4 Consensus size: 5
36034258 ATGAACACAT
* *
36034268 AAAT- AAATA AATATC AAATA AAACA ATAATA ACAATA ACAATAA TAAATAA
1 AAATA AAATA AA-ATA AAATA AAATA A-AATA A-AATA A-AAT-A -AAAT-A
** *
36034319 AAATA TCTATA AAA-A TAAATA AAATA AAATA AAATA AAA-G AAATAA
1 AAATA -AAATA AAATA -AAATA AAATA AAATA AAATA AAATA AAAT-A
36034365 AAATA AA
1 AAATA AA
36034372 CATCGGTGGA
Statistics
Matches: 79, Mismatches: 11, Indels: 19
0.72 0.10 0.17
Matches are distributed among these distances:
4 8 0.10
5 35 0.44
6 29 0.37
7 6 0.08
8 1 0.01
ACGTcount: A:0.73, C:0.05, G:0.01, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:36034345 original size:31 final size:31
Alignment explanation
Indices: 36034268--36034352 Score: 77
Period size: 31 Copynumber: 2.7 Consensus size: 31
36034258 ATGAACACAT
*
36034268 AAATAAATAAATATCAAATAAAACAATAATAA
1 AAATAAATAAA-ATAAAATAAAACAATAATAA
* * *
36034300 CAATAACA-ATAAT-AAATAAAA-ATATCTATAA
1 AAATAA-ATAAAATAAAATAAAACA-AT-AATAA
36034331 AAATAAATAAAATAAAATAAAA
1 AAATAAATAAAATAAAATAAAA
36034353 TAAAAGAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
29 1 0.02
30 11 0.26
31 15 0.35
32 15 0.35
33 1 0.02
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (31 bp):
AAATAAATAAAATAAAATAAAACAATAATAA
Found at i:36034354 original size:19 final size:19
Alignment explanation
Indices: 36034268--36034371 Score: 61
Period size: 19 Copynumber: 5.1 Consensus size: 19
36034258 ATGAACACAT
*
36034268 AAATAAATAAATATCAAATA
1 AAATAAATAAA-ATAAAATA
*
36034288 AAACAATAATAACAATAACAAT-
1 AAA-TA-AATAA-AATAA-AATA
**
36034310 -AATAAATAAAAATATCTATAA
1 AAATAAAT-AAAATA-AAAT-A
36034331 AAATAAATAAAATAAAATA
1 AAATAAATAAAATAAAATA
36034350 AAATAAA-AGAAATAAAAATA
1 AAATAAATA-AAAT-AAAATA
36034370 AA
1 AA
36034372 CATCGGTGGA
Statistics
Matches: 66, Mismatches: 7, Indels: 22
0.69 0.07 0.23
Matches are distributed among these distances:
18 1 0.02
19 21 0.32
20 16 0.24
21 9 0.14
22 15 0.23
23 4 0.06
ACGTcount: A:0.73, C:0.05, G:0.01, T:0.21
Consensus pattern (19 bp):
AAATAAATAAAATAAAATA
Found at i:36034367 original size:10 final size:9
Alignment explanation
Indices: 36034329--36034367 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
36034319 AAATATCTAT
36034329 AAAAATAAA
1 AAAAATAAA
*
36034338 TAAAATAAA
1 AAAAATAAA
36034347 ATAAAATAAA
1 A-AAAATAAA
*
36034357 AGAAATAAA
1 AAAAATAAA
36034366 AA
1 AA
36034368 TAAACATCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (9 bp):
AAAAATAAA
Found at i:36035087 original size:7 final size:7
Alignment explanation
Indices: 36035070--36035153 Score: 89
Period size: 7 Copynumber: 12.0 Consensus size: 7
36035060 ATGTTGTGAC
*
36035070 AAACCTT
1 AAACCCT
*
36035077 AAACCCC
1 AAACCCT
36035084 AAA-CCT
1 AAACCCT
*
36035090 CAGACCCT
1 -AAACCCT
*
36035098 AAACCCC
1 AAACCCT
*
36035105 AAACCCC
1 AAACCCT
*
36035112 AGACCCT
1 AAACCCT
*
36035119 AAACCAT
1 AAACCCT
36035126 AAACCCT
1 AAACCCT
36035133 AAACCCT
1 AAACCCT
36035140 AAACCCT
1 AAACCCT
36035147 AAACCCT
1 AAACCCT
36035154 CAGCCCTGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
6 2 0.03
7 59 0.92
8 3 0.05
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:36035190 original size:7 final size:7
Alignment explanation
Indices: 36035150--36035214 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
36035140 AAACCCTAAA
*
36035150 CCCTCAG
1 CCCTGAG
36035157 CCCTGAG
1 CCCTGAG
*
36035164 CCCCGAG
1 CCCTGAG
36035171 -CCTCGAG
1 CCCT-GAG
36035178 CCCTGAG
1 CCCTGAG
*
36035185 CTCTGAG
1 CCCTGAG
* *
36035192 CCTTGAC
1 CCCTGAG
36035199 CCCTGAG
1 CCCTGAG
*
36035206 CTCTGAG
1 CCCTGAG
36035213 CC
1 CC
36035215 TTGACCCCAG
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
6 2 0.04
7 40 0.89
8 3 0.07
ACGTcount: A:0.14, C:0.45, G:0.25, T:0.17
Consensus pattern (7 bp):
CCCTGAG
Found at i:36035216 original size:21 final size:21
Alignment explanation
Indices: 36035157--36035222 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
36035147 AAACCCTCAG
* * * *
36035157 CCCTGAGCCCCGAGCCTCGAG
1 CCCTGAGCTCTGAGCCTTGAC
36035178 CCCTGAGCTCTGAGCCTTGAC
1 CCCTGAGCTCTGAGCCTTGAC
36035199 CCCTGAGCTCTGAGCCTTGAC
1 CCCTGAGCTCTGAGCCTTGAC
36035220 CCC
1 CCC
36035223 AGACCCAGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.14, C:0.44, G:0.24, T:0.18
Consensus pattern (21 bp):
CCCTGAGCTCTGAGCCTTGAC
Found at i:36035246 original size:20 final size:20
Alignment explanation
Indices: 36035218--36035268 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
36035208 CTGAGCCTTG
*
36035218 ACCCCAGACCCAGACCTAAA
1 ACCCTAGACCCAGACCTAAA
36035238 ACCCTAGACCCAGACCTAAA
1 ACCCTAGACCCAGACCTAAA
*
36035258 ACCATAGACCC
1 ACCCTAGACCC
36035269 TAAACCCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.43, G:0.10, T:0.08
Consensus pattern (20 bp):
ACCCTAGACCCAGACCTAAA
Found at i:36035277 original size:7 final size:7
Alignment explanation
Indices: 36035265--36035318 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
36035255 AAAACCATAG
36035265 ACCCTAA
1 ACCCTAA
36035272 ACCCTAA
1 ACCCTAA
*
36035279 ACCCTCA
1 ACCCTAA
*
36035286 ACCCTCA
1 ACCCTAA
* *
36035293 ACCCCAG
1 ACCCTAA
* *
36035300 ACCCCAG
1 ACCCTAA
36035307 ACCCTAA
1 ACCCTAA
36035314 ACCCT
1 ACCCT
36035319 CAGCCCTGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.33, C:0.52, G:0.04, T:0.11
