Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 139 of 185
Found at i:42501497 original size:16 final size:16
Alignment explanation
Indices: 42501463--42501513 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
42501453 ACAAGTGTCA
* **
42501463 TATTTATTTATATACT
1 TATTTATTTTTATTTT
42501479 TATTTATTTTTATTTT
1 TATTTATTTTTATTTT
42501495 TATTTTTATTTTTATTTT
1 TA--TTTATTTTTATTTT
42501513 T
1 T
42501514 TTACTACACT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
16 15 0.50
18 15 0.50
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (16 bp):
TATTTATTTTTATTTT
Found at i:42501620 original size:10 final size:10
Alignment explanation
Indices: 42501602--42501643 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
42501592 ATAATTTTTC
*
42501602 TTTATTAATT
1 TTTAATAATT
42501612 TTTAATAATT
1 TTTAATAATT
*
42501622 ATT-ATAATT
1 TTTAATAATT
*
42501631 TTTAATGATT
1 TTTAATAATT
42501641 TTT
1 TTT
42501644 TGTTTTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTAATAATT
Found at i:42510145 original size:15 final size:15
Alignment explanation
Indices: 42510125--42510153 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
42510115 CCTACAATTC
42510125 AAAATTCTATTTAAG
1 AAAATTCTATTTAAG
42510140 AAAATTCTATTTAA
1 AAAATTCTATTTAA
42510154 TTTATCACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.41
Consensus pattern (15 bp):
AAAATTCTATTTAAG
Found at i:42511893 original size:7 final size:7
Alignment explanation
Indices: 42511877--42511908 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
42511867 TGCAAATAGA
*
42511877 TATTTTG
1 TATTTAG
42511884 TATTTAG
1 TATTTAG
42511891 TATTTAG
1 TATTTAG
42511898 TATTTAG
1 TATTTAG
42511905 TATT
1 TATT
42511909 ATGTATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
TATTTAG
Found at i:42511914 original size:14 final size:13
Alignment explanation
Indices: 42511880--42511914 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
42511870 AAATAGATAT
42511880 TTTGTATTTAGTA
1 TTTGTATTTAGTA
42511893 TTTAGTATTTAGTA
1 TTT-GTATTTAGTA
42511907 TTATGTAT
1 TT-TGTAT
42511915 ATAACTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 3 0.15
14 16 0.80
15 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (13 bp):
TTTGTATTTAGTA
Found at i:42513051 original size:25 final size:25
Alignment explanation
Indices: 42513023--42513504 Score: 358
Period size: 25 Copynumber: 19.9 Consensus size: 25
42513013 TGAATATTTT
*
42513023 GAAGTTTGTTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
*
42513048 GAAGTTT-TATTGATGTAATAAAAATT
1 GAAGTTTAT-TTGATGTAAT-AAAATA
* * ** *
42513074 GAAATTTTTTTGA-GT--T-ATTTT
1 GAAGTTTATTTGATGTAATAAAATA
42513095 G-A-TATTATTTGATGTAATAAAATA
1 GAAGT-TTATTTGATGTAATAAAATA
42513119 GAAGTTTATTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
* *
42513144 AAAGTTTATATGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
*
42513169 GAAGTTT-TATTGATGTAATAAAAATT
1 GAAGTTTAT-TTGATGTAAT-AAAATA
* * ** *
42513195 GAAATTTTTTTGA-GT--T-ATTTT
1 GAAGTTTATTTGATGTAATAAAATA
42513216 G-A-TATTATTTGATGTAATAAAATA
1 GAAGT-TTATTTGATGTAATAAAATA
42513240 GAAGTTTATTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
* *
42513265 AAAGTTTATATGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
*
42513290 GAAGTTT-TATTGATGTAATAAAAATT
1 GAAGTTTAT-TTGATGTAAT-AAAATA
* * **
42513316 GAAATTTTTTTGAGTTGT--TTTAAT-
1 GAAGTTTATTTGA--TGTAATAAAATA
42513340 --A--TTATTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
42513361 GAAGTTTATTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
* *
42513386 AAAGTTTATATGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
*
42513411 GAAGTTT-TATTGATGTAATAAAAATT
1 GAAGTTTAT-TTGATGTAAT-AAAATA
* * **
42513437 GAAATTTTTTTGAGTTGT--TTTAAT-
1 GAAGTTTATTTGA--TGTAATAAAATA
42513461 --A--TTATTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
*
42513482 GAAGTTTATTTGATGTGATAAAA
1 GAAGTTTATTTGATGTAATAAAA
42513505 ATTGAAAACC
Statistics
Matches: 370, Mismatches: 43, Indels: 88
0.74 0.09 0.18
Matches are distributed among these distances:
18 6 0.02
19 2 0.01
20 38 0.10
21 12 0.03
22 2 0.01
23 6 0.02
24 10 0.03
25 220 0.59
26 64 0.17
27 4 0.01
28 6 0.02
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (25 bp):
GAAGTTTATTTGATGTAATAAAATA
Found at i:42513238 original size:121 final size:121
Alignment explanation
Indices: 42513024--42513504 Score: 899
Period size: 121 Copynumber: 4.0 Consensus size: 121
42513014 GAATATTTTG
* *
42513024 AAGTTTGTTTGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
1 AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
*
42513089 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAA
66 TATTTTAATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAA
42513145 AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
1 AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
*
42513210 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAA
66 TATTTTAATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAA
42513266 AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
1 AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
*
42513331 TGTTTTAATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAA
66 TATTTTAATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAA
42513387 AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
1 AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
* *
42513452 TGTTTTAATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTGATAAAA
66 TATTTTAATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
42513505 ATTGAAAACC
Statistics
Matches: 355, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 355 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (121 bp):
AAGTTTATATGATGTAATAAAATAGAAGTTTTATTGATGTAATAAAAATTGAAATTTTTTTGAGT
TATTTTAATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAA
Found at i:42513530 original size:23 final size:23
Alignment explanation
Indices: 42513503--42513653 Score: 213
Period size: 23 Copynumber: 6.8 Consensus size: 23
42513493 GATGTGATAA
42513503 AAATTGAAAACCCTAACCTAATT
1 AAATTGAAAACCCTAACCTAATT
*
42513526 AAATTAAAAACCCTAACCTAATT
1 AAATTGAAAACCCTAACCTAATT
* *
42513549 AAGTTGTAAA--C---CCTAATT
1 AAATTGAAAACCCTAACCTAATT
*
42513567 AAGTTGAAAACCCTAACCTAATT
1 AAATTGAAAACCCTAACCTAATT
*
42513590 AAATTAAAAACCCTAACCTAATT
1 AAATTGAAAACCCTAACCTAATT
42513613 AAATTGAAAACCCTAACCTAATT
1 AAATTGAAAACCCTAACCTAATT
*
42513636 AAGTTGAAAACCCTAACC
1 AAATTGAAAACCCTAACC
42513654 CTTAACATTC
Statistics
Matches: 114, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
18 16 0.14
20 1 0.01
21 1 0.01
23 96 0.84
ACGTcount: A:0.47, C:0.22, G:0.05, T:0.26
Consensus pattern (23 bp):
AAATTGAAAACCCTAACCTAATT
Found at i:42513577 original size:41 final size:41
Alignment explanation
Indices: 42513519--42513651 Score: 176
Period size: 41 Copynumber: 3.1 Consensus size: 41
42513509 AAAACCCTAA
* *
42513519 CCTAATTAAATTAAAAACCCTAACCTAATTAAGTTGTAAAC
1 CCTAATTAAATTGAAAACCCTAACCTAATTAAGTTGAAAAC
* * *
42513560 CCTAATTAAGTTGAAAACCCTAACCTAATTAAATTAAAAACCC
1 CCTAATTAAATTGAAAACCCTAACCTAATTAAGTTGAAAA--C
42513603 TAACCTAATTAAATTGAAAACCCTAACCTAATTAAGTTGAAAAC
1 ---CCTAATTAAATTGAAAACCCTAACCTAATTAAGTTGAAAAC
42513647 CCTAA
1 CCTAA
42513652 CCCTTAACAT
Statistics
Matches: 79, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
41 40 0.51
43 1 0.01
44 1 0.01
46 37 0.47
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.27
Consensus pattern (41 bp):
CCTAATTAAATTGAAAACCCTAACCTAATTAAGTTGAAAAC
Found at i:42513586 original size:64 final size:66
Alignment explanation
Indices: 42513506--42513653 Score: 237
Period size: 64 Copynumber: 2.2 Consensus size: 66
42513496 GTGATAAAAA
* *
42513506 TTGAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAGTTGTAAA-C-CCTAATTAA
1 TTGAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAACCACCTAATTAA
42513569 G
66 G
42513570 TTGAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAAT
1 TTGAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAA-CC--ACCTAAT
42513635 TAAG
63 TAAG
42513639 TTGAAAACCCTAACC
1 TTGAAAACCCTAACC
42513654 CTTAACATTC
Statistics
Matches: 77, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
64 51 0.66
66 1 0.01
69 25 0.32
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.26
Consensus pattern (66 bp):
TTGAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAACCACCTAATTAA
G
Found at i:42514604 original size:124 final size:124
Alignment explanation
Indices: 42514378--42514616 Score: 356
Period size: 124 Copynumber: 1.9 Consensus size: 124
42514368 CCCAAACATG
* *
