Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 117 of 185
Found at i:36385534 original size:28 final size:26
Alignment explanation
Indices: 36385503--36385562 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
36385493 ATTATCGTAT
* *
36385503 TTTTTGTAAATTTTATTTTTATATATAA
1 TTTTTG-AAATTTTATATATATATAT-A
*
36385531 TTTTCTGAATTTTTATATATATATATA
1 TTTT-TGAAATTTTATATATATATATA
36385558 TTTTT
1 TTTTT
36385563 ATTTTTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.04
27 5 0.18
28 20 0.71
29 2 0.07
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (26 bp):
TTTTTGAAATTTTATATATATATATA
Found at i:36388711 original size:19 final size:19
Alignment explanation
Indices: 36388681--36388749 Score: 56
Period size: 18 Copynumber: 3.7 Consensus size: 19
36388671 ATAAAAATTC
36388681 AAATAT-TA-AAAATTAAA
1 AAATATATATAAAATTAAA
*
36388698 AAATATATATAAAAATTGTAA
1 AAATATATAT-AAAATT-AAA
* *
36388719 AAATATA-AAAAAATTATA
1 AAATATATATAAAATTAAA
*
36388737 AAAT-TTTATAAAA
1 AAATATATATAAAA
36388750 ATAGTAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
17 7 0.17
18 12 0.29
19 6 0.15
20 7 0.17
21 9 0.22
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (19 bp):
AAATATATATAAAATTAAA
Found at i:36388730 original size:38 final size:37
Alignment explanation
Indices: 36388681--36388767 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 37
36388671 ATAAAAATTC
* *
36388681 AAATATTAAAAATTAAAAAATATATATAAAAATTGTAA
1 AAATATAAAAAATTAAAAAAT-TATATAAAAATAGTAA
* *
36388719 AAATATAAAAAAATTATAAAATTTTATAAAAATAGTAA
1 AAATAT-AAAAAATTAAAAAATTATATAAAAATAGTAA
*
36388757 AATGTATAAAA
1 AA-ATATAAAA
36388768 TATATAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 26 0.62
39 16 0.38
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (37 bp):
AAATATAAAAAATTAAAAAATTATATAAAAATAGTAA
Found at i:36388745 original size:10 final size:9
Alignment explanation
Indices: 36388709--36388793 Score: 50
Period size: 9 Copynumber: 9.3 Consensus size: 9
36388699 AATATATATA
36388709 AAAATTGTA-
1 AAAATT-TAT
* *
36388718 AAAATATAA
1 AAAATTTAT
*
36388727 AAAAATTAT
1 AAAATTTAT
36388736 AAAATTTTAT
1 AAAA-TTTAT
*
36388746 AAAA-ATAGT
1 AAAATTTA-T
*
36388755 AAAATGTAT
1 AAAATTTAT
*
36388764 AAAATATAT
1 AAAATTTAT
*
36388773 AGAA-TTAT
1 AAAATTTAT
36388781 AAAATTTTAT
1 AAAA-TTTAT
36388791 AAA
1 AAA
36388794 GTCGTAATAA
Statistics
Matches: 59, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
8 10 0.17
9 32 0.54
10 17 0.29
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (9 bp):
AAAATTTAT
Found at i:36388748 original size:29 final size:30
Alignment explanation
Indices: 36388687--36388758 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 30
36388677 ATTCAAATAT
*
36388687 TAAAAAT-TAAAAAATATATATAAAAATTG
1 TAAAAATATAAAAAATATATATAAAAATTA
*
36388716 TAAAAATATAAAAAA-AT-TATAAAATTTTA
1 TAAAAATATAAAAAATATATATAAAA-ATTA
36388745 TAAAAATAGTAAAA
1 TAAAAATA-TAAAA
36388759 TGTATAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
28 7 0.18
29 19 0.50
30 12 0.32
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (30 bp):
TAAAAATATAAAAAATATATATAAAAATTA
Found at i:36388750 original size:19 final size:19
Alignment explanation
Indices: 36388650--36388781 Score: 80
Period size: 19 Copynumber: 7.1 Consensus size: 19
36388640 CAATAAAAGC
* * *
36388650 TATAAATATTATTAAATTT
1 TATAAAAATTATAAAATTA
*
36388669 TAATAAAAA-T-TCAAA-TA
1 T-ATAAAAATTATAAAATTA
*
36388686 T-TAAAAATTAAAAAATATA
1 TATAAAAATTATAAAAT-TA
* *
36388705 TATAAAAATTGTAAAAATA
1 TATAAAAATTATAAAATTA
* *
36388724 TAAAAAAATTATAAAATTT
1 TATAAAAATTATAAAATTA
*
36388743 TATAAAAA-TAGTAAAA-TG
1 TATAAAAATTA-TAAAATTA
*
36388761 TAT-AAAATATATAGAATTA
1 TATAAAAAT-TATAAAATTA
36388780 TA
1 TA
36388782 AAATTTTATA
Statistics
Matches: 87, Mismatches: 16, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
15 6 0.07
16 1 0.01
17 9 0.10
18 14 0.16
19 39 0.45
20 18 0.21
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (19 bp):
TATAAAAATTATAAAATTA
Found at i:36388786 original size:8 final size:8
Alignment explanation
Indices: 36388728--36388786 Score: 55
Period size: 9 Copynumber: 6.8 Consensus size: 8
36388718 AAAATATAAA
36388728 AAAATTAT
1 AAAATTAT
36388736 AAAATTTTAT
1 AAAA--TTAT
*
36388746 AAAAATAGT
1 AAAATTA-T
36388755 AAAATGTAT
1 AAAAT-TAT
36388764 AAAATATAT
1 AAAAT-TAT
*
36388773 AGAATTAT
1 AAAATTAT
36388781 AAAATT
1 AAAATT
36388787 TTATAAAGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
8 14 0.33
9 18 0.43
10 10 0.24
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (8 bp):
AAAATTAT
Found at i:36388981 original size:19 final size:19
Alignment explanation
Indices: 36388957--36388993 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36388947 GGACATGTGA
* *
36388957 TGACTTTGATTGAAAAAAT
1 TGACTTTAACTGAAAAAAT
36388976 TGACTTTAACTGAAAAAA
1 TGACTTTAACTGAAAAAA
36388994 CTAAGGGTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (19 bp):
TGACTTTAACTGAAAAAAT
Found at i:36389062 original size:20 final size:20
Alignment explanation
Indices: 36389017--36389068 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
36389007 ATTTTTTATG
36389017 ATTTTTATTAAAAAAATTGCA
1 ATTTTTA-TAAAAAAATTGCA
*
36389038 ATTTTTATAAAAAAATT-CT
1 ATTTTTATAAAAAAATTGCA
36389057 ATTTTTAATAAA
1 ATTTTT-ATAAA
36389069 TTTTAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 7 0.24
20 15 0.52
21 7 0.24
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (20 bp):
ATTTTTATAAAAAAATTGCA
Found at i:36389100 original size:36 final size:36
Alignment explanation
Indices: 36389060--36389134 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
36389050 AAATTCTATT
*
36389060 TTTAATAAATTTTAAATTTTTTATA-TTTTATTCTAA
1 TTTAATAAATTTTAAATTTTTTATACTTTT-TCCTAA
* ** *
36389096 TTTAATAATTTTTCTATTTTTTTTACTTTTTCCTAA
1 TTTAATAAATTTTAAATTTTTTATACTTTTTCCTAA
36389132 TTT
1 TTT
36389135 TTAATAAGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
36 29 0.88
37 4 0.12
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (36 bp):
TTTAATAAATTTTAAATTTTTTATACTTTTTCCTAA
Found at i:36389260 original size:89 final size:88
Alignment explanation
Indices: 36389146--36389348 Score: 255
Period size: 89 Copynumber: 2.3 Consensus size: 88
36389136 TAATAAGAGT
* *
36389146 AGGGCTTAATTGCTTTTTTGAAAAAATTTAAAGGACTTTTCGATGTATTTTAAAAGTTCAAGTAC
1 AGGGCTTAATTGCTTTTTTGAAAAAATTT-AAGGACTTTTCAATGCATTTTAAAAGTTCAAGTAC
36389211 CCAATTGAGTAAAAAAAAA-AGGCA
65 CCAATTGAGTAAAAAAAAAGA-GCA
* * * * *
36389235 AGGGCTTAATTGCTTTGTTTGAAAAAATTTGAGGGCTTTTTAATGCATTTTGAAAGTTCAAGTAT
1 AGGGCTTAATTGCTTT-TTTGAAAAAATTTAAGGACTTTTCAATGCATTTTAAAAGTTCAAGTAC
* * * *
36389300 CTAATTGAGTGAAAAAGAAGAGTA
65 CCAATTGAGTAAAAAAAAAGAGCA
*
36389324 AGTGCTTAATTGCTTTTTTTGAAAA
1 AGGGCTTAATTGC-TTTTTTGAAAA
36389349 GTTTGATGAC
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
89 82 0.83
90 17 0.17
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.36
Consensus pattern (88 bp):
AGGGCTTAATTGCTTTTTTGAAAAAATTTAAGGACTTTTCAATGCATTTTAAAAGTTCAAGTACC
CAATTGAGTAAAAAAAAAGAGCA
Found at i:36398840 original size:31 final size:31
Alignment explanation
Indices: 36398805--36398866 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
36398795 AGGCAAATTA
36398805 CAAGAGAAATTGAATCCTAATAAAACTCTTT
1 CAAGAGAAATTGAATCCTAATAAAACTCTTT
*
36398836 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGAAATTGAATCCTAATAAAACTCTTT
36398867 AAAATTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.31
Consensus pattern (31 bp):
CAAGAGAAATTGAATCCTAATAAAACTCTTT
Found at i:36404156 original size:28 final size:28
Alignment explanation
Indices: 36404111--36404165 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
36404101 TTTGCTAAAA
* * * *
36404111 CTTATTTTTCTAATCTAACATTTTTATT
1 CTTATTTTCCAAACCTAACATTATTATT
*
36404139 CTTATTTTCCAAACCTAATATTATTAT
1 CTTATTTTCCAAACCTAACATTATTAT
36404166 GATTTGAGTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (28 bp):
CTTATTTTCCAAACCTAACATTATTATT
Found at i:36404498 original size:22 final size:22
Alignment explanation
Indices: 36404470--36404516 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
36404460 ACAAATCCTA
36404470 TCTCAATTTCCTTCCAAAATCC
1 TCTCAATTTCCTTCCAAAATCC
*
36404492 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCCAAAATCC
36404514 TCT
1 TCT
36404517 TAAACTCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAAATCC
Found at i:36404532 original size:52 final size:52
Alignment explanation
Indices: 36404470--36404568 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
36404460 ACAAATCCTA
* * *
36404470 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAATTCTCTTAAAC
1 TCTCAATTTCCTTACAAAATCCTCTCAATTTCATTCCAAAAATCTCTTAAAC
36404522 TCTCAATTTCCTTACAAAATCCTCTCAATTTCATTCCAAAAATCTCT
1 TCTCAATTTCCTTACAAAATCCTCTCAATTTCATTCCAAAAATCTCT
36404569 CAAATCCATA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.30, C:0.31, G:0.00, T:0.38
Consensus pattern (52 bp):
TCTCAATTTCCTTACAAAATCCTCTCAATTTCATTCCAAAAATCTCTTAAAC
Found at i:36404549 original size:22 final size:22
Alignment explanation
Indices: 36404521--36404571 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
36404511 TTCTCTTAAA
*
36404521 CTCTCAATTTCCTTAC-AAAAT
1 CTCTCAATTTCATTACAAAAAT
*
36404542 CCTCTCAATTTCATTCCAAAAAT
1 -CTCTCAATTTCATTACAAAAAT
36404565 CTCTCAA
1 CTCTCAA
36404572 ATCCATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (22 bp):
CTCTCAATTTCATTACAAAAAT
Found at i:36404639 original size:30 final size:30
Alignment explanation
Indices: 36404605--36404669 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
36404595 CTTCAATTTC
* *
36404605 ATTTTTTTTAAATAATTTCAATTTTTTTAT
1 ATTTTTTTAAAATAATTTCAAATTTTTTAT
*
36404635 ATTTTTTTAAAATAATTTTAAATTTTTTAT
1 ATTTTTTTAAAATAATTTCAAATTTTTTAT
36404665 ATTTT
1 ATTTT
36404670 CATCAATGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (30 bp):
ATTTTTTTAAAATAATTTCAAATTTTTTAT
Found at i:36407059 original size:23 final size:23
Alignment explanation
Indices: 36407029--36408053 Score: 673
Period size: 23 Copynumber: 39.7 Consensus size: 23
36407019 TAAAAATCTT
36407029 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407052 AACCCTAACCCTAGCCTAATTGATTTAAA
1 AACCCT-A----A-CCTAATTTATTTAAA
* *
36407081 AACCTTAACCTAATTTATTAAAA
1 AACCCTAACCTAATTTATTTAAA
36407104 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407127 AACCCTAACCCTAGCCTAATTGATTTAAA
1 AACCCT-A----A-CCTAATTTATTTAAA
* *
36407156 AACCTTAACCTAATTTATTAAAA
1 AACCCTAACCTAATTTATTTAAA
36407179 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407202 AACCCTAACCCTAGCCTAATTGATTTAAA
1 AACCCT-A----A-CCTAATTTATTTAAA
* *
36407231 AACCTTAACCTAATTTATTAAAA
1 AACCCTAACCTAATTTATTTAAA
36407254 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407277 AACCCTAACCCTAGCCTAATTGATTTAAA
1 AACCCT-A----A-CCTAATTTATTTAAA
* *
36407306 AACCTTAACCTAATTTATTAAAA
1 AACCCTAACCTAATTTATTTAAA
36407329 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407352 AACCCTAACCCTAGCCTAATTGATTTAAA
1 AACCCT-A----A-CCTAATTTATTTAAA
* *
36407381 AACCTTAACCTAATTTATTAAAA
1 AACCCTAACCTAATTTATTTAAA
36407404 AACCCTAACCTAATTTATTTAAAAA
1 AACCCTAACCTAATTTATTT--AAA
*
36407429 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTATTTAAA
* *
36407456 ACCCTAACCTTAACCTAATTTAATTAAA
1 A-AC---CC-TAACCTAATTTATTTAAA
*
36407484 AACCCTAACCCTACCCTAATTTAATTAAA
1 AACCCT-A----A-CCTAATTTATTTAAA
* *
36407513 AACCGTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407536 AATCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407559 AACCCTAACCTTAACCTAATTTAATTAAA
1 AA--C---CC-TAACCTAATTTATTTAAA
* *
36407588 AATCTTAACCCTAACCTAATTTATTTAAAAA
1 AACCCT------AACCTAATTTATTT--AAA
*
36407619 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTATTTAAA
* *
36407646 AATCTTAACCCTAACCTAATTTATTTAAAAA
1 AACCCT------AACCTAATTTATTT--AAA
*
36407677 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTATTTAAA
* *
36407704 AATCTTAACCCTAACCTAATTTATTTAAAAA
1 AACCCT------AACCTAATTTATTT--AAA
*
36407735 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTATTTAAA
* *
36407762 AATCTTAACCCTAACCTAATTTATTTAAAAA
1 AACCCT------AACCTAATTTATTT--AAA
*
36407793 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTATTTAAA
* *
36407820 ACCCTAACCTTAACCTAATTTAATTAAA
1 A-AC---CC-TAACCTAATTTATTTAAA
*
36407848 AACCCTAACCCTACCCTAATTTAATTAAA
1 AACCCT-A----A-CCTAATTTATTTAAA
* *
36407877 AACCGTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTATTTAAA
*
36407900 AATCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
36407923 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
36407946 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
36407969 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
36407992 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
36408015 AACCCTAACCTAATTTATTTAAA
1 AACCCTAACCTAATTTATTTAAA
36408038 AACCCTAACCTAATTT
1 AACCCTAACCTAATTT
36408054 TACATAATTT
Statistics
Matches: 820, Mismatches: 70, Indels: 224
0.74 0.06 0.20
Matches are distributed among these distances:
23 416 0.51
24 21 0.03
25 3 0.00
27 21 0.03
28 54 0.07
29 277 0.34
31 12 0.01
35 16 0.02
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.32
Consensus pattern (23 bp):
AACCCTAACCTAATTTATTTAAA
Found at i:36407085 original size:75 final size:76
Alignment explanation
Indices: 36407000--36408053 Score: 990
Period size: 75 Copynumber: 13.5 Consensus size: 76
36406990 TTCATACCCT
*
36407000 AACCCTAACCTAATTTAATTAAAAATCTTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTA
1 AACCTTAACCTAATTT-A-T-AAAA-C-TAACCCTAACCTAATTTATTTAAAAACCCTAACCCTA
*
36407065 GCCTAATTGATTTAAA
61 ACCTAATTGATTTAAA
*
36407081 AACCTTAACCTAATTTATTAAAA--AACCCTAACCTAATTTATTTAAAAACCCTAACCCTAGCCT
1 AACCTTAACCTAATTTA-TAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
36407144 AATTGATTTAAA
65 AATTGATTTAAA
*
36407156 AACCTTAACCTAATTTATTAAAA--AACCCTAACCTAATTTATTTAAAAACCCTAACCCTAGCCT
1 AACCTTAACCTAATTTA-TAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
36407219 AATTGATTTAAA
65 AATTGATTTAAA
*
36407231 AACCTTAACCTAATTTATTAAAA--AACCCTAACCTAATTTATTTAAAAACCCTAACCCTAGCCT
1 AACCTTAACCTAATTTA-TAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
36407294 AATTGATTTAAA
65 AATTGATTTAAA
*
36407306 AACCTTAACCTAATTTATTAAAA--AACCCTAACCTAATTTATTTAAAAACCCTAACCCTAGCCT
1 AACCTTAACCTAATTTA-TAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
36407369 AATTGATTTAAA
65 AATTGATTTAAA
36407381 AACCTTAACCTAATTTATTAAAA--AACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
1 AACCTTAACCTAATTTA-TAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
* *
36407444 AATTTAATTAAAA
65 AA-TTGATTTAAA
* * *
36407457 CCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTACCCTAATTTAATTAAAAACCGTAA-
1 ----AACCTTAACCTAATTT-A-T-AAAA--CTAACCCTAACCTAATTTATTTAAAAACCCTAAC
*
36407521 CCTAA--T--TT-AATTAAA
57 CCTAACCTAATTGATTTAAA
* * * *
36407536 AATCC-TAACCTAATTTATTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAATCTTAACCCT
1 AA-CCTTAACCTAATTTA--T-AAAA--CTAACCCTAACCTAATTTATTTAAAAACCCTAACCCT
*
36407600 AACCTAATTTATTTAAA
60 AACCTAATTGATTTAAA
36407617 AACCCTAACCCTAACCTAATTTAATTAAAAATCTTAACCCTAACCTAATTTATTTAAAAACCCTA
1 AA-CCT-----TAACCTAATTT-A-T-AAAA-C-TAACCCTAACCTAATTTATTTAAAAACCCTA
* *
36407682 ACCCTAACCTAATTTAATTAAAAA
55 ACCCTAACCTAA-TTGATT-TAAA
* * * *
36407706 TCTTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCTAATTTAATTAAAAATCTTAAC
1 ----AACCTTAACCTAATTTA--T-AAAA--CTAACCCTAACCTAATTTATTTAAAAACCCTAAC
*
36407771 CCTAACCTAATTTATTTAAA
57 CCTAACCTAATTGATTTAAA
* *
36407791 AACCCTAACCCTAACCTAATTTAATTAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA
1 AA-CCT-----TAACCTAATTT-A-TAAAA--CTAACCCTAACCTAATTTATTTAAAAACCCTAA
* * *
36407856 CCCTACCCTAATTTAATTAAA
56 CCCTAACCTAATTGATTTAAA
* * *
36407877 AACCGTAACCTAATTTAATTAAA--AATCCTAACCTAATTTATTTAAAAACCCTAA-CCTAA--T
1 AACCTTAACCTAATTT-ATAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
36407937 --TT-ATTTAAA
65 AATTGATTTAAA
* *
36407946 AACCCTAACCTAATTTATTTAAA--AACCCTAACCTAATTTATTTAAAAACCCTAA-CCTAA--T
1 AACCTTAACCTAATTTA-TAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCT
36408006 --TT-ATTTAAA
65 AATTGATTTAAA
* *
36408015 AACCCTAACCTAATTTATTTAAA--AACCCTAACCTAATTT
1 AACCTTAACCTAATTTA-TAAAACTAACCCTAACCTAATTT
36408054 TACATAATTT
Statistics
Matches: 886, Mismatches: 44, Indels: 98
0.86 0.04 0.10
Matches are distributed among these distances:
68 1 0.00
69 110 0.12
70 2 0.00
72 1 0.00
74 5 0.01
75 420 0.47
76 15 0.02
78 1 0.00
79 13 0.01
80 36 0.04
81 30 0.03
82 6 0.01
83 1 0.00
85 10 0.01
86 92 0.10
87 128 0.14
88 8 0.01
89 3 0.00
92 2 0.00
93 2 0.00
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.32
Consensus pattern (76 bp):
AACCTTAACCTAATTTATAAAACTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCTA
ATTGATTTAAA
Found at i:36407978 original size:29 final size:28
Alignment explanation
Indices: 36406982--36408047 Score: 904
Period size: 29 Copynumber: 40.8 Consensus size: 28
36406972 ATAAAAATCG
* * *
36406982 TAATTTATTTCATACCCTAACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
* *
36407010 TAATTTAATTAAAAATCTTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
*
36407039 TAATTTATTTAAAAACCCTAACCCTAGCC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
*
36407068 TAATTGATTTAAAAACCT-----TAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407091 TAATTTA-TTAAAAA----ACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
*
36407114 TAATTTATTTAAAAACCCTAACCCTAGCC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
*
36407143 TAATTGATTTAAAAACCT-----TAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407166 TAATTTA-TTAAAAA----ACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
*
36407189 TAATTTATTTAAAAACCCTAACCCTAGCC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
*
36407218 TAATTGATTTAAAAACCT-----TAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407241 TAATTTA-TTAAAAA----ACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
*
36407264 TAATTTATTTAAAAACCCTAACCCTAGCC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
*
36407293 TAATTGATTTAAAAACCT-----TAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407316 TAATTTA-TTAAAAA----ACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
*
36407339 TAATTTATTTAAAAACCCTAACCCTAGCC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
*
36407368 TAATTGATTTAAAAACCT-----TAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407391 TAATTTA-TTAAAAA----ACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407414 TAATTTATTTAAAAACCCTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* * *
36407443 TAATTTAATTAAAACCCTAACCTTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
* *
36407471 TAATTTAATTAAAAACCCTAACCCTACCC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* *
36407500 TAATTTAATT--AAA---AACCGTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
*
36407523 TAATTTAATTAAAAATCCT-A----A-CC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
*
36407546 TAATTTATTTAAAAACCCTAACCTTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* *
36407575 TAATTTAATTAAAAATCTTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
36407604 TAATTTATTTAAAAACCCTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* *
36407633 TAATTTAATTAAAAATCTTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
36407662 TAATTTATTTAAAAACCCTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* *
36407691 TAATTTAATTAAAAATCTTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
36407720 TAATTTATTTAAAAACCCTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* *
36407749 TAATTTAATTAAAAATCTTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
36407778 TAATTTATTTAAAAACCCTAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* * *
36407807 TAATTTAATTAAAACCCTAACCTTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
* *
36407835 TAATTTAATTAAAAACCCTAACCCTACCC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
* *
36407864 TAATTTAATT--AAA---AACCGTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
*
36407887 TAATTTAATTAAAAATCCT-A----A-CC
1 TAATTTATTTAAAAA-CCTAACCCTAACC
36407910 TAATTTATTT--AAA---AACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407933 TAATTTATTT--AAA---AACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407956 TAATTTATTT--AAA---AACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36407979 TAATTTATTT--AAA---AACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36408002 TAATTTATTT--AAA---AACCCTAACC
1 TAATTTATTTAAAAACCTAACCCTAACC
36408025 TAATTTATTTAAAAACCCTAACC
1 TAATTTATTTAAAAA-CCTAACC
36408048 TAATTTTACA
Statistics
Matches: 883, Mismatches: 72, Indels: 165
0.79 0.06 0.15
Matches are distributed among these distances:
18 1 0.00
21 3 0.00
22 36 0.04
23 280 0.32
24 38 0.04
25 9 0.01
27 6 0.01
28 81 0.09
29 429 0.49
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.33
Consensus pattern (28 bp):
TAATTTATTTAAAAACCTAACCCTAACC
Found at i:36412095 original size:27 final size:27
Alignment explanation
Indices: 36412012--36412093 Score: 80