Consensus pattern (7 bp):
ACCCTAA
Found at i:36035289 original size:14 final size:14
Alignment explanation
Indices: 36035265--36035325 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 14
36035255 AAAACCATAG
*
36035265 ACCCTAAACCCTAA
1 ACCCTAAACCCTCA
*
36035279 ACCCTCAACCCTCA
1 ACCCTAAACCCTCA
* *
36035293 ACCCCAGACCC-CA
1 ACCCTAAACCCTCA
36035306 GACCCTAAACCCTCA
1 -ACCCTAAACCCTCA
*
36035321 GCCCT
1 ACCCT
36035326 GAGCCTTGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
13 2 0.05
14 33 0.89
15 2 0.05
ACGTcount: A:0.31, C:0.52, G:0.05, T:0.11
Consensus pattern (14 bp):
ACCCTAAACCCTCA
Found at i:36035289 original size:21 final size:21
Alignment explanation
Indices: 36035263--36035318 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
36035253 CTAAAACCAT
36035263 AGACCCTAAACCCTAAACCCTC
1 AGACCCTAAACCCTAAACCC-C
* * *
36035285 A-ACCCTCAACCCCAGACCCC
1 AGACCCTAAACCCTAAACCCC
36035305 AGACCCTAAACCCT
1 AGACCCTAAACCCT
36035319 CAGCCCTGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 2 0.07
21 25 0.89
22 1 0.04
ACGTcount: A:0.34, C:0.50, G:0.05, T:0.11
Consensus pattern (21 bp):
AGACCCTAAACCCTAAACCCC
Found at i:36035344 original size:21 final size:21
Alignment explanation
Indices: 36035320--36035404 Score: 107
Period size: 21 Copynumber: 4.0 Consensus size: 21
36035310 CTAAACCCTC
* *
36035320 AGCCCTGAGCCTTGAGCCCTG
1 AGCCTTGAGCCCTGAGCCCTG
* *
36035341 AGCCTTGAGCCCCGAGCCCCG
1 AGCCTTGAGCCCTGAGCCCTG
36035362 AGCCTTGAGCCCTGAGCCCTG
1 AGCCTTGAGCCCTGAGCCCTG
* * *
36035383 AGCTTTAAGCCCTAAGCCCTG
1 AGCCTTGAGCCCTGAGCCCTG
36035404 A
1 A
36035405 ACCCTGAACC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.18, C:0.39, G:0.26, T:0.18
Consensus pattern (21 bp):
AGCCTTGAGCCCTGAGCCCTG
Found at i:36035349 original size:7 final size:7
Alignment explanation
Indices: 36035315--36035416 Score: 96
Period size: 7 Copynumber: 14.6 Consensus size: 7
36035305 AGACCCTAAA
*
36035315 CCCTCAG
1 CCCTGAG
36035322 CCCTGAG
1 CCCTGAG
*
36035329 CCTTGAG
1 CCCTGAG
36035336 CCCTGAG
1 CCCTGAG
*
36035343 CCTTGAG
1 CCCTGAG
*
36035350 CCCCGAG
1 CCCTGAG
*
36035357 CCCCGAG
1 CCCTGAG
*
36035364 CCTTGAG
1 CCCTGAG
36035371 CCCTGAG
1 CCCTGAG
36035378 CCCTGAG
1 CCCTGAG
** *
36035385 CTTTAAG
1 CCCTGAG
*
36035392 CCCTAAG
1 CCCTGAG
*
36035399 CCCTGAA
1 CCCTGAG
*
36035406 CCCTGAA
1 CCCTGAG
36035413 CCCT
1 CCCT
36035417 AAAAACTTTA
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 79 1.00
ACGTcount: A:0.18, C:0.42, G:0.23, T:0.18
Consensus pattern (7 bp):
CCCTGAG
Found at i:36035441 original size:14 final size:14
Alignment explanation
Indices: 36035432--36035490 Score: 73
Period size: 14 Copynumber: 4.1 Consensus size: 14
36035422 CTTTAAGCCT
*
36035432 TAAACCTTAAGCCC
1 TAAACCTTAAACCC
* *
36035446 TAAGCCTTAAAACC
1 TAAACCTTAAACCC
36035460 TAAACCTTAAACCC
1 TAAACCTTAAACCC
*
36035474 TAAACCCTAAAACCC
1 TAAA-CCTTAAACCC
36035489 TA
1 TA
36035491 CCCTTCAAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
14 27 0.71
15 11 0.29
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCC
Found at i:36035466 original size:6 final size:7
Alignment explanation
Indices: 36035432--36035490 Score: 55
Period size: 7 Copynumber: 8.3 Consensus size: 7
36035422 CTTTAAGCCT
*
36035432 TAAACCT
1 TAAACCC
*
36035439 TAAGCCC
1 TAAACCC
* *
36035446 TAAGCCT
1 TAAACCC
*
36035453 TAAAACC
1 TAAACCC
*
36035460 TAAACCT
1 TAAACCC
36035467 TAAACCC
1 TAAACCC
36035474 TAAACCC
1 TAAACCC
36035481 TAAAACCC
1 T-AAACCC
36035489 TA
1 TA
36035491 CCCTTCAAGC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 35 0.83
8 7 0.17
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:36035495 original size:28 final size:28
Alignment explanation
Indices: 36035432--36035487 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
36035422 CTTTAAGCCT
* * *
36035432 TAAACCTTAAGCCCTAAGCCTTAAAACC
1 TAAACCTTAAACCCTAAACCCTAAAACC
36035460 TAAACCTTAAACCCTAAACCCTAAAACC
1 TAAACCTTAAACCCTAAACCCTAAAACC
36035488 CTACCCTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.34, G:0.04, T:0.20
Consensus pattern (28 bp):
TAAACCTTAAACCCTAAACCCTAAAACC
Found at i:36040540 original size:43 final size:43
Alignment explanation
Indices: 36040483--36041096 Score: 789
Period size: 43 Copynumber: 14.4 Consensus size: 43
36040473 AGCCTCCATC
*
36040483 ACCTTGGTGGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGAT-GCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
36040527 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
36040570 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
36040613 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
36040656 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
36040699 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
36040742 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
36040785 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
*
36040828 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGG-C
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
* * * * * * *
36040870 ACCTTGGTGCATGGATGTGCGGGAGCATCGGACACAATCGGAA
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
* * *** * * * *
36040913 AACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAGACCATCGG-C
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