42514378 CTACTGTAGCAAAAGCGCGTCCCCAAGGGCGCGATTTTCACAAATTCTTCTCAAATAGTATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
42514443 GTAGAAGTGAATTTATACTATTTGCTTAGAAACGTCAAAAAAAATTATTTCATCCATGAC
66 CTAGAAGCGAATTTATACTATTTGCTCAGAAACGTC-AAAAAAATTATTTCATCCATGAC
* * *
42514503 CTACTGTAGCAAGAGCGCGTCCACGAGGGCGCGA-TTTCA-AATTTTCTTCTCAAATAGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAA-ATTCTTCTCAAATAGCATCCT
* *
42514566 GCTAGAAGCGATTTTATACTATTTGCTCAGAAAGGTCAAAAAAATTATTTC
65 GCTAGAAGCGAATTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTC
42514617 TTCCCGGACC
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
123 16 0.16
124 56 0.54
125 31 0.30
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
CTAGAAGCGAATTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCATCCATGAC
Found at i:42518226 original size:25 final size:25
Alignment explanation
Indices: 42518198--42518325 Score: 142
Period size: 25 Copynumber: 5.3 Consensus size: 25
42518188 TATTTTGATA
42518198 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
42518223 TTATTTGATGTAATAAAATAGAATT
1 TTATTTGATGTAATAAAATAGAAGT
* ** *
42518248 TTTTTTGA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
42518267 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
*
42518293 TTATTTGATGTAATAAAATAGAATT
1 TTATTTGATGTAATAAAATAGAAGT
*
42518318 TTTTTTGA
1 TTATTTGA
42518326 GTTATTTTGA
Statistics
Matches: 85, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
19 1 0.01
20 8 0.09
21 5 0.06
22 1 0.01
23 1 0.01
24 5 0.06
25 63 0.74
26 1 0.01
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:42518230 original size:45 final size:45
Alignment explanation
Indices: 42518143--42518230 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
42518133 ATATTTTGAA
* * *
42518143 TATTTTGATATTATTTTATGTAATAAAATATAAATTTTTTTGAGT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGAGT
*
42518188 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGA
42518231 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.52
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGAGT
Found at i:42518234 original size:70 final size:70
Alignment explanation
Indices: 42518153--42518353 Score: 375
Period size: 70 Copynumber: 2.9 Consensus size: 70
42518143 TATTTTGATA
* * *
42518153 TTATTTTATGTAATAAAATATAAATTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
1 TTATTTGATGTAATAAAATAGAATTTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
42518218 GAAGT
66 GAAGT
42518223 TTATTTGATGTAATAAAATAGAATTTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
1 TTATTTGATGTAATAAAATAGAATTTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
42518288 GAAGT
66 GAAGT
42518293 TTATTTGATGTAATAAAATAGAATTTTTTTTGAGTTATTTTGATATTATTTGATGTAATAA
1 TTATTTGATGTAATAAAATAGAATTTTTTTTGAGTTATTTTGATATTATTTGATGTAATAA
42518354 CATGAGCTTA
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 128 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (70 bp):
TTATTTGATGTAATAAAATAGAATTTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
GAAGT
Found at i:42520268 original size:13 final size:13
Alignment explanation
Indices: 42520250--42520275 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42520240 TTGGATCCGT
42520250 ACCAAAACAATCA
1 ACCAAAACAATCA
42520263 ACCAAAACAATCA
1 ACCAAAACAATCA
42520276 TGAAACACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:42521170 original size:43 final size:42
Alignment explanation
Indices: 42521087--42521226 Score: 115
Period size: 43 Copynumber: 3.3 Consensus size: 42
42521077 CGAAAAACTC
* * *
42521087 ATACAATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAA
1 ATACGATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAA
*
42521129 ATAACGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAT
1 AT-ACGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAA
* ** * **
42521172 ATATGATGTAAATGTCCCAGACATAGTCTTACACGTAAATCTCAA
1 ATACGATGCCACTGTCCCAGACAGGGTCTTACACG-AAA--TCAA
42521217 AT-CGATGCCA
1 ATACGATGCCA
42521227 ACATCTCAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 31 0.40
43 36 0.46
44 6 0.08
45 5 0.06
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
ATACGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAA
Found at i:42524770 original size:4 final size:4
Alignment explanation
Indices: 42524763--42524789 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
42524753 CATGCATATA
42524763 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
42524790 ATTGCATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:42526824 original size:32 final size:34
Alignment explanation
Indices: 42526761--42526824 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
42526751 TCTAATAATT
* *
42526761 TCACTATTATAAAACTATTTTCCTTAAAAGAATG
1 TCACTATTATAAAACCATTCTCCTTAAAAGAATG
42526795 TCAC-ATTATAAAACCATTCT-CTTAAAAGAA
1 TCACTATTATAAAACCATTCTCCTTAAAAGAA
42526825 AATCGAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 10 0.36
33 14 0.50
34 4 0.14
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (34 bp):
TCACTATTATAAAACCATTCTCCTTAAAAGAATG
Found at i:42527720 original size:22 final size:21
Alignment explanation
Indices: 42527693--42527811 Score: 80
Period size: 23 Copynumber: 5.3 Consensus size: 21
42527683 AAATTGTTGC
* *
42527693 ATTTGTTTTGATATTGTTCTTG
1 ATTTGTTCTGAAATTGTT-TTG
42527715 ATTTGTTCTGAAATTGTTTTG
1 ATTTGTTCTGAAATTGTTTTG
* *
42527736 A-TTGTCTGCTGGAAATTGGTATG
1 ATTTGT-T-CT-GAAATTGTTTTG
* *
42527759 ATTGGCTGCTGGAAATTGTTTTG
1 ATTTG-TTCT-GAAATTGTTTTG
*
42527782 A-TTGTCTGCTGGAAATTGTGTTG
1 ATTTGT-T-CT-GAAATTGTTTTG
42527805 ATTTGTT
1 ATTTGTT
42527812 TATGTTAGTC
Statistics
Matches: 78, Mismatches: 11, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
20 4 0.05
21 6 0.08
22 20 0.26
23 41 0.53
24 6 0.08
25 1 0.01
ACGTcount: A:0.18, C:0.07, G:0.25, T:0.50
Consensus pattern (21 bp):
ATTTGTTCTGAAATTGTTTTG
Found at i:42527752 original size:23 final size:23
Alignment explanation
Indices: 42527724--42527807 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
42527714 GATTTGTTCT
42527724 GAAATTGTTTTGATTGTCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
* * *
42527747 GAAATTGGTATGATTGGCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
42527770 GAAATTGTTTTGATTGTCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
*
42527793 GAAATTGTGTTGATT
1 GAAATTGTTTTGATT
42527808 TGTTTATGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.20, C:0.07, G:0.29, T:0.44
Consensus pattern (23 bp):
GAAATTGTTTTGATTGTCTGCTG
Found at i:42529672 original size:17 final size:17
Alignment explanation
Indices: 42529647--42529680 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
42529637 ATTATTTTAA
*
42529647 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
42529664 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
42529681 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:42529682 original size:15 final size:16
Alignment explanation
Indices: 42529647--42529685 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
42529637 ATTATTTTAA
*
42529647 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
42529664 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
42529679 ATTTAAT
1 ATTTAAT
42529686 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:42529689 original size:17 final size:18
Alignment explanation
Indices: 42529651--42529690 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
42529641 TTTTAAATTT
*
42529651 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
42529669 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
42529685 TATTAA
1 TATTAA
42529691 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:42529782 original size:59 final size:59
Alignment explanation
Indices: 42529719--42529902 Score: 164
Period size: 66 Copynumber: 3.1 Consensus size: 59
42529709 TATAGTATCA
* *
42529719 TATATTATGATTTTAGTAAATTTATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTTATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* * ** * *
42529778 TATA-TAT--TTTAATTAAA-ATATAT-TTAATATTAATTATTTCA-AATTATCTTTTATAGTAT
1 TATATTATGATTTAAGTAAATTTATATAAGAATATTAATTA-TTAAGAATT-T-TATTA-A--AT
* *
42529837 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTTATATAAGAATATTAATTATTAAGAATTTTATTAAAT
42529898 TATAT
1 TATAT
42529903 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 16, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
54 14 0.15
55 9 0.09
56 12 0.13
57 1 0.01
58 3 0.03
59 11 0.12
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.13
65 8 0.08
66 15 0.16
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (59 bp):
TATATTATGATTTAAGTAAATTTATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:42529794 original size:18 final size:17
Alignment explanation
Indices: 42529766--42529800 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42529756 ATTATTAAGA
*
42529766 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42529783 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42529801 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:42529849 original size:120 final size:120
Alignment explanation
Indices: 42529646--42529940 Score: 486
Period size: 120 Copynumber: 2.5 Consensus size: 120
42529636 AATTATTTTA
* * *
42529646 AATTTTATTAAATCATATA-TTTAATT-AAATCATATTTAATATTAATTATTTGAAATTTTCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAAT-ATATTTAATATTAATTATTTCAAATTATCTTT
* * *
42529709 TATAGTATCATATATTATGATTTTAGTAAATTTATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
42529765 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
42529830 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
42529885 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTCAAA
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAA
42529941 ATATGATTAA
Statistics
Matches: 165, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
119 18 0.11
120 143 0.87
121 4 0.02
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:42529925 original size:15 final size:15
Alignment explanation
Indices: 42529890--42529931 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
42529880 TTAAGAATTT
*
42529890 TATTAAATTAT-ATA
1 TATTTAATTATAATA
42529904 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
42529918 TATTTAATAATAAT
1 TATTTAATTATAAT
42529932 TATGTCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:42530035 original size:157 final size:157
Alignment explanation
Indices: 42529874--42530190 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 157
42529864 ATAAGAATAT
*
42529874 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTCA
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCA
* *
42529939 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
* *
42530004 TAATAATTTACGAAAACAAATTTTTGC
131 TAATAATTTACCAAAACAAATTTATGC
**
42530031 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCA
42530096 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
42530161 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
42530188 TAA
1 TAA
42530191 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 152 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCA
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:42530071 original size:18 final size:17
Alignment explanation
Indices: 42530043--42530077 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42530033 ATTATTAAGA
*
42530043 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42530060 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42530078 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:42530334 original size:16 final size:16
Alignment explanation
Indices: 42530313--42530348 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
42530303 GATTTGCTAT
42530313 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
42530329 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
42530345 TACA
1 TACA
42530349 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:42539252 original size:27 final size:27
Alignment explanation
Indices: 42539222--42539274 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
42539212 TGAGGGATTA
42539222 AATTGTAAAATTTGTAAAAATT-AGGGT
1 AATTGTAAAATTT-TAAAAATTGAGGGT
**
42539249 AATTGTGTAATTTTAAAAATTGAGGG
1 AATTGTAAAATTTTAAAAATTGAGGG
42539275 GTTATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.38
Consensus pattern (27 bp):
AATTGTAAAATTTTAAAAATTGAGGGT
Found at i:42539620 original size:25 final size:24
Alignment explanation
Indices: 42539586--42539708 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
42539576 TCGTTCTGTG
42539586 GCAAAGGATGAATTGACGGTAAAAT
1 GCAAAGGATGAATTGACGGT-AAAT
*
42539611 GCAAAGGATGAATTAACGGTAAAAT
1 GCAAAGGATGAATTGACGGT-AAAT
**
42539636 GCAAAGGATGAATTGACGGTCTAT
1 GCAAAGGATGAATTGACGGTAAAT
* *
42539660 GCAAATGATGAATTGACGGTATAT
1 GCAAAGGATGAATTGACGGTAAAT
* *
42539684 GCAAAGGATGAATTGATGGCAAAT
1 GCAAAGGATGAATTGACGGTAAAT
42539708 G
1 G
42539709 TACTCAAGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 45 0.51
25 43 0.49
ACGTcount: A:0.41, C:0.09, G:0.28, T:0.23
Consensus pattern (24 bp):
GCAAAGGATGAATTGACGGTAAAT
Found at i:42539669 original size:24 final size:25
Alignment explanation
Indices: 42539586--42539699 Score: 169
Period size: 25 Copynumber: 4.6 Consensus size: 25
42539576 TCGTTCTGTG
42539586 GCAAAGGATGAATTGACGGTAAAAT
1 GCAAAGGATGAATTGACGGTAAAAT
*
42539611 GCAAAGGATGAATTAACGGTAAAAT
1 GCAAAGGATGAATTGACGGTAAAAT
**
42539636 GCAAAGGATGAATTGACGGT-CTAT
1 GCAAAGGATGAATTGACGGTAAAAT
* *
42539660 GCAAATGATGAATTGACGGT-ATAT
1 GCAAAGGATGAATTGACGGTAAAAT
42539684 GCAAAGGATGAATTGA
1 GCAAAGGATGAATTGA
42539700 TGGCAAATGT
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 39 0.48
25 43 0.52
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.23
Consensus pattern (25 bp):
GCAAAGGATGAATTGACGGTAAAAT
Found at i:42543071 original size:2 final size:2
Alignment explanation
Indices: 42543066--42543099 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
42543056 ATATATATAT
42543066 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
42543100 CAAGAAGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:42546448 original size:18 final size:19
Alignment explanation
Indices: 42546418--42546455 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
42546408 TAATAATAAT
*
42546418 AATAATAATAAA-TAAATA
1 AATAATAAAAAATTAAATA
42546436 AATAATAAAAAATTAAATA
1 AATAATAAAAAATTAAATA
42546455 A
1 A
42546456 TAGCAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AATAATAAAAAATTAAATA
Found at i:42546452 original size:15 final size:15
Alignment explanation
Indices: 42546380--42546457 Score: 62
Period size: 15 Copynumber: 5.4 Consensus size: 15
42546370 ATAACCAAAT
*
42546380 ATAATAATATCAAT-A
1 ATAATAA-ATAAATAA
42546395 ATAATAAGAGT-AAT-A
1 ATAATAA-A-TAAATAA
42546410 ATAAT-AAT-AAT-A
1 ATAATAAATAAATAA
42546422 ATAATAAATAAATAA
1 ATAATAAATAAATAA
42546437 ATAATAAA-AAATTAA
1 ATAATAAATAAA-TAA
42546452 ATAATA
1 ATAATA
42546458 GCAAAATAAC
Statistics
Matches: 57, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
12 10 0.18
13 4 0.07
14 7 0.12
15 35 0.61
16 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (15 bp):
ATAATAAATAAATAA
Found at i:42546457 original size:3 final size:3
Alignment explanation
Indices: 42546380--42546443 Score: 67
Period size: 3 Copynumber: 20.3 Consensus size: 3
42546370 ATAACCAAAT
* *
42546380 ATA ATA AT- ATCA ATA ATA ATA AGA GTA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
42546425 ATAA ATAA ATAA ATA ATA A
1 AT-A AT-A AT-A ATA ATA A
42546444 AAAATTAAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
2 2 0.04
3 39 0.72
4 13 0.24
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:42546457 original size:18 final size:17
Alignment explanation
Indices: 42546415--42546457 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
42546405 TAATAATAAT
*
42546415 AATAATAATAATAAATA
1 AATAATAATAAAAAATA
42546432 AATAAATAATAAAAAATTA
1 AAT-AATAATAAAAAA-TA
42546451 AATAATA
1 AATAATA
42546458 GCAAAATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 15 0.65
19 5 0.22
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
AATAATAATAAAAAATA
Found at i:42556174 original size:33 final size:31
Alignment explanation
Indices: 42556100--42556175 Score: 79
Period size: 33 Copynumber: 2.5 Consensus size: 31
42556090 ATTTGAATGC
*
42556100 TTAATTAAAA--TTTTTAAATTTTTGTGAAA
1 TTAATTAAAATTTTTTTAAATTTTAGTGAAA
42556129 TTAA-TAAGAATTTTTTTAATATTTTAAGTG-AA
1 TTAATTAA-AATTTTTTTAA-ATTTT-AGTGAAA
42556161 TATAATTAAAATTTT
1 T-TAATTAAAATTTT
42556176 CAAAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
28 3 0.08
29 6 0.15
31 7 0.18
32 8 0.21
33 12 0.31
34 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (31 bp):
TTAATTAAAATTTTTTTAAATTTTAGTGAAA
Found at i:42557677 original size:20 final size:21
Alignment explanation
Indices: 42557652--42557692 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
42557642 CACCGGCAGA
*
42557652 AATTTTTGGAA-TTTCCACGT
1 AATTTTTGCAATTTTCCACGT
*
42557672 AATTTTTTCAATTTTCCACGT
1 AATTTTTGCAATTTTCCACGT
42557693 GGGCAAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.49
Consensus pattern (21 bp):
AATTTTTGCAATTTTCCACGT
Found at i:42560780 original size:17 final size:18
Alignment explanation
Indices: 42560739--42560773 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
42560729 TTATTATTAA
*
42560739 ATATATTTTAATTAAAAT
1 ATATAATTTAATTAAAAT
42560757 ATATAATTTAA-TAAAAT
1 ATATAATTTAATTAAAAT
42560774 TATTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAATTTAATTAAAAT
Found at i:42560857 original size:120 final size:118
Alignment explanation
Indices: 42560719--42561034 Score: 499
Period size: 120 Copynumber: 2.6 Consensus size: 118
42560709 TTAATCATAT
*
42560719 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTATTAATAAT
1 TTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT-TTAATAAT
* * *
42560784 CAATATTGTTATATGAATTTACTCAAATCATAATTTATGATACTATAAAATATAA
64 CAATATTATTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
42560839 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT-TTAATAAT
* *
42560904 CAATATTATTATATGAATTTCCTAAAATCATAATATATGATAGTATAAAATATAA
64 CAATATTATTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
42560959 TTTGAAATCATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTTAAATAAT
1 TTT-AAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTT-AATAAT
42561024 -AATAATTATTA
64 CAAT-ATTATTA
42561035 AATATAATTT
Statistics
Matches: 184, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
119 5 0.03
120 177 0.96
121 2 0.01
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (118 bp):
TTTAAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTTAATAATCA
ATATTATTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:42560880 original size:18 final size:17
Alignment explanation
Indices: 42560857--42560893 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
42560847 AATTATTATT
42560857 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
42560873 AAATATATGATTTAATA
1 AAATATATGATTTAATA
42560890 AAAT
1 AAAT
42560894 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:42560942 original size:61 final size:59
Alignment explanation
Indices: 42560754--42561034 Score: 183
Period size: 59 Copynumber: 4.7 Consensus size: 59
42560744 TTTTAATTAA
* *
42560754 AATATATAATTTAATAAAATTATTAATAATCAATATTGTTATATGAATTTACTCAAATCAT
1 AATATATGATTTAATAAAATTATTAATAATCAATATTATTATATGAATTT-CT-AAATCAT
* * * * * *
42560815 AATTTATGATACT-ATAAAATATAATTTAA-GAT-AATTATTATTAAAT-ATATTT-T-AATTAA
1 AATATATGAT-TTAATAAAAT-T-A-TTAATAATCAA-TATTATTATATGA-ATTTCTAAATCAT
*
42560874 AATATATGATTTAATAAAATTCTTAATAATCAATATTATTATATGAATTTCCTAAAATCAT
1 AATATATGATTTAATAAAATTATTAATAATCAATATTATTATATGAATTT-CT-AAATCAT
* * * * * *
42560935 AATATATGATAGT-ATAAAATATAATTTGA-AATCATTATTATTAAAT-ATATTT-T-AATTAA
1 AATATATGAT-TTAATAAAAT-T-A-TTAATAATCAATATTATTATATGA-ATTTCTAAATCAT
42560994 AATATATGATTTAATAAAATT-TTAAATAAT-AATAATTATTA
1 AATATATGATTTAATAAAATTATT-AATAATCAAT-ATTATTA
42561035 AATATAATTT
Statistics
Matches: 172, Mismatches: 25, Indels: 50
0.70 0.10 0.20
Matches are distributed among these distances:
55 2 0.01
56 7 0.04
57 26 0.15
58 7 0.04
59 42 0.24
61 38 0.22
62 8 0.05
63 35 0.20
64 7 0.04
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (59 bp):
AATATATGATTTAATAAAATTATTAATAATCAATATTATTATATGAATTTCTAAATCAT
Found at i:42560976 original size:63 final size:60
Alignment explanation
Indices: 42560781--42560977 Score: 165
Period size: 63 Copynumber: 3.2 Consensus size: 60
42560771 AATTATTAAT
* *
42560781 AATCAATATTGTTATATGAATTTACTCAAATCATAATTTATGATACTATAAAATATAATTTA
1 AATCAATATTATTATATGAATTT-CT-AAATCATAATATATGATACTATAAAATATAATTTA
* * * * * *
42560843 AGAT-AATTATTATTAAAT-ATATTT-T-AATTAAAATATATGAT-TTAATAAAAT-T-CTTAA
1 A-ATCAA-TATTATTATATGA-ATTTCTAAATCATAATATATGATACT-ATAAAATATAATTTA
*
42560900 TAATCAATATTATTATATGAATTTCCTAAAATCATAATATATGATAGTATAAAATATAATTTGA
1 -AATCAATATTATTATATGAATTT-CT-AAATCATAATATATGATACTATAAAATATAATTT-A
*
42560964 AATCATTATTATTA
1 AATCAATATTATTA
42560978 AATATATTTT
Statistics
Matches: 105, Mismatches: 15, Indels: 29
0.70 0.10 0.19
Matches are distributed among these distances:
57 19 0.18
58 6 0.06
59 21 0.20
61 22 0.21
62 6 0.06
63 30 0.29
64 1 0.01
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.43
Consensus pattern (60 bp):
AATCAATATTATTATATGAATTTCTAAATCATAATATATGATACTATAAAATATAATTTA
Found at i:42561015 original size:29 final size:29
Alignment explanation
Indices: 42560974--42561049 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 29
42560964 AATCATTATT
*
42560974 ATTAAAT-ATATTTTAATTAA-AATATATG
1 ATTAAATAAAATTTTAATTAATAATA-ATG
* * *
42561002 ATTTAATAAAATTTTAAATAATAATAATT
1 ATTAAATAAAATTTTAATTAATAATAATG
*
42561031 ATTAAATATAA-TTTAATTA
1 ATTAAATAAAATTTTAATTA
42561050 TATGAATTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 13 0.33
29 22 0.56
30 4 0.10
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (29 bp):
ATTAAATAAAATTTTAATTAATAATAATG
Found at i:42561047 original size:18 final size:18
Alignment explanation
Indices: 42560971--42561096 Score: 56
Period size: 16 Copynumber: 7.1 Consensus size: 18
42560961 TGAAATCATT
*
42560971 ATTATTAAATATATTTTA
1 ATTATTAAATATAATTTA
42560989 ATTA--AAATATATGATTTA
1 ATTATTAAATATA--ATTTA
*
42561007 ATAAAATTTTAAATAATAA--TA
1 AT----TATTAAAT-ATAATTTA
42561028 ATTATTAAATATAATTTA
1 ATTATTAAATATAATTTA
* *
42561046 ATTA-T--AT-GAATTTGT
1 ATTATTAAATATAATTT-A
* *
42561061 ATAATTTAATATAA-TT-
1 ATTATTAAATATAATTTA
42561077 ATTATTAAATATAATTTA
1 ATTATTAAATATAATTTA
42561095 AT
1 AT
42561097 AATAATGTAT
Statistics
Matches: 81, Mismatches: 9, Indels: 36
0.64 0.07 0.29
Matches are distributed among these distances:
14 5 0.06
15 5 0.06
16 24 0.30
17 10 0.12
18 22 0.27
19 2 0.02
21 4 0.05
22 1 0.01
23 1 0.01
24 4 0.05
25 3 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
ATTATTAAATATAATTTA
Found at i:42561135 original size:91 final size:91
Alignment explanation
Indices: 42561047--42561694 Score: 1156
Period size: 91 Copynumber: 7.1 Consensus size: 91
42561037 TATAATTTAA
* * * * * *
42561047 TTATATGAATTTGTATAATTTAATATAATTATTATTAAATATAATTTAATAATAATGTATAACTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
*
42561112 CATCAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
42561138 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
42561203 CATAAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
42561229 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
42561294 CATAAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
* *
42561320 TTATATGAATTTATATAATTTAAAATAAGTAATATTAAATATAACTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
42561385 CATAAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
42561411 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
*
42561476 CATAAAATTCTAGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
* *
42561502 TTATATGAATTTATATAATTTAAAACAATGAATATTAAATATAATTTAATAATGATATA-AATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
42561566 CATAAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
42561592 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
* *
42561657 -ATAAAATTCTTAATAATAAATATTC
66 CATAAAATTCTTGATAATAAATTTTC
42561682 TTATATGAATTTA
1 TTATATGAATTTA
42561695 CTAAAATCAT
Statistics
Matches: 537, Mismatches: 19, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
90 123 0.23
91 414 0.77
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
CATAAAATTCTTGATAATAAATTTTC
Found at i:42565293 original size:25 final size:25
Alignment explanation
Indices: 42565242--42565295 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
42565232 GTTACTAGAG
* * *
42565242 GTTGTTAGCTATTTTCTTGTTTCTA
1 GTTGTTAGCTACTTCCTTATTTCTA
42565267 GTTGTTAGCTACTTCCTTA-TTCTTA
1 GTTGTTAGCTACTTCCTTATTTC-TA
42565292 GTTG
1 GTTG
42565296 AGTAGTTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.13, C:0.15, G:0.17, T:0.56
Consensus pattern (25 bp):
GTTGTTAGCTACTTCCTTATTTCTA
Found at i:42573563 original size:31 final size:31
Alignment explanation
Indices: 42573528--42573594 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
42573518 AAAAACACTT
42573528 AATAGGCCAATAACTTAAATAAAAACTTTGG
1 AATAGGCCAATAACTTAAATAAAAACTTTGG
*** * *
42573559 AATAGTTGAATGACTTTAATAAAAACTTTGG
1 AATAGGCCAATAACTTAAATAAAAACTTTGG
42573590 AATAG
1 AATAG
42573595 CTCAATGACA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.30
Consensus pattern (31 bp):
AATAGGCCAATAACTTAAATAAAAACTTTGG
Found at i:42573602 original size:31 final size:31
Alignment explanation
Indices: 42573535--42573603 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
42573525 CTTAATAGGC
* *
42573535 CAATAACTTAAATAAAAACTTTGGAATAGTT
1 CAATGACTTAAATAAAAACTTTGGAATAGCT
* *
42573566 GAATGACTTTAATAAAAACTTTGGAATAGCT
1 CAATGACTTAAATAAAAACTTTGGAATAGCT
42573597 CAATGAC
1 CAATGAC
42573604 AAAATTATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTGGAATAGCT
Found at i:42579341 original size:21 final size:21
Alignment explanation
Indices: 42579315--42579355 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
42579305 AGACGAGCAA
* *
42579315 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
42579336 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
42579356 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:42584077 original size:60 final size:60
Alignment explanation
Indices: 42584004--42584118 Score: 212
Period size: 60 Copynumber: 1.9 Consensus size: 60
42583994 AAGCTTGATT
* *
42584004 TTTAAGTCTATAAAATGGAAAGACATAAACAAACAAAGTAAGCTTTTATAGCTTACGATC
1 TTTAAGTCTATAAAACGAAAAGACATAAACAAACAAAGTAAGCTTTTATAGCTTACGATC
42584064 TTTAAGTCTATAAAACGAAAAGACATAAACAAACAAAGTAAGCTTTTATAGCTTA
1 TTTAAGTCTATAAAACGAAAAGACATAAACAAACAAAGTAAGCTTTTATAGCTTA
42584119 GTAAGTCTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (60 bp):
TTTAAGTCTATAAAACGAAAAGACATAAACAAACAAAGTAAGCTTTTATAGCTTACGATC
Found at i:42584826 original size:42 final size:42
Alignment explanation
Indices: 42584747--42584919 Score: 224
Period size: 42 Copynumber: 4.1 Consensus size: 42
42584737 GCACTTAGCT
* * * *
42584747 TGCTAGACATATAGTCTGA-AATGTTTCACCGGCATTAAGCC
1 TGCTAGACGTAAAGTCTGATATTGTTTCACCGGAATTAAGCC
*
42584788 TGCTAGACGTAAAGTTTGATATTGTTTCACCGGAATTAAGCC
1 TGCTAGACGTAAAGTCTGATATTGTTTCACCGGAATTAAGCC
** * * *
42584830 TGCTAGACGTAAAGTCAAAAATTATTTCACCGGCATTAAGCC
1 TGCTAGACGTAAAGTCTGATATTGTTTCACCGGAATTAAGCC
*
42584872 TGCTAGACGTAAAGTCTGATATTGTTTCACTGGCAA-TAAGCC
1 TGCTAGACGTAAAGTCTGATATTGTTTCACCGG-AATTAAGCC
42584914 TGCTAG
1 TGCTAG
42584920 GCGGTAAGCC
Statistics
Matches: 113, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
41 16 0.14
42 96 0.85
43 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (42 bp):
TGCTAGACGTAAAGTCTGATATTGTTTCACCGGAATTAAGCC
Found at i:42585880 original size:4 final size:4
Alignment explanation
Indices: 42585871--42585940 Score: 140
Period size: 4 Copynumber: 17.5 Consensus size: 4
42585861 AATACAATAG
42585871 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
42585919 ACAT ACAT ACAT ACAT ACAT AC
1 ACAT ACAT ACAT ACAT ACAT AC
42585941 TAATTTAATA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 66 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:42587028 original size:4 final size:4
Alignment explanation
Indices: 42587012--42587041 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
42587002 GGCTGTTACA
*
42587012 TAAC TAGC TAAC TAAC TAAC TAAC TAAC TA
1 TAAC TAAC TAAC TAAC TAAC TAAC TAAC TA
42587042 TTAGATACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.27
Consensus pattern (4 bp):
TAAC
Found at i:42588206 original size:32 final size:32
Alignment explanation
Indices: 42588165--42588233 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
42588155 ATTGTAACTT
* * * *
42588165 TTCTATTCTCATTTTCATCAATTGGTTGTTTC
1 TTCTCTTCTCATCTTCATCAATTGATTGCTTC
* *
42588197 TTCTCTTCTCGTCTTCATCAGTTGATTGCTTC
1 TTCTCTTCTCATCTTCATCAATTGATTGCTTC
42588229 TTCTC
1 TTCTC
42588234 CATCTGTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.12, C:0.25, G:0.10, T:0.54
Consensus pattern (32 bp):
TTCTCTTCTCATCTTCATCAATTGATTGCTTC
Found at i:42591694 original size:84 final size:84
Alignment explanation
Indices: 42591560--42591734 Score: 289
Period size: 84 Copynumber: 2.1 Consensus size: 84
42591550 TGGATTTACT
* * *
42591560 GGCGTTTTTATGTATGCGCCGCTATTGGTTTGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCAC
1 GGCGTTTCTATGTATGCGCCGCTATTGGATTGGGGGGATAGTGGCGTGTTTTGGTCAATCGCCAC
42591625 TAATGTTAAGGTATTTAGC
66 TAATGTTAAGGTATTTAGC
*
42591644 GGCGTTTCTAT-TATAGCGCCGCTATTTGATTGGGGGGATAGTGGCGTGTTTTGGTCAATCGCCA
1 GGCGTTTCTATGTAT-GCGCCGCTATTGGATTGGGGGGATAGTGGCGTGTTTTGGTCAATCGCCA
*
42591708 CTAATGTTAATGTATTTAGC
65 CTAATGTTAAGGTATTTAGC
42591728 GGCGTTT
1 GGCGTTT
42591735 GGTTTTAAAG
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
83 3 0.04
84 82 0.96
ACGTcount: A:0.17, C:0.15, G:0.30, T:0.38
Consensus pattern (84 bp):
GGCGTTTCTATGTATGCGCCGCTATTGGATTGGGGGGATAGTGGCGTGTTTTGGTCAATCGCCAC
TAATGTTAAGGTATTTAGC
Found at i:42592323 original size:114 final size:114
Alignment explanation
Indices: 42592202--42592444 Score: 486
Period size: 114 Copynumber: 2.1 Consensus size: 114
42592192 TATAGAACTA
42592202 TTAATTTAAATTCAAATTGTGGTTATTGTGGATATGAATATCCAAAAATGGGTTACAATTTTAAA
1 TTAATTTAAATTCAAATTGTGGTTATTGTGGATATGAATATCCAAAAATGGGTTACAATTTTAAA
42592267 GATATGTTTTTTATTAGGATTAAAAAATTTGATGGATATATAATATTAT
66 GATATGTTTTTTATTAGGATTAAAAAATTTGATGGATATATAATATTAT
42592316 TTAATTTAAATTCAAATTGTGGTTATTGTGGATATGAATATCCAAAAATGGGTTACAATTTTAAA
1 TTAATTTAAATTCAAATTGTGGTTATTGTGGATATGAATATCCAAAAATGGGTTACAATTTTAAA
42592381 GATATGTTTTTTATTAGGATTAAAAAATTTGATGGATATATAATATTAT
66 GATATGTTTTTTATTAGGATTAAAAAATTTGATGGATATATAATATTAT
42592430 TTAATTTAAATTCAA
1 TTAATTTAAATTCAA
42592445 GGTTGCAATA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 129 1.00
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (114 bp):
TTAATTTAAATTCAAATTGTGGTTATTGTGGATATGAATATCCAAAAATGGGTTACAATTTTAAA
GATATGTTTTTTATTAGGATTAAAAAATTTGATGGATATATAATATTAT
Found at i:42592911 original size:28 final size:28
Alignment explanation
Indices: 42592879--42593015 Score: 113
Period size: 28 Copynumber: 4.9 Consensus size: 28
42592869 GTATGGATTA
42592879 GGGTTTGGGATTAAGGTTTATGGGTTTG
1 GGGTTTGGGATTAAGGTTTATGGGTTTG
** * *
42592907 GGGTTACGG-TCT-AGGTTTAGGGGTTAG
1 GGGTTTGGGAT-TAAGGTTTATGGGTTTG
* * *
42592934 GGGTTAGGGGTTAAGGATT-TGGGTTTTG
1 GGGTTTGGGATTAAGGTTTATGGG-TTTG
* *
42592962 GGGTTTGGGGTT-TGTGATTTA-GGGTTTG
1 GGGTTTGGGATTAAG-G-TTTATGGGTTTG
*
42592990 GGGTTTGGGATTAAAGTTTATGGGTT
1 GGGTTTGGGATTAAGGTTTATGGGTT
42593016 AAGGACTTAT
Statistics
Matches: 86, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
27 31 0.36
28 50 0.58
29 5 0.06
ACGTcount: A:0.14, C:0.01, G:0.44, T:0.41
Consensus pattern (28 bp):
GGGTTTGGGATTAAGGTTTATGGGTTTG
Found at i:42592975 original size:21 final size:21
Alignment explanation
Indices: 42592951--42593001 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
42592941 GGGTTAAGGA
* *
42592951 TTTGGGTTTTGGGGTTTGGGG
1 TTTGGGATTTAGGGTTTGGGG
*
42592972 TTTGTGATTTAGGGTTTGGGG
1 TTTGGGATTTAGGGTTTGGGG
42592993 TTTGGGATT
1 TTTGGGATT
42593002 AAAGTTTATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.06, C:0.00, G:0.45, T:0.49
Consensus pattern (21 bp):
TTTGGGATTTAGGGTTTGGGG
Found at i:42592996 original size:7 final size:7
Alignment explanation
Indices: 42592920--42592998 Score: 68
Period size: 7 Copynumber: 11.1 Consensus size: 7
42592910 TTACGGTCTA
42592920 GGTTTAGG
1 GGTTT-GG
*
42592928 GGTTAGG
1 GGTTTGG
*
42592935 GGTTAGG
1 GGTTTGG
**
42592942 GGTTAAG
1 GGTTTGG
*
42592949 GATTTGG
1 GGTTTGG
*
42592956 GTTTTGG
1 GGTTTGG
42592963 GGTTTGG
1 GGTTTGG
*
42592970 GGTTTGT
1 GGTTTGG
* *
42592977 GATTTAG
1 GGTTTGG
42592984 GGTTTGG
1 GGTTTGG
42592991 GGTTTGG
1 GGTTTGG
42592998 G
1 G
42592999 ATTAAAGTTT
Statistics
Matches: 58, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
7 54 0.93
8 4 0.07
ACGTcount: A:0.10, C:0.00, G:0.49, T:0.41
Consensus pattern (7 bp):
GGTTTGG
Found at i:42593892 original size:23 final size:24
Alignment explanation
Indices: 42593866--42593922 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
42593856 CACTTAGCCG
42593866 AAATTCCCCCCAAATTAT-CCCCA
1 AAATTCCCCCCAAATTATCCCCCA
* * *
42593889 AAATTCCCCCCGATTTTTCCCCCA
1 AAATTCCCCCCAAATTATCCCCCA
*
42593913 AAAATCCCCC
1 AAATTCCCCC
42593923 AATTCTAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 15 0.52
24 14 0.48
ACGTcount: A:0.30, C:0.46, G:0.02, T:0.23
Consensus pattern (24 bp):
AAATTCCCCCCAAATTATCCCCCA
Found at i:42594410 original size:12 final size:12
Alignment explanation
Indices: 42594395--42594434 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
42594385 TGTAATACTG
42594395 TTTGTTCATAAT
1 TTTGTTCATAAT
42594407 TTTGTT-ACTAAT
1 TTTGTTCA-TAAT
*
42594419 TTTGTTCATAAG
1 TTTGTTCATAAT
42594431 TTTG
1 TTTG
42594435 AAACTATTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.23, C:0.07, G:0.12, T:0.57
Consensus pattern (12 bp):
TTTGTTCATAAT
Found at i:42594440 original size:24 final size:24
Alignment explanation
Indices: 42594395--42594440 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
42594385 TGTAATACTG
* **
42594395 TTTGTTCATAATTTTGTTACTAAT
1 TTTGTTCATAAGTTTGAAACTAAT
42594419 TTTGTTCATAAGTTTGAAACTA
1 TTTGTTCATAAGTTTGAAACTA
42594441 TTTGTATTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.52
Consensus pattern (24 bp):
TTTGTTCATAAGTTTGAAACTAAT
Found at i:42594723 original size:18 final size:18
Alignment explanation
Indices: 42594700--42594737 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
42594690 GCAATTCGTA
42594700 TAGTTTATATCCTGTTTG
1 TAGTTTATATCCTGTTTG
42594718 TAGTTTATATCCTGTTTG
1 TAGTTTATATCCTGTTTG
42594736 TA
1 TA
42594738 TCCTATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.11, G:0.16, T:0.55
Consensus pattern (18 bp):
TAGTTTATATCCTGTTTG
Found at i:42595625 original size:70 final size:70
Alignment explanation
Indices: 42595533--42595904 Score: 642
Period size: 70 Copynumber: 5.3 Consensus size: 70
42595523 TTCTAGAAAT
* * * *
42595533 TTTTA-AAACTAATTATACATGTTATTTTTCTAAATATTAACATATATATTTTCAGTAATAAATT
1 TTTTAGAAA-TAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATT
42595597 TTATAA
65 TTATAA
*
42595603 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
*
42595667 TGTAA
66 TATAA
42595672 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
42595737 TATAA
66 TATAA
42595742 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
42595807 TATAA
66 TATAA
*
42595812 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATGAACATCTATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
42595876 TATAA
66 TATAA
*
42595881 TTTTAGAAAGAATTGTAAATGTTA
1 TTTTAGAAATAATTGTAAATGTTA
42595905 CATAATTCAA
Statistics
Matches: 292, Mismatches: 8, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
69 134 0.46
70 155 0.53
71 3 0.01
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (70 bp):
TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
TATAA
Found at i:42595629 original size:24 final size:23
Alignment explanation
Indices: 42595602--42595699 Score: 55
Period size: 24 Copynumber: 4.2 Consensus size: 23
42595592 AAATTTTATA
42595602 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
** *
42595626 ATTTTCTAAAT-A-TTAACATATAT
1 ATTTTAGAAATAATTTAA-ATGT-T
*
42595649 ATTTTCA-ATAATAAATTT---TGTA
1 ATTTT-AGA-AAT-AATTTAAATGTT
42595671 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
42595695 ATTTT
1 ATTTT
42595700 TCTAAATATG
Statistics
Matches: 55, Mismatches: 7, Indels: 24
0.64 0.08 0.28
Matches are distributed among these distances:
20 4 0.07
21 8 0.15
22 10 0.18
23 10 0.18
24 20 0.36
26 1 0.02
27 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (23 bp):
ATTTTAGAAATAATTTAAATGTT
Found at i:42595705 original size:139 final size:140
Alignment explanation
Indices: 42595533--42595904 Score: 642
Period size: 139 Copynumber: 2.7 Consensus size: 140
42595523 TTCTAGAAAT
* * * *
42595533 TTTTA-AAACTAATTATACATGTTATTTTTCTAAATATTAACATATATATTTTCAGTAATAAATT
1 TTTTAGAAA-TAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATT
*
42595597 TTATAATTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATATATATTTTCAATAAT
65 TTATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAAT
*
42595661 AAATTTTGTAA
130 AAATTTTATAA
42595672 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
42595737 TATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATA
66 TATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATA
42595802 AATTTTATAA
131 AATTTTATAA
*
42595812 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATGAACATCTATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
*
42595876 TATAATTTTAGAAAGAATTGTAAATGTTA
66 TATAATTTTAGAAATAATTGTAAATGTTA
42595905 CATAATTCAA
Statistics
Matches: 223, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
139 153 0.69
140 70 0.31
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (140 bp):
TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
TATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATA
AATTTTATAA
Found at i:42595721 original size:24 final size:24
Alignment explanation
Indices: 42595694--42595793 Score: 61
Period size: 24 Copynumber: 4.2 Consensus size: 24
42595684 TTGTAAATGT
42595694 TATTTTTCTAAAT-ATGAACATATA
1 TATTTTTCTAAATAATGAA-ATATA
*
42595718 TA-TTTTC--AATAAT-AAATTTTA
1 TATTTTTCTAAATAATGAAA-TATA
* ** *
42595739 TAATTTTAGAAATAATTGTAAATGT-
1 TATTTTTCTAAATAA-TG-AAATATA
42595764 TATTTTTCTAAAT-ATGAACATATA
1 TATTTTTCTAAATAATGAA-ATATA
42595788 TATTTT
1 TATTTT
42595794 CAATAATAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
20 1 0.02
21 10 0.17
22 8 0.14
23 10 0.17
24 14 0.24
25 11 0.19
26 2 0.03
27 3 0.05
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (24 bp):
TATTTTTCTAAATAATGAAATATA
Found at i:42595801 original size:24 final size:23
Alignment explanation
Indices: 42595704--42595870 Score: 57
Period size: 24 Copynumber: 7.2 Consensus size: 23
42595694 TATTTTTCTA
42595704 AATATGAACATATATATTTTCAAT
1 AATATGAA-ATATATATTTTCAAT
* * *
42595728 AATA--AATTTTATAATTTTAGAAAT
1 AATATGAAATATAT-ATTTT--CAAT
* *
42595752 AAT-TGTAAATGT-TATTTTTCTA-
1 AATATG-AAATATATA-TTTTCAAT
42595774 AATATGAACATATATATTTTCAAT
1 AATATGAA-ATATATATTTTCAAT
* * *
42595798 AATA--AATTTTATAATTTTAGAAAT
1 AATATGAAATATAT-ATTTT--CAAT
* *
42595822 AAT-TGTAAATGT-TATTTTCTA-
1 AATATG-AAATATATATTTTCAAT
*
42595843 AATATGAACATCTATATTTTCAAT
1 AATATGAA-ATATATATTTTCAAT
42595867 AATA
1 AATA
42595871 AATTTTATAA
Statistics
Matches: 104, Mismatches: 18, Indels: 42
0.63 0.11 0.26
Matches are distributed among these distances:
21 13 0.12
22 25 0.24
23 20 0.19
24 32 0.31
25 6 0.06
26 8 0.08
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (23 bp):
AATATGAAATATATATTTTCAAT
Found at i:42596038 original size:19 final size:19
Alignment explanation
Indices: 42596014--42596050 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
42596004 ATATAAACTT
42596014 ACATAATACATAACTTATG
1 ACATAATACATAACTTATG
42596033 ACATAATACATAACTTAT
1 ACATAATACATAACTTAT
42596051 ATATAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.16, G:0.03, T:0.32
Consensus pattern (19 bp):
ACATAATACATAACTTATG
Found at i:42596048 original size:47 final size:47
Alignment explanation
Indices: 42595997--42596087 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
42595987 ATTATATAAC
42595997 AACTTATATATAAACTTACATAATACATAACTTATGACATAATACAT
1 AACTTATATATAAACTTACATAATACATAACTTATGACATAATACAT
*
42596044 AACTTATATATAAACTTACATAATACATAACTTATTACATAATA
1 AACTTATATATAAACTTACATAATACATAACTTATGACATAATA
42596088 AGTTACGTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.35
Consensus pattern (47 bp):
AACTTATATATAAACTTACATAATACATAACTTATGACATAATACAT
Found at i:42596202 original size:16 final size:16
Alignment explanation
Indices: 42596179--42596232 Score: 81
Period size: 16 Copynumber: 3.3 Consensus size: 16
42596169 GTCGGACTTG
*
42596179 CATAACTTATATAATA
1 CATAACTTACATAATA
*
42596195 CTTAACTTACATAATA
1 CATAACTTACATAATA
42596211 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
42596228 CATAA
1 CATAA
42596233 TAAGTTACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
16 28 0.82
17 6 0.18
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:42596318 original size:9 final size:9
Alignment explanation
Indices: 42596300--42596376 Score: 69
Period size: 9 Copynumber: 9.3 Consensus size: 9
42596290 AACTTGTCGG
*
42596300 ACTTGCATA
1 ACTTACATA
*
42596309 ACTTATATA
1 ACTTACATA
*
42596318 A--TACTTA
1 ACTTACATA
42596325 ACTTACATA
1 ACTTACATA
42596334 ACTTACATA
1 ACTTACATA
42596343 A--TACATA
1 ACTTACATA
*
42596350 ACTTACGT-
1 ACTTACATA
42596358 A--TACATA
1 ACTTACATA
42596365 ACTTACATA
1 ACTTACATA
42596374 ACT
1 ACT
42596377 GATATATACT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
6 4 0.07
7 13 0.24
8 1 0.02
9 36 0.67
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.35
Consensus pattern (9 bp):
ACTTACATA
Found at i:42596334 original size:25 final size:25
Alignment explanation
Indices: 42596300--42596355 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
42596290 AACTTGTCGG
* * *
42596300 ACTTGCATAACTTATATAATACTTA
1 ACTTACATAACTTACATAATACATA
42596325 ACTTACATAACTTACATAATACATA
1 ACTTACATAACTTACATAATACATA
42596350 ACTTAC
1 ACTTAC
42596356 GTATACATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.36
Consensus pattern (25 bp):
ACTTACATAACTTACATAATACATA
Found at i:42596363 original size:15 final size:16
Alignment explanation
Indices: 42596328--42596374 Score: 78
Period size: 15 Copynumber: 3.0 Consensus size: 16
42596318 ATACTTAACT
42596328 TACATAACTTACATAA
1 TACATAACTTACATAA
*
42596344 TACATAACTTACGT-A
1 TACATAACTTACATAA
42596359 TACATAACTTACATAA
1 TACATAACTTACATAA
42596375 CTGATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 14 0.50
16 14 0.50
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:42604177 original size:111 final size:111
Alignment explanation
Indices: 42603983--42604203 Score: 424
Period size: 111 Copynumber: 2.0 Consensus size: 111
42603973 AATAATATTT
42603983 TTACTACTGTATTATAGGAACTGTCGTCCGGTCAGAAAGTTGGACGCCTTCAACTTTTTGACATT
1 TTACTACTGTATTATAGGAACTGTCGTCCGGTCAGAAAGTTGGACGCCTTCAACTTTTTGACATT
42604048 ACACATAGGAAGAAAGATGGGAACCCTATGACTCCTGAAGCTGCAG
66 ACACATAGGAAGAAAGATGGGAACCCTATGACTCCTGAAGCTGCAG
42604094 TTACTACTGTATTATAGGAACTGTCGTCCGGTCAGAAAGTTGGACGCCTTCAACTTTTTGACATT
1 TTACTACTGTATTATAGGAACTGTCGTCCGGTCAGAAAGTTGGACGCCTTCAACTTTTTGACATT
* *
42604159 ACACATAGGAAGAAAGATGTGAACTCTATGACTCCTGAAGCTGCA
66 ACACATAGGAAGAAAGATGGGAACCCTATGACTCCTGAAGCTGCA
42604204 AAAATTCTGG
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 108 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (111 bp):
TTACTACTGTATTATAGGAACTGTCGTCCGGTCAGAAAGTTGGACGCCTTCAACTTTTTGACATT
ACACATAGGAAGAAAGATGGGAACCCTATGACTCCTGAAGCTGCAG
Found at i:42604875 original size:19 final size:18
Alignment explanation
Indices: 42604842--42604887 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
42604832 GACTATCGTG
*
42604842 TAACTTTTTTTATCATTT
1 TAACTTTTATTATCATTT
42604860 TAACTTTATATTATCATTT
1 TAACTTT-TATTATCATTT
*
42604879 TACCTTTTA
1 TAACTTTTA
42604888 ACATATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (18 bp):
TAACTTTTATTATCATTT
Found at i:42605212 original size:44 final size:45
Alignment explanation
Indices: 42605115--42605216 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 45
42605105 TTAATGCATT
* * * *
42605115 TAGCGGCGTTT-TTATGAAAAGCGTCGCTAAAAGTCAAGTTCTTT
1 TAGCGGCGTTTGTGATGAAAAGCGTCGCTAAAAGGCAAGGTCTTC
* * **
42605159 TAGCCGCGTTTGTGA-GAAAATCGTCGCTAAAAGGGTAGGTCTTC
1 TAGCGGCGTTTGTGATGAAAAGCGTCGCTAAAAGGCAAGGTCTTC
42605203 TAGCGGCGTTTGTG
1 TAGCGGCGTTTGTG
42605217 CCTAAAGCGC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
44 46 0.96
45 2 0.04
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (45 bp):
TAGCGGCGTTTGTGATGAAAAGCGTCGCTAAAAGGCAAGGTCTTC
Found at i:42605338 original size:43 final size:42
Alignment explanation
Indices: 42605113--42605447 Score: 221
Period size: 43 Copynumber: 7.8 Consensus size: 42
42605103 GGTTAATGCA
* * * *
42605113 TTTAGCGGCGTTTTTATGAAAAGCGTCGCTAAAAGTCAAGTTCT
1 TTTAGCGGCGTTTGTA-GTAAAGCGCCGCTAAAAGTCAAGGT-T
* * * * ***
42605157 TTTAGCCGCGTTTGTGAGAAAATCGTCGCTAAAAGGGTAGGTCT
1 TTTAGCGGCGTTTGT-AGTAAAGCGCCGCTAAAAGTCAAGGT-T
* * ** *
42605201 TCTAGCGGCGTTTGT-GCCTAAAGCGCCGCTAAAGGTCAACATA
1 TTTAGCGGCGTTTGTAG--TAAAGCGCCGCTAAAAGTCAAGGTT
* * * * * *
42605244 TCTAGTGGCGTTTGTAAATAAAGCGCCGCT-ATAGGCTAATGTAT
1 TTTAGCGGCGTTTGT-AGTAAAGCGCCGCTAAAAGTC-AAGGT-T
*
42605288 TTT-GCGGCGTTTGTAGTGAAAGCGCCGCTAAAAGTCAGGGTT
1 TTTAGCGGCGTTTGTAGT-AAAGCGCCGCTAAAAGTCAAGGTT
* * *
42605330 TTTAGCGGCGTTTGTTGTTTAAGCGCCGCTAAAGGTCAAGGTT
1 TTTAGCGGCGTTTGTAG-TAAAGCGCCGCTAAAAGTCAAGGTT
* * * *
42605373 TATAGTGGCGTTTGTAGTAAAAGCGCCGCT-AAAGCTCAAGCTC
1 TTTAGCGGCGTTTGTAGT-AAAGCGCCGCTAAAAG-TCAAGGTT
* *
42605416 TTTAGCGGCGTTTAG-ATTAAAGCACCGCTAAA
1 TTTAGCGGCGTTT-GTAGTAAAGCGCCGCTAAA
42605448 GATAATAACC
Statistics
Matches: 227, Mismatches: 49, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
42 24 0.11
43 131 0.58
44 71 0.31
45 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTAGTAAAGCGCCGCTAAAAGTCAAGGTT
Found at i:42605996 original size:16 final size:16
Alignment explanation
Indices: 42605965--42605994 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
42605955 TTTAAAATAT
42605965 ATATTTATATTATTTA
1 ATATTTATATTATTTA
42605981 ATATTTA-ATTATTT
1 ATATTTATATTATTT
42605995 TATTTATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATATTTATATTATTTA
Found at i:42609519 original size:9 final size:9
Alignment explanation
Indices: 42609505--42609580 Score: 91
Period size: 9 Copynumber: 8.4 Consensus size: 9
42609495 GTAGTTATTC
42609505 AATTCGGTT
1 AATTCGGTT
42609514 AATTCGGTT
1 AATTCGGTT
* *
42609523 AATTTGATT
1 AATTCGGTT
* *
42609532 AATTTGGCT
1 AATTCGGTT
42609541 AATTCAGG-T
1 AATTC-GGTT
*
42609550 AATTAGGTT
1 AATTCGGTT
42609559 AATTCGGTT
1 AATTCGGTT
42609568 AATTCGGTT
1 AATTCGGTT
42609577 AATT
1 AATT
42609581 TTTAACCAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
8 2 0.03
9 54 0.93
10 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:42611493 original size:39 final size:39
Alignment explanation
Indices: 42611450--42611530 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
42611440 ATATAGTTTG
*
42611450 GTTTTGGTATAGTATTCACCTTATTGATTTTTGTGACAT
1 GTTTTGGTATAGTAGTCACCTTATTGATTTTTGTGACAT
*
42611489 GTTTTGGTATAGTAGTCACTTTATTGATTTTTGTGACAT
1 GTTTTGGTATAGTAGTCACCTTATTGATTTTTGTGACAT
42611528 GTT
1 GTT
42611531 ATGTTAGCCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.09, G:0.20, T:0.52
Consensus pattern (39 bp):
GTTTTGGTATAGTAGTCACCTTATTGATTTTTGTGACAT
Found at i:42617865 original size:25 final size:25
Alignment explanation
Indices: 42617763--42617882 Score: 84
Period size: 25 Copynumber: 4.9 Consensus size: 25
42617753 TGGATTTTCG
* * **
42617763 GAGCTACCTGCTAT-TGGCTCGCAT
1 GAGCTTCCTGTTATATGGCTCATAT
* * * *
42617787 GAGCTCCCTG-AATAGGGCTCTTAT
1 GAGCTTCCTGTTATATGGCTCATAT
* * * *
42617811 GAGCTTCCTATTATACAGCCTGA-AT
1 GAGCTTCCTGTTATA-TGGCTCATAT
*
42617836 AAGCTTCCTGTTATATGGCTCATAT
1 GAGCTTCCTGTTATATGGCTCATAT
*
42617861 GAGCTTCTTGTTATATGGCTCA
1 GAGCTTCCTGTTATATGGCTCA
42617883 AGAGAGGGCT
Statistics
Matches: 73, Mismatches: 19, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
23 2 0.03
24 28 0.38
25 40 0.55
26 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGCTCATAT
Found at i:42619937 original size:83 final size:82
Alignment explanation
Indices: 42619814--42619978 Score: 276
Period size: 83 Copynumber: 2.0 Consensus size: 82
42619804 GAAATGTCTA
* * *
42619814 TTCGGAGAGTTGATTGATGAAACGACAAGACTACCGTATATTGTGATAGTCAAAGTGTCATACAT
1 TTCGGAGAGCTAATTGATGAAACGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACAT
*
42619879 CTTACGAAAGTACAAAG
66 CTCACGAAAGTACAAAG
*
42619896 TTCGGAGAGCTAATTGATAGAAATGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACA
1 TTCGGAGAGCTAATTGAT-GAAACGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACA
42619961 TCTCACGAAAGTACAAAG
65 TCTCACGAAAGTACAAAG
42619979 CACTCTAGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 16 0.21
83 61 0.79
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (82 bp):
TTCGGAGAGCTAATTGATGAAACGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACAT
CTCACGAAAGTACAAAG
Found at i:42621661 original size:34 final size:34
Alignment explanation
Indices: 42621617--42621682 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
42621607 CGGTAAAATA
*
42621617 TTTTCCGTAAAATGATTT-CTAGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACT-GAAAATATTTTAC
*
42621651 TTTTCTGTAAAATGATTTACTGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAATATTTT
42621683 TTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (34 bp):
TTTTCCGTAAAATGATTTACTGAAAATATTTTAC
Found at i:42621797 original size:18 final size:18
Alignment explanation
Indices: 42621770--42621813 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
42621760 TTTTTACATA
42621770 TATATATT-AATAAATTTT
1 TATATATTAAAT-AATTTT
* *
42621788 TATATTTTAAATTATTTT
1 TATATATTAAATAATTTT
42621806 TATATATT
1 TATATATT
42621814 GTTTTTACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TATATATTAAATAATTTT
Found at i:42621960 original size:34 final size:34
Alignment explanation
Indices: 42621917--42621981 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
42621907 ACAACTAAAA
42621917 TCAATATTTGTAATTGTGTTAAAA-TAATAATAC
1 TCAATATTTGTAATTGTGTTAAAAGTAATAATAC
42621950 TCAATTATTTGTAATTGTGTTAAAAGTAATAA
1 TCAA-TATTTGTAATTGTGTTAAAAGTAATAA
42621982 AAAACAAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 4 0.13
34 20 0.67
35 6 0.20
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.43
Consensus pattern (34 bp):
TCAATATTTGTAATTGTGTTAAAAGTAATAATAC
Found at i:42622572 original size:26 final size:26
Alignment explanation
Indices: 42622539--42622588 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
42622529 ATATCAAAAT
42622539 TTATAGAGACCAATTTAAAATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
*
42622565 TTATAGAGACCAATTTAATATCTA
1 TTATAGAGACCAATTTAAAATCTA
42622589 ACTGTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAATCTAGA
Found at i:42622633 original size:19 final size:19
Alignment explanation
Indices: 42622609--42622661 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 19
42622599 CATATAGGAT
42622609 TTCAGCAAATAAACACATC
1 TTCAGCAAATAAACACATC
***
42622628 TTCAGCTTCTTAGAACACATC
1 TTCAGC-AAATA-AACACATC
*
42622649 TTCAGGAAATAAA
1 TTCAGCAAATAAA
42622662 TCATTAAAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 4
0.69 0.19 0.11
Matches are distributed among these distances:
19 8 0.32
20 4 0.16
21 13 0.52
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (19 bp):
TTCAGCAAATAAACACATC
Found at i:42624255 original size:24 final size:25
Alignment explanation
Indices: 42624223--42624269 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
42624213 TTAAGGTGAA
*
42624223 ATTTGATTT-TTTTTTGTTATTTTCT
1 ATTTGATTTCTTTTAT-TTATTTTCT
42624248 ATTT-ATTTCTTTTATTTATTTT
1 ATTTGATTTCTTTTATTTATTTT
42624270 TTTTCGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (25 bp):
ATTTGATTTCTTTTATTTATTTTCT
Found at i:42628842 original size:20 final size:20
Alignment explanation
Indices: 42628817--42628856 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
42628807 TTCACCTCAT
42628817 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
42628837 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
42628857 AAGACCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:42632547 original size:82 final size:82
Alignment explanation
Indices: 42632446--42632609 Score: 319
Period size: 82 Copynumber: 2.0 Consensus size: 82
42632436 TTCATTCATG
*
42632446 ACCATATTGCACCGAACAAATTCCTGAATCCATATTGTTTTTATAACAGGTCCTACGATATCAAT
1 ACCATATTACACCGAACAAATTCCTGAATCCATATTGTTTTTATAACAGGTCCTACGATATCAAT
42632511 GATACGAATGTCACTCT
66 GATACGAATGTCACTCT
42632528 ACCATATTACACCGAACAAATTCCTGAATCCATATTGTTTTTATAACAGGTCCTACGATATCAAT
1 ACCATATTACACCGAACAAATTCCTGAATCCATATTGTTTTTATAACAGGTCCTACGATATCAAT
42632593 GATACGAATGTCACTCT
66 GATACGAATGTCACTCT
42632610 TACAAATTTA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.32
Consensus pattern (82 bp):
ACCATATTACACCGAACAAATTCCTGAATCCATATTGTTTTTATAACAGGTCCTACGATATCAAT
GATACGAATGTCACTCT
Found at i:42637008 original size:45 final size:45
Alignment explanation
Indices: 42636935--42637170 Score: 185
Period size: 45 Copynumber: 5.3 Consensus size: 45
42636925 AAAAAGTAGT
* * * * * * * *
42636935 AGATCATGTCTTCCTATATTGGTAGCGAAGTGGATCGAATATACC
1 AGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAACC
* * *
42636980 AGATCTTGCCTTCCCATACTAGTGGCGAAGCAGATCGAAGAAAGC
1 AGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAACC
* * * *
42637025 AGATCTTATCTT--CAT-GTACTGGCGTAAAGTAGATC-AGAGATACC
1 AGATCTTGTCTTCCCATACTAGTGGCG--AAGTAGATCGA-AGAAACC
* * * *
42637069 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-AAAAAAAC
1 AGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAACC
* * * * *
42637113 AGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAACC
*
42637158 AGATCTTATCTTC
1 AGATCTTGTCTTC
42637171 ATGTACTGGC
Statistics
Matches: 152, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
42 7 0.05
43 4 0.03
44 62 0.41
45 71 0.47
46 3 0.02
47 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (45 bp):
AGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAACC
Found at i:42637072 original size:44 final size:45
Alignment explanation
Indices: 42637018--42637193 Score: 153
Period size: 44 Copynumber: 4.0 Consensus size: 45
42637008 AGCAGATCGA
* ** *
42637018 AGAAAGCAGATCTTATCTTCATGTACTGG-CGTAAAGTAGATCAG
1 AGAAAACAGATCTTATCTTCACATACTGGTCGTGAAGTAGATCAG
* * * * *
42637062 AGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCA-
1 AGAAAACAGATCTTATCTTCACATACTGGTCGTGAAGTAGATCAG
* * * * * *
42637106 AAAAAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATC-G
1 AGAAAACAGATCTTATCTTCACATACTGGTCGTGAAGTAGATCAG
* **
42637150 AAGAAAGCAGATCTTATCTTCATGTACTGG-CGTGAAGTAGATCA
1 -AGAAAACAGATCTTATCTTCACATACTGGTCGTGAAGTAGATCA
42637194 AAGATAGTAG
Statistics
Matches: 106, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
44 72 0.68
45 34 0.32
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (45 bp):
AGAAAACAGATCTTATCTTCACATACTGGTCGTGAAGTAGATCAG
Found at i:42637145 original size:89 final size:88
Alignment explanation
Indices: 42636962--42637195 Score: 220
Period size: 89 Copynumber: 2.6 Consensus size: 88
42636952 ATTGGTAGCG
* * * * * * * *
42636962 AAGTGGATCGAATATACCAGATCTTGCCTTCCCATACTAGTGGCGAAGCAGATCGAAGAAAGCAG
1 AAGTAGATCGAAGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-AAAAAAACAG
* **
42637027 ATCTTATCTTCATGTACTGGCGTA
65 ATCTTATCTCCACATACTGGCGTA
42637051 AAGTAGATC-AGAGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAAAAACAG
1 AAGTAGATCGA-AGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAAAAACAG
* * * *
42637115 ATCTTGTCTCCCCATACTGGTGGTG
65 ATCTTATCTCCACATACTGG-CGTA
* * * * *** *
42637140 GAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGG-CGTGAAGTAGATCAAA
1 AAGTAGATCGAAGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAA
42637196 GATAGTAGGT
Statistics
Matches: 119, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
88 39 0.33
89 79 0.66
90 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (88 bp):
AAGTAGATCGAAGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAAAAACAGA
TCTTATCTCCACATACTGGCGTA
Found at i:42637262 original size:133 final size:133
Alignment explanation
Indices: 42636927--42637280 Score: 397
Period size: 133 Copynumber: 2.7 Consensus size: 133
42636917 AGCAGGTTAA
* *
42636927 AAAG-TAGTAGATCATGTCTTCCTATATTGGTAGCGAAGTGGATCGAATATACCAGATCTTGCCT
1 AAAGATAGTAGATCATGTCTTCCTATATCGGTAGCGAAGTGGATCGAATATA-CAGATCTTGTCT
*
42636991 TCCCATACTAGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTAAAGTA
65 TCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTAAAGTA
42637056 GATC
130 GATC
* ** * * * * * * * *
42637060 AGAGATACCAGATCTTGTCTTCCCATA-CTGGTGGTGAAGTAGATCAAAAAAACAGATCTTGTCT
1 AAAGATAGTAGATCATGTCTTCCTATATC-GGTAGCGAAGTGGATCGAATATACAGATCTTGTCT
* * * * *
42637124 CCCCATACTGGTGGTGGAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTA
65 TCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTAAAGTA
42637189 GATC
130 GATC
* * * * ** * * * *
42637193 AAAGATAGTAGGTCCTGTCTTCATATATCGGTAACGGGGTGGATCGAATATATATATTTTATCTT
1 AAAGATAGTAGATCATGTCTTCCTATATCGGTAGCGAAGTGGATCGAATATACAGATCTTGTCTT
* *
42637258 CCCATACTGGTGGCAAAGTAGAT
66 CCCATACTGGTGGCGAAGCAGAT
42637281 TGAAAATTAC
Statistics
Matches: 175, Mismatches: 43, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
133 139 0.79
134 36 0.21
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (133 bp):
AAAGATAGTAGATCATGTCTTCCTATATCGGTAGCGAAGTGGATCGAATATACAGATCTTGTCTT
CCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTAAAGTAG
ATC
Found at i:42637471 original size:44 final size:45
Alignment explanation
Indices: 42637423--42637507 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 45
42637413 CGGAAAAAGC
** *
42637423 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAAT
1 AGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAAGAAAAT
* *
42637467 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA
1 AGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAAGA
42637508 CACAAGTCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 18 0.51
45 17 0.49
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (45 bp):
AGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAAGAAAAT
Found at i:42638430 original size:24 final size:23
Alignment explanation
Indices: 42638403--42638461 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
42638393 TTAAGGTGAA
42638403 ATTTGATTTTTTTTTCTTTT-TGTT
1 ATTT-ATTTTTTTTTCTTTTAT-TT
*
42638427 ATTT-TCTATTTATTTCTTTTATTT
1 ATTTAT-T-TTTTTTTCTTTTATTT
42638451 ATTTATTTTTT
1 ATTTATTTTTT
42638462 CGTTTTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
22 1 0.03
23 4 0.14
24 22 0.76
25 2 0.07
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (23 bp):
ATTTATTTTTTTTTCTTTTATTT
Found at i:42641267 original size:7 final size:7
Alignment explanation
Indices: 42641255--42641283 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
42641245 GGGGAGGATG
42641255 ACATGAA
1 ACATGAA
42641262 ACATGAA
1 ACATGAA
42641269 ACATGAA
1 ACATGAA
42641276 ACATGAA
1 ACATGAA
42641283 A
1 A
42641284 ATCAACCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (7 bp):
ACATGAA
Found at i:42645839 original size:15 final size:17
Alignment explanation
Indices: 42645809--42645840 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
42645799 TAAAAAGTGT
42645809 TTTTTATTCTAAAAATA
1 TTTTTATTCTAAAAATA
42645826 TTTTT-TTC-AAAAATA
1 TTTTTATTCTAAAAATA
42645841 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTTTATTCTAAAAATA
