Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 119 of 185
Found at i:36940767 original size:43 final size:43
Alignment explanation
Indices: 36940577--36941425 Score: 155
Period size: 44 Copynumber: 19.3 Consensus size: 43
36940567 GATCTGAAAT
* * *
36940577 CTTCAATCTATTCCACTGCTGCCTAGGAAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * ***
36940620 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATTCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATT-ACTGG
** * * ** * * *
36940665 CTTTGATCTGCTCCACTACTGCTTAGGG-AG-ACAA-GATCTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTA-CTG---G
*
36940709 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * ***
36940752 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATTCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATT-ACTGG
** * * ** * * *
36940797 CTTTGATCTGCTCCACTACTGCTTAGGG-AG-ACAA-GATCTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTA-CTG---G
* *
36940841 CTTCAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * ** ***
36940884 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAAT-TACTGG
** * * ** *
36940929 CTTTGATCTGCTCCACTACTGCTTAGGG-AGATA-AGA-T-CTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAG-TAGA-ATTACTG---G
*
36940973 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * ***
36941016 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATTCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATT-ACTGG
** * * ** * * *
36941061 CTTTGATCTGCTCCACTACTGCTTAGGG-AG-ACAA-GATCTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTA-CTG---G
*
36941105 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * * ***
36941148 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATTCGCCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATT-ACTGG
** * * ** * * *
36941193 CTTTGATCTGCTCCACTACTGCTTAGGGAGGCA-AGA-T-CTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGA-ATTACTG---G
* *
36941237 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * ***
36941280 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATTCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATT-ACTGG
** * * ** * * *
36941325 CTTTGATCTGCTCCACTACTGCTTAGGG-AG-ACAA-GATCTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTA-CTG---G
*
36941369 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
*
36941412 CTTCAATGTACTCC
1 CTTCAATCTACTCC
36941426 GTTGTAACCA
Statistics
Matches: 546, Mismatches: 192, Indels: 136
0.62 0.22 0.16
Matches are distributed among these distances:
40 4 0.01
41 6 0.01
42 18 0.03
43 126 0.23
44 244 0.45
45 108 0.20
46 36 0.07
47 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
Found at i:36941648 original size:132 final size:132
Alignment explanation
Indices: 36940345--36941627 Score: 2264
Period size: 132 Copynumber: 9.7 Consensus size: 132
36940335 NNNNNNNNNN
* *
36940345 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACTATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
* * * * *
36940410 TACTCCACTACTGCTTAGAGAGATAAGATCTGAAATCTTCAATCTATTCCATTGCTG-CAAGGG-
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36940473 AG
131 AG
* * *
36940475 ATAGAATTACTGGCTTCAATATACTCCACTGTAACCATAAGGAGGTAAAATTCACCATCTTTGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGAT
* *
36940540 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGA
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
36940605 AAG
130 AAG
36940608 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
36940673 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36940738 AG
131 AG
36940740 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
*
36940805 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36940870 AG
131 AG
* *
36940872 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
*
36940937 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36941002 AG
131 AG
36941004 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
36941069 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36941134 AG
131 AG
*
36941136 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
* *
36941201 TGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36941266 AG
131 AG
36941268 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
36941333 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36941398 AG
131 AG
** *
36941400 TAGAATTACTGGCTTCAATGTACTCCGTTGTAACCACAAGGAGGTAAAATTCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
* * * * * *
36941465 TACTCCGCCACTGATGAAGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
36941530 AG
131 AG
* *
36941532 TAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACTATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
*
36941597 TGCTCCACTACTGCTTAGGGAGATAAGATCT
66 TGCTCCACTACTGCTTAGGGAGACAAGATCT
36941628 ATTTTCCTCA
Statistics
Matches: 1099, Mismatches: 51, Indels: 3
0.95 0.04 0.00
Matches are distributed among these distances:
131 113 0.10
132 984 0.90
133 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATC
TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
AG
Found at i:36941900 original size:132 final size:132
Alignment explanation
Indices: 36941763--36942141 Score: 596
Period size: 132 Copynumber: 2.9 Consensus size: 132
36941753 ACCGTAATAT
* * * **
36941763 CAGGGAAATAGGATAATTGGCTTCAATGTACTCCACTGTAACCACAAAGAGGTAAAATCCACCAT
1 CAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
36941828 CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG
36941893 CC
131 CC
* **
36941895 CAGGGAAGTAGAATTATTGGCTTCAATGTACTTCACTGTAACCACAGGGAGGTAAAATCTGCCAT
1 CAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
* * * *
36941960 CTTTGACCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG
36942025 CC
131 CC
* *
36942027 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCAT
1 CAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
* * * *
36942092 ATTTGATCTGTTCCACTACTGCTTGGAGAGACAAGATCTAAAATCTTCAA
66 CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAA
36942142 CCTGCTCCAC
Statistics
Matches: 223, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 223 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (132 bp):
CAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG
CC
Found at i:36943472 original size:15 final size:17
Alignment explanation
Indices: 36943447--36943482 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
36943437 TTCATTTTCC
36943447 TTTTCACTTTC-TCATT
1 TTTTCACTTTCATCATT
36943463 TTTTCA-TTTCATCATT
1 TTTTCACTTTCATCATT
36943479 TTTT
1 TTTT
36943483 AATGACTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTCACTTTCATCATT
Found at i:36947512 original size:14 final size:14
Alignment explanation
Indices: 36947483--36947528 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
36947473 AATTTACAAC
* *
36947483 ATATACGAATAAAT
1 ATATACAAATACAT
*
36947497 ATTTACAAATACAT
1 ATATACAAATACAT
36947511 ATATACAAATACA-
1 ATATACAAATACAT
36947524 ATATA
1 ATATA
36947529 ACAGTAAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 5 0.18
14 23 0.82
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (14 bp):
ATATACAAATACAT
Found at i:36953193 original size:4 final size:4
Alignment explanation
Indices: 36953184--36953241 Score: 98
Period size: 4 Copynumber: 14.5 Consensus size: 4
36953174 ACATTCCCCT
*
36953184 ATAC ATAC ATAC ATAC ATAA ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
36953232 ATAA ATAC AT
1 ATAC ATAC AT
36953242 TAATATATGT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:36957843 original size:38 final size:41
Alignment explanation
Indices: 36957760--36957844 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
36957750 ACATCGGAAC
* *
36957760 AAAGCCTGCTAGGCACGGAGCTTGATATAATACACCGACAT
1 AAAGCCTGCTAGGCACGAAGCCTGATATAATACACCGACAT
* *
36957801 AAAGCTTGCTAGGCACGAAGCCTGA-AT-AT-CACCGGCAT
1 AAAGCCTGCTAGGCACGAAGCCTGATATAATACACCGACAT
36957839 AAAGCC
1 AAAGCC
36957845 CGAATATCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
38 13 0.33
39 2 0.05
40 2 0.05
41 22 0.56
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (41 bp):
AAAGCCTGCTAGGCACGAAGCCTGATATAATACACCGACAT
Found at i:36959710 original size:34 final size:34
Alignment explanation
Indices: 36959672--36959784 Score: 151
Period size: 34 Copynumber: 3.4 Consensus size: 34
36959662 TTTGATATGG
* * *
36959672 TATGACATTCTGATATGATATATGTTTATGAAAA
1 TATGACATTCTGATTTGATATATGTTTCTGGAAA
*
36959706 TATGACATTCTGATTTGGTATA---TTCTGGAAA
1 TATGACATTCTGATTTGATATATGTTTCTGGAAA
*
36959737 TATGACATTCTGATTTGATATATGTTTCTGGTAA
1 TATGACATTCTGATTTGATATATGTTTCTGGAAA
*
36959771 TGTGACATTCTGAT
1 TATGACATTCTGAT
36959785 CTGAGATTCG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
31 28 0.41
34 41 0.59
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (34 bp):
TATGACATTCTGATTTGATATATGTTTCTGGAAA
Found at i:36961775 original size:11 final size:11
Alignment explanation
Indices: 36961759--36961809 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
36961749 GTTTCTTAAT
*
36961759 TAAATTAATTA
1 TAAATTATTTA
36961770 TAAA-T-TTTA
1 TAAATTATTTA
36961779 -AAA--ATTTA
1 TAAATTATTTA
36961787 TAAATTATTTA
1 TAAATTATTTA
36961798 TAAATTATTTA
1 TAAATTATTTA
36961809 T
1 T
36961810 TAAGTCTAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 7 0.20
9 6 0.17
10 1 0.03
11 21 0.60
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TAAATTATTTA
Found at i:36962669 original size:99 final size:97
Alignment explanation
Indices: 36962450--36962739 Score: 433
Period size: 96 Copynumber: 3.0 Consensus size: 97
36962440 AACAACTAGT
* *
36962450 TTTATTTGA-TTTTTCCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTTAAAATTTAT
1 TTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTAT
* *
36962514 AATTAATTTATTCAAGTAA-CTTAAACCCTAA
66 AATTAATTTAATCAAGTAACCCTAAACCCTAA
*
36962545 TTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTGATCTAATTTTTTTTAAAAATTT
1 TTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAA-TTTTTTT-AAAATTT
*
36962610 ATAATTAATTTACTCAAGTAACCCTAAACCCTAA
64 ATAATTAATTTAATCAAGTAACCCTAAACCCTAA
* * * *
36962644 TTTATTTAATTTTTTCCTTAAAAACCATAAACTCTAAACTCTAATCTAA-TTTTTTAAAATTTAT
1 TTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTAT
* *
36962708 AATTAATTTAATTAAGAAACCCTAAACCCTAA
66 AATTAATTTAATCAAGTAACCCTAAACCCTAA
36962740 ACTATTATTT
Statistics
Matches: 178, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
95 9 0.05
96 74 0.42
97 13 0.07
98 27 0.15
99 55 0.31
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.41
Consensus pattern (97 bp):
TTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTAT
AATTAATTTAATCAAGTAACCCTAAACCCTAA
Found at i:36962748 original size:99 final size:97
Alignment explanation
Indices: 36962450--36962783 Score: 410
Period size: 96 Copynumber: 3.4 Consensus size: 97
36962440 AACAACTAGT
* *
36962450 TTTATTTGA-TTTTTCCTTAAAAACCCTAAA-TACTAAACCCCAATCTAATTTTTTTAAAATTTA
1 TTTATTTAATTTTTTCCTTAAAAACCCTAAACT-CTAAACCCTAATCTAATTTTTTTAAAATTTA
*
36962513 TAATTAATTT-ATTCAAGTAA-CTTAAACCCTAA
65 TAATTAATTTAATT-AAGTAACCCTAAACCCTAA
* * *
36962545 TTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTGATCTAATTTTTTTTAAAAATTT
1 TTTATTTAATTTTTTCCTTAAAAACCCTAAACTCTAAACCCTAATCTAA-TTTTTTT-AAAATTT
* *
36962610 ATAATTAATTTACTCAAGTAACCCTAAACCCTAA
64 ATAATTAATTTAATTAAGTAACCCTAAACCCTAA
* *
36962644 TTTATTTAATTTTTTCCTTAAAAACCATAAACTCTAAACTCTAATCTAA-TTTTTTAAAATTTAT
1 TTTATTTAATTTTTTCCTTAAAAACCCTAAACTCTAAACCCTAATCTAATTTTTTTAAAATTTAT
*
36962708 AATTAATTTAATTAAGAAACCCTAAACCCTAAACTATTA
66 AATTAATTTAATTAAGTAACCCTAAA-CC----CTA--A
* *
36962747 TTTATTTAATTTTTTCCTT-AAAACCTTAAAATCTAAA
1 TTTATTTAATTTTTTCCTTAAAAACCCTAAACTCTAAA
36962784 AACTCAAAAA
Statistics
Matches: 210, Mismatches: 16, Indels: 19
0.86 0.07 0.08
Matches are distributed among these distances:
95 9 0.04
96 67 0.32
97 15 0.07
98 24 0.11
99 56 0.27
101 3 0.01
102 16 0.08
103 20 0.10
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.42
Consensus pattern (97 bp):
TTTATTTAATTTTTTCCTTAAAAACCCTAAACTCTAAACCCTAATCTAATTTTTTTAAAATTTAT
AATTAATTTAATTAAGTAACCCTAAACCCTAA
Found at i:36962888 original size:19 final size:19
Alignment explanation
Indices: 36962864--36962901 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36962854 TCCTTTTTCC
* *
36962864 ACGTGGACAGAAGGCGCTT
1 ACGTGGACACAAAGCGCTT
36962883 ACGTGGACACAAAGCGCTT
1 ACGTGGACACAAAGCGCTT
36962902 CTTCAAGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.16
Consensus pattern (19 bp):
ACGTGGACACAAAGCGCTT
Found at i:36962940 original size:40 final size:40
Alignment explanation
Indices: 36962891--36962999 Score: 166
Period size: 40 Copynumber: 2.7 Consensus size: 40
36962881 TTACGTGGAC
36962891 ACAAAGCGCTT-CTTCAAGGAAGCGTTTTCTGTCCACGTGG
1 ACAAAGCGCTTCCTT-AAGGAAGCGTTTTCTGTCCACGTGG
** *
36962931 ACAAAGCGCTTCCTTGGGGAAGCGTTTTTTGTCCACGTGG
1 ACAAAGCGCTTCCTTAAGGAAGCGTTTTCTGTCCACGTGG
*
36962971 ACTAAGCGCTTCCTTAAGGAAGCGTTTTC
1 ACAAAGCGCTTCCTTAAGGAAGCGTTTTC
36963000 CTGGGGACCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 58 0.95
41 3 0.05
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (40 bp):
ACAAAGCGCTTCCTTAAGGAAGCGTTTTCTGTCCACGTGG
Found at i:36964890 original size:34 final size:34
Alignment explanation
Indices: 36964852--36964920 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
36964842 GCTCACAATA
36964852 CACATAGGGTTCACACAACATAGGGCTCACATGT
1 CACATAGGGTTCACACAACATAGGGCTCACATGT
* * * * * *
36964886 CACATGGGGTTCGCATAGCATAGGGTTCGCATGT
1 CACATAGGGTTCACACAACATAGGGCTCACATGT
36964920 C
1 C
36964921 TTATGGGCTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (34 bp):
CACATAGGGTTCACACAACATAGGGCTCACATGT
Found at i:36970062 original size:46 final size:45
Alignment explanation
Indices: 36969995--36970083 Score: 169
Period size: 46 Copynumber: 2.0 Consensus size: 45
36969985 GATTGTGTAC
36969995 AAGCCCAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACCCA
1 AAGCCCAATCTGAACCAGCCCAAACCCAAGA-CCAAAACAGACCCA
36970041 AAGCCCAATCTGAACCAGCCCAAACCCAAGACCAAAACAGACC
1 AAGCCCAATCTGAACCAGCCCAAACCCAAGACCAAAACAGACC
36970084 TAACCCCTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 12 0.28
46 31 0.72
ACGTcount: A:0.44, C:0.40, G:0.11, T:0.04
Consensus pattern (45 bp):
AAGCCCAATCTGAACCAGCCCAAACCCAAGACCAAAACAGACCCA
Found at i:36974402 original size:37 final size:37
Alignment explanation
Indices: 36974352--36974425 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
36974342 GTAGCTGATC
*
36974352 ATCTGCAAACTCTAGCGGTTCAAGCTGATCTATTAAG
1 ATCTGCAAACTCTAGCAGTTCAAGCTGATCTATTAAG
*
36974389 ATCTGCAAACTCTAGCAGTTCAGGCTGATCTATTAAG
1 ATCTGCAAACTCTAGCAGTTCAAGCTGATCTATTAAG
36974426 TTTGAAGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (37 bp):
ATCTGCAAACTCTAGCAGTTCAAGCTGATCTATTAAG
Found at i:36983157 original size:46 final size:45
Alignment explanation
Indices: 36983090--36983387 Score: 189
Period size: 46 Copynumber: 6.8 Consensus size: 45
36983080 ATTATACAGG
*
36983090 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * *
36983136 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGT-A-A
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA-ATTCAGA
* * * * * *
36983180 TCCTAT-TTCCTGGAGATTACAATGGAGCGGATTAAAG------GA
1 TCTTATCTCCCT-GAGATTACAGTGGAACAGATCAAAGAATTCAGA
* * * *
36983219 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATTCAGA
*
36983260 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * ** * *
36983306 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATTCAGA
* * *
36983350 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
36983388 CACTATCTTA
Statistics
Matches: 196, Mismatches: 37, Indels: 41
0.72 0.14 0.15
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 19 0.10
40 4 0.02
41 27 0.14
42 1 0.01
43 5 0.03
44 64 0.33
45 1 0.01
46 71 0.36
47 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
Found at i:36983370 original size:44 final size:43
Alignment explanation
Indices: 36983090--36983453 Score: 175
Period size: 44 Copynumber: 8.5 Consensus size: 43
36983080 ATTATACAGG
* *** * *
36983090 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---GAGA
* * * *
36983136 TCTTATCTCCCTGAGATTACAGCGGAGCAGA-TCAAGGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAG--A
* * * *
36983180 TCCTAT-TTCCTGGAGATTACAATGGAGCGGATT-AA--AG-GA
1 TCTTATCTCCCT-GAGATTACAGTGGAGCAGATTGAAGCAGAGA
* * * * *
36983219 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGA-TCACATCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGCAGAGA
* *** * *
36983260 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---GAGA
*
36983306 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAGAGA
* * **
36983350 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAGAGA
* * *
36983393 TCTTATCCCCCCGA-AGTTACAGTGGAGCGGATT-AA--AG-GA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAGAGA
* *
36983432 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
36983454 CAGAGTAGAT
Statistics
Matches: 246, Mismatches: 51, Indels: 49
0.71 0.15 0.14
Matches are distributed among these distances:
38 2 0.01
39 39 0.16
40 4 0.02
41 28 0.11
42 11 0.04
43 31 0.13
44 63 0.26
45 6 0.02
46 61 0.25
47 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAGA
Found at i:36983396 original size:87 final size:83
Alignment explanation
Indices: 36983260--36983465 Score: 209
Period size: 90 Copynumber: 2.4 Consensus size: 83
36983250 TCACATCAGG
* * * * * * *
36983260 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAA--TCAGATCTTATCCCCCCGAAGTTA
36983325 CAGTGGAGCAGATTGAAGCCAGAGA
64 CAGTGGAGCAGATT-AA---AG-GA
*
36983350 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-CACTATCTTATCCCCCCGAAGTTAC
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAATCA-GATCTTATCCCCCCGAAGTTAC
*
36983413 AGTGGAGCGGATTAAAGGA
65 AGTGGAGCAGATTAAAGGA
* * * *
36983432 TCTTATCTCTCTGAGGTTACAGCAGAGTAGATCG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCG
36983466 CATCAAGTCT
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
82 32 0.31
83 2 0.02
86 4 0.04
87 30 0.29
89 1 0.01
90 33 0.32
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (83 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAATCAGATCTTATCCCCCCGAAGTTACA
GTGGAGCAGATTAAAGGA
Found at i:36983446 original size:82 final size:85
Alignment explanation
Indices: 36983305--36983465 Score: 211
Period size: 82 Copynumber: 1.9 Consensus size: 85
36983295 AGAATTTCAG
* * *
36983305 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTAC
1 ATCTTATCCCCCCGAAGTTACAGTGGAGCAGATTGAA--CAGAGATCTTATCTCCCTGAGATTAC
*
36983370 AGCGGAGCAGATCGAAGACACT
64 AGCAGAGCAGATCGAAGACACT
* * *
36983392 ATCTTATCCCCCCGAAGTTACAGTGGAGCGGATT-AA-AG-GATCTTATCTCTCTGAGGTTACAG
1 ATCTTATCCCCCCGAAGTTACAGTGGAGCAGATTGAACAGAGATCTTATCTCCCTGAGATTACAG
*
36983454 CAGAGTAGATCG
66 CAGAGCAGATCG
36983466 CATCAAGTCT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
82 32 0.48
83 2 0.03
86 2 0.03
87 30 0.45
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (85 bp):
ATCTTATCCCCCCGAAGTTACAGTGGAGCAGATTGAACAGAGATCTTATCTCCCTGAGATTACAG
CAGAGCAGATCGAAGACACT
Found at i:36989414 original size:124 final size:124
Alignment explanation
Indices: 36989194--36989585 Score: 712
Period size: 124 Copynumber: 3.2 Consensus size: 124
36989184 GATAAAATCA
36989194 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
36989259 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCGAGAAAATAGTATAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCGAGAAAATAGTATAAAAAACGCTTC
36989318 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
36989383 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCGAGAAAATAGTATAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCGAGAAAATAGTATAAAAAACGCTTC
* * *
36989442 AAGCAGGATGCTTTATCAAAAGAATTTCTAAAATCACGCCTACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
36989507 AGGTCTTAAAAAAATAATTTCGAGTTGACGTTTCTGAGTAAATAGTATAAAAAATGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTC-GAGAAAATAGTATAAAAAACGCTTC
36989567 AAGCAGGATGCTTTATCAG
1 AAGCAGGATGCTTTATCAG
36989586 GATGCTTCAA
Statistics
Matches: 259, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
124 218 0.84
125 41 0.16
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (124 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCGAGAAAATAGTATAAAAAACGCTTC
Found at i:36989579 original size:14 final size:14
Alignment explanation
Indices: 36989560--36989606 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
36989550 AGTATAAAAA
36989560 ATGCTTCAAGCAGG
1 ATGCTTCAAGCAGG
* *
36989574 ATGCTT-TATCAGG
1 ATGCTTCAAGCAGG
36989587 ATGCTTCAAGCAGG
1 ATGCTTCAAGCAGG
36989601 ATGCTT
1 ATGCTT
36989607 TAAGTTAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 11 0.39
14 17 0.61
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (14 bp):
ATGCTTCAAGCAGG
Found at i:36989588 original size:13 final size:13
Alignment explanation
Indices: 36989568--36989608 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
36989558 AAATGCTTCA
36989568 AGCAGGATGCTTT
1 AGCAGGATGCTTT
* *
36989581 ATCAGGATGCTTCA
1 AGCAGGATGCTT-T
36989595 AGCAGGATGCTTT
1 AGCAGGATGCTTT
36989608 A
1 A
36989609 AGTTAAGGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (13 bp):
AGCAGGATGCTTT
Found at i:36989650 original size:22 final size:21
Alignment explanation
Indices: 36989605--36989689 Score: 152
Period size: 21 Copynumber: 4.0 Consensus size: 21
36989595 AGCAGGATGC
36989605 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
36989626 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
36989648 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
36989669 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
36989690 AGGGTTTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
21 41 0.67
22 20 0.33
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.45
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:36989728 original size:12 final size:12
Alignment explanation
Indices: 36989711--36989735 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36989701 AGGGTTTGTC
36989711 AATTAAATTATA
1 AATTAAATTATA
36989723 AATTAAATTATA
1 AATTAAATTATA
36989735 A
1 A
36989736 TTTATAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATTAAATTATA
Found at i:36990273 original size:18 final size:18
Alignment explanation
Indices: 36990247--36990289 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
36990237 GACTCGAAAA
* * *
36990247 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
36990265 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
36990283 AGGATAC
1 AGGATAC
36990290 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:36990946 original size:7 final size:7
Alignment explanation
Indices: 36990936--36990961 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36990926 TTATATACAT
36990936 AATACTA
1 AATACTA
36990943 AATACTA
1 AATACTA
36990950 AATACTA
1 AATACTA
36990957 AATAC
1 AATAC
36990962 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:36992200 original size:11 final size:11
Alignment explanation
Indices: 36992184--36992214 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
36992174 ATTTGGAAGG
36992184 AAATTGAGAGC
1 AAATTGAGAGC
*
36992195 AAATTGAGAGG
1 AAATTGAGAGC
36992206 AAATTGAGA
1 AAATTGAGA
36992215 AAATAATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.48, C:0.03, G:0.29, T:0.19
Consensus pattern (11 bp):
AAATTGAGAGC
Found at i:36992730 original size:2 final size:2
Alignment explanation
Indices: 36992723--36992751 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36992713 CCTTCCTCGT
36992723 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36992752 GCTCACAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36993050 original size:30 final size:29
Alignment explanation
Indices: 36992986--36993053 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
36992976 TTTGAAATTT
* *
36992986 GAAATTTAATTTTTATATTTTTATTTTCA
1 GAAATTTAATTTTTATATTTTTAATGTCA
36993015 GAAATTTAATTTCTT-TAATTTTTAAATGTCA
1 GAAATTTAATTT-TTAT-ATTTTT-AATGTCA
36993046 -AAATTTAA
1 GAAATTTAA
36993054 ATTTAACTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 13 0.38
30 16 0.47
31 5 0.15
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (29 bp):
GAAATTTAATTTTTATATTTTTAATGTCA
Found at i:36993650 original size:10 final size:9
Alignment explanation
Indices: 36993621--36993662 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
36993611 ACTACTATTC
36993621 TTTTTACTT
1 TTTTTACTT
*
36993630 TTTTTTC-T
1 TTTTTACTT
36993638 TTTTTACTGT
1 TTTTTACT-T
36993648 TTTTTACTAT
1 TTTTTACT-T
36993658 TTTTT
1 TTTTT
36993663 TGTTGCTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
8 7 0.25
9 6 0.21
10 15 0.54
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTACTT
Found at i:36993673 original size:23 final size:23
Alignment explanation
Indices: 36993647--36993692 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
36993637 TTTTTTACTG
* *
36993647 TTTTTTACTATTTTTTTGTTGCT
1 TTTTTTACTACTATTTTGTTGCT
*
36993670 TTTTTTGCTACTATTTTGTTGCT
1 TTTTTTACTACTATTTTGTTGCT
36993693 ATTATTTGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.11, G:0.11, T:0.70
Consensus pattern (23 bp):
TTTTTTACTACTATTTTGTTGCT
Found at i:36994892 original size:20 final size:20
Alignment explanation
Indices: 36994859--36994908 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
36994849 GGTTTGGAGT
**
36994859 TCAGGGTTTGGGGTTCAAGG
1 TCAGGGTTCAGGGTTCAAGG
***
36994879 TCAGGGTTCAGGGTTTGGGG
1 TCAGGGTTCAGGGTTCAAGG
36994899 TCAGGGTTCA
1 TCAGGGTTCA
36994909 ATGTAAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.14, C:0.12, G:0.44, T:0.30
Consensus pattern (20 bp):
TCAGGGTTCAGGGTTCAAGG
Found at i:36994902 original size:13 final size:13
Alignment explanation
Indices: 36994849--36994906 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
36994839 TTGAGTTTGA
*
36994849 GGTTTGGAGTTCAG
1 GGTTTGG-GGTCAG
*
36994863 GGTTTGGGGTTCAA
1 GGTTTGGGG-TCAG
** *
36994877 GGTCAGGGTTCAG
1 GGTTTGGGGTCAG
36994890 GGTTTGGGGTCAG
1 GGTTTGGGGTCAG
36994903 GGTT
1 GGTT
36994907 CAATGTAAAA
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
13 18 0.53
14 16 0.47
ACGTcount: A:0.12, C:0.09, G:0.47, T:0.33
Consensus pattern (13 bp):
GGTTTGGGGTCAG
Found at i:36997592 original size:40 final size:39
Alignment explanation
Indices: 36997532--36997743 Score: 128
Period size: 35 Copynumber: 5.6 Consensus size: 39
36997522 AATCATCGTT
* *
36997532 GGTTCATCCAACTAGAGCTGGGCTCACTATTTATATCATC
1 GGTTTATCCGACTAGAGCTGGGCTCACTATTTATATC-TC
* * *
36997572 GGTTTATCTGACTAGTGCTGGG-TGCA--A-ATAT-TGCT-
1 GGTTTATCCGACTAGAGCTGGGCT-CACTATTTATAT-CTC
* * *
36997607 AGTTTATCCAACTAGAGTTGGGCTCACTATTTATATCGTC
1 GGTTTATCCGACTAGAGCTGGGCTCACTATTTATATC-TC
*
36997647 GGTTTATCCGACTAGTA-CTGGG-TGCA--A---ATATCGTT
1 GGTTTATCCGACTAG-AGCTGGGCT-CACTATTTATATC-TC
* * *
36997682 GGTTTATCCAACCAGAGCTGGGCTCACTAATTAT-TCGTC
1 GGTTTATCCGACTAGAGCTGGGCTCACTATTTATATC-TC
* *
36997721 GGTATATCCGACTAGCGCTGGGC
1 GGTTTATCCGACTAGAGCTGGGC
36997744 GCAACTTCTG
Statistics
Matches: 132, Mismatches: 22, Indels: 37
0.69 0.12 0.19
Matches are distributed among these distances:
34 1 0.01
35 46 0.35
36 4 0.03
37 6 0.05
38 6 0.05
39 27 0.20
40 41 0.31
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (39 bp):
GGTTTATCCGACTAGAGCTGGGCTCACTATTTATATCTC
Found at i:36997776 original size:74 final size:76
Alignment explanation
Indices: 36997483--36997817 Score: 325
Period size: 75 Copynumber: 4.5 Consensus size: 76
36997473 TGCGAATGAG
* * * * *
36997483 TAATTGATATTGTCGGTTCATCCGACTAGCGCTGGGCGC-AATCATC-GTTGGTTCATCCAACTA
1 TAATT-ATATCGTCGGTTTATCCGACTAGCGCTGGGCGCAAAT-ATCTGCTAGTTTATCCAACTA
36997546 GAGCTGGGCTCAC
64 GAGCTGGGCTCAC
* * * * *
36997559 TATTTATATCATCGGTTTATCTGACTAGTGCTGGGTGCAAATAT-TGCTAGTTTATCCAACTAGA
1 TAATTATATCGTCGGTTTATCCGACTAGCGCTGGGCGCAAATATCTGCTAGTTTATCCAACTAGA
*
36997623 GTTGGGCTCAC
66 GCTGGGCTCAC
* ** * * * *
36997634 TATTTATATCGTCGGTTTATCCGACTAGTACTGGGTGCAAATATC-GTTGGTTTATCCAACCAGA
1 TAATTATATCGTCGGTTTATCCGACTAGCGCTGGGCGCAAATATCTGCTAGTTTATCCAACTAGA
36997698 GCTGGGCTCAC
66 GCTGGGCTCAC
* * * ** * *
36997709 TAATTAT-TCGTCGGTATATCCGACTAGCGCTGGGCGCAACT-TCTGCCAGTTTATCTTATTAGT
1 TAATTATATCGTCGGTTTATCCGACTAGCGCTGGGCGCAAATATCTGCTAGTTTATCCAACTAGA
*
36997772 GCTGGGCACAC
66 GCTGGGCTCAC
*
36997783 --A-T-T-T-GTCGGTTTATCCGACTAACGCTGGGCGCAAA
1 TAATTATATCGTCGGTTTATCCGACTAGCGCTGGGCGCAAA
36997818 CTCTTTTGCA
Statistics
Matches: 219, Mismatches: 36, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
69 28 0.13
70 2 0.01
71 1 0.00
72 1 0.00
73 2 0.01
74 50 0.23
75 128 0.58
76 7 0.03
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (76 bp):
TAATTATATCGTCGGTTTATCCGACTAGCGCTGGGCGCAAATATCTGCTAGTTTATCCAACTAGA
GCTGGGCTCAC
Found at i:36998422 original size:31 final size:31
Alignment explanation
Indices: 36998386--36998449 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
36998376 GATGAAAACA
36998386 ACGCAGCAGAGAGCAAACCAATGGGGTTTTT
1 ACGCAGCAGAGAGCAAACCAATGGGGTTTTT
36998417 ACGCAGCAGAGAGCAAACCAATGGGGTTTTT
1 ACGCAGCAGAGAGCAAACCAATGGGGTTTTT
36998448 AC
1 AC
36998450 TTTATTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.19
Consensus pattern (31 bp):
ACGCAGCAGAGAGCAAACCAATGGGGTTTTT
Found at i:37007175 original size:22 final size:22
Alignment explanation
Indices: 37007143--37007190 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
37007133 TAATATTATT
37007143 TTTATTATTTAAAT-ATAAAATA
1 TTTATTATTTAAATCAT-AAATA
* *
37007165 TTTATTTTTTATATCATAAATA
1 TTTATTATTTAAATCATAAATA
37007187 TTTA
1 TTTA
37007191 AAATAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTATTATTTAAATCATAAATA
Found at i:37011392 original size:5 final size:5
Alignment explanation
Indices: 37011384--37011413 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
37011374 TAATATAATC
37011384 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
37011414 TGTAATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:37013330 original size:17 final size:18
Alignment explanation
Indices: 37013304--37013341 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
37013294 TTTTTTATAA
37013304 TTATTAAGGA-TTTTAAG
1 TTATTAAGGAGTTTTAAG
* *
37013321 TTATTTAGGAGTTTTATG
1 TTATTAAGGAGTTTTAAG
37013339 TTA
1 TTA
37013342 ACAAGAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (18 bp):
TTATTAAGGAGTTTTAAG
Found at i:37013770 original size:17 final size:18
Alignment explanation
Indices: 37013750--37013786 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
37013740 ATTATTCTAA
*
37013750 TATTTTATTTA-TTATTT
1 TATTTTAGTTATTTATTT
37013767 TATTTTAGTTATTTATTT
1 TATTTTAGTTATTTATTT
37013785 TA
1 TA
37013787 ATTGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (18 bp):
TATTTTAGTTATTTATTT
Found at i:37013773 original size:13 final size:14
Alignment explanation
Indices: 37013750--37013786 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
37013740 ATTATTCTAA
37013750 TATTTTA-TTTA-T
1 TATTTTATTTTAGT
37013762 TATTTTATTTTAGT
1 TATTTTATTTTAGT
37013776 TA-TTTATTTTA
1 TATTTTATTTTA
37013787 ATTGTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.30
13 13 0.57
14 3 0.13
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TATTTTATTTTAGT
Found at i:37018919 original size:47 final size:46
Alignment explanation
Indices: 37018868--37018958 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
37018858 TTCTGGAAGT
* *
37018868 TTGGCTACAATTATAGTGGCCCGACCGCACATATCTGTTCTAGTAAC
1 TTGGCTACAA-TATAGTGGCCCGACCACACATATCTGATCTAGTAAC
* * ** *
37018915 TTGGCTGCAATATGGTGGCTTGACCACATATATCTGATCTAGTA
1 TTGGCTACAATATAGTGGCCCGACCACACATATCTGATCTAGTA
37018959 GTTTAACTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
46 28 0.76
47 9 0.24
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (46 bp):
TTGGCTACAATATAGTGGCCCGACCACACATATCTGATCTAGTAAC
Found at i:37021592 original size:23 final size:23
Alignment explanation
Indices: 37021564--37021608 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
37021554 TACATATTGT
* *
37021564 ACCAAATAATAATTAAAATTTAC
1 ACCAAAAAATAACTAAAATTTAC
37021587 ACCAAAAAATAACTAAAATTTA
1 ACCAAAAAATAACTAAAATTTA