* * * ** *
36040954 A-CTTCGGTGCTAT-GATGTGAGGGAGCCTCGGACACTGTCGGCA
1 ACCTT-GATGCT-TGGATGTGTGGGAGCCTCAGACACCATCGGTA
* *** *
36040997 ACCTAGGCCCTTGG-TCGTGTGGGAGCCTC-GAGCACCATCGG-C
1 ACCTTGATGCTTGGAT-GTGTGGGAGCCTCAGA-CACCATCGGTA
* * * *
36041039 ACATTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG-C
1 ACCTTGATGCTTGGATGTGTGGGAGCCTCAGA-CACCATCGGTA
* *
36041081 ACCTTGGTGCATGGAT
1 ACCTTGATGCTTGGAT
36041097 AAGCAGGAGC
Statistics
Matches: 519, Mismatches: 41, Indels: 22
0.89 0.07 0.04
Matches are distributed among these distances:
40 2 0.00
41 10 0.02
42 125 0.24
43 373 0.72
44 9 0.02
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (43 bp):
ACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGGTA
Found at i:36041106 original size:42 final size:42
Alignment explanation
Indices: 36041018--36041117 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
36041008 TGGTCGTGTG
* ** *
36041018 GGAGCCTCGAGCACCATCGGCACATTGGTGCTTGGATGTGCG
1 GGAGCCTCGAGCACCATCGGCACATTGGTGCATGGATAAGCA
*
36041060 GGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATAAGCA
1 GGAGCCTCGAGCACCATCGGCACATTGGTGCATGGATAAGCA
*
36041102 GGAGCCTTGAGCACCA
1 GGAGCCTCGAGCACCA
36041118 AAGCTAAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (42 bp):
GGAGCCTCGAGCACCATCGGCACATTGGTGCATGGATAAGCA
Found at i:36041649 original size:43 final size:43
Alignment explanation
Indices: 36041409--36042169 Score: 521
Period size: 43 Copynumber: 17.6 Consensus size: 43
36041399 TCTGGTAGCA
*
36041409 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * * * * *
36041451 TCGGTGCTAGGAT-GTGCAGGAGCCCCAGACACCAACAGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
36041494 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
36041536 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
36041578 TCAGTG--CTGGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACC
1 T-AG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
36041621 TAGGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTGAGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CA--ACC
* * * *
36041667 ATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACC
1 -TAGGC-CCTTGGT-C------GTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * **
36041719 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
36041762 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * *
36041804 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * *
36041847 TAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACTATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** **
36041890 TAAGCCCTTGGTCGTGCATGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
36041933 TAGG-CCTTGGTAGTGCGGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
36041974 TAGGTGCTGGGGT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
36042017 TAGGTCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGG-AACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * ***
36042059 TCGGTGCTATGAT-GTGCGAGAGCCTCGGACATTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
36042102 TAGGCCGTTGGTCATGCGGGAGCCTCGAGCACCATCGG-TACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
36042144 TTGGTGCTTGGAT-GTGCGGGAGCCTC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTC
36042170 CCTTGGTTGT
Statistics
Matches: 563, Mismatches: 122, Indels: 68
0.75 0.16 0.09
Matches are distributed among these distances:
41 6 0.01
42 240 0.43
43 261 0.46
44 2 0.00
46 3 0.01
47 4 0.01
48 7 0.01
49 2 0.00
50 7 0.01
51 4 0.01
52 3 0.01
54 1 0.00
55 23 0.04
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:36041699 original size:55 final size:56
Alignment explanation
Indices: 36041606--36041713 Score: 148
Period size: 55 Copynumber: 1.9 Consensus size: 56
36041596 AGAGCCTCGG
* *
36041606 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTGA
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGCGCACCATCGGTGA
* **
36041662 GCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGCACCATCGG
1 GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAACCTCGCGCACCATCGG
36041714 CAACCTAGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
55 34 0.74
56 12 0.26
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (56 bp):
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGCGCACCATCGGTGA
Found at i:36041736 original size:98 final size:98
Alignment explanation
Indices: 36041567--36041756 Score: 299
Period size: 98 Copynumber: 1.9 Consensus size: 98
36041557 GCCTCGGGCG
* *
36041567 CCATCGGCACCTCAGTGCTGGGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
1 CCATCGGCACCTCAGTGCTGGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGG
*
36041632 TCGTGCGGGAACCTCGGGCACCATCGGTGAGCA
66 TCGTGCGAGAACCTCGGGCACCATCGGTGAGCA
** *
36041665 CCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGG
1 CCATCGGCACCTCAGTGCTGGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGG
** *
36041730 TCGTGCGAGAGGCTCGGGCACTATCGG
66 TCGTGCGAGAACCTCGGGCACCATCGG
36041757 CAAAATAGGC
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 83 1.00
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (98 bp):
CCATCGGCACCTCAGTGCTGGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGG
TCGTGCGAGAACCTCGGGCACCATCGGTGAGCA
Found at i:36041852 original size:85 final size:84