Period size: 31 Copynumber: 3.0 Consensus size: 27
36412002 TTAACTATTT
36412012 TTTA-ATATTTTAAATTTGTAAAGGTTTTAA
1 TTTATATATTTTAAATTT-TAAA--TTTT-A
* *
36412042 TATATATTTTTTAAATTTTAGAA-TTTA
1 TTTATATATTTTAAATTTTA-AATTTTA
36412069 TTTATATATTTT-AATTTTAAATTTT
1 TTTATATATTTTAAATTTTAAATTTT
36412094 TAATTATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
25 2 0.04
26 10 0.22
27 11 0.24
28 3 0.07
30 5 0.11
31 14 0.31
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (27 bp):
TTTATATATTTTAAATTTTAAATTTTA
Found at i:36412100 original size:27 final size:27
Alignment explanation
Indices: 36412016--36412100 Score: 84
Period size: 27 Copynumber: 3.0 Consensus size: 27
36412006 CTATTTTTTA
36412016 ATATTTTAAATTTGTAAAGGTTTTAATATAT
1 ATATTTTAAATTT-TAAA--TTTTAAT-TAT
* *
36412047 ATTTTTTAAATTTTAGAA-TTTATTTAT
1 ATATTTTAAATTTTA-AATTTTAATTAT
36412074 ATATTTT-AATTTTAAATTTTTAATTAT
1 ATATTTTAAATTTTAAA-TTTTAATTAT
36412101 TTTTCCTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
25 2 0.04
26 7 0.15
27 17 0.36
28 5 0.11
30 2 0.04
31 14 0.30
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (27 bp):
ATATTTTAAATTTTAAATTTTAATTAT
Found at i:36412140 original size:18 final size:18
Alignment explanation
Indices: 36412118--36412155 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
36412108 TTTCTTGAAT
36412118 TTTTTATATTTATATAATA
1 TTTTTAT-TTTATATAATA
*
36412137 TTTTTATTTTATATCATA
1 TTTTTATTTTATATAATA
36412155 T
1 T
36412156 ATATTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTATTTTATATAATA
Found at i:36416735 original size:16 final size:16
Alignment explanation
Indices: 36416714--36416756 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
36416704 CCAATATCCA
*
36416714 ATTATCATATTTGCAC
1 ATTATCATATTTACAC
*
36416730 ATTATCACATTTACAC
1 ATTATCATATTTACAC
36416746 ATATAT-ATATT
1 AT-TATCATATT
36416757 CATTTCAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.37, C:0.16, G:0.02, T:0.44
Consensus pattern (16 bp):
ATTATCATATTTACAC
Found at i:36418328 original size:9 final size:9
Alignment explanation
Indices: 36418316--36418372 Score: 51
Period size: 9 Copynumber: 6.2 Consensus size: 9
36418306 AATAAAAAAT
36418316 TTCGGGTAA
1 TTCGGGTAA
*
36418325 TTCGGGTATT
1 TTCGGGTA-A
***
36418335 TTTTTGTAA
1 TTCGGGTAA
*
36418344 TTCGGTTAA
1 TTCGGGTAA
*
36418353 TTCGGGCAA
1 TTCGGGTAA
36418362 TTCGGGTAA
1 TTCGGGTAA
36418371 TT
1 TT
36418373 TTTAACCAAA
Statistics
Matches: 35, Mismatches: 12, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
9 30 0.86
10 5 0.14
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.44
Consensus pattern (9 bp):
TTCGGGTAA
Found at i:36418549 original size:12 final size:12
Alignment explanation
Indices: 36418532--36418556 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36418522 AGTAATTTCG
36418532 GGTCGGTTAACC
1 GGTCGGTTAACC
36418544 GGTCGGTTAACC
1 GGTCGGTTAACC
36418556 G
1 G
36418557 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:36423335 original size:9 final size:9
Alignment explanation
Indices: 36423321--36423356 Score: 72
Period size: 9 Copynumber: 4.0 Consensus size: 9
36423311 TCTAATCATT
36423321 CATTTCAAA
1 CATTTCAAA
36423330 CATTTCAAA
1 CATTTCAAA
36423339 CATTTCAAA
1 CATTTCAAA
36423348 CATTTCAAA
1 CATTTCAAA
36423357 AATCATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (9 bp):
CATTTCAAA
Found at i:36425032 original size:11 final size:11
Alignment explanation
Indices: 36425018--36425166 Score: 76
Period size: 11 Copynumber: 14.5 Consensus size: 11
36425008 ATTTTTTTAA
36425018 TTTTAAAATAT
1 TTTTAAAATAT
36425029 TTTTAAAATAAT
1 TTTTAAAAT-AT
* *
36425041 TTTT-TATTAT
1 TTTTAAAATAT
*
36425051 TTTT----TAA
1 TTTTAAAATAT
36425058 TTTTAAAATAT
1 TTTTAAAATAT
36425069 TTTTAAAATAAT
1 TTTTAAAAT-AT
* *
36425081 TTTT-TATTAT
1 TTTTAAAATAT
*
36425091 TTTT----TAA
1 TTTTAAAATAT
36425098 TTTTAAAATAT
1 TTTTAAAATAT
36425109 TTTTAAAATAAT
1 TTTTAAAAT-AT
* *
36425121 TTTT-TATTAT
1 TTTTAAAATAT
*
36425131 TTTT----TAA
1 TTTTAAAATAT
36425138 TTTTAAAATAT
1 TTTTAAAATAT
36425149 TTTTAAAATACT
1 TTTTAAAATA-T
36425161 TTTTAA
1 TTTTAA
36425167 TTTTTAAAAT
Statistics
Matches: 110, Mismatches: 12, Indels: 31
0.72 0.08 0.20
Matches are distributed among these distances:
7 18 0.16
10 18 0.16
11 49 0.45
12 25 0.23
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:36425043 original size:40 final size:40
Alignment explanation
Indices: 36425010--36425164 Score: 301
Period size: 40 Copynumber: 3.9 Consensus size: 40
36425000 TTTTTTAAAT
36425010 TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTATTA
1 TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTATTA
36425050 TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTATTA
1 TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTATTA
36425090 TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTATTA
1 TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTATTA
*
36425130 TTTTTTAATTTTAAAATATTTTTAAAATACTTTTT
1 TTTTTTAATTTTAAAATATTTTTAAAATAATTTTT
36425165 AATTTTTAAA
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.63
Consensus pattern (40 bp):
TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTATTA
Found at i:36425083 original size:29 final size:29
Alignment explanation
Indices: 36425029--36425184 Score: 89
Period size: 29 Copynumber: 5.6 Consensus size: 29
36425019 TTTAAAATAT
* * *
36425029 TTTTAAAATAATTTTTTATTATTTTTTAA
1 TTTTAAAATAATTTTTAAATAATTTTTAA
*
36425058 TTTTAAAAT-ATTTTTAAAATAATTTTTTA
1 TTTTAAAATAATTTTT-AAATAATTTTTAA
*** *
36425087 TTATT-TTTTAA-TTTT-AA-AA----TAT
1 TT-TTAAAATAATTTTTAAATAATTTTTAA
* * *
36425109 TTTTAAAATAATTTTTTATTATTTTTTAA
1 TTTTAAAATAATTTTTAAATAATTTTTAA
*
36425138 TTTTAAAAT-ATTTTTAAAATACTTTTTAA
1 TTTTAAAATAATTTTT-AAATAATTTTTAA
36425167 TTTTTAAAATAAATTTTT
1 -TTTTAAAAT-AATTTTT
36425185 GATACTTATT
Statistics
Matches: 94, Mismatches: 18, Indels: 27
0.68 0.13 0.19
Matches are distributed among these distances:
21 2 0.02
22 6 0.06
23 4 0.04
24 1 0.01
25 1 0.01
26 2 0.02
27 2 0.02
28 12 0.13
29 46 0.49
30 12 0.13
32 6 0.06
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTAAAATAATTTTTAAATAATTTTTAA
Found at i:36425141 original size:30 final size:30
Alignment explanation
Indices: 36425107--36425196 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
36425097 ATTTTAAAAT
* *
36425107 ATTTTTAAAATAATTTTTTATTATTTTTTA
1 ATTTTTAAAATAATTTTTTAATACTTTTTA
*
36425137 A-TTTTAAAAT-ATTTTTAAAATACTTTTTA
1 ATTTTTAAAATAATTTTT-TAATACTTTTTA
* * *
36425166 ATTTTTAAAATAAATTTTTGATACTTATTA
1 ATTTTTAAAATAATTTTTTAATACTTTTTA
36425196 A
1 A
36425197 AAAAATAGGC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
28 6 0.12
29 19 0.38
30 20 0.40
31 5 0.10
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (30 bp):
ATTTTTAAAATAATTTTTTAATACTTTTTA
Found at i:36425154 original size:17 final size:17
Alignment explanation
Indices: 36424989--36425034 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
36424979 CCGATATAAT
* * *
36424989 AAATATATTTATTTTTT
1 AAATATTTTTAATTTTA
*
36425006 AAATTTTTTTAATTTTA
1 AAATATTTTTAATTTTA
36425023 AAATATTTTTAA
1 AAATATTTTTAA
36425035 AATAATTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
AAATATTTTTAATTTTA
Found at i:36425183 original size:19 final size:19
Alignment explanation
Indices: 36425147--36425183 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36425137 ATTTTAAAAT
**
36425147 ATTTTTAAAATACTTTTTA
1 ATTTTTAAAATAAATTTTA
36425166 ATTTTTAAAATAAATTTT
1 ATTTTTAAAATAAATTTT
36425184 TGATACTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTTAAAATAAATTTTA
Found at i:36426989 original size:16 final size:16
Alignment explanation
Indices: 36426967--36427035 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
36426957 TTTGGTTCGC
36426967 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
36426983 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36426999 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
36427016 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36427032 TGTA
1 TGTA
36427036 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:36427013 original size:33 final size:32
Alignment explanation
Indices: 36426967--36427035 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
36426957 TTTGGTTCGC
36426967 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
36426999 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
36427032 TGTA
1 TGTA
36427036 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:36427100 original size:44 final size:45
Alignment explanation
Indices: 36427016--36427106 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
36427006 GGATTAGAGG
* * *
36427016 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
36427061 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
36427105 TG
1 TG
36427107 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:36427292 original size:18 final size:17
Alignment explanation
Indices: 36427271--36427305 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36427261 TTATTATTAA
*
36427271 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
36427289 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
36427306 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:36427412 original size:18 final size:17
Alignment explanation
Indices: 36427391--36427425 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36427381 TTATTATTAA
*
36427391 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
36427409 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
36427426 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:36427467 original size:120 final size:120
Alignment explanation
Indices: 36427254--36427756 Score: 952
Period size: 120 Copynumber: 4.2 Consensus size: 120
36427244 ATCATATTTA
*
36427254 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
*
36427319 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
36427374 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
*
36427439 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
36427494 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
36427559 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
36427614 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
36427679 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
36427734 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
36427757 AACTTGAAAA
Statistics
Matches: 380, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 380 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:36430818 original size:33 final size:33