37021609 TTTATGCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (23 bp):
ACCAAAAAATAACTAAAATTTAC
Found at i:37030554 original size:21 final size:21
Alignment explanation
Indices: 37030528--37030597 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
37030518 TGTAACTCGG
*
37030528 TCACACGGGCGTGTGCCTCTT
1 TCACACGGGTGTGTGCCTCTT
* * *
37030549 TCACACTGGTGTGTGCTTCGT
1 TCACACGGGTGTGTGCCTCTT
* *
37030570 TCATATGGGTGTGTGCCTCTT
1 TCACACGGGTGTGTGCCTCTT
*
37030591 TTACACG
1 TCACACG
37030598 TCCATGTCAA
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.11, C:0.26, G:0.27, T:0.36
Consensus pattern (21 bp):
TCACACGGGTGTGTGCCTCTT
Found at i:37041381 original size:30 final size:32
Alignment explanation
Indices: 37041345--37041406 Score: 101
Period size: 30 Copynumber: 2.0 Consensus size: 32
37041335 ATAAATTATA
*
37041345 AAAAATATTAATTAA-ATTAAAAAA-TGAAAT
1 AAAAATATTAAATAATATTAAAAAAGTGAAAT
37041375 AAAAATATTAAATAATATTAAAAAAGTGAAAT
1 AAAAATATTAAATAATATTAAAAAAGTGAAAT
37041407 TAACCCTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 14 0.48
31 9 0.31
32 6 0.21
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (32 bp):
AAAAATATTAAATAATATTAAAAAAGTGAAAT
Found at i:37043059 original size:31 final size:31
Alignment explanation
Indices: 37043016--37043079 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
37043006 CGATCCTTTT
*
37043016 TGATGAGGTGTGATCGGATCACCTCGAAAAG
1 TGATAAGGTGTGATCGGATCACCTCGAAAAG
37043047 TGATAAGGTGTGATCGGATCACCTCGAAAAG
1 TGATAAGGTGTGATCGGATCACCTCGAAAAG
37043078 TG
1 TG
37043080 GTTGTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (31 bp):
TGATAAGGTGTGATCGGATCACCTCGAAAAG
Found at i:37043604 original size:41 final size:42
Alignment explanation
Indices: 37043549--37043740 Score: 190
Period size: 41 Copynumber: 4.5 Consensus size: 42
37043539 AATATATTTA
* * *
37043549 TTTTTTTAACTTTAAAATATTTTTTACATACTTTTTTT-ATT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
37043590 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA-----TT
** * *
37043637 AATTTTTTTAATTTTAAAATATTTTTTTAAAATTTTTTTTAATT
1 --TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
****
37043681 TTAAAAT-ATTTTAAAATATTTTTAAAATACTTTTTTTAATT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
**
37043722 TTTTTAAAATTTTAAAATA
1 TTTTTTTAATTTTAAAATA
37043741 AAAATGGGCC
Statistics
Matches: 123, Mismatches: 19, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
41 68 0.55
42 15 0.12
44 2 0.02
47 2 0.02
49 36 0.29
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (42 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
Found at i:37043636 original size:10 final size:9
Alignment explanation
Indices: 37043621--37043651 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
37043611 TTTAAAATAC
37043621 TTTTTTTAA
1 TTTTTTTAA
37043630 TTTTTTTAA
1 TTTTTTTAA
37043639 TTTTTTTAA
1 TTTTTTTAA
37043648 TTTT
1 TTTT
37043652 AAAATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:37043653 original size:90 final size:90
Alignment explanation
Indices: 37043548--37043728 Score: 267
Period size: 90 Copynumber: 2.0 Consensus size: 90
37043538 AAATATATTT
* ****
37043548 ATTTTTTTAACTTTAAAATA-TTTTTTACATACTTTTTTT-ATTTTTTTTTAATTTTAAAATATT
1 ATTTTTTTAACTTTAAAATATTTTTTTA-AAACTTTTTTTAATTTTAAAAT-ATTTTAAAATATT
37043611 TTTAAAATACTTTTTTTAATTTTTTTA
64 TTTAAAATACTTTTTTTAATTTTTTTA
* *
37043638 ATTTTTTTAATTTTAAAATATTTTTTTAAAATTTTTTTTAATTTTAAAATATTTTAAAATATTTT
1 ATTTTTTTAACTTTAAAATATTTTTTTAAAACTTTTTTTAATTTTAAAATATTTTAAAATATTTT
37043703 TAAAATACTTTTTTTAATTTTTTTA
66 TAAAATACTTTTTTTAATTTTTTTA
37043728 A
1 A
37043729 AATTTTAAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
90 69 0.84
91 13 0.16
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (90 bp):
ATTTTTTTAACTTTAAAATATTTTTTTAAAACTTTTTTTAATTTTAAAATATTTTAAAATATTTT
TAAAATACTTTTTTTAATTTTTTTA
Found at i:37043660 original size:10 final size:10
Alignment explanation
Indices: 37043647--37043714 Score: 50
Period size: 10 Copynumber: 6.5 Consensus size: 10
37043637 AATTTTTTTA
37043647 ATTTTAAAAT
1 ATTTTAAAAT
37043657 ATTTTTTTAAAAT
1 A---TTTTAAAAT
* **
37043670 TTTTTTTAAT
1 ATTTTAAAAT
37043680 -TT-TAAAAT
1 ATTTTAAAAT
37043688 ATTTTAAAAT
1 ATTTTAAAAT
37043698 ATTTTTAAAAT
1 A-TTTTAAAAT
37043709 ACTTTT
1 A-TTTT
37043715 TTTAATTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
8 4 0.09
9 4 0.09
10 15 0.33
11 14 0.30
13 9 0.20
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:37043732 original size:11 final size:11
Alignment explanation
Indices: 37043599--37043734 Score: 73
Period size: 11 Copynumber: 13.1 Consensus size: 11
37043589 TTTTTTTTAA
*
37043599 TTTTAAAATAT
1 TTTTAAAATTT
37043610 TTTTAAAATACTT
1 TTTTAAAAT--TT
*
37043623 TTTT-TAATTT
1 TTTTAAAATTT
37043633 TTTT--AATTT
1 TTTTAAAATTT
37043642 TTTT--AA--T
1 TTTTAAAATTT
*
37043649 TTTAAAATATTT
1 TTTTAAA-ATTT
37043661 TTTTAAAATTT
1 TTTTAAAATTT
*
37043672 TTTT-TAA---
1 TTTTAAAATTT
*
37043679 TTTTAAAA-TA
1 TTTTAAAATTT
*
37043689 TTTTAAAATAT
1 TTTTAAAATTT
37043700 TTTTAAAATACTT
1 TTTTAAAAT--TT
*
37043713 TTTT-TAATTT
1 TTTTAAAATTT
37043723 TTTTAAAATTT
1 TTTTAAAATTT
37043734 T
1 T
37043735 AAAATAAAAA
Statistics
Matches: 100, Mismatches: 11, Indels: 28
0.72 0.08 0.20
Matches are distributed among these distances:
7 8 0.08
8 2 0.02
9 12 0.12
10 23 0.23
11 32 0.32
12 13 0.13
13 10 0.10
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:37044889 original size:3 final size:3
Alignment explanation
Indices: 37044875--37044917 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
37044865 CAAATAAAAC
* *
37044875 TAA TAA TGA TAA TAA TTAA TAA TAA TAA TAA TGA TAA TAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
37044918 ATGCTAATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:37044896 original size:16 final size:16
Alignment explanation
Indices: 37044875--37044917 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
37044865 CAAATAAAAC
*
37044875 TAATAATGATAATAAT
1 TAATAATAATAATAAT
37044891 TAATAATAATAATAA-
1 TAATAATAATAATAAT
*
37044906 TGATAATAATAA
1 TAATAATAATAA
37044918 ATGCTAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (16 bp):
TAATAATAATAATAAT
Found at i:37044926 original size:25 final size:25
Alignment explanation
Indices: 37044866--37044919 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
37044856 ATAAAAGGGC
37044866 AAATAA-AACTAATAATGATAATAAT
1 AAATAATAA-TAATAATGATAATAAT
*
37044891 TAATAATAATAATAATGATAATAAT
1 AAATAATAATAATAATGATAATAAT
37044916 AAAT
1 AAAT
37044920 GCTAATACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (25 bp):
AAATAATAATAATAATGATAATAAT
Found at i:37047865 original size:22 final size:22
Alignment explanation
Indices: 37047840--37047994 Score: 211
Period size: 22 Copynumber: 7.0 Consensus size: 22
37047830 CCAACATTCA
37047840 GACAACATTTAATCAACAATTG
1 GACAACATTTAATCAACAATTG
* * * *
37047862 GACAGCATTCAATCAATATTTG
1 GACAACATTTAATCAACAATTG
37047884 GACAACATTTAATCAACAATTG
1 GACAACATTTAATCAACAATTG
* * *
37047906 GACATCATTAAATCAACATTTG
1 GACAACATTTAATCAACAATTG
37047928 GACAACATTTAATCAACAATTG
1 GACAACATTTAATCAACAATTG
* * * *
37047950 GACAGCATTCAATCAATATTTG
1 GACAACATTTAATCAACAATTG
37047972 GACAACATTTAATCAACAATTG
1 GACAACATTTAATCAACAATTG
37047994 G
1 G
37047995 CACTAAACCA
Statistics
Matches: 111, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 111 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (22 bp):
GACAACATTTAATCAACAATTG
Found at i:37047890 original size:44 final size:44
Alignment explanation
Indices: 37047840--37047994 Score: 283
Period size: 44 Copynumber: 3.5 Consensus size: 44
37047830 CCAACATTCA
37047840 GACAACATTTAATCAACAATTGGACAGCATTCAATCAATATTTG
1 GACAACATTTAATCAACAATTGGACAGCATTCAATCAATATTTG
* * *
37047884 GACAACATTTAATCAACAATTGGACATCATTAAATCAACATTTG
1 GACAACATTTAATCAACAATTGGACAGCATTCAATCAATATTTG
37047928 GACAACATTTAATCAACAATTGGACAGCATTCAATCAATATTTG
1 GACAACATTTAATCAACAATTGGACAGCATTCAATCAATATTTG
37047972 GACAACATTTAATCAACAATTGG
1 GACAACATTTAATCAACAATTGG
37047995 CACTAAACCA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 105 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (44 bp):
GACAACATTTAATCAACAATTGGACAGCATTCAATCAATATTTG
Found at i:37048228 original size:43 final size:43
Alignment explanation
Indices: 37048097--37048402 Score: 325
Period size: 43 Copynumber: 7.2 Consensus size: 43
37048087 CGCTATTGAC
* **** *
37048097 AACGCCGCTAAAGGTCATGTTCTTTAGCGGTGC-TACGAAAAA
1 AACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCAACA
* * * * * * *
37048139 AACACCGCTAAAAGTCAGGGTCTTTAGCTGCG-TTTTCCTACA
1 AACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCAACA
*
37048181 AACGCCGCTAAAGGTCATGTTCTCTAGCGGCGCTTTTTCAACA
1 AACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCAACA
** *
37048224 AACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCAACA
** * *
37048267 AACGCCGCTAAAGAACATGTTCCTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCAACA
* *
37048310 AACGCCGCTAAAGATCATGTTCTTTAGCGGCG-TTTCTTCCACA
1 AACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTT-TTCAACA
* *
37048353 AACGCCACTAAAGGTCATGTTCTTTTAGCGGC-ATTTTT-ACACA
1 AACGCCGCTAAAGGTCATGTTC-TTTAGCGGCGCTTTTTCA-ACA
37048396 AACGCCG
1 AACGCCG
37048403 TTATTTCTTT
Statistics
Matches: 227, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
42 58 0.26
43 157 0.69
44 12 0.05
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (43 bp):
AACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCAACA
Found at i:37048864 original size:21 final size:21
Alignment explanation
Indices: 37048840--37048890 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
37048830 TTCTTTTGAA
* *
37048840 CCTCTGCTTCTCTTGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
*
37048861 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
*
37048882 CCTATGCTT
1 CCTCTGCTT
37048891 TAAGTTGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.04, C:0.43, G:0.18, T:0.35
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:37048891 original size:87 final size:87
Alignment explanation
Indices: 37048754--37049017 Score: 431
Period size: 87 Copynumber: 3.0 Consensus size: 87
37048744 TTCTACTCTA
* * * * * * * *
37048754 CTCTGCTT-TCTTCGCCGCAGCGTCTACTTCTCTCGATGCCACATCTGCTTTAAGTTGTAGCTGG
1 CTCTGCTTCTCTT-GCTGCAGCCTCTGCTTCCCTCGCTGCCGCCTATGCTTTAAGTTGTAGCTGG
37048818 AGTTCTTCATATTTCTTTTGAAC
65 AGTTCTTCATATTTCTTTTGAAC
37048841 CTCTGCTTCTCTTGCTGCAGCCTCTGCTTCCCTCGCTGCCGCCTATGCTTTAAGTTGTAGCTGGA
1 CTCTGCTTCTCTTGCTGCAGCCTCTGCTTCCCTCGCTGCCGCCTATGCTTTAAGTTGTAGCTGGA
37048906 GTTCTTCATATTTCTTTTGAAC
66 GTTCTTCATATTTCTTTTGAAC
37048928 CTCTGCTTCTCTTGCTGCAGCCTCTGCTTCCCTCGCTGCCGCCTATGCTTTAAGTTGTAGCTGGA
1 CTCTGCTTCTCTTGCTGCAGCCTCTGCTTCCCTCGCTGCCGCCTATGCTTTAAGTTGTAGCTGGA
*
37048993 GTTCTTCATATTTCCTTTGAAC
66 GTTCTTCATATTTCTTTTGAAC
37049015 CTC
1 CTC
37049018 AACTGTGGTC
Statistics
Matches: 167, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
87 163 0.98
88 4 0.02
ACGTcount: A:0.12, C:0.30, G:0.18, T:0.40
Consensus pattern (87 bp):
CTCTGCTTCTCTTGCTGCAGCCTCTGCTTCCCTCGCTGCCGCCTATGCTTTAAGTTGTAGCTGGA
GTTCTTCATATTTCTTTTGAAC
Found at i:37048951 original size:21 final size:21
Alignment explanation
Indices: 37048927--37048977 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
37048917 TTCTTTTGAA
* *
37048927 CCTCTGCTTCTCTTGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
*
37048948 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
*
37048969 CCTATGCTT
1 CCTCTGCTT
37048978 TAAGTTGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.04, C:0.43, G:0.18, T:0.35
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:37054457 original size:9 final size:9
Alignment explanation
Indices: 37054443--37054643 Score: 140
Period size: 9 Copynumber: 23.4 Consensus size: 9
37054433 CATCATATAT
37054443 TTATGTAAG
1 TTATGTAAG
37054452 TTATGTAAG
1 TTATGTAAG
37054461 TTATGT-A-
1 TTATGTAAG
* *
37054468 TTAAGTAAA
1 TTATGTAAG
37054477 TTATGTAAG
1 TTATGTAAG
37054486 TTATGT-A-
1 TTATGTAAG
37054493 TTATGTAAG
1 TTATGTAAG
*
37054502 TTATGTAAA
1 TTATGTAAG
*
37054511 TTGTGT-A-
1 TTATGTAAG
37054518 TTATGTAAG
1 TTATGTAAG
37054527 TTATGT-A-
1 TTATGTAAG
* *
37054534 TTAAGTAGG
1 TTATGTAAG
37054543 TTATGTAAG
1 TTATGTAAG
*
37054552 TTATAT-A-
1 TTATGTAAG
37054559 TTATGTAAG
1 TTATGTAAG
37054568 TTATGTAAG
1 TTATGTAAG
* ***
37054577 TTTTTGTTTT
1 -TTATGTAAG
*
37054587 TTGTGT-A-
1 TTATGTAAG
*
37054594 TTATGTAAC
1 TTATGTAAG
* *
37054603 TTATTTAAT
1 TTATGTAAG
*
37054612 TTATGTAGG
1 TTATGTAAG
37054621 TTATGTATTA-
1 TTATGTA--AG
37054631 TTATGTAAG
1 TTATGTAAG
37054640 TTAT
1 TTAT
37054644 TATGTAGGTT
Statistics
Matches: 151, Mismatches: 25, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
7 31 0.21
8 11 0.07
9 97 0.64
10 12 0.08
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (9 bp):
TTATGTAAG
Found at i:37054480 original size:16 final size:16
Alignment explanation
Indices: 37054452--37054536 Score: 84
Period size: 16 Copynumber: 5.2 Consensus size: 16
37054442 TTTATGTAAG
*
37054452 TTATGTAAGTTATGTA
1 TTATGTAAATTATGTA
*
37054468 TTAAGTAAATTATGTAA
1 TTATGTAAATTATGT-A
37054485 GTTATGT--ATTATGTAA
1 -TTATGTAAATTATGT-A
*
37054501 GTTATGTAAATTGTGTA
1 -TTATGTAAATTATGTA
*
37054518 TTATGTAAGTTATGTA
1 TTATGTAAATTATGTA
37054534 TTA
1 TTA
37054537 AGTAGGTTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
16 46 0.78
17 2 0.03
18 11 0.19
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (16 bp):
TTATGTAAATTATGTA
Found at i:37054480 original size:25 final size:25
Alignment explanation
Indices: 37054443--37054664 Score: 161
Period size: 25 Copynumber: 8.8 Consensus size: 25
37054433 CATCATATAT
37054443 TTATGTAAGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
37054468 TTAAGTAAATTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
37054493 TTATGTAAGTTATGTAAATTGTGTA
1 TTATGTAAGTTATGTAAGTTATGTA
*
37054518 TTATGTAAGTTATGT-A-TTAAGTA
1 TTATGTAAGTTATGTAAGTTATGTA
*
37054541 GGTTATGTAAGTTATAT-A-TTATGTAA
1 --TTATGTAAGTTATGTAAGTTATGT-A
* *** *
37054567 GTTATGTAAGTTTTTGTTTTTTGTGTA
1 -TTATGTAAG-TTATGTAAGTTATGTA
* * *
37054594 TTATGTAACTTATTTAATTTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
37054619 GGTTATGTATTA-TTATGTAAGTTAT-TA
1 --TTATGTA--AGTTATGTAAGTTATGTA
* *
37054646 TGTAGGTTA-TTATGTAAGT
1 T-TATGTAAGTTATGTAAGT
37054665 CATTATGTTG
Statistics
Matches: 162, Mismatches: 24, Indels: 23
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.03
24 12 0.07
25 101 0.62
26 17 0.10
27 10 0.06
28 16 0.10
29 1 0.01
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.50
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTATGTA
Found at i:37054502 original size:41 final size:41
Alignment explanation
Indices: 37054443--37054574 Score: 146
Period size: 41 Copynumber: 3.2 Consensus size: 41
37054433 CATCATATAT
*
37054443 TTATGTAAGTTATGTAAGTTATGTATTAAGTAAATTATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTATTAAGTATATTATGTAAG
*
37054486 TTATGTATTATGTAAGTTATGTA--AATTGTGTATTATGTAAG
1 TTATGTATTATGTAAGTTATGTATTAA--GTATATTATGTAAG
* *
37054527 TTATGTATTAAGTAGGTTATGTAAGTT-A-TATATTATGTAAG
1 TTATGTATTATGTAAGTTATGT-A-TTAAGTATATTATGTAAG
37054568 TTATGTA
1 TTATGTA
37054575 AGTTTTTGTT
Statistics
Matches: 78, Mismatches: 5, Indels: 14
0.80 0.05 0.14
Matches are distributed among these distances:
39 2 0.03
41 67 0.86
42 2 0.03
43 6 0.08
44 1 0.01
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (41 bp):
TTATGTATTATGTAAGTTATGTATTAAGTATATTATGTAAG
Found at i:37054545 original size:16 final size:16
Alignment explanation
Indices: 37054456--37054549 Score: 75
Period size: 16 Copynumber: 5.8 Consensus size: 16
37054446 TGTAAGTTAT
37054456 GTAAGTTATGTATTAA
1 GTAAGTTATGTATTAA
* *
37054472 GTAAATTATGTAAGTTAT
1 GTAAGTTATGT-A-TTAA
*
37054490 GT-A-TTATGTAAGTTAT
1 GTAAGTTATGT-A-TTAA
* * *
37054506 GTAAATTGTGTATTAT
1 GTAAGTTATGTATTAA
37054522 GTAAGTTATGTATTAA
1 GTAAGTTATGTATTAA
*
37054538 GTAGGTTATGTA
1 GTAAGTTATGTA
37054550 AGTTATATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
16 53 0.79
17 4 0.06
18 10 0.15
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (16 bp):
GTAAGTTATGTATTAA
Found at i:37054645 original size:12 final size:12
Alignment explanation
Indices: 37054628--37054672 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
37054618 AGGTTATGTA
37054628 TTATTATGTAAG
1 TTATTATGTAAG
*
37054640 TTATTATGTAGG
1 TTATTATGTAAG
37054652 TTATTATGTAAG
1 TTATTATGTAAG
*
37054664 TCATTATGT
1 TTATTATGT
37054673 TGGTTATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (12 bp):
TTATTATGTAAG
Found at i:37054658 original size:24 final size:24
Alignment explanation
Indices: 37054621--37054679 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
37054611 TTTATGTAGG
*
37054621 TTATGTA--TTATTATGTAAGTTA
1 TTATGTAGGTTATTATGTAAGTCA
37054643 TTATGTAGGTTATTATGTAAGTCA
1 TTATGTAGGTTATTATGTAAGTCA
*
37054667 TTATGTTGGTTAT
1 TTATGTAGGTTAT
37054680 GTAAGTTGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 7 0.21
24 26 0.79
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.53
Consensus pattern (24 bp):
TTATGTAGGTTATTATGTAAGTCA
Found at i:37054681 original size:21 final size:22
Alignment explanation
Indices: 37054631--37054685 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 22
37054621 TTATGTATTA
*
37054631 TTATGTAAGTTATTATGTAGGTT
1 TTATGTAAGTCATTATGTAGG-T
*
37054654 ATTATGTAAGTCATTATGTTGG-
1 -TTATGTAAGTCATTATGTAGGT
37054676 TTATGTAAGT
1 TTATGTAAGT
37054686 TGTGATATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 10 0.34
24 19 0.66
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (22 bp):
TTATGTAAGTCATTATGTAGGT
Found at i:37054795 original size:19 final size:18
Alignment explanation
Indices: 37054746--37054798 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
37054736 TCAATTTTTA
37054746 AAAATATATATAAAT-TT
1 AAAATATATATAAATATT
*
37054763 TAAA-ATATAT--ATATT
1 AAAATATATATAAATATT
37054778 AAAACTATATATAAATATT
1 AAAA-TATATATAAATATT
37054797 AA
1 AA
37054799 TAAGTTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 2 0.07
15 5 0.17
16 6 0.21
17 9 0.31
19 7 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATATATATAAATATT
Found at i:37054813 original size:9 final size:9
Alignment explanation
Indices: 37054799--37054863 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
37054789 TAAATATTAA
37054799 TAAGTTATG
1 TAAGTTATG
37054808 TAAGTTATG
1 TAAGTTATG
* *
37054817 TATTA-TAAATT
1 TA--AGT-TATG
*
37054828 TAAATTATG
1 TAAGTTATG
37054837 TAAGTTATG
1 TAAGTTATG
* *
37054846 TAAATTAAG
1 TAAGTTATG
37054855 TAAGTTATG
1 TAAGTTATG
37054864 GAATTTGAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
9 36 0.84
10 2 0.05
11 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:37054851 original size:18 final size:18
Alignment explanation
Indices: 37054828--37054863 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
37054818 ATTATAAATT
*
37054828 TAAATTATGTAAGTTATG
1 TAAATTAAGTAAGTTATG
37054846 TAAATTAAGTAAGTTATG
1 TAAATTAAGTAAGTTATG
37054864 GAATTTGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (18 bp):
TAAATTAAGTAAGTTATG
Found at i:37054894 original size:17 final size:17
Alignment explanation
Indices: 37054874--37054932 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
37054864 GAATTTGAAC
37054874 TTTAAAAAAATTAAATA
1 TTTAAAAAAATTAAATA
*
37054891 TTTAAAAAAATT-CATGA
1 TTTAAAAAAATTAAAT-A
*
37054908 -TTAAAATTAAATAAAATA
1 TTTAAAA--AAATTAAATA
37054926 TTTAAAA
1 TTTAAAA
37054933 TATAACTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
16 8 0.24
17 13 0.38
18 5 0.15
19 8 0.24
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
TTTAAAAAAATTAAATA
Found at i:37058629 original size:115 final size:114
Alignment explanation
Indices: 37058418--37058907 Score: 572
Period size: 115 Copynumber: 4.3 Consensus size: 114
37058408 AGACAAATAA
** * * * * *
37058418 TTTTTTTGTAGCGCTTTCCCACAAACGCCGCTAAATCCCAGAGCATTAGCGGCGCTGTATTAAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAAA
* * * * *
37058483 ACGCCACTAAAGCCCCCGAAAGGTCAGAAAACGGCGTTGTTGGGCTTATG
66 ACGCCACTAAA-TCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG
*
37058533 TTTTTTTGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAAA
* * * *
37058598 AAGCCGCTAAATCCCCGAAAAGATCAAAAAACGGCGTCGTTGGACTTAGG
66 ACGCCACTAAATCCCCG-AAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG
* * * ** *
37058648 TTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAATCCTTGAGCATTAGCGGCGC-TTCCTGAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAAA
* * * * *
37058712 ACGCTACTAAATCCCCGAATGCTCAGAAAATGGTGTCGTTGGGCTTAGG
66 ACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG
* * * * ** *
37058761 TTTTTTTGAGGCGCTTTCTCAAAAATGCCGCTAACGCCCTCAGCATTAGCGGCGCTTCCTCAAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAAA
* * * *
37058826 ACGCCGCTAAATACCCGAATGCT-AAAAAACGGCGTCGTTGGGCTTAAG
66 ACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG
* *
37058874 -TTTTTTACGGCGCTTCCTCAAAAACGCCGCTAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
37058908 TCCCCGAATT
Statistics
Matches: 318, Mismatches: 55, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
112 29 0.09
113 95 0.30
114 50 0.16
115 144 0.45
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (114 bp):
TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAAA
ACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG
Found at i:37058817 original size:228 final size:228
Alignment explanation
Indices: 37058418--37058911 Score: 652
Period size: 228 Copynumber: 2.2 Consensus size: 228
37058408 AGACAAATAA
* * * *
37058418 TTTTTTTGTAGCGCTTTCCCACAAACGCCGCTAAATCCCAGAGCATTAGCGGCGCTGTATTAAAA
1 TTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAATCCCAGAGCATTAGCGGCGCTGTACTAAAA
* * * *
37058483 ACGCCACTAAAGCCCCCGAAAGGTCAGAAAACGGCGTTGTTGGGCTTATGTTTTTTTGCGGCGCT
66 ACGCCACTAAAGCCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGAGGCGCT
* * * *
37058548 TTATCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAAAAAGCCGCTAAATCCC
131 TTATCAAAAACGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCATCAAAAAAGCCGCTAAATACC
*
37058613 CGAAAAGATCAAAAAACGGCGTCGTTGGACTTAGG
196 CG-AAAGAT-AAAAAACGGCGTCGTTGGACTTAAG
** * *
37058648 TTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAATCCTTGAGCATTAGCGGCGCT-TCCTGAAA
1 TTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAATCCCAGAGCATTAGCGGCGCTGTACTAAAA
* * * * *
37058712 ACGCTACTAAA-TCCCCGAATGCTCAGAAAATGGTGTCGTTGGGCTTAGGTTTTTTTGAGGCGCT
66 ACGCCACTAAAGCCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGAGGCGCT
* * * * *
37058776 TTCTCAAAAATGCCGCTAACGCCCTCAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAATACC
131 TTATCAAAAACGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCATCAAAAAAGCCGCTAAATACC
* * *
37058841 CGAATGCTAAAAAACGGCGTCGTTGGGCTTAAG
196 CGAAAGATAAAAAACGGCGTCGTTGGACTTAAG
* * *
37058874 -TTTTTTACGGCGCTTCCTCAAAAACGCCGCTAAATCCC
1 TTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAATCCC
37058912 CGAATTCTCA
Statistics
Matches: 230, Mismatches: 34, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
225 34 0.15
226 23 0.10
227 4 0.02
228 103 0.45
229 15 0.07
230 51 0.22
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (228 bp):
TTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAATCCCAGAGCATTAGCGGCGCTGTACTAAAA
ACGCCACTAAAGCCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGAGGCGCT
TTATCAAAAACGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCATCAAAAAAGCCGCTAAATACC
CGAAAGATAAAAAACGGCGTCGTTGGACTTAAG
Found at i:37058979 original size:74 final size:74
Alignment explanation
Indices: 37058809--37059055 Score: 365
Period size: 74 Copynumber: 3.4 Consensus size: 74
37058799 CTCAGCATTA
* * * *
37058809 GCGGCGCTTCCTCAAAAACGCCGCTAAATACCCGAATGCT-AAAAAACGGCGTCGTTGGGCTTAA
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATACTCAGAAAACGGCGTCGTTGGGCTTAG
37058873 G--TTTTTT
66 GTTTTTTTT
* * *
37058880 ACGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATTCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATACTCAGAAAACGGCGTCGTTGGGCTTAG
37058945 GTTTTTTTT
66 GTTTTTTTT
* * *
37058954 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATACTCAGAGAACGGCGTTGTTGGGCTTAG
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATACTCAGAAAACGGCGTCGTTGGGCTTAG
37059019 GTTTTTTTT
66 GTTTTTTTT
* *
37059028 GCAGCGCTTTCTCAAAAACGCCGCTAAA
1 GCGGCGCTTCCTCAAAAACGCCGCTAAA
37059056 GCCCTGAGCA
Statistics
Matches: 160, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
71 37 0.23
72 22 0.14
74 101 0.63
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (74 bp):
GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATACTCAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTTTT
Found at i:37059070 original size:260 final size:259
Alignment explanation
Indices: 37058696--37059167 Score: 707
Period size: 260 Copynumber: 1.8 Consensus size: 259
37058686 TTGAGCATTA
* * * * *
37058696 GCGGCGCTTCCTGAAAACGCTACTAAATCCCCGAATGCTCAGAAAATGGTGTCGTTGGGCTTAGG
1 GCGGCGCTTCCTAAAAACGCCACTAAATCCCCGAATACTCAGAAAACGGCGTCGTTGGGCTTAGG
* *
37058761 TTTTTTTGAGGCGCTTTCTCAAAAATGCCGCTAACGCCCTCAGCATTAGCGGCGCTTCCTCAAAA
66 TTTTTTTGAGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCCTCAAAA
* *
37058826 ACGCCGCTAAATACCCGAATGCT-AAAAAACGGCGTCGTTGGGCTTAAGTTTTTTACGGCGCTTC
131 ACGCCGCTAAATACCCAAATGCTCAAAAAACGACGTCGTTGGGCTTAAGTTTTTTACGGCGCTTC
*
37058890 CTCA-AAAACGCCGCTAAATCCCCGAATTCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTT
196 CT-AGAAAACACCGCTAAATCCCCGAATTCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTT
* * * *
37058954 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATACTCAGAGAACGGCGTTGTTGGGCTTAG
1 GCGGCGCTTCCT-AAAAACGCCACTAAATCCCCGAATACTCAGAAAACGGCGTCGTTGGGCTTAG
*
37059019 GTTTTTTTTGCA-GCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTCA
65 G-TTTTTTTG-AGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCCTCA
* * * *
37059083 AAAACGCCGCTAAATCCCCAAATGCTCAAAAACCGACGTCGTTGGGCTTAGGTTTTTTGCGGCGC
128 AAAACGCCGCTAAATACCCAAATGCTCAAAAAACGACGTCGTTGGGCTTAAGTTTTTTACGGCGC
*
37059148 TTTCTAGAAAACACCGCTAA
193 TTCCTAGAAAACACCGCTAA
37059168 TGCCTATTTT
Statistics
Matches: 189, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
258 11 0.06
259 45 0.24
260 82 0.43
261 51 0.27
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (259 bp):
GCGGCGCTTCCTAAAAACGCCACTAAATCCCCGAATACTCAGAAAACGGCGTCGTTGGGCTTAGG
TTTTTTTGAGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCCTCAAAA
ACGCCGCTAAATACCCAAATGCTCAAAAAACGACGTCGTTGGGCTTAAGTTTTTTACGGCGCTTC
CTAGAAAACACCGCTAAATCCCCGAATTCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTT
Found at i:37059085 original size:115 final size:113
Alignment explanation
Indices: 37058954--37059167 Score: 306
Period size: 115 Copynumber: 1.9 Consensus size: 113
37058944 GGTTTTTTTT
* * * * *
37058954 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATACTCAGAGAA-CGGCGTTGTTGGGCTTA
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCAAATACTCA-AAAACCGACGTCGTTGGGCTTA
*
37059018 GGTTTTTTTTGCAGCGCTTTCTCA-AAAACGCCGCTAAAGCCCTGAGCATTA
65 GG--TTTTTTGCAGCGCTTTCT-AGAAAACACCGCTAAAGCCCTGAGCATTA
*
37059069 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCAAATGCTCAAAAACCGACGTCGTTGGGCTTAG
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCAAATACTCAAAAACCGACGTCGTTGGGCTTAG
*
37059134 GTTTTTTGCGGCGCTTTCTAGAAAACACCGCTAA
66 GTTTTTTGCAGCGCTTTCTAGAAAACACCGCTAA
37059168 TGCCTATTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
112 1 0.01
113 29 0.33
114 3 0.03
115 56 0.63
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (113 bp):
GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCAAATACTCAAAAACCGACGTCGTTGGGCTTAG
GTTTTTTGCAGCGCTTTCTAGAAAACACCGCTAAAGCCCTGAGCATTA
Found at i:37059305 original size:12 final size:11
Alignment explanation
Indices: 37059287--37059341 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
37059277 GTGTGAACAG
37059287 CATTTAATCAA
1 CATTTAATCAA
37059298 CAATTTAA-CAA
1 C-ATTTAATCAA
*
37059309 CATTCAATCAA
1 CATTTAATCAA
* *
37059320 TATTT-ATACAG
1 CATTTAAT-CAA
37059331 CATTTAATCAA
1 CATTTAATCAA
37059342 TAATTTTTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
10 7 0.21
11 19 0.56
12 8 0.24
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (11 bp):
CATTTAATCAA
Found at i:37059312 original size:22 final size:21
Alignment explanation
Indices: 37059282--37059347 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
37059272 GTGTAGTGTG
37059282 AACAGCATTTAATCAACAATTT
1 AACAGCATTTAATCAA-AATTT
* * *
37059304 AACAACATTCAATCAATATTT
1 AACAGCATTTAATCAAAATTT
37059325 ATACAGCATTTAATCAATAATTT
1 A-ACAGCATTTAATCAA-AATTT
37059348 TTACTTCAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 5 0.14
22 27 0.75
23 4 0.11
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (21 bp):
AACAGCATTTAATCAAAATTT
Found at i:37060221 original size:42 final size:43
Alignment explanation
Indices: 37060122--37060239 Score: 141
Period size: 42 Copynumber: 2.8 Consensus size: 43
37060112 AGCTCGTACA
* * *
37060122 ATGCCAACGTCCCAGACGTGGTCTTTCATGTAATCAAACAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACAACG
* * * *
37060165 ATGCCACTGTCCCAGATA-GAGTCTTACATGTAATCATA-TACG
1 ATGCCAATGTCCCAGACATG-GTCTTACATGTAATCAAACAACG
*
37060207 ATGCCAATGTCCCAGACATGGTCTTACACGTAA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAA
37060240 ATCTCAAATC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 32 0.51
43 31 0.49
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACAACG
Found at i:37061912 original size:5 final size:5
Alignment explanation
Indices: 37061902--37061971 Score: 90
Period size: 5 Copynumber: 13.8 Consensus size: 5
37061892 TCTCCTTGTA
*
37061902 TTTAT TTTA- TTTAT TATT-T ATTTAG TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT T-TTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
37061952 TTTAT TTTATT TTTAT TTTA
1 TTTAT TTTA-T TTTAT TTTA
37061972 GTTCTAGACA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
4 4 0.07
5 46 0.79
6 8 0.14
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:37062056 original size:24 final size:25
Alignment explanation
Indices: 37062029--37062076 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
37062019 ACCTTTAGTG
*
37062029 TTATTCTTACTATC-TTTTTTATTT
1 TTATTCTTACTACCATTTTTTATTT
* *
37062053 TTATTTTTATTACCATTTTTTATT
1 TTATTCTTACTACCATTTTTTATT
37062077 ATCAATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (25 bp):
TTATTCTTACTACCATTTTTTATTT
Found at i:37062173 original size:23 final size:24
Alignment explanation
Indices: 37062131--37062177 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
37062121 ATTCGTAGGT
*
37062131 TCTATTTTTATTATCTTTTCATCA
1 TCTATTTTCATTATCTTTTCATCA
37062155 TCTATTTTCATTATC-TTTCATCA
1 TCTATTTTCATTATCTTTTCATCA
37062178 AAAAACATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (24 bp):
TCTATTTTCATTATCTTTTCATCA
Found at i:37063008 original size:25 final size:26
Alignment explanation
Indices: 37062980--37063090 Score: 86
Period size: 25 Copynumber: 4.4 Consensus size: 26
37062970 ACAGCTCTCT
**
37062980 TGAGCTTCCCGATACTTGA-CTCTTA
1 TGAGCTTCCCGATACTTGAGCTCACA
* ** *
37063005 TGAGTTTTTCGATATTTG-GCTCACA
1 TGAGCTTCCCGATACTTGAGCTCACA
* ** **
37063030 AGAGCTTCCCGATA-TACAGCTCGTA
1 TGAGCTTCCCGATACTTGAGCTCACA
*
37063055 TGAGCTTCCCGTTACTT-AGCTCACA
1 TGAGCTTCCCGATACTTGAGCTCACA
37063080 TGAGCTTCCCG
1 TGAGCTTCCCG
37063091 TTATATGGCT
Statistics
Matches: 64, Mismatches: 19, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
24 1 0.02
25 62 0.97
26 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (26 bp):
TGAGCTTCCCGATACTTGAGCTCACA
Found at i:37063057 original size:50 final size:49
Alignment explanation
Indices: 37062981--37063095 Score: 113
Period size: 50 Copynumber: 2.3 Consensus size: 49
37062971 CAGCTCTCTT
** * * ** * *
37062981 GAGCTTCCCGATACTTGACTCTTATGAGTTTTTCGATATTTGGCTCACAA
1 GAGCTTCCCGATA-TACACTCGTATGAGCTTCCCGATACTTAGCTCACAA
* *
37063031 GAGCTTCCCGATATACAGCTCGTATGAGCTTCCCGTTACTTAGCTCACAT
1 GAGCTTCCCGATATACA-CTCGTATGAGCTTCCCGATACTTAGCTCACAA
*
37063081 GAGCTTCCCGTTATA
1 GAGCTTCCCGATATA
37063096 TGGCTCAGAA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
49 2 0.04
50 51 0.96
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (49 bp):
GAGCTTCCCGATATACACTCGTATGAGCTTCCCGATACTTAGCTCACAA
Found at i:37063101 original size:25 final size:25
Alignment explanation
Indices: 37063023--37063117 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
37063013 TCGATATTTG
* *
37063023 GCTCACAAGAGCTTCCCGATATACA
1 GCTCACAAGAGCTTCCCGTTATATA
** *
37063048 GCTCGTATGAGCTTCCCGTTACT-TA
1 GCTCACAAGAGCTTCCCGTTA-TATA
* *
37063073 GCTCACATGAGCTTCCCGTTATATG
1 GCTCACAAGAGCTTCCCGTTATATA
* *
37063098 GCTCAGAAGAGTTTCCCGTT
1 GCTCACAAGAGCTTCCCGTT
37063118 TACATGCTTG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.02
25 55 0.96
26 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (25 bp):
GCTCACAAGAGCTTCCCGTTATATA
Found at i:37063114 original size:50 final size:50
Alignment explanation
Indices: 37063023--37063117 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
37063013 TCGATATTTG
*
37063023 GCTCACAAGAGCTTCCCGATATACAGCTCGTATGAGCTTCCCGTTACTTA
1 GCTCACAAGAGCTTCCCGATATACAGCTCGTAAGAGCTTCCCGTTACTTA
* * ** *
37063073 GCTCACATGAGCTTCCCGTTATATGGCTCAG-AAGAGTTTCCCGTT
1 GCTCACAAGAGCTTCCCGATATACAGCTC-GTAAGAGCTTCCCGTT
37063118 TACATGCTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 37 0.97
51 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
GCTCACAAGAGCTTCCCGATATACAGCTCGTAAGAGCTTCCCGTTACTTA
Found at i:37063896 original size:28 final size:28
Alignment explanation
Indices: 37063860--37063964 Score: 131
Period size: 28 Copynumber: 3.8 Consensus size: 28
37063850 CAGTAATAGT
**
37063860 ACAGTGTGGGCCTTAGCTTAGA-ACAGTA
1 ACAGTGTGGGCCTTAGCCCA-ATACAGTA
* *
37063888 ACAGTGTGGGCTTTAGCCCAATATAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
37063916 ATAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
* *
37063944 ACAGTTTAGGCCTTAGCCCAA
1 ACAGTGTGGGCCTTAGCCCAA
37063965 AACAATAATA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 1 0.02
28 65 0.98
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:37063906 original size:61 final size:61
Alignment explanation
Indices: 37063841--37063982 Score: 152
Period size: 56 Copynumber: 2.4 Consensus size: 61
37063831 TCTGGGCCGG
* ** * *
37063841 AGCCCTATACAGTAATAGTACAGTGTGGGCCTTAGCTTAGA-ACAGTAACAGTGTGGGCTTT
1 AGCCCAATACAGTAATAGTACAGTGTGGGCCTTAGCCCA-ATACAGTAACAGTGTAGGCCTT
* *
37063902 AGCCCAATATAGT-A-A-T--AGTGTGGGCCTTAGCCCAATACAGTAACAGTTTAGGCCTT
1 AGCCCAATACAGTAATAGTACAGTGTGGGCCTTAGCCCAATACAGTAACAGTGTAGGCCTT
* *
37063958 AGCCCAAAACAATAATAGTACAGTG
1 AGCCCAATACAGTAATAGTACAGTG
37063983 CAATAATGCA
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
55 1 0.02
56 43 0.66
57 1 0.02
58 2 0.03
59 2 0.03
60 1 0.02
61 15 0.23
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (61 bp):
AGCCCAATACAGTAATAGTACAGTGTGGGCCTTAGCCCAATACAGTAACAGTGTAGGCCTT
Found at i:37064352 original size:27 final size:27
Alignment explanation
Indices: 37064301--37064566 Score: 228
Period size: 27 Copynumber: 9.9 Consensus size: 27
37064291 GCTATAACAG
*
37064301 TCATTTTACCCTATAAGGGTGT-TTT-GA
1 TCATTTTACCCT-TCAGGG-GTATTTCGA
* *
37064328 TCATTTTACCCTTTC-GCGGTATTT-TA
1 TCATTTTACCC-TTCAGGGGTATTTCGA
*
37064354 GTCATTTTACCCTTC-GGAGGTATTTCGG
1 -TCATTTTACCCTTCAGG-GGTATTTCGA
* *
37064382 TCATTTTACTCTTC-GAGGGTATTTCGG
1 TCATTTTACCCTTCAG-GGGTATTTCGA
*
37064409 TCATTTTACCCTTCAGGGGTATTCCGA
1 TCATTTTACCCTTCAGGGGTATTTCGA
*
37064436 TCATTTTACCC-TC-GTGGATATTTC-A
1 TCATTTTACCCTTCAG-GGGTATTTCGA
* *
37064461 GTCATTTTACCCTCCGGGGGTATTTCGA
1 -TCATTTTACCCTTCAGGGGTATTTCGA
* **
37064489 TCATTTTACCATTC-GAGGGTATTTAAA
1 TCATTTTACCCTTCAG-GGGTATTTCGA
* * *
37064516 TTATTTTACCCTTCAAGGGTATTTCGG
1 TCATTTTACCCTTCAGGGGTATTTCGA
*
37064543 TCATTTTACCCTTCAAGGGTATTT
1 TCATTTTACCCTTCAGGGGTATTT
37064567 TAGTTATTTG
Statistics
Matches: 200, Mismatches: 25, Indels: 28
0.79 0.10 0.11
Matches are distributed among these distances:
25 4 0.02
26 31 0.16
27 160 0.80
28 5 0.03
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTTCAGGGGTATTTCGA
Found at i:37064386 original size:54 final size:54
Alignment explanation
Indices: 37064298--37064575 Score: 278
Period size: 54 Copynumber: 5.2 Consensus size: 54
37064288 AAGGCTATAA
** * * *
37064298 CAGTCATTTTACCCTATAAG-GGTGTTTTGATCATTTTACCCTTTCG-CGGTATTT
1 CAGTCATTTTACCCT-TCGGAGGTATTTCGATCATTTTACCC-TTCGAGGGTATTT
* * *
37064352 TAGTCATTTTACCCTTCGGAGGTATTTCGGTCATTTTACTCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGGAGGTATTTCGATCATTTTACCCTTCGAGGGTATTT
* * * *
37064406 CGGTCATTTTACCCTTCAGG-GGTATTCCGATCATTTTACCC-TCGTGGATATTT
1 CAGTCATTTTACCCTTC-GGAGGTATTTCGATCATTTTACCCTTCGAGGGTATTT
* * *
37064459 CAGTCATTTTACCCTCCGGGGGTATTTCGATCATTTTACCATTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGGAGGTATTTCGATCATTTTACCCTTCGAGGGTATTT
* * * * * *
37064513 AAATTATTTTACCCTTC-AAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGGA-GGTATTTCGATCATTTTACCCTTCGAGGGTATTT
* *
37064567 TAGTTATTT
1 CAGTCATTT
37064576 GCCCATGAAT
Statistics
Matches: 186, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.01
53 50 0.27
54 132 0.71
55 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.43
Consensus pattern (54 bp):
CAGTCATTTTACCCTTCGGAGGTATTTCGATCATTTTACCCTTCGAGGGTATTT
Found at i:37064487 original size:107 final size:105
Alignment explanation
Indices: 37064299--37064554 Score: 309
Period size: 107 Copynumber: 2.4 Consensus size: 105
37064289 AGGCTATAAC
* * *
37064299 AGTCATTTTACCCTATAAGGGTGT-TTTGATCATTTTACCCTTTCGCGGTATTTTAGTCATTTTA
1 AGTCATTTTACCCT-TCAGGG-GTATTCGATCATTTTACCC--TCGCGGTATTTCAGTCATTTTA
* * *
37064363 CCCTTCGGAGGTATTTCGGTCATTTTACTC-TTCGAGGGTATTTC
62 CCCTCCGGAGGTATTTCGATCATTTTAC-CATTCGAGGGTATTTA
* *
37064407 GGTCATTTTACCCTTCAGGGGTATTCCGATCATTTTACCCTCGTGGATATTTCAGTCATTTTACC
1 AGTCATTTTACCCTTCAGGGGTATT-CGATCATTTTACCCTCGCGG-TATTTCAGTCATTTTACC
*
37064472 CTCCGGGGGTATTTCGATCATTTTACCATTCGAGGGTATTTA
64 CTCCGGAGGTATTTCGATCATTTTACCATTCGAGGGTATTTA
* * * *
37064514 AATTATTTTACCCTTCAAGGGTATTTCGGTCATTTTACCCT
1 AGTCATTTTACCCTTCAGGGGTA-TTCGATCATTTTACCCT
37064555 TCAAGGGTAT
Statistics
Matches: 129, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
106 8 0.06
107 93 0.72
108 28 0.22
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (105 bp):
AGTCATTTTACCCTTCAGGGGTATTCGATCATTTTACCCTCGCGGTATTTCAGTCATTTTACCCT
CCGGAGGTATTTCGATCATTTTACCATTCGAGGGTATTTA
Found at i:37070426 original size:21 final size:22
Alignment explanation
Indices: 37070400--37070440 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
37070390 AGATCATTAA
37070400 TTTTATCTCTTTT-ATTTTTAG
1 TTTTATCTCTTTTCATTTTTAG
* *
37070421 TTTTATTTTTTTTCATTTTT
1 TTTTATCTCTTTTCATTTTT
37070441 TTGTTTCTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.78
Consensus pattern (22 bp):
TTTTATCTCTTTTCATTTTTAG
Found at i:37086710 original size:21 final size:22
Alignment explanation
Indices: 37086671--37086711 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
37086661 TCAAAAATAA
*
37086671 TAATACAAATGGATGAATTTTT
1 TAATACAAATGGATCAATTTTT
*
37086693 TAATAGAAA-GGATCAATTT
1 TAATACAAATGGATCAATTT
37086712 ACTATTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.37
Consensus pattern (22 bp):
TAATACAAATGGATCAATTTTT
Found at i:37089800 original size:20 final size:20
Alignment explanation
Indices: 37089775--37089812 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37089765 GTAGTGGAAA
37089775 TTTATTTTCTTA-GAATAAAT
1 TTTATTTT-TTAGGAATAAAT
37089795 TTTATTTTTTAGGAATAA
1 TTTATTTTTTAGGAATAA
37089813 TAATTTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (20 bp):
TTTATTTTTTAGGAATAAAT
Found at i:37093686 original size:29 final size:28
Alignment explanation
Indices: 37093640--37093762 Score: 92
Period size: 29 Copynumber: 4.4 Consensus size: 28
37093630 GGAAACAAAT
* *
37093640 ACAGAGTTGCACCAAAGTGCATTAACAGA
1 ACAGAGGTGCACCGAAGTGCA-TAACAGA
**
37093669 ACAGAGGTGCACCGAAGTGCAATGCCAGA
1 ACAGAGGTGCACCGAAGTGC-ATAACAGA
* * * *
37093698 ACGGAGG-GCACCGTAGTGCA-ATCGGA
1 ACAGAGGTGCACCGAAGTGCATAACAGA
* *
37093724 ATAGAGG-ACACCGAAGTGC-TAACAGA
1 ACAGAGGTGCACCGAAGTGCATAACAGA
*
37093750 ATAGAGGGTGCAC
1 ACAGA-GGTGCAC
37093763 TAAATATCCT
Statistics
Matches: 74, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
26 27 0.36
27 3 0.04
28 14 0.19
29 29 0.39
30 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.30, T:0.13
Consensus pattern (28 bp):
ACAGAGGTGCACCGAAGTGCATAACAGA
Found at i:37093741 original size:26 final size:26
Alignment explanation
Indices: 37093678--37093756 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
37093668 AACAGAGGTG
** *
37093678 CACCGAAGTGCAATGCCAGAACGGAGGG
1 CACCGAAGTGCAAT--CAGAATAGAGGA
* *
37093706 CACCGTAGTGCAATCGGAATAGAGGA
1 CACCGAAGTGCAATCAGAATAGAGGA
37093732 CACCGAAGTGCTAA-CAGAATAGAGG
1 CACCGAAGTGC-AATCAGAATAGAGG
37093757 GTGCACTAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 28 0.65
27 2 0.05
28 13 0.30
ACGTcount: A:0.35, C:0.22, G:0.32, T:0.11
Consensus pattern (26 bp):
CACCGAAGTGCAATCAGAATAGAGGA
Found at i:37096812 original size:6 final size:6
Alignment explanation
Indices: 37096803--37096852 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
37096793 TTTATTTTAT
* *
37096803 TTAATA TTAATA TAATTATA TTTAT- TTAATA TTAATA TTAATA TTAATA
1 TTAATA TTAATA T--TAATA TTAATA TTAATA TTAATA TTAATA TTAATA
37096852 T
1 T
37096853 ATTTTTTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 4 0.10
6 30 0.77
8 5 0.13
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTAATA
Found at i:37096827 original size:25 final size:24
Alignment explanation
Indices: 37096794--37096840 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
37096784 AGAAGAATTT
37096794 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAATATTAATATAA
37096818 TTATATTTATTTAATATTAATAT
1 TTAT-TTTATTTAATATTAATAT
37096841 TAATATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:37096840 original size:31 final size:30
Alignment explanation
Indices: 37096793--37096871 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 30
37096783 TAGAAGAATT
*
37096793 TTTATTTTATTTAATATTAATA-TAATTATA
1 TTTATTTAATTTAATATTAATATTAA-TATA
37096823 TTTATTTAATATTAATATTAATATTAATATA
1 TTTATTTAAT-TTAATATTAATATTAATATA
*
37096854 TTT-TTTAATTTATTATTA
1 TTTATTTAATTTAATATTA
37096872 TACTTTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
29 8 0.18
30 15 0.33
31 19 0.42
32 3 0.07
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTATTTAATTTAATATTAATATTAATATA
Found at i:37096900 original size:21 final size:19
Alignment explanation
Indices: 37096876--37096928 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
37096866 TTATTATACT
*
37096876 TTTTTTGAAATTATTTATGTA
1 TTTTTT-AAATT-TTTATGAA
*
37096897 TTTTTATAAATTTTTTTGAA
1 TTTTT-TAAATTTTTATGAA
37096917 TTTTTTAGAATT
1 TTTTTTA-AATT
37096929 AGGATCAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 2 0.07
20 15 0.54
21 10 0.36
22 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (19 bp):
TTTTTTAAATTTTTATGAA
Found at i:37097650 original size:8 final size:7
Alignment explanation
Indices: 37097625--37097655 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
37097615 ATCCTTATAT
37097625 ATTTTAA
1 ATTTTAA
37097632 ATTTTAA
1 ATTTTAA
37097639 ATTTTAAA
1 ATTTT-AA
37097647 ATTTTAA
1 ATTTTAA
37097654 AT
1 AT
37097656 CTGACCGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTTTAA
Found at i:37097650 original size:15 final size:14
Alignment explanation
Indices: 37097625--37097655 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
37097615 ATCCTTATAT
37097625 ATTTTAAATTTTAA
1 ATTTTAAATTTTAA
37097639 ATTTTAAAATTTTAA
1 ATTTT-AAATTTTAA
37097654 AT
1 AT
37097656 CTGACCGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTAAATTTTAA
Found at i:37106152 original size:63 final size:63
Alignment explanation
Indices: 37106070--37106214 Score: 191
Period size: 63 Copynumber: 2.3 Consensus size: 63
37106060 CCTATAGAAA
* * * * * * *
37106070 GTGTTGATGTAGAGAATGATTGTGTGTGTTGTGATGCTTGTATAAAATAAACGGGTGTTGAAT
1 GTGTTGATGCAGGGAATGATTGTGCGTGTTGTGATGCTTATATAAAATAAACCGGAGCTGAAT
* *
37106133 GTGTTGATGCAGGGAATGATTGTGCGTGTTGTGGTGCTTATGTAAAATAAACCGGAGCTGAAT
1 GTGTTGATGCAGGGAATGATTGTGCGTGTTGTGATGCTTATATAAAATAAACCGGAGCTGAAT
* *
37106196 GTGTAGATGCGGGGAATGA
1 GTGTTGATGCAGGGAATGA
37106215 GTGTATGGGG
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.26, C:0.06, G:0.34, T:0.33
Consensus pattern (63 bp):
GTGTTGATGCAGGGAATGATTGTGCGTGTTGTGATGCTTATATAAAATAAACCGGAGCTGAAT
Found at i:37114029 original size:21 final size:21
Alignment explanation
Indices: 37114003--37114043 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
37113993 CCACCGCCAG
37114003 CCTTTTTCTGCTCCCCTCCAC
1 CCTTTTTCTGCTCCCCTCCAC
37114024 CCTTTTTCTGCTCCCCTCCA
1 CCTTTTTCTGCTCCCCTCCA
37114044 GCCATATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.05, C:0.51, G:0.05, T:0.39
Consensus pattern (21 bp):
CCTTTTTCTGCTCCCCTCCAC
Found at i:37123751 original size:9 final size:9
Alignment explanation
Indices: 37123737--37123770 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
37123727 TTTGGTTAAA
37123737 AATTACCCG
1 AATTACCCG
37123746 AATTACCCG
1 AATTACCCG
*
37123755 AATTAACCG
1 AATTACCCG
37123764 AATTACC
1 AATTACC
37123771 GAAAAATACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.38, C:0.29, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:37131286 original size:27 final size:28
Alignment explanation
Indices: 37131250--37131302 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
37131240 TCATTTGCTA
* *
37131250 TTATATTTAAATTTTTAAAT-ATTTAAT
1 TTATAATTAAATTTATAAATAATTTAAT
37131277 TTATAATTAAATTTATAAATAATTTA
1 TTATAATTAAATTTATAAATAATTTA
37131303 TTAATTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
TTATAATTAAATTTATAAATAATTTAAT
Found at i:37131312 original size:27 final size:27
Alignment explanation
Indices: 37131256--37131314 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
37131246 GCTATTATAT
* *
37131256 TTAAATTTTTAAATATTTAATTTATAA
1 TTAAATTTATAAATATTTAATTAATAA
*
37131283 TTAAATTTATAAATAATTT-ATTAATTA
1 TTAAATTTATAAAT-ATTTAATTAATAA
37131310 TTAAA
1 TTAAA
37131315 AGGTTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TTAAATTTATAAATATTTAATTAATAA
Found at i:37131414 original size:33 final size:33
Alignment explanation
Indices: 37131377--37131496 Score: 89
Period size: 33 Copynumber: 3.4 Consensus size: 33
37131367 TTAATTTATT
37131377 TTTTAATTTTCAATATCATGTATAAAATAAACA
1 TTTTAATTTTCAATATCATGTATAAAATAAACA
* * ** *
37131410 TTTTAATTTCTCACGACAAAT-ATTTAATTTTCATTAGAACA
1 TTTTAATTT-T--C-A-ATATCATGT-A--TAAAATA-AACA
* *
37131451 TTTTAATTTTTAATATCATGTATAAAATGAACA
1 TTTTAATTTTCAATATCATGTATAAAATAAACA
37131484 TTTTAATTTTCAA
1 TTTTAATTTTCAA
37131497 AAACATTTCT
Statistics
Matches: 64, Mismatches: 13, Indels: 20
0.66 0.13 0.21
Matches are distributed among these distances:
33 25 0.39
34 4 0.06
36 5 0.08
37 8 0.12
38 4 0.06
40 5 0.08
41 13 0.20
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.46
Consensus pattern (33 bp):
TTTTAATTTTCAATATCATGTATAAAATAAACA
Found at i:37131810 original size:59 final size:58
Alignment explanation
Indices: 37131746--37131929 Score: 198
Period size: 64 Copynumber: 3.1 Consensus size: 58
37131736 ATTATTATTA
*
37131746 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATA-TAATTATTCTTATATGAATTTACTAAAATCAT
* * * * *
37131805 AATAT-ATAATAGTATAAAATATAATTTAAAATAATTATTATTAAATAT-AATTTAATAAAA--A
1 AATATAAT-TTA--ATAAAAT-T--CTTAATATAATTATTCTT--ATATGAATTTACTAAAATCA
37131866 T
58 T
37131867 -ATATAATTTAATAAAATTCTTAATATAATTATTCTTATATGAATTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATAATTATTCTTATATGAATTTACTAAAATCAT
37131924 AATATA
1 AATATA
37131930 TAATACTATA
Statistics
Matches: 101, Mismatches: 11, Indels: 27
0.73 0.08 0.19
Matches are distributed among these distances:
54 4 0.04
55 11 0.11
56 15 0.15
57 2 0.02
58 8 0.08
59 14 0.14
61 13 0.13
62 5 0.05
63 9 0.09
64 16 0.16
65 4 0.04
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (58 bp):
AATATAATTTAATAAAATTCTTAATATAATTATTCTTATATGAATTTACTAAAATCAT
Found at i:37131921 original size:119 final size:120
Alignment explanation
Indices: 37131747--37132003 Score: 453
Period size: 119 Copynumber: 2.1 Consensus size: 120
37131737 TTATTATTAA
37131747 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
* * *
37131812 AATAGTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAAT
66 AATACTATAAAATATAATCTAAAATAATTATTATTAAATATAATTTAATAAAAAC
*
37131867 ATATAATTTAATAAAATTCTTAATA-TAATTATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
*
37131931 AATACTATAAAATATAATCTAAAATAATTATTATTAACTATAATTTAATAAAAAC
66 AATACTATAAAATATAATCTAAAATAATTATTATTAAATATAATTTAATAAAAAC
*
37131986 ATATAATTTAATATAATT
1 ATATAATTTAATAAAATT
37132004 ATTCTTATAT
Statistics
Matches: 131, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 106 0.81
120 25 0.19
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (120 bp):
ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
AATACTATAAAATATAATCTAAAATAATTATTATTAAATATAATTTAATAAAAAC
Found at i:37131990 original size:44 final size:43
Alignment explanation
Indices: 37131942--37132031 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 43
37131932 ATACTATAAA
37131942 ATATAATCTAAAATAATTATTATTAACTAT-AATTTAATAAAAAC
1 ATATAATCTAAAATAATTATTATT-A-TATGAATTTAATAAAAAC
* * * * *
37131986 ATATAATTTAATATAATTATTCTTATATGAATTTACTAAAATC
1 ATATAATCTAAAATAATTATTATTATATGAATTTAATAAAAAC
37132029 ATA
1 ATA
37132032 ATATATAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
42 3 0.08
43 16 0.40
44 21 0.52
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.42
Consensus pattern (43 bp):
ATATAATCTAAAATAATTATTATTATATGAATTTAATAAAAAC
Found at i:37132041 original size:43 final size:44
Alignment explanation
Indices: 37131937--37132041 Score: 105
Period size: 43 Copynumber: 2.5 Consensus size: 44
37131927 ATATAATACT
*
37131937 ATAAAAT-ATAATCTA-AA-ATAATTATTATTAACTATAATTTA
1 ATAAAATCATAATATATAATATAATTATTATTAACTATAATTTA
* * *
37131978 ATAAAAACAT-ATAATTTAATATAATTATTCTT-A-TATGAATTTA
1 ATAAAATCATAAT-ATATAATATAATTATTATTAACTAT-AATTTA
*
37132021 CTAAAATCATAATATATAATA
1 ATAAAATCATAATATATAATA
37132042 CTATAAAAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
41 8 0.16
42 6 0.12
43 24 0.47
44 13 0.25
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (44 bp):
ATAAAATCATAATATATAATATAATTATTATTAACTATAATTTA
Found at i:37133408 original size:33 final size:33
Alignment explanation
Indices: 37133366--37133432 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
37133356 ATCGAATCCA
37133366 AATCTCTAATTCACTTTCAAGAAAGGAAATAAT
1 AATCTCTAATTCACTTTCAAGAAAGGAAATAAT
37133399 AATCTCTAATTCACTTTCAAGAAAGGAAATAAT
1 AATCTCTAATTCACTTTCAAGAAAGGAAATAAT
37133432 A
1 A
37133433 GTAATAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.30
Consensus pattern (33 bp):
AATCTCTAATTCACTTTCAAGAAAGGAAATAAT
Found at i:37135121 original size:17 final size:17
Alignment explanation
Indices: 37135099--37135132 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37135089 AACGATAGAG
37135099 ATAAAAAATCTTAACTC
1 ATAAAAAATCTTAACTC
*
37135116 ATAAAAAATCTTGACTC
1 ATAAAAAATCTTAACTC
37135133 CGAGTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.18, G:0.03, T:0.29
Consensus pattern (17 bp):
ATAAAAAATCTTAACTC
Found at i:37137914 original size:27 final size:27
Alignment explanation
Indices: 37137884--37137944 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
37137874 TATCTCGGTT
*
37137884 GACTATCCCATATTTAATG-TCTCGTCA
1 GACTATCCCATATTTAACGTTC-CGTCA
* * *
37137911 GACTATCTCGTGTTTAACGTTCCGTCA
1 GACTATCCCATATTTAACGTTCCGTCA
37137938 GACTATC
1 GACTATC
37137945 TATGATACCG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (27 bp):
GACTATCCCATATTTAACGTTCCGTCA
Found at i:37141655 original size:29 final size:29
Alignment explanation
Indices: 37141613--37141668 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
37141603 ATAAGAACTT
*
37141613 GATCAATTTAGTCCATGCACTATTAAATG
1 GATCAAATTAGTCCATGCACTATTAAATG
* *
37141642 GATCAAATTAGTCCTTGTACTATTAAA
1 GATCAAATTAGTCCATGCACTATTAAA
37141669 AAGGATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (29 bp):
GATCAAATTAGTCCATGCACTATTAAATG
Found at i:37142891 original size:37 final size:38
Alignment explanation
Indices: 37142826--37142903 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 38
37142816 AAAATCAAAG
*
37142826 TTGATTAATTGAAAAAATCAATCAAATT-AAAATTGAT
1 TTGATTAATTGAAAAAATCAATCAAATTAAAAATTAAT
* **
37142863 TTGATTAATTGAAAAAATCGATTGAATTAAAAATTAAT
1 TTGATTAATTGAAAAAATCAATCAAATTAAAAATTAAT
37142901 TTG
1 TTG
37142904 GTATATATGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 25 0.69
38 11 0.31
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.37
Consensus pattern (38 bp):
TTGATTAATTGAAAAAATCAATCAAATTAAAAATTAAT
Found at i:37159652 original size:11 final size:10
Alignment explanation
Indices: 37159635--37159672 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
37159625 TTTTAAAATA
37159635 TTTTTTTAAG
1 TTTTTTTAAG
37159645 TTTCTTTTAA-
1 TTT-TTTTAAG
37159655 TTTTTTTAAG
1 TTTTTTTAAG
37159665 TTTATTTT
1 TTT-TTTT
37159673 CGTTCTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 6 0.24
10 9 0.36
11 10 0.40
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (10 bp):
TTTTTTTAAG
Done.