Alignment explanation
Indices: 36041689--36042169 Score: 454
Period size: 85 Copynumber: 5.7 Consensus size: 84
36041679 GTGCTTGGAT
* * * ** * *
36041689 GTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACTA
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGAGAGCCTC-GGCACCA
*
36041753 TCGGCAAAATAGGCCCTTGGTC
63 TCGGCAAACTAGGCCCTTGGTC
* *
36041775 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATC
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGATGTGCGAGAGCCTCG-GCACCATC
*
36041840 GGCAACCTAGGCCCTTGGTC
65 GGCAAACTAGGCCCTTGGTC
* * * * * **
36041860 GTGCGAGAGGCTC-AGGCACTATCGGCAAACTAAGCCCTTGG-TCGTGC-ATGAGCCTCGGGCAC
1 GTGCGGGAGCCTCGA-GCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGA-GAGCCTC-GGCAC
* *
36041922 CATCGGCAAAATAGG-CCTTGGTA
61 CATCGGCAAACTAGGCCCTTGGTC
* * * *
36041945 GTGCGGGAGCCTCG-GCCACCATCGGCCCCTAGGTGCTGGGGTGTGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGAG-CACCATCGGCACCTAGGTGCTTGGATGTGCGAGAGCCTCGG-CACCAT
* *
36042009 CGGCAAACTAGGTCCTTGGTT
64 CGGCAAACTAGGCCCTTGGTC
* * * ***
36042030 GTGCGGGAGCCTCGGGCACCATCGGAACCTCGGTGCTAT-GATGTGCGAGAGCCTCGGACATTGT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCT-TGGATGTGCGAGAGCCTCGG-CACCAT
* *
36042094 CGGCAACCTAGGCCGTTGGTC
64 CGGCAAACTAGGCCCTTGGTC
* * * *
36042115 ATGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTC
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGATGTGCGAGAGCCTC
36042170 CCTTGGTTGT
Statistics
Matches: 326, Mismatches: 53, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
83 2 0.01
84 40 0.12
85 222 0.68
86 61 0.19
87 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (84 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTGCTTGGATGTGCGAGAGCCTCGGCACCATCG
GCAAACTAGGCCCTTGGTC
Found at i:36041888 original size:128 final size:126
Alignment explanation
Indices: 36041660--36042356 Score: 565
Period size: 128 Copynumber: 5.6 Consensus size: 126
36041650 CACCATCGGT
36041660 GAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCC
1 GAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCG-GCACCATCGGCAACCTAGGCC
* *
36041725 CTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTC
65 CTTGGTCGTGCGAGAGCCTC-GGCACTATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC
36041788 GAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCC
1 GAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCG-GCACCATCGGCAACCTAGGCC
* * **
36041853 CTTGGTCGTGCGAGAGGCTCAGGCACTATCGGCAAACTAAGCCCTTGGTCGTGCATGAGCCTC
65 CTTGGTCGTGCGAGAGCCTC-GGCACTATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC
* ** * * * * *
36041916 GGGCACCATCGGCAAAATAGG-CCTTGG-TAGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGG
1 GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGG-CACCATCGGCAACCTAGG
** * * * * *
36041978 TGCTGGGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTTGGTTGTGCGGGAGCCT
63 CCCT-TGGTCGTGCGAGAGCCTCGG-CACTATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCT
36042042 C
126 C
* * * * ***
36042043 GGGCACCATCGGAACCTCGGTGCTAT-GATGTGCGAGAGCCTCGGACATTGTCGGCAACCTAGGC
1 GAGCACCATCGGCACCTTGGTGCT-TGGATGTGCGAGAACCTCGG-CACCATCGGCAACCTAGGC
* * * * * * * **
36042107 CGTTGGTCATGCGGGAGCCTCGAGCACCATCGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCT-
64 CCTTGGTCGTGCGAGAGCCTCG-GCACTATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTC
* * * * **
36042169 ---C-CC-TTGG----TT-GTGC-GGGA-GCCT-CGGGCACCATCGGCACC-TCGG--TGCTA--
1 GAGCACCATCGGCACCTTGGTGCTTGGATG--TGCGAGAACC-TCGGCACCATCGGCAACCTAGG
* * * * *
36042216 ----TGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTC
63 CCCTTGGTCGTGCGAGAGCCTCGG-CACTATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC
* *
36042276 GAGCACCATCGGCACCTTGGTGCTTGGATATGCGAGAACCTCGCGCACCATCGACAACCTAGGCC
1 GAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCG-GCACCATCGGCAACCTAGGCC
36042341 CTTGGTCGTGCGAGAG
65 CTTGGTCGTGCGAGAG
36042357 GCTNNNNNNN
Statistics
Matches: 452, Mismatches: 73, Indels: 88
0.74 0.12 0.14
Matches are distributed among these distances:
104 1 0.00
105 21 0.05
106 25 0.06
110 1 0.00
111 2 0.00
112 6 0.01
114 5 0.01
115 9 0.02
116 11 0.02
117 9 0.02
118 14 0.03
119 3 0.01
121 6 0.01
122 2 0.00
123 1 0.00
126 6 0.01
127 120 0.27
128 205 0.45
129 5 0.01
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (126 bp):
GAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGGCACCATCGGCAACCTAGGCCC
TTGGTCGTGCGAGAGCCTCGGCACTATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC
Found at i:36042180 original size:21 final size:21
Alignment explanation
Indices: 36042150--36042190 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
36042140 TACCTTGGTG
36042150 CTTGGATGTGCGGGAGCCTCC
1 CTTGGATGTGCGGGAGCCTCC
*
36042171 CTTGGTTGTGCGGGAGCCTC
1 CTTGGATGTGCGGGAGCCTC
36042191 GGGCACCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.27, G:0.39, T:0.27
Consensus pattern (21 bp):
CTTGGATGTGCGGGAGCCTCC
Found at i:36042288 original size:43 final size:40
Alignment explanation
Indices: 36042169--36042352 Score: 143
Period size: 42 Copynumber: 4.3 Consensus size: 40
36042159 GCGGGAGCCT
*
36042169 CCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTCGG
1 CCCTTGG-TGTGCGGGAGCCTC-GGCACCATCGGCACCTAGG
** * **
36042211 TGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGG
1 CCCT-TGGTGTGCGGGAGCCTCGG-CACCATCGGC-ACCTAGG
* *
36042254 CCCTTTGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG
1 CCCTTGGT-GTGCGGGAGCCTCG-GCACCATCGGCACCTAGG
** * * * *
36042296 TGCTTGGATATGCGAGAACCTCGCGCACCATCGACAACCTAGG
1 CCCTTGG-TGTGCGGGAGCCTCG-GCACCATCGGC-ACCTAGG
36042339 CCCTTGGTCGTGCG
1 CCCTTGGT-GTGCG
36042353 AGAGGCTNNN
Statistics
Matches: 109, Mismatches: 25, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.02
42 58 0.53
43 48 0.44
44 1 0.01
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (40 bp):
CCCTTGGTGTGCGGGAGCCTCGGCACCATCGGCACCTAGG
Found at i:36042293 original size:148 final size:148
Alignment explanation
Indices: 36042022--36042309 Score: 504
Period size: 148 Copynumber: 1.9 Consensus size: 148
36042012 CAAACTAGGT
36042022 CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGAACCTCGGTGCTATGATGTGCGAGAGCCTCGG
1 CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGAACCTCGGTGCTATGATGTGCGAGAGCCTCGG
* * *
36042087 ACATTGTCGGCAACCTAGGCCGTTGGTCATGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCT
66 ACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
36042152 TGGATGTGCGGGAGCCTC
131 TGGATATGCGGGAGCCTC
* *
36042170 CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGG
1 CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGAACCTCGGTGCTATGATGTGCGAGAGCCTCGG
* *
36042235 ACACTGTCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
66 ACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
36042300 TGGATATGCG
131 TGGATATGCG
36042310 AGAACCTCGC
Statistics
Matches: 132, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
148 132 1.00
ACGTcount: A:0.14, C:0.29, G:0.35, T:0.22
Consensus pattern (148 bp):
CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGAACCTCGGTGCTATGATGTGCGAGAGCCTCGG
ACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATATGCGGGAGCCTC
Found at i:36042318 original size:85 final size:85
Alignment explanation
Indices: 36042169--36042352 Score: 246
Period size: 85 Copynumber: 2.2 Consensus size: 85
36042159 GCGGGAGCCT
* * * * *
36042169 CCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCG
1 CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTATGATATGCGAGAACCTCG
** *
36042234 -GACACTGTCGGCAACCTAGG
66 CG-CACCATCGACAACCTAGG
* *
36042254 CCCTTTGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT-TGGATATGCGAGAACCTC
1 CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTAT-GATATGCGAGAACCTC
36042318 GCGCACCATCGACAACCTAGG
65 GCGCACCATCGACAACCTAGG
36042339 CCCTTGGTCGTGCG
1 CCCTTGGTCGTGCG
36042353 AGAGGCTNNN
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
84 1 0.01
85 84 0.98
86 1 0.01
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (85 bp):
CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTATGATATGCGAGAACCTCG
CGCACCATCGACAACCTAGG
Found at i:36042633 original size:43 final size:43
Alignment explanation
Indices: 36042572--36042697 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 43
36042562 NNNNNNNNNN
* *
36042572 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCG
* ** ** *
36042615 GGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCG
*
36042657 GGAGCCTCGGACACCATCGGTAAACTAGGCCCTTGGTCGTG
1 GGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTG
36042698 ATGGTTTTCA
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 33 0.50
43 33 0.50
ACGTcount: A:0.17, C:0.31, G:0.35, T:0.17
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCG
Found at i:36043195 original size:127 final size:127
Alignment explanation
Indices: 36043052--36043457 Score: 794
Period size: 127 Copynumber: 3.2 Consensus size: 127
36043042 GCCCTTGGTC
36043052 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
36043117 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGAT
66 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGAT
36043179 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
36043244 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGAT
66 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGAT
36043306 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
*
36043371 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
66 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGAT
*
36043433 GTGCGGGAGCCTCGGGCAGCATCGG
1 GTGCGGGAGCCTCGGGCACCATCGG
36043458 CACCTCGGTG
Statistics
Matches: 277, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 277 1.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.19
Consensus pattern (127 bp):
GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGAT
Found at i:36043395 original size:85 final size:83
Alignment explanation
Indices: 36042825--36043548 Score: 451
Period size: 85 Copynumber: 8.5 Consensus size: 83
36042815 GTCCGTGACA
* * ** * *
36042825 CTAGGCCCTTGGTGGTGCGAGAGCCTCGAGCACCATCAGCACCTCGGTGCTATGAT-GGGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCAGCACCTCGGCCCT-TGGTCGTGCGGGA
* **
36042889 GCCTCGGACACTGTCGGCAAC
64 GCCTCGGGCACCATCGG-AAC
* * ** *
36042910 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAACACCTTGGTGCTTGGAT-TTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCAGCACCTCGGCCCTTGG-TCGTGCGGGA
* *
36042974 ACCTCGGGCACCATCTGCAAC
64 GCCTCGGGCACCATC-GGAAC
* * * * * **
36042995 CTAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCAG-CACCTCGGCCCTTGGTCGTGCGGGA
*
36043060 GCCTCGGGCACCATCGGTAAA
64 GCCTCGGGCACCATCGG-AAC
* * *
36043081 ATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAGCACCTCGGCCCTTGGTCGTGC-GTAG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCAGCACCTCGGCCCTTGGTCGTGCGGGAG
* * * *
36043145 TCTCGAGCCCCATCGGCAC
65 CCTCGGGCACCATCGGAAC
* ** * * * ** *
36043164 CTTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGG
1 CTAGG-CCCTTGG-TCGTGCGGGAGCCTC-GGCACCATCAG-CACCTCGGCCCTTGGTCGTGCGG
* * * *
36043228 GGGCCTCGGCCACCATCAGCAC
62 GAGCCTCGGGCACCATCGGAAC
* * * * * * ** *
36043250 CTCGGCCCTTGGTCGTGC-GTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGAT-GTGCGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCAGCACCTCGG-CCCTTGG-TCGTGCGGG
*
36043313 AGCCTCGGGCACCATCGGTAAA
63 AGCCTCGGGCACCATCGG-AAC
* * *
36043335 ATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAGCACCTCGGCCCTTGGTCGTGC-GTAG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCAGCACCTCGGCCCTTGGTCGTGCGGGAG
* * *
36043399 TCTCGAGCACCATCGGCAC
65 CCTCGGGCACCATCGGAAC
* ** * * * ** * **
36043418 CTTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGCACCTCGGTGGCTAGGAGGTGCGG
1 CTAGG-CCCTTGG-TCGTGCGGGAGCCTC-GGCACCATCAGCACCTCGG-CCCTTGGTCGTGCGG
*
36043482 GAGCCTCGGACACCATCGGCAA-
62 GAGCCTCGGGCACCATCGG-AAC
* ** *
36043504 CTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCACCT
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGCA-CCATCAGCACCT
36043549 TGGTGCCTGG
Statistics
Matches: 497, Mismatches: 115, Indels: 53
0.75 0.17 0.08
Matches are distributed among these distances:
83 13 0.03
84 133 0.27
85 213 0.43
86 137 0.28
87 1 0.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (83 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCAGCACCTCGGCCCTTGGTCGTGCGGGAGC
CTCGGGCACCATCGGAAC
Found at i:36043482 original size:254 final size:256
Alignment explanation
Indices: 36043052--36043568 Score: 781
Period size: 254 Copynumber: 2.0 Consensus size: 256
36043042 GCCCTTGGTC
36043052 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
*
36043117 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCCCCATCGGCACCTTGGTGGCTCGGATGTG
66 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTG
* * * *
36043182 CGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAG
131 CGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTAGGACGTGCGGGAGCCTCGGACACCATCAG
* * * *
36043247 CACCTCGGCCCTTGG-TCGTGC-GTAGTCTCGAGC-CCCATCGGCACCTTGGTGGCTCGGAT
196 CAACTCGGCCCTTGGAT-GTGCGGGAGCCTCGAGCACCCATCGGCACCTTGGTGCCTCGGAT
36043306 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
36043371 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTG
66 CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTG
* * ** * ** * *
36043436 CGGGAGCCTCGGGCAGCATCGG-CACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCG
131 CGGGAGCCTCGGGCACCATCGGTAAAATAGG-CCCTAGGACGTGCGGGAGCCTCGGACACCATCA
* ** * *
36043500 GCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
195 GCAACTCGGCCCTTGGATGTGCGGGAGCCTCGAGCACCCATCGGCACCTTGGTGCCTCGGAT
36043562 GTGCGGG
1 GTGCGGG
36043569 CTAAAGAAGA
Statistics
Matches: 236, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
253 4 0.02
254 191 0.81
255 10 0.04
256 31 0.13
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.19
Consensus pattern (256 bp):
GTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
CAGCACCTCGGCCCTTGGTCGTGCGTAGTCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTG
CGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTAGGACGTGCGGGAGCCTCGGACACCATCAG
CAACTCGGCCCTTGGATGTGCGGGAGCCTCGAGCACCCATCGGCACCTTGGTGCCTCGGAT
Found at i:36043554 original size:43 final size:42
Alignment explanation
Indices: 36042825--36043548 Score: 485
Period size: 43 Copynumber: 17.0 Consensus size: 42
36042815 GTCCGTGACA
* * * *
36042825 CTAGGCCCTTGGTGGTGCGAGAGCCTCGAGCACCATCAGCAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** * * * **
36042867 CTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAAC
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
* **
36042910 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAACAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** * * *
36042952 CTTGGTGCTTGGAT-TTGCGGGAACCTCGGGCACCATCTGCAAC
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-AC
* * * * *
36042995 CTAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACCATCGGTAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CAC
* * *
36043038 CTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CAC
* * * *
36043081 ATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAGCAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * * *
36043123 CTCGGCCCTTGGTCGTGC-GTAGTCTCGAGCCCCATCGGCAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** * * *
36043164 CTTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAAA
1 CTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CAC
* * * *
36043208 ATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAGCAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * * *
36043250 CTCGGCCCTTGGTCGTGC-GTAGTCTCGAGCCCCATCGGCAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** * * *
36043291 CTTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAAA
1 CTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CAC
* * * *
36043335 ATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAGCAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * *
36043377 CTCGGCCCTTGGTCGTGC-GTAGTCTCGAGCACCATCGGCAC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** * *
36043418 CTTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGCAC
1 CTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** * ** * *
36043461 CTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAA
1 CTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* **
36043504 CTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCAC
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCAC
36043547 CT
1 CT
36043549 TGGTGCCTGG
Statistics
Matches: 521, Mismatches: 138, Indels: 45
0.74 0.20 0.06
Matches are distributed among these distances:
41 61 0.12
42 160 0.31
43 292 0.56
44 8 0.02
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (42 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
Found at i:36044963 original size:43 final size:42
Alignment explanation
Indices: 36044897--36045015 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
36044887 AGCTCGTACA
**
36044897 ATGCCAACATCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGTAATCAAATA-CG
* * * * *
36044940 ATGCCACTGTCTCAGACAGGGTCTTACACGAAATCAGATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATACG
* *
36044982 ATGCTAATGTCCCAGACATGGTCTTACATGTAAT
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAAT
36045016 TCTCAAATTG
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 30 0.48
43 31 0.50
44 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATACG
Found at i:36046942 original size:14 final size:14
Alignment explanation
Indices: 36046923--36046949 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36046913 TGAAAAGAAG
36046923 TAAAAAAATCGAGT
1 TAAAAAAATCGAGT
36046937 TAAAAAAATCGAG
1 TAAAAAAATCGAG
36046950 ATTGGTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.15, T:0.19
Consensus pattern (14 bp):
TAAAAAAATCGAGT
Found at i:36047649 original size:17 final size:18
Alignment explanation
Indices: 36047627--36047662 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
36047617 AAGAAATAAA
*
36047627 AGAAAGAG-TGGAAAAAG
1 AGAAAGAGCTAGAAAAAG
36047644 AGAAAGAGCTAGAAAAAG
1 AGAAAGAGCTAGAAAAAG
36047662 A
1 A
36047663 AATGAGTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.61, C:0.03, G:0.31, T:0.06
Consensus pattern (18 bp):
AGAAAGAGCTAGAAAAAG
Found at i:36057032 original size:18 final size:18
Alignment explanation
Indices: 36056999--36057044 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
36056989 AACCCAATCA
* *
36056999 TAAAAATTACAAATAATT
1 TAAAAAATAAAAATAATT
*
36057017 TAATAAATAAAAATAATT
1 TAAAAAATAAAAATAATT
36057035 TAAAAAATAA
1 TAAAAAATAA
36057045 TATATAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAAAATAAAAATAATT
Found at i:36057193 original size:17 final size:17
Alignment explanation
Indices: 36057173--36057233 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
36057163 ATTTCAAGAT
36057173 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* **
36057190 TTATGTAGTGATTTAAAGA
1 TTATGTAATG-TTTTTA-A
*
36057209 CTTATGTAATATTTTTAA
1 -TTATGTAATGTTTTTAA
36057227 TTATGTA
1 TTATGTA
36057234 GTGATTTAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 16 0.47
18 5 0.15
19 5 0.15
20 8 0.24
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:36057214 original size:37 final size:37
Alignment explanation
Indices: 36057163--36057242 Score: 133
Period size: 37 Copynumber: 2.2 Consensus size: 37
36057153 TTATGTGTTA
* * *
36057163 ATTTCAAGATTTATGTAATGTTTTTAATTATGTAGTG
1 ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
36057200 ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
36057237 ATTTAA
1 ATTTAA
36057243 TTCGGTTAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.50
Consensus pattern (37 bp):
ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
Found at i:36057215 original size:20 final size:18
Alignment explanation
Indices: 36057188--36057242 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
36057178 TAATGTTTTT
36057188 AATTATGTAGTGATTTAA
1 AATTATGTAGTGATTTAA
* **
36057206 AGACTTATGTAAT-ATTTTT
1 A-A-TTATGTAGTGATTTAA
36057225 AATTATGTAGTGATTTAA
1 AATTATGTAGTGATTTAA
36057243 TTCGGTTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
17 8 0.29
18 6 0.21
19 6 0.21
20 8 0.29
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (18 bp):
AATTATGTAGTGATTTAA
Found at i:36066250 original size:8 final size:8
Alignment explanation
Indices: 36066237--36066265 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
36066227 TATAATAAAT
36066237 TTTTTTTA
1 TTTTTTTA
36066245 TTTTTTTA
1 TTTTTTTA
36066253 TTTTTTTA
1 TTTTTTTA
36066261 TTTTT
1 TTTTT
36066266 AAAATACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTA
Found at i:36066299 original size:10 final size:10
Alignment explanation
Indices: 36066284--36066345 Score: 60
Period size: 10 Copynumber: 6.4 Consensus size: 10
36066274 TTTAAAATAC
36066284 TTTTTTTAAA
1 TTTTTTTAAA
36066294 TTTTTTTAAA
1 TTTTTTTAAA
36066304 ---TTTTAAA
1 TTTTTTTAAA
*
36066311 TTTTTTAAAA
1 TTTTTTTAAA
36066321 TACTTTTTT-AA
1 T--TTTTTTAAA
*
36066332 TTTTTTTTAA
1 TTTTTTTAAA
36066342 TTTT
1 TTTT
36066346 AAAATATTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
7 7 0.16
9 6 0.14
10 23 0.52
11 3 0.07
12 5 0.11
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:36066317 original size:40 final size:41
Alignment explanation
Indices: 36066252--36066395 Score: 179
Period size: 40 Copynumber: 3.5 Consensus size: 41
36066242 TTATTTTTTT
* *
36066252 ATTTTTTT-ATTTTTAAAATACTTTTAAAATACTTTTTTTAA
1 ATTTTTTTAAATTTTAAAATATTTTTAAAATAC-TTTTTTAA
36066293 ATTTTTTTAAATTTT-AAAT-TTTTTAAAATACTTTTTT-A
1 ATTTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTAA
* *
36066331 ATTTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
1 ATTTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTAA
*
36066372 ATTTTTGTTTTAATTTTTAAAATA
1 A--TTT-TTTTAAATTTTAAAATA
36066396 AATTTTTGGT
Statistics
Matches: 90, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
38 15 0.17
39 10 0.11
40 28 0.31
41 14 0.16
42 5 0.06
43 3 0.03
44 15 0.17
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (41 bp):
ATTTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTAA
Found at i:36066367 original size:29 final size:29
Alignment explanation
Indices: 36066313--36066370 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
36066303 ATTTTAAATT
* **
36066313 TTTTAAAATACTTTTTTAATTTTTTTTAA
1 TTTTAAAATACTTTTTAAATACTTTTTAA
36066342 TTTTAAAATA-TTTTTAAAATACTTTTTAA
1 TTTTAAAATACTTTTT-AAATACTTTTTAA
36066371 AATTTTTGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (29 bp):
TTTTAAAATACTTTTTAAATACTTTTTAA
Found at i:36066369 original size:12 final size:11
Alignment explanation
Indices: 36066259--36066377 Score: 64
Period size: 11 Copynumber: 11.5 Consensus size: 11
36066249 TTTATTTTTT
36066259 TATTTTTAAAA
1 TATTTTTAAAA
*
36066270 TACTTTTAAAA
1 TATTTTTAAAA
*
36066281 TACTTTTTTTAAA
1 TA--TTTTTAAAA
*
36066294 T-TTTTT-TAA
1 TATTTTTAAAA
36066303 -A-TTTT-AAA
1 TATTTTTAAAA
36066311 T-TTTTTAAAA
1 TATTTTTAAAA
*
36066321 TACTTTTT-TAA
1 TA-TTTTTAAAA
*
36066332 T-TTTTT---T
1 TATTTTTAAAA
*
36066339 TAATTTTAAAA
1 TATTTTTAAAA
36066350 TATTTTTAAAA
1 TATTTTTAAAA
36066361 TACTTTTTAAAA
1 TA-TTTTTAAAA
36066373 T-TTTT
1 TATTTT
36066378 GTTTTAATTT
Statistics
Matches: 85, Mismatches: 10, Indels: 27
0.70 0.08 0.22
Matches are distributed among these distances:
7 1 0.01
8 10 0.12
9 11 0.13
10 13 0.15
11 27 0.32
12 15 0.18
13 8 0.09
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:36068140 original size:43 final size:42
Alignment explanation
Indices: 36068093--36068294 Score: 225
Period size: 43 Copynumber: 4.8 Consensus size: 42
36068083 TGTAATCTCG
*
36068093 TATCGATGCCAATAG-CCTAGCTATGGTCTTACACGAAATCACA
1 TATCGATGCCAAT-GTCCCAGC-ATGGTCTTACACGAAATCACA
*
36068136 TATCGATGCCACTGTCCCAGACATGGTCTTACACGAAATCAC-
1 TATCGATGCCAATGTCCCAG-CATGGTCTTACACGAAATCACA
* *
36068178 -ATCGATGCCAATGTCCCAGACATGGTCTTACACGAATTCTCA
1 TATCGATGCCAATGTCCCAG-CATGGTCTTACACGAAATCACA
* *
36068220 TATCGATGCCAATGTCCCAAACATGGTCTTACAC-AAATTCTCA
1 TATCGATGCCAATGTCCC-AGCATGGTCTTACACGAAA-TCACA
* * *
36068263 TATAGATGCC-ATATCCCAGATATGGTCTTACA
1 TATCGATGCCAATGTCCCAG-CATGGTCTTACA
36068295 TGTAACCTCG
Statistics
Matches: 141, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
41 39 0.28
42 20 0.14
43 80 0.57
44 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (42 bp):
TATCGATGCCAATGTCCCAGCATGGTCTTACACGAAATCACA
Found at i:36068203 original size:84 final size:84
Alignment explanation
Indices: 36068094--36068294 Score: 248
Period size: 84 Copynumber: 2.4 Consensus size: 84
36068084 GTAATCTCGT
* * *
36068094 ATCGATGCCAATAG-CCTAG-CTATGGTCTTACACGAAATCACATATCGATGCCACTGTCCCAGA
1 ATCGATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAAATCACATATCGATGCCAATGTCCCAAA
36068157 CATGGTCTTACACGAAA-TCAC
64 CATGGTCTTACAC-AAATTCAC
* *
36068178 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAATTCTCATATCGATGCCAATGTCCCAAACA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAATGTCCCAAACA
*
36068243 TGGTCTTACACAAATTCTCAT
66 TGGTCTTACACAAA-T-TCAC
* * *
36068264 ATAGATGCC-ATATCCCAGATATGGTCTTACA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACA
36068295 TGTAACCTCG
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
83 4 0.04
84 67 0.65
85 21 0.20
86 11 0.11
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (84 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAATGTCCCAAACA
TGGTCTTACACAAATTCAC
Found at i:36071690 original size:21 final size:22
Alignment explanation
Indices: 36071664--36071706 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
36071654 AAGTTGAATT
36071664 TAAAGTTATGAAT-TAT-ATATA
1 TAAAGTT-TGAATGTATGATATA
36071685 TAAAGTTTGAATGTATGATATA
1 TAAAGTTTGAATGTATGATATA
36071707 AGTTCTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (22 bp):
TAAAGTTTGAATGTATGATATA
Found at i:36071705 original size:20 final size:21
Alignment explanation
Indices: 36071664--36071707 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
36071654 AAGTTGAATT
*
36071664 TAAAGTTATGAATTATATATA
1 TAAAGTTATGAATTATAGATA
36071685 TAAAGTT-TGAATGTAT-GATA
1 TAAAGTTATGAAT-TATAGATA
36071705 TAA
1 TAA
36071708 GTTCTTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
TAAAGTTATGAATTATAGATA
Done.