Alignment explanation
Indices: 36430779--36430888 Score: 136
Period size: 33 Copynumber: 3.3 Consensus size: 33
36430769 ATTATAAAGC
36430779 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
36430812 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
36430845 AATGT-T-ATTGTCCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
36430878 ATGTATAATTG
1 ATGTATAATTG
36430889 TTGGTTTAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
32 9 0.14
33 49 0.74
34 8 0.12
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:36430895 original size:51 final size:50
Alignment explanation
Indices: 36430835--36430937 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 50
36430825 CTAAAATTAC
36430835 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATG-ATAA
36430886 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
36430936 TT
1 TT
36430938 TTTACGTATA
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
50 7 0.14
51 44 0.86
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (50 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
Found at i:36431111 original size:86 final size:86
Alignment explanation
Indices: 36431004--36431270 Score: 527
Period size: 86 Copynumber: 3.1 Consensus size: 86
36430994 TTCTCTCCAC
36431004 ATAA-AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
36431068 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
36431089 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
36431154 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
36431175 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
36431240 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
36431261 ATAATAATTA
1 ATAATAATTA
36431271 CAATTATATT
Statistics
Matches: 181, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 4 0.02
86 177 0.98
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.40
Consensus pattern (86 bp):
ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
TTAATATTAAAGATAAAAATT
Found at i:36436797 original size:13 final size:13
Alignment explanation
Indices: 36436779--36436803 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36436769 TAATTTATAA
36436779 GTGTGAAAATTTC
1 GTGTGAAAATTTC
36436792 GTGTGAAAATTT
1 GTGTGAAAATTT
36436804 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:36438042 original size:43 final size:43
Alignment explanation
Indices: 36437893--36438051 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
36437883 TATGTGATAT
* * *
36437893 CGTGTAAGACCACATCTGGGACGTTGGCATCGATT-TGTGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-TTATATGA-TTA
* * * * *
36437937 CGTGTAAGACCATGTTTGAGACATTGGCATTG-TATATGGTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTTATATGATTA
* * *
36437979 CGTGTAAGACC-CTGTCTGGGACAATGACATCGTTATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGTTATATGATTA
* *
36438022 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
36438052 TGTATTTTTT
Statistics
Matches: 91, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
42 29 0.32
43 35 0.38
44 27 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGTTATATGATTA
Found at i:36439546 original size:21 final size:22
Alignment explanation
Indices: 36439516--36439557 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
36439506 CCCTTCACAA
*
36439516 TCATAAGTCATACATCATCATC
1 TCATAAGTCAAACATCATCATC
36439538 TCAT-AGTCAAACATCATCAT
1 TCATAAGTCAAACATCATCAT
36439558 AAAGTCCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (22 bp):
TCATAAGTCAAACATCATCATC
Found at i:36441699 original size:42 final size:41
Alignment explanation
Indices: 36441636--36441762 Score: 121
Period size: 42 Copynumber: 3.0 Consensus size: 41
36441626 GTGTTATCAA
*
36441636 ATATCGATGTCACTATCCCAGAGAGGGTCTTACACGAAATC
1 ATATCGATGTCACTATCCCAGACAGGGTCTTACACGAAATC
* *
36441677 ATATACGATGTCGA-TATCCCAGACATGGTCTTACACGTAATC
1 ATAT-CGATGTC-ACTATCCCAGACAGGGTCTTACACGAAATC
* * * * ** *
36441719 TCTAATCGATGCCAATGTCCCAGACATTGTCTTACACGATATC
1 -AT-ATCGATGTCACTATCCCAGACAGGGTCTTACACGAAATC
36441762 A
1 A
36441763 CATCTCGGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
41 4 0.06
42 33 0.46
43 32 0.45
44 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (41 bp):
ATATCGATGTCACTATCCCAGACAGGGTCTTACACGAAATC
Found at i:36443592 original size:28 final size:27
Alignment explanation
Indices: 36443547--36443611 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
36443537 CTGAATATAT
*
36443547 TATGTTATAAAAATATTATAT-TAATTTA
1 TATGTTA-AATAATATTATATAT-ATTTA
36443575 TATGTTAAATAATAATTATATATATTTA
1 TATGTTAAATAAT-ATTATATATATTTA
36443603 TAT-TTAAAT
1 TATGTTAAAT
36443612 TAAATCACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
27 11 0.32
28 22 0.65
29 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (27 bp):
TATGTTAAATAATATTATATATATTTA
Found at i:36444429 original size:49 final size:49
Alignment explanation
Indices: 36444375--36444474 Score: 146
Period size: 49 Copynumber: 2.0 Consensus size: 49
36444365 ACTTTACTAC
* * *
36444375 TTGTCAATTCGTTTTGTCTTATTTTTTATATGAATTATTTCATGTTTAA
1 TTGTCAATTCGTTTCGTCTTATTTTATATATGAATTACTTCATGTTTAA
* * *
36444424 TTGTCATTTGGTTTCGTTTTATTTTATATATGAATTACTTCATGTTTAA
1 TTGTCAATTCGTTTCGTCTTATTTTATATATGAATTACTTCATGTTTAA
36444473 TT
1 TT
36444475 CTCTTCTACT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.22, C:0.08, G:0.11, T:0.59
Consensus pattern (49 bp):
TTGTCAATTCGTTTCGTCTTATTTTATATATGAATTACTTCATGTTTAA
Found at i:36444493 original size:49 final size:49
Alignment explanation
Indices: 36444393--36444493 Score: 116
Period size: 49 Copynumber: 2.1 Consensus size: 49
36444383 TCGTTTTGTC
* * * ** *
36444393 TTATTTTTTATATGAATTATTTCATGTTTAATTGTCATTTGGTTTCGTT
1 TTATTTTATATATGAATTACTTCATGTTTAATTCTCATTTACTTTCATT
36444442 TTATTTTATATATGAATTACTTCATGTTTAATTCTC-TTCTACTTAT-ATT
1 TTATTTTATATATGAATTACTTCATGTTTAATTCTCATT-TACTT-TCATT
36444491 TTA
1 TTA
36444494 ATCCATTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
48 2 0.05
49 41 0.93
50 1 0.02
ACGTcount: A:0.24, C:0.09, G:0.08, T:0.59
Consensus pattern (49 bp):
TTATTTTATATATGAATTACTTCATGTTTAATTCTCATTTACTTTCATT
Found at i:36456838 original size:33 final size:33
Alignment explanation
Indices: 36456791--36456876 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 33
36456781 TCTGTGCCTG
* *
36456791 AGCCCTATTCAGTAATAGTACAGTGTGGACCTT
1 AGCCCAATACAGTAATAGTACAGTGTGGACCTT
* * *
36456824 ATCCCAAT--A-TAGTA--ACAGTGTGGGCCTT
1 AGCCCAATACAGTAATAGTACAGTGTGGACCTT
*
36456852 AGCCTAATACAGTAATAGTACAGTG
1 AGCCCAATACAGTAATAGTACAGTG
36456877 CAATAATGCA
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
28 19 0.46
30 5 0.12
31 5 0.12
33 12 0.29
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (33 bp):
AGCCCAATACAGTAATAGTACAGTGTGGACCTT
Found at i:36457159 original size:27 final size:27
Alignment explanation
Indices: 36457111--36457162 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
36457101 AAGGCCATAT
*
36457111 CAGTCATTTTATCTCCTAGGGGTATAA
1 CAGTCATTTTATCTCATAGGGGTATAA
*
36457138 CAGTCATTTTA-CTCGATGGGGGTAT
1 CAGTCATTTTATCTC-ATAGGGGTAT
36457163 TTCGGTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (27 bp):
CAGTCATTTTATCTCATAGGGGTATAA
Found at i:36464304 original size:16 final size:16
Alignment explanation
Indices: 36464283--36464315 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36464273 CCTCTGAGTC
36464283 CCTCGCAGCACCAAAT
1 CCTCGCAGCACCAAAT
36464299 CCTCGCAGCACCAAAT
1 CCTCGCAGCACCAAAT
36464315 C
1 C
36464316 GCCTAAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.45, G:0.12, T:0.12
Consensus pattern (16 bp):
CCTCGCAGCACCAAAT
Found at i:36464622 original size:26 final size:26
Alignment explanation
Indices: 36464591--36464666 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
36464581 ACTAATATTG
* *
36464591 CAGCAAAGCTGCCAGTAATAGTATCG
1 CAGCAAAGCTGCCAGTAATAATATCA
* * *
36464617 TAGCAAAGATGCCAGTAATAATATTA
1 CAGCAAAGCTGCCAGTAATAATATCA
* *
36464643 CAGCAAAGCTGCCAATAACAATAT
1 CAGCAAAGCTGCCAGTAATAATAT
36464667 ACTTCCTCCA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAATAATATCA
Found at i:36464918 original size:26 final size:27
Alignment explanation
Indices: 36464831--36464917 Score: 138
Period size: 27 Copynumber: 3.2 Consensus size: 27
36464821 GGTATAACAG
* *
36464831 TCATTTTACCCGATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGA
*
36464858 TCATTTTACCCTATAAGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
*
36464885 TCATTTTACCTTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
36464912 TCATTT
1 TCATTT
36464918 ATTGACCTCT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGA
Found at i:36466778 original size:13 final size:13
Alignment explanation
Indices: 36466760--36466785 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36466750 GCATATGAGT
36466760 GGTAAGGAATTTG
1 GGTAAGGAATTTG
36466773 GGTAAGGAATTTG
1 GGTAAGGAATTTG
36466786 CAAAAGAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (13 bp):
GGTAAGGAATTTG
Found at i:36474763 original size:20 final size:20
Alignment explanation
Indices: 36474738--36474777 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36474728 AACACAGAGG
36474738 GAAAGAGGGGAGGAGAAGAA
1 GAAAGAGGGGAGGAGAAGAA
* *
36474758 GAAAGAGTGGAGTAGAAGAA
1 GAAAGAGGGGAGGAGAAGAA
36474778 ACTGACATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.45, T:0.05
Consensus pattern (20 bp):
GAAAGAGGGGAGGAGAAGAA
Found at i:36476856 original size:3 final size:3
Alignment explanation
Indices: 36476848--36476888 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
36476838 TCTAATTTTT
36476848 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
36476889 TCTAAAAGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:36483131 original size:38 final size:38
Alignment explanation
Indices: 36483089--36483164 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
36483079 TTTGAGATAA
* * *
36483089 ATTTCAGTTGGTTTCATAAAAAAAATCTTTTTAAAAAG
1 ATTTCAGTTGATTTCATAAAAAAAACCCTTTTAAAAAG
* *
36483127 ATTTCAGTTGATTTCTTCAAAAAAACCCTTTTAAAAAG
1 ATTTCAGTTGATTTCATAAAAAAAACCCTTTTAAAAAG
36483165 CTTGGTTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (38 bp):
ATTTCAGTTGATTTCATAAAAAAAACCCTTTTAAAAAG
Found at i:36494434 original size:83 final size:83
Alignment explanation
Indices: 36494295--36494590 Score: 592
Period size: 83 Copynumber: 3.6 Consensus size: 83
36494285 TTGTTAATTT
36494295 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTCGGCAGCCCAAAATTGTCC
1 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTCGGCAGCCCAAAATTGTCC
36494360 CACATGCTGACCCAATCA
66 CACATGCTGACCCAATCA
36494378 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTCGGCAGCCCAAAATTGTCC
1 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTCGGCAGCCCAAAATTGTCC
36494443 CACATGCTGACCCAATCA
66 CACATGCTGACCCAATCA
36494461 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTCGGCAGCCCAAAATTGTCC
1 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTCGGCAGCCCAAAATTGTCC
36494526 CACATGCTGACCCAATCA
66 CACATGCTGACCCAATCA
36494544 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTC
1 GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTC
36494591 TTTCAAATTG
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 213 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (83 bp):
GCTTTCTTGGCTGATTATTTTGCTTGCAAAATGGCCCTTGAAGACTCGGCAGCCCAAAATTGTCC
CACATGCTGACCCAATCA
Found at i:36494849 original size:24 final size:25
Alignment explanation
Indices: 36494800--36494849 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
36494790 ACCCTTCTCA
* *
36494800 TCTCTTCACTTCTCTATCATTTTTC
1 TCTCTTCACTTCCCTATCATTGTTC
36494825 TCTCTTCA-TTCCCT-TCCATTGTTC
1 TCTCTTCACTTCCCTAT-CATTGTTC
36494849 T
1 T
36494850 TCACTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 1 0.05
24 13 0.59
25 8 0.36
ACGTcount: A:0.10, C:0.34, G:0.02, T:0.54
Consensus pattern (25 bp):
TCTCTTCACTTCCCTATCATTGTTC
Found at i:36501978 original size:22 final size:19
Alignment explanation
Indices: 36501953--36501994 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
36501943 TGACAATCAT
36501953 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
36501975 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
36501994 T
1 T
36501995 CAACTTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:36502602 original size:3 final size:3
Alignment explanation
Indices: 36502594--36502619 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36502584 CGAGGATCTT
36502594 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
36502620 TCCCACAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:36511946 original size:11 final size:11
Alignment explanation
Indices: 36511898--36511946 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
36511888 AAATTAACAA
36511898 CAAAATAGTAG
1 CAAAATAGTAG
*
36511909 CAACATAGTAG
1 CAAAATAGTAG
*
36511920 TC-AAATGGTAG
1 -CAAAATAGTAG
*
36511931 CAAAATAGTGG
1 CAAAATAGTAG
36511942 CAAAA
1 CAAAA
36511947 GGTGGGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 1 0.03
11 29 0.94
12 1 0.03
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.18
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:36513625 original size:31 final size:31
Alignment explanation
Indices: 36513540--36513626 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
36513530 TTAAATTTGT
* *
36513540 CATCCCGGATTGCCCGGCAACAATGACCTAC
1 CATCCCGGATTGCCCAGCAACGATGACCTAC
* * ***
36513571 CA-CCCTGGATTGCCTAGCGACGATGTTTTAC
1 CATCCC-GGATTGCCCAGCAACGATGACCTAC
*
36513602 CATCCCGGATTGCCCAACAACGATG
1 CATCCCGGATTGCCCAGCAACGATG
36513627 GTCTCTTAGT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
30 3 0.07
31 38 0.86
32 3 0.07
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (31 bp):
CATCCCGGATTGCCCAGCAACGATGACCTAC
Found at i:36515556 original size:33 final size:34
Alignment explanation
Indices: 36515506--36515573 Score: 79
Period size: 33 Copynumber: 2.0 Consensus size: 34
36515496 TTCTAGTATG
36515506 TATATTTTTCAATATTTT-TAAAATTTTAAAAATT
1 TATATTTTTCAATATTTTAT-AAATTTTAAAAATT
* *
36515540 TATA-TTTTC-ATAATTTTATAATTTTTAATAATT
1 TATATTTTTCAAT-ATTTTATAAATTTTAAAAATT
36515573 T
1 T
36515574 TATAATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
32 2 0.07
33 23 0.77
34 5 0.17
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (34 bp):
TATATTTTTCAATATTTTATAAATTTTAAAAATT
Found at i:36515570 original size:18 final size:18
Alignment explanation
Indices: 36515509--36515584 Score: 70
Period size: 18 Copynumber: 4.3 Consensus size: 18
36515499 TAGTATGTAT
*
36515509 ATTTTTCAATATTTTTA-A
1 ATTTTT-AATAATTTTATA
* *
36515527 AATTTTAA-AAATTTAT-
1 ATTTTTAATAATTTTATA
*
36515543 A-TTTTCATAATTTTATA
1 ATTTTTAATAATTTTATA
36515560 ATTTTTAATAATTTTATA
1 ATTTTTAATAATTTTATA
36515578 ATATTTT
1 AT-TTTT
36515585 GAATCAAGAC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
15 5 0.11
16 13 0.28
17 3 0.06
18 22 0.47
19 4 0.09
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTAATAATTTTATA
Found at i:36515578 original size:8 final size:8
Alignment explanation
Indices: 36515521--36515579 Score: 57
Period size: 8 Copynumber: 7.1 Consensus size: 8
36515511 TTTTCAATAT
*
36515521 TTTTAAAA
1 TTTTATAA
*
36515529 TTTTAAAA
1 TTTTATAA
*
36515537 ATTTAT-A
1 TTTTATAA
36515544 TTTTCATAA
1 TTTT-ATAA
36515553 TTTTATAA
1 TTTTATAA
36515561 TTTTTAATAA
1 -TTTT-ATAA
36515571 TTTTATAA
1 TTTTATAA
36515579 T
1 T
36515580 ATTTTGAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
7 4 0.09
8 23 0.52
9 13 0.30
10 4 0.09
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (8 bp):
TTTTATAA
Found at i:36519555 original size:78 final size:78
Alignment explanation
Indices: 36519426--36519581 Score: 312
Period size: 78 Copynumber: 2.0 Consensus size: 78
36519416 TATTTATGTG
36519426 TTAAAAGCATAAAGCATAAGCTAAGCTAGATATCAAAAGAAACATAAACTGAGGTAGCTGAAAGG
1 TTAAAAGCATAAAGCATAAGCTAAGCTAGATATCAAAAGAAACATAAACTGAGGTAGCTGAAAGG
36519491 AGTGACAAGCAGA
66 AGTGACAAGCAGA
36519504 TTAAAAGCATAAAGCATAAGCTAAGCTAGATATCAAAAGAAACATAAACTGAGGTAGCTGAAAGG
1 TTAAAAGCATAAAGCATAAGCTAAGCTAGATATCAAAAGAAACATAAACTGAGGTAGCTGAAAGG
36519569 AGTGACAAGCAGA
66 AGTGACAAGCAGA
36519582 GGCCTTTCTA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.49, C:0.13, G:0.22, T:0.17
Consensus pattern (78 bp):
TTAAAAGCATAAAGCATAAGCTAAGCTAGATATCAAAAGAAACATAAACTGAGGTAGCTGAAAGG
AGTGACAAGCAGA
Found at i:36530396 original size:27 final size:27
Alignment explanation
Indices: 36530366--36530440 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 27
36530356 AATAAACACA
*
36530366 ATTATATTCAATACTTAATTTTTTACT
1 ATTATATTCAATACTTAATTTTTTAAT
36530393 ATTATA-TC-A-AC-TAATTTTTTAAT
1 ATTATATTCAATACTTAATTTTTTAAT
* * *
36530416 A-TAAATTTAATA-TTAAATTTTTAAT
1 ATTATATTCAATACTTAATTTTTTAAT
36530441 TCTTAATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
22 3 0.08
23 13 0.32
24 3 0.08
25 13 0.32
26 2 0.05
27 6 0.15
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTATATTCAATACTTAATTTTTTAAT
Found at i:36532977 original size:28 final size:27
Alignment explanation
Indices: 36532944--36533038 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 27
36532934 ATTGCAAATA
36532944 ACGATAAGCACCGAAGTGCAAAATAATT
1 ACGATAAGCACCGAAGTGCAAAATAA-T
* * *
36532972 ACGATAAGCACCAAAGTTCAAATTTTACA-
1 ACGATAAGCACCGAAGTGCAAA--ATA-AT
* *
36533001 ACAATAAGCACCGAAGTGCGAAATAAT
1 ACGATAAGCACCGAAGTGCAAAATAAT
*
36533028 ATGATAAGCAC
1 ACGATAAGCAC
36533039 GTTAATTTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.02
27 11 0.21
28 20 0.38
29 18 0.34
30 2 0.04
31 1 0.02
ACGTcount: A:0.46, C:0.19, G:0.16, T:0.19
Consensus pattern (27 bp):
ACGATAAGCACCGAAGTGCAAAATAAT
Found at i:36534543 original size:12 final size:12
Alignment explanation
Indices: 36534526--36534550 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36534516 ATTGAAGGTC
36534526 AATCACCAAGTG
1 AATCACCAAGTG
36534538 AATCACCAAGTG
1 AATCACCAAGTG
36534550 A
1 A
36534551 TTAAAAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (12 bp):
AATCACCAAGTG
Found at i:36535006 original size:6 final size:7
Alignment explanation
Indices: 36534985--36535009 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36534975 TTTCATAAAA
36534985 TTTATTT
1 TTTATTT
36534992 TTTATTT
1 TTTATTT
36534999 TTTATTT
1 TTTATTT
36535006 TTTA
1 TTTA
36535010 AAATGGTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Found at i:36535051 original size:46 final size:47
Alignment explanation
Indices: 36534993--36535082 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
36534983 AATTTATTTT
*
36534993 TTATTTTTTA-TTTTTTAAAATGGTGTATTTAATAAAATTGTTAAAA
1 TTATTTTTTATTTTTTTAAAATGATGTATTTAATAAAATTGTTAAAA
36535039 TTATTTTTTATTTTTTTAAAATGATGTATTTAATAAAATTGTTA
1 TTATTTTTTATTTTTTTAAAATGATGTATTTAATAAAATTGTTA
36535083 GGATATCGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
46 10 0.24
47 32 0.76
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.57
Consensus pattern (47 bp):
TTATTTTTTATTTTTTTAAAATGATGTATTTAATAAAATTGTTAAAA
Found at i:36538292 original size:79 final size:80
Alignment explanation
Indices: 36538200--36538360 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 80
36538190 AAAATTTTTT
36538200 TTAAAAAAAATCCATTCATTACTTGATAAAGTTAC-AAAAAAAAATGAAAGAACAAAAACAATTT
1 TTAAAAAAAATCCATTCATTACTTGATAAAGTTACAAAAAAAAAATGAAAGAACAAAAACAATTT
36538264 TAAAAAATTGTATAA
66 TAAAAAATTGTATAA
*
36538279 TTAAAAAAAATCCATTCATTACTTGATAAAGTTACAAAAAAAAAATGAAAGAACAGAAACAATTT
1 TTAAAAAAAATCCATTCATTACTTGATAAAGTTACAAAAAAAAAATGAAAGAACAAAAACAATTT
36538344 TAAAAAATTGTATAA
66 TAAAAAATTGTATAA
36538359 TT
1 TT
36538361 TTGAACCAAT
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
79 35 0.44
80 45 0.56
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.27
Consensus pattern (80 bp):
TTAAAAAAAATCCATTCATTACTTGATAAAGTTACAAAAAAAAAATGAAAGAACAAAAACAATTT
TAAAAAATTGTATAA
Found at i:36538428 original size:26 final size:27
Alignment explanation
Indices: 36538392--36538444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
36538382 TCATTGTCTC
36538392 TCATTTTCAACATTCTAACTT-AAAAG
1 TCATTTTCAACATTCTAACTTGAAAAG
* *
36538418 TCATTTTCAACCTTCTGACTTGAAAAG
1 TCATTTTCAACATTCTAACTTGAAAAG
36538445 ATTGATTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.38
Consensus pattern (27 bp):
TCATTTTCAACATTCTAACTTGAAAAG
Found at i:36545518 original size:10 final size:9
Alignment explanation
Indices: 36545503--36545540 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
36545493 AGTTCAATTA
36545503 AAAAATTGTT
1 AAAAATT-TT
36545513 AAAAA-TTT
1 AAAAATTTT
36545521 AAAAATTTT
1 AAAAATTTT
36545530 AAATAATTTT
1 AAA-AATTTT
36545540 A
1 A
36545541 GTTTAATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 7 0.27
9 7 0.27
10 12 0.46
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (9 bp):
AAAAATTTT
Found at i:36545538 original size:18 final size:18
Alignment explanation
Indices: 36545498--36545538 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
36545488 TAATTAGTTC
*
36545498 AATTAAAAAATTGTTAAA
1 AATTTAAAAATTGTTAAA
36545516 AATTTAAAAATT-TTAAA
1 AATTTAAAAATTGTTAAA
36545533 TAATTT
1 -AATTT
36545539 TAGTTTAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
AATTTAAAAATTGTTAAA
Found at i:36545585 original size:21 final size:21
Alignment explanation
Indices: 36545545--36545585 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36545535 ATTTTAGTTT
*
36545545 AATCAATTTGACCACCAATTC
1 AATCAATTTGACCACAAATTC
* *
36545566 AATCAATTTGATCATAAATT
1 AATCAATTTGACCACAAATT
36545586 TTATCGACTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (21 bp):
AATCAATTTGACCACAAATTC
Found at i:36545845 original size:13 final size:13
Alignment explanation
Indices: 36545829--36545853 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36545819 TTTATTTTTT
36545829 ATATTTTAATTTG
1 ATATTTTAATTTG
36545842 ATATTTTAATTT
1 ATATTTTAATTT
36545854 TTTATACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
ATATTTTAATTTG
Found at i:36546605 original size:55 final size:55
Alignment explanation
Indices: 36546538--36546657 Score: 213
Period size: 55 Copynumber: 2.2 Consensus size: 55
36546528 TTTTTCAATT
*
36546538 ATTTTTATTTTATTTCTTTAAACATTATCCAAATACTTTGTTTTGAATTTTTTAA
1 ATTTTTATTTTATTTCTTTAAACATTATCCAAATACTTTATTTTGAATTTTTTAA
*
36546593 ATTTTTATTTTATTTCTTTAAACATTATCCAAATACTTTATTTTTAATTTTTTAA
1 ATTTTTATTTTATTTCTTTAAACATTATCCAAATACTTTATTTTGAATTTTTTAA
*
36546648 AATTTTATTT
1 ATTTTTATTT
36546658 ATCAAATAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (55 bp):
ATTTTTATTTTATTTCTTTAAACATTATCCAAATACTTTATTTTGAATTTTTTAA
Found at i:36547214 original size:22 final size:22
Alignment explanation
Indices: 36547144--36547214 Score: 74
Period size: 22 Copynumber: 3.1 Consensus size: 22
36547134 TCATTAACTA
36547144 AGTATATATAATTAAATAATAAAT
1 AGTATA-ATAATT-AATAATAAAT
* *
36547168 ACTAT-ATAATTTAATTAA-AATT
1 AGTATAATAA-TTAA-TAATAAAT
36547190 AGTATAATAATTAATAATAAAT
1 AGTATAATAATTAATAATAAAT
36547212 AGT
1 AGT
36547215 TCCATGTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
21 3 0.08
22 23 0.59
23 9 0.23
24 4 0.10
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (22 bp):
AGTATAATAATTAATAATAAAT
Found at i:36553020 original size:37 final size:37
Alignment explanation
Indices: 36552979--36553081 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
36552969 TTTGAGTACT
*
36552979 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAGACAAAGTGATAAGTGGTTACACTTA
*
36553016 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAGACAAAGTGATAAGTGGTTACACTTA
* *
36553053 TCTGATCAAGTGATAAAGTGATAAGTGGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGT
36553082 AGCTTCAGCT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (37 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTTACACTTA
Found at i:36553152 original size:45 final size:46
Alignment explanation
Indices: 36553043--36553166 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
36553033 GTGATAAGTG
* *
36553043 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
36553089 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
36553134 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
36553167 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:36560452 original size:37 final size:37
Alignment explanation
Indices: 36560411--36560586 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
36560401 TTTGAGTACT
36560411 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
36560448 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
36560485 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
36560522 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
36560559 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
36560587 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:36560658 original size:45 final size:46
Alignment explanation
Indices: 36560549--36560672 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
36560539 GTGATAAGTG
* *
36560549 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
36560595 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
36560640 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
36560673 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:36561527 original size:111 final size:111
Alignment explanation
Indices: 36561333--36561554 Score: 426
Period size: 111 Copynumber: 2.0 Consensus size: 111
36561323 ATCACCAAAA
*
36561333 ATAGTGGAAATAGAATTAGAAGTTGAGTGAGATATGAAATTAAAGCTGAAAGAGTCTACTTTCAT
1 ATAGTGGAAATAGAATTAGAAGTTGAGTGAGATATGAAATTAAAGATGAAAGAGTCTACTTTCAT
36561398 ATAAAAGAAGTGGAGTAAGCAAAAGAATTATATACTTTTAGATATT
66 ATAAAAGAAGTGGAGTAAGCAAAAGAATTATATACTTTTAGATATT
*
36561444 ATAGTGGAAATAGAATTAGAAGTTGAGTGAGATATTAAATTAAAGATGAAAGAGTCTACTTTCAT
1 ATAGTGGAAATAGAATTAGAAGTTGAGTGAGATATGAAATTAAAGATGAAAGAGTCTACTTTCAT
36561509 ATAAAAGAAGTGGAGTAAGCAAAAGAATTATATACTTTTAGATATT
66 ATAAAAGAAGTGGAGTAAGCAAAAGAATTATATACTTTTAGATATT
36561555 TGAATTTTAG
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 109 1.00
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (111 bp):
ATAGTGGAAATAGAATTAGAAGTTGAGTGAGATATGAAATTAAAGATGAAAGAGTCTACTTTCAT
ATAAAAGAAGTGGAGTAAGCAAAAGAATTATATACTTTTAGATATT
Found at i:36566606 original size:446 final size:446
Alignment explanation
Indices: 36565773--36566664 Score: 1784
Period size: 446 Copynumber: 2.0 Consensus size: 446
36565763 TTTTGAGGCC
36565773 ATGCCTCAGGGTTTAAAATGATTGCGTCTGTAATTTGATCATTGATTTAAATCTTGTAAATAGCG
1 ATGCCTCAGGGTTTAAAATGATTGCGTCTGTAATTTGATCATTGATTTAAATCTTGTAAATAGCG
36565838 ATCATGTTTACTTAAGGAACCAAAGCTATAAGAATTTAATTTAGATGAATTGAGTCTTAGTCGTA
66 ATCATGTTTACTTAAGGAACCAAAGCTATAAGAATTTAATTTAGATGAATTGAGTCTTAGTCGTA
36565903 CCAAGTTGTTGTGAAAGTTGGGTTGTCTAAGTACACGATAAAGTAAGATAGAAATTTTGTTAAAA
131 CCAAGTTGTTGTGAAAGTTGGGTTGTCTAAGTACACGATAAAGTAAGATAGAAATTTTGTTAAAA
36565968 TATTTGGGTTGTTGTGACATTCAATACCCAGACCTGGCGATCGGGTCGGGTATAAGGTGTTACAG
196 TATTTGGGTTGTTGTGACATTCAATACCCAGACCTGGCGATCGGGTCGGGTATAAGGTGTTACAG
36566033 TACCTATTTCAAAAACTTTCAAACAACCTATTCAATGACCAATCAACTTTCCAAATTTAAGTTAA
261 TACCTATTTCAAAAACTTTCAAACAACCTATTCAATGACCAATCAACTTTCCAAATTTAAGTTAA
36566098 AACATATACATAATCCCACCAAAACATACCAAATCATTCTAATTTCAACACCTATATAATATAAA
326 AACATATACATAATCCCACCAAAACATACCAAATCATTCTAATTTCAACACCTATATAATATAAA
36566163 TTCATTCAACTGTAGCTATTAAACATTAACATAACTGCTCATCAACAAAAACTAGA
391 TTCATTCAACTGTAGCTATTAAACATTAACATAACTGCTCATCAACAAAAACTAGA
36566219 ATGCCTCAGGGTTTAAAATGATTGCGTCTGTAATTTGATCATTGATTTAAATCTTGTAAATAGCG
1 ATGCCTCAGGGTTTAAAATGATTGCGTCTGTAATTTGATCATTGATTTAAATCTTGTAAATAGCG
36566284 ATCATGTTTACTTAAGGAACCAAAGCTATAAGAATTTAATTTAGATGAATTGAGTCTTAGTCGTA
66 ATCATGTTTACTTAAGGAACCAAAGCTATAAGAATTTAATTTAGATGAATTGAGTCTTAGTCGTA
36566349 CCAAGTTGTTGTGAAAGTTGGGTTGTCTAAGTACACGATAAAGTAAGATAGAAATTTTGTTAAAA
131 CCAAGTTGTTGTGAAAGTTGGGTTGTCTAAGTACACGATAAAGTAAGATAGAAATTTTGTTAAAA
36566414 TATTTGGGTTGTTGTGACATTCAATACCCAGACCTGGCGATCGGGTCGGGTATAAGGTGTTACAG
196 TATTTGGGTTGTTGTGACATTCAATACCCAGACCTGGCGATCGGGTCGGGTATAAGGTGTTACAG
36566479 TACCTATTTCAAAAACTTTCAAACAACCTATTCAATGACCAATCAACTTTCCAAATTTAAGTTAA
261 TACCTATTTCAAAAACTTTCAAACAACCTATTCAATGACCAATCAACTTTCCAAATTTAAGTTAA
36566544 AACATATACATAATCCCACCAAAACATACCAAATCATTCTAATTTCAACACCTATATAATATAAA
326 AACATATACATAATCCCACCAAAACATACCAAATCATTCTAATTTCAACACCTATATAATATAAA
36566609 TTCATTCAACTGTAGCTATTAAACATTAACATAACTGCTCATCAACAAAAACTAGA
391 TTCATTCAACTGTAGCTATTAAACATTAACATAACTGCTCATCAACAAAAACTAGA
36566665 CCACATAATA
Statistics
Matches: 446, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
446 446 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (446 bp):
ATGCCTCAGGGTTTAAAATGATTGCGTCTGTAATTTGATCATTGATTTAAATCTTGTAAATAGCG
ATCATGTTTACTTAAGGAACCAAAGCTATAAGAATTTAATTTAGATGAATTGAGTCTTAGTCGTA
CCAAGTTGTTGTGAAAGTTGGGTTGTCTAAGTACACGATAAAGTAAGATAGAAATTTTGTTAAAA
TATTTGGGTTGTTGTGACATTCAATACCCAGACCTGGCGATCGGGTCGGGTATAAGGTGTTACAG
TACCTATTTCAAAAACTTTCAAACAACCTATTCAATGACCAATCAACTTTCCAAATTTAAGTTAA
AACATATACATAATCCCACCAAAACATACCAAATCATTCTAATTTCAACACCTATATAATATAAA
TTCATTCAACTGTAGCTATTAAACATTAACATAACTGCTCATCAACAAAAACTAGA
Found at i:36569675 original size:12 final size:12
Alignment explanation
Indices: 36569658--36569688 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
36569648 TTTTATATTT
36569658 TTTTTAAATTCA
1 TTTTTAAATTCA
36569670 TTTTTAAATTCA
1 TTTTTAAATTCA
36569682 TGTTTTA
1 T-TTTTA
36569689 TAAATTGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.61
Consensus pattern (12 bp):
TTTTTAAATTCA
Found at i:36575996 original size:42 final size:45
Alignment explanation
Indices: 36575941--36576280 Score: 186
Period size: 44 Copynumber: 7.6 Consensus size: 45
36575931 TAAAGCTAAT
* * *
36575941 AGTCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTGAAG-T-G-A
1 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAA
*
36575983 AGTCTTATCTCTCTGAAGTTGCCGTGGAGCAGACTGAAGATAGAA
1 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAA
* * * * * * *
36576028 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTATA-AA
1 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAG--ATAGAA
* * * * * *
36576074 TTACTGATCTTATCTCTTTGAAGTTACAGTAGAGCAGA-TCATGA-CG-A
1 --A--G-TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAA
* * * *
36576121 A-TCTAATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-A-ACCAA
1 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATA-GAA
* * * * * * * *
36576163 TAATCTTATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAGTTA-CA
1 -AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAA
* * * *
36576208 AGCCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGA
1 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAG-AA
36576254 A-TCTTATCTC-CATGAAGTTGCAGTGGA
1 AGTCTTATCTCTC-TGAAGTTGCAGTGGA
36576281 ACAAATTGAA
Statistics
Matches: 229, Mismatches: 48, Indels: 39
0.72 0.15 0.12
Matches are distributed among these distances:
40 1 0.00
41 28 0.12
42 36 0.16
43 2 0.01
44 65 0.28
45 59 0.26
46 4 0.02
47 5 0.02
48 2 0.01
50 3 0.01
51 24 0.10
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (45 bp):
AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAA
Found at i:36576289 original size:89 final size:87
Alignment explanation
Indices: 36576126--36576297 Score: 202
Period size: 89 Copynumber: 1.9 Consensus size: 87
36576116 GACGAATCTA
* * * *
36576126 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAATAATCTTATCTCCCTAAAGTTGTAGTGG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAACC-AGAATCTTATCTCCATAAAGTTGCAGTGG
** * *
36576191 AGTAGATTGAAGTTACAAGCCTT
65 AACAAATTGAAGCTACAAGCCTT
* * *
36576214 ATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGC-GAATCTTATCTCCATGAAGTTGCAGT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAA-A-ACCAGAATCTTATCTCCATAAAGTTGCAGT
36576278 GGAACAAATTGAAGCTACAA
63 GGAACAAATTGAAGCTACAA
36576298 ATCCTTGCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
88 26 0.37
89 41 0.59
90 1 0.01
91 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (87 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAACCAGAATCTTATCTCCATAAAGTTGCAGTGGA
ACAAATTGAAGCTACAAGCCTT
Found at i:36576368 original size:45 final size:45
Alignment explanation
Indices: 36576319--36576457 Score: 117
Period size: 45 Copynumber: 3.1 Consensus size: 45
36576309 CCTGAGTTTA
*
36576319 CAGCGGAACAGACTGAAGATAACAGATCTTGGCTTCCTATATTGG
1 CAGCGGAACAGACTGAAGATAACAGATCTTGTCTTCCTATATTGG
* * * * *
36576364 CAGC-GAAGCAGA-TCAAAGACACCAG-CCTTGTCTCCCTGAGT-TT-G
1 CAGCGGAA-CAGACT-GAAGATAACAGATCTTGTCTTCCT-A-TATTGG
* * * *
36576408 CAGCAGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGG
1 CAGCGGAACAGACTGAAGATAACAGATCTTGTCTTCCTATATTGG
36576453 CAGCG
1 CAGCG
36576458 AAGCTGATCA
Statistics
Matches: 71, Mismatches: 14, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
43 1 0.01
44 32 0.45
45 37 0.52
46 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (45 bp):
CAGCGGAACAGACTGAAGATAACAGATCTTGTCTTCCTATATTGG
Found at i:36576619 original size:89 final size:89
Alignment explanation
Indices: 36576300--36576588 Score: 418
Period size: 89 Copynumber: 3.2 Consensus size: 89
36576290 AGCTACAAAT
* * * * * *
36576300 CCTTGCCTCCCTGAGTTTACAGCGGAACAGACTGAAGATAACAGATCTTGGCTTCCTATATTGGC
1 CCTTGCCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGC
*
36576365 AGCGAAGCAGATCAAAGACACCAG
66 AGCGAAGCAGATCAAAGACACTAG
*
36576389 CCTTGTCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGC
1 CCTTGCCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGC
*
36576454 AGCGAAGCTGATCAAAGACACTAG
66 AGCGAAGCAGATCAAAGACACTAG
* * * *
36576478 CCTTGCCTCCCTGAGTTTGCAGCAGAGCAAACTGAAAACAGCAGATCTTGTCTTCCTGTACTGGC
1 CCTTGCCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGC
*
36576543 AGTGAAGCAGATCGAAA-ACACTAG
66 AGCGAAGCAGATC-AAAGACACTAG
* *
36576567 TCTTGCCTCTCTGAGTTTGCAG
1 CCTTGCCTCCCTGAGTTTGCAG
36576589 TGGAGTAGGT
Statistics
Matches: 181, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
89 178 0.98
90 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (89 bp):
CCTTGCCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGC
AGCGAAGCAGATCAAAGACACTAG
Found at i:36576745 original size:132 final size:132
Alignment explanation
Indices: 36576585--36576998 Score: 616
Period size: 131 Copynumber: 3.1 Consensus size: 132
36576575 CTCTGAGTTT
*
36576585 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGAAGTAGTGGAGCAGATCAAAGAC
1 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* *
36576650 AGCGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAG
66 GGCGAATCTTATCTTTCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAG
36576715 CA
131 CA
* * *
36576717 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* * *
36576782 GGCGAATCTTATCTTCCCGAGATAGTA-GGAAGCAGATTTTAGCCACCAGTCCTATCTCCCTGAG
66 GGCGAATCTTATCTTTCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAG
36576846 CA
131 CA
* * * * *
36576848 GTAGTGGAGTAGGTTGAAGATTATATATCTTGTCTCCCTAAGCAGCAGTGGAGCAGATCAAAGAC
1 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* * *
36576913 GGTGAGTCTTATCTTTCCGAGGTAGTAGGGAAGCAGATTTAAGCAACCAG-CCTTATCTCCCTGA
66 GGCGAATCTTATCTTTCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCC-TATCTCCCTG-
**
36576977 AGTT
129 AGCA
*
36576981 GCAGTGGAATAGGTTGAA
1 GCAGTGGAGTAGGTTGAA
36576999 ATTACCAATT
Statistics
Matches: 252, Mismatches: 27, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
131 120 0.48
132 114 0.45
133 18 0.07
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (132 bp):
GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
GGCGAATCTTATCTTTCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAG
CA
Found at i:36576795 original size:44 final size:44
Alignment explanation
Indices: 36576700--36576783 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
36576690 AAGCCACCAG
* * * * * *
36576700 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGA
1 TCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGGAGA
*
36576744 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
1 TCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGG
36576784 CGAATCTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGGAGA
Found at i:36577479 original size:22 final size:22
Alignment explanation
Indices: 36577421--36577476 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
36577411 TCTTCAAGGG
36577421 TATGCAATCTT---AGATATGA
1 TATGCAATCTTAGAAGATATGA
36577440 TATGCAATCTTAGAAGATATGA
1 TATGCAATCTTAGAAGATATGA
* *
36577462 TTTTGTAATCTTAGA
1 -TATGCAATCTTAGA
36577477 GATTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 11 0.35
22 8 0.26
23 12 0.39
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
TATGCAATCTTAGAAGATATGA
Found at i:36578738 original size:22 final size:21
Alignment explanation
Indices: 36578696--36578770 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 21
36578686 AAACTAATAC
**
36578696 TCTCTCAATTATTTTCTCAATT
1 TCTCTCAATT-TCCTCTCAATT
*
36578718 TCCTCTCAATTTGCTCTCAATT
1 T-CTCTCAATTTCCTCTCAATT
*
36578740 TGCTCTCAATTTCCTTTCAAATT
1 T-CTCTCAATTTCCTCTC-AATT
36578763 TCTCTCAA
1 TCTCTCAA
36578771 ATCCATATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
22 32 0.70
23 14 0.30
ACGTcount: A:0.21, C:0.28, G:0.03, T:0.48
Consensus pattern (21 bp):
TCTCTCAATTTCCTCTCAATT
Found at i:36578772 original size:11 final size:11
Alignment explanation
Indices: 36578710--36578770 Score: 79
Period size: 11 Copynumber: 5.5 Consensus size: 11
36578700 TCAATTATTT
36578710 TCTCAATTTCC
1 TCTCAATTTCC
*
36578721 TCTCAATTTGC
1 TCTCAATTTCC
*
36578732 TCTCAATTTGC
1 TCTCAATTTCC
36578743 TCTCAATTTCC
1 TCTCAATTTCC
*
36578754 TTTCAAATTT-C
1 TCTC-AATTTCC
36578765 TCTCAA
1 TCTCAA
36578771 ATCCATATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
10 2 0.04
11 38 0.84
12 5 0.11
ACGTcount: A:0.21, C:0.30, G:0.03, T:0.46
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:36580670 original size:18 final size:18
Alignment explanation
Indices: 36580639--36580681 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
36580629 TGCCAGGTGC
** *
36580639 GTATCCTAGTCCTTTTAT
1 GTATCCTAACCCTTATAT
36580657 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
36580675 GTTTCCT
1 GTATCCT
36580682 TTTTCGAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:36581271 original size:21 final size:21
Alignment explanation
Indices: 36581228--36582036 Score: 604
Period size: 21 Copynumber: 37.4 Consensus size: 21
36581218 TCTTAACCCT
36581228 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581249 AACACTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
36581271 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581292 AACACTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
36581314 AACCCTAA-CCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
36581334 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
** *
36581355 AACCCTAAACTAATTTA-TTAAA
1 AACCCT-AAC-CCTTAACTTAAA
*** *** *
36581377 AATTTATAAATTTATAATTTATAA
1 AA-CCCTAACCCT-TAACTTA-AA
*** ** *
36581401 TTAAATTTATA-ATTTAA-TTGACA
1 --AACCCTA-ACCCTTAACTT-AAA
* **
36581424 AACCCTAACAAAAACCCTAACAAAAA
1 AACCCTAAC-----CCTTAACTTAAA
*
36581450 CCCTAACCTTAACCCTTAACTTAAA
1 ----AACCCTAACCCTTAACTTAAA
36581475 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
36581497 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
*
36581519 AACCCTAACCCTTAACGTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581540 AACCCTAAACCCTTAACATAAA
1 AACCCT-AACCCTTAACTTAAA
*
36581562 AACCATAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
*
36581584 AACCCTAACCATTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
36581605 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* *
36581626 AACCCTAACTCGTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581647 AATCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* *
36581668 AACCTTAA-ACTAATATA-TTAAA
1 AACCCTAACCCT--TA-ACTTAAA
*** *** *
36581690 AATTTATAAATTTATAATTTATAATTA
1 AA-CCCTAACCCT-TAA-CT-TAA--A
** * *
36581717 AACTTGTAA--TTTAA-TTGACA
1 AAC-CCTAACCCTTAACTT-AAA
*** *
36581737 AACCCTAA-CAAAAACCCT---
1 AACCCTAACCCTTAA-CTTAAA
*
36581755 AACTCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
36581776 AACCCTAAACCCTTAACTT-AA
1 AACCCT-AACCCTTAACTTAAA
** *
36581797 AACCCTAAACATTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
36581819 AACCATAATCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581840 AACCCTAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
36581862 AATCCTAACCTTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
36581883 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581904 AACCCTAACCATTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
36581925 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581946 AACCCTAACCATTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36581967 AACCCTAACCCATAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* **
36581988 AACTCTAACAATTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36582009 AACCCTAACTCTTAACTT-AA
1 AACCCTAACCCTTAACTTAAA
36582029 AACCCTAA
1 AACCCTAA
36582037 AACCCTACCC
Statistics
Matches: 645, Mismatches: 95, Indels: 97
0.77 0.11 0.12
Matches are distributed among these distances:
18 9 0.01
19 6 0.01
20 39 0.06
21 335 0.52
22 186 0.29
23 17 0.03
24 11 0.02
25 19 0.03
26 8 0.01
27 7 0.01
30 8 0.01
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:36581397 original size:7 final size:7
Alignment explanation
Indices: 36581377--36581416 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
36581367 ATTTATTAAA
36581377 AATTTAT
1 AATTTAT
36581384 AAATTTAT
1 -AATTTAT
36581392 AATTTAT
1 AATTTAT
36581399 AA-TTA-
1 AATTTAT
36581404 AATTTAT
1 AATTTAT
36581411 AATTTA
1 AATTTA
36581417 ATTGACAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 2 0.07
6 6 0.20
7 15 0.50
8 7 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
AATTTAT
Found at i:36581438 original size:12 final size:12
Alignment explanation
Indices: 36581423--36581456 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
36581413 TTTAATTGAC
36581423 AAACCCTAACAA
1 AAACCCTAACAA
36581435 AAACCCTAACAA
1 AAACCCTAACAA
36581447 AAACCCTAAC
1 AAACCCTAAC
36581457 CTTAACCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.56, C:0.35, G:0.00, T:0.09
Consensus pattern (12 bp):
AAACCCTAACAA
Found at i:36582038 original size:28 final size:28
Alignment explanation
Indices: 36582007--36582064 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
36581997 AATTAACTTA
* *
36582007 AAAACCCTAACTCTTAA-CTTAAAACCCT
1 AAAACCCT-ACCCTAAACCTTAAAACCCT
36582035 AAAACCCTACCCTAAACCTTAAAACCCT
1 AAAACCCTACCCTAAACCTTAAAACCCT
36582063 AA
1 AA
36582065 CCCTAAACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (28 bp):
AAAACCCTACCCTAAACCTTAAAACCCT
Found at i:36582072 original size:21 final size:20
Alignment explanation
Indices: 36582028--36582074 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
36582018 TCTTAACTTA
*
36582028 AAACCCTAAAACCCTACCCT
1 AAACCTTAAAACCCTACCCT
36582048 AAACCTTAAAACCCTAACCCT
1 AAACCTTAAAACCCT-ACCCT
36582069 AAACCT
1 AAACCT
36582075 AACCTTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (20 bp):
AAACCTTAAAACCCTACCCT
Found at i:36582118 original size:19 final size:19
Alignment explanation
Indices: 36582094--36582147 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 19
36582084 ATGATATAAT
36582094 TTAATAAATTTACTAACAA
1 TTAATAAATTTACTAACAA
*
36582113 TTAATACAA--T--TAATAA
1 TTAATA-AATTTACTAACAA
*
36582129 TTAATAATTTTACTAACAA
1 TTAATAAATTTACTAACAA
36582148 AATGTTAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 10
0.68 0.08 0.25
Matches are distributed among these distances:
15 1 0.04
16 11 0.41
17 1 0.04
18 1 0.04
19 11 0.41
20 2 0.07
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAATAAATTTACTAACAA
Found at i:36585428 original size:125 final size:124
Alignment explanation
Indices: 36585188--36585621 Score: 589
Period size: 125 Copynumber: 3.5 Consensus size: 124
36585178 CAAACATGCT
* * * *
36585188 ACTGTAGCAAAAGCGCGTCTACGAGGGTGCGATTTCATAAATTCTTCTGATAAAGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
* * *
36585253 GAAGTATTTTTTATATTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCT
66 GAAGCA-TTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
* * * *
36585313 ACTGTAGCAAAAGTGCGTCCATGTGGGTGCGATTTCAGAAATTCTTCTGATAAAGCAACCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
*
36585378 GAAGCATTTTTATACTATTCGCTCAGAAATGTCAACTCGAAATTATTTTTTCAGGACCA
66 GAAGCATTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
* * * * * *
36585437 ACTCTTGCAAAACCGAGTCCACGTGGGCGCGATTTTAGAAATTCTTTTGATAAAGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
* * ** * * *
36585502 GATGCGTTTTTTATACTATTTTCTCAGAAACATCAACTCAAAATAATTTTTTCAGGACCA
66 GAAGC-ATTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
* * * *
36585562 ACTATAGCATAAGTGCGTCCACGTGGGCGCGAGTTCAGAAATTCTTCTGATAAAGCATCC
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCC
36585622 AAAACCCTAA
Statistics
Matches: 271, Mismatches: 37, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
124 109 0.40
125 162 0.60
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
GAAGCATTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
Found at i:36588786 original size:22 final size:22
Alignment explanation
Indices: 36588761--36588802 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
36588751 TATAATAACG
*
36588761 AAATCGTAGTAACACAACAGCC
1 AAATCGTAGTAAAACAACAGCC
*
36588783 AAATGGTAGTAAAACAACAG
1 AAATCGTAGTAAAACAACAG
36588803 TAAAATAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.19, G:0.17, T:0.14
Consensus pattern (22 bp):
AAATCGTAGTAAAACAACAGCC
Found at i:36588808 original size:22 final size:22
Alignment explanation
Indices: 36588761--36588808 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
36588751 TATAATAACG
* *
36588761 AAATCGTAGTAACACAACAGCC
1 AAATCGTAGTAAAACAACAGCA
* *
36588783 AAATGGTAGTAAAACAACAGTA
1 AAATCGTAGTAAAACAACAGCA
36588805 AAAT
1 AAAT
36588809 AACAGCAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.52, C:0.17, G:0.15, T:0.17
Consensus pattern (22 bp):
AAATCGTAGTAAAACAACAGCA
Found at i:36591001 original size:18 final size:19
Alignment explanation
Indices: 36590967--36591007 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
36590957 TCTCAATTCA
*
36590967 TCATTTCATATATCATTTC
1 TCATCTCATATATCATTTC
36590986 TCATCTCATA-ATCATTTC
1 TCATCTCATATATCATTTC
36591004 TCAT
1 TCAT
36591008 AATTTCCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.27, C:0.24, G:0.00, T:0.49
Consensus pattern (19 bp):
TCATCTCATATATCATTTC
Found at i:36591061 original size:43 final size:43
Alignment explanation
Indices: 36590968--36591067 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
36590958 CTCAATTCAT
36590968 CATTTCATATATCATTTCTCATCTCATAATCATTTCTCATAATTTC
1 CATTTCA-ATAT--TTTCTCATCTCATAATCATTTCTCATAATTTC
* * * *
36591014 CATTTTAATATTTTCTCATCTCATATTTATTTCTCAT-ATTTGT
1 CATTTCAATATTTTCTCATCTCATAATCATTTCTCATAATTT-C
36591057 CATTTCAATAT
1 CATTTCAATAT
36591068 CAATCACATA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
42 4 0.08
43 34 0.71
45 4 0.08
46 6 0.12
ACGTcount: A:0.27, C:0.20, G:0.01, T:0.52
Consensus pattern (43 bp):
CATTTCAATATTTTCTCATCTCATAATCATTTCTCATAATTTC
Found at i:36602027 original size:21 final size:21
Alignment explanation
Indices: 36602001--36602041 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36601991 AGACGAGCAA
* *
36602001 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
36602022 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
36602042 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:36603980 original size:16 final size:16
Alignment explanation
Indices: 36603947--36603980 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36603937 GGAGATTGTT
* *
36603947 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
36603963 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
36603979 AA
1 AA
36603981 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:36608463 original size:13 final size:15
Alignment explanation
Indices: 36608436--36608476 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
36608426 TAAGATGGTT
36608436 ATATATAAAATATTA
1 ATATATAAAATATTA
36608451 ATATATAAAATTATTA
1 ATATATAAAA-TATTA
*
36608467 A-ATATTAAAT
1 ATATATAAAAT
36608477 TAAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 1 0.04
15 17 0.71
16 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATATAAAATATTA
Found at i:36614203 original size:46 final size:46
Alignment explanation
Indices: 36614150--36614245 Score: 167
Period size: 46 Copynumber: 2.1 Consensus size: 46
36614140 TTGAATAATC
36614150 AACTAACCACCTTAACAATACAACT-CTCATTGTTTAACATTCACCT
1 AACTAACCACCTTAACAATACAACTGCT-ATTGTTTAACATTCACCT
*
36614196 AACTAACCACCTTAACAATACAATTGCTATTGTTTAACATTCACCT
1 AACTAACCACCTTAACAATACAACTGCTATTGTTTAACATTCACCT
36614242 AACT
1 AACT
36614246 TCTCAACAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 46 0.96
47 2 0.04
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.31
Consensus pattern (46 bp):
AACTAACCACCTTAACAATACAACTGCTATTGTTTAACATTCACCT
Found at i:36617540 original size:42 final size:42
Alignment explanation
Indices: 36617478--36617557 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
36617468 CTGTACAATG
* *
36617478 AGATATTTAATTTTAAGTGAAG-AGAGGTCGGAACTGTCGAAT
1 AGATAATTAATTTTAAGTGAAGAAG-GGTCAGAACTGTCGAAT
**
36617520 AGATAATTAATTTTTGGTGAAGAAGGGTCAGAACTGTC
1 AGATAATTAATTTTAAGTGAAGAAGGGTCAGAACTGTC
36617558 AGACAACATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.31
Consensus pattern (42 bp):
AGATAATTAATTTTAAGTGAAGAAGGGTCAGAACTGTCGAAT
Found at i:36619784 original size:74 final size:74
Alignment explanation
Indices: 36619663--36619800 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 74
36619653 TATGATTTGG
* * *
36619663 TTATTGATTACCATCCGGGTAAGGCTAATGTTGTAGCTGATGTTCTGAGTCGAAAATCTCTGTTT
1 TTATTGATTACCATCCAGGTAAGGCTAATGTTGTAGCTGATGCTCTGAGTCGAAAATCTATGTTT
36619728 GCTTTATGA
66 GCTTTATGA
* * *
36619737 TTATTGATTATCATCCAGGTAAGGCTAATGTTGTTGCTGATGCTCTGAGTTGAAAATCTATGTT
1 TTATTGATTACCATCCAGGTAAGGCTAATGTTGTAGCTGATGCTCTGAGTCGAAAATCTATGTT
36619801 CGTTTTACGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 58 1.00
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (74 bp):
TTATTGATTACCATCCAGGTAAGGCTAATGTTGTAGCTGATGCTCTGAGTCGAAAATCTATGTTT
GCTTTATGA
Found at i:36631374 original size:39 final size:37
Alignment explanation
Indices: 36631307--36631399 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
36631297 ACCAGAATGG
* *
36631307 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
36631346 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
36631383 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
36631400 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:36631594 original size:24 final size:26
Alignment explanation
Indices: 36631543--36631611 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 26
36631533 ACATATATTC
**
36631543 TCAATTCAATCACAATTTCTCACACTT
1 TCAATTCAATCA-TTTTTCTCACACTT
36631570 TCAATTCAATCATTTTTC-CAC-CTT
1 TCAATTCAATCATTTTTCTCACACTT
*
36631594 TCAA-TCAATAATTATTTC
1 TCAATTCAATCATT-TTTC
36631612 ACAAATTCAC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 8 0.21
24 11 0.29
25 3 0.08
26 4 0.11
27 12 0.32
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (26 bp):
TCAATTCAATCATTTTTCTCACACTT
Found at i:36631763 original size:3 final size:3
Alignment explanation
Indices: 36631755--36631790 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
36631745 ATTCCCACTC
36631755 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36631791 CTACTTACCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36632733 original size:14 final size:16
Alignment explanation
Indices: 36632714--36632751 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 16
36632704 ATTTATTTCT
36632714 TAATATAA-AATTT-A
1 TAATATAATAATTTAA
36632728 TAATATAATTAATTTAA
1 TAATATAA-TAATTTAA
36632745 TAATATA
1 TAATATA
36632752 CTTTATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
16 5 0.24
17 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATATAATAATTTAA
Found at i:36632737 original size:31 final size:28
Alignment explanation
Indices: 36632701--36632768 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
36632691 TTGTCCTTAT
**
36632701 TTAATTTATTTCTTAATATAAAATTTATAA
1 TTAATTTATTTAATAATAT--AATTTATAA
* *
36632731 TATAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
36632760 TTAATTTAT
1 TTAATTTAT
36632769 ATATTATATA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 9 0.28
30 1 0.03
31 15 0.47
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Done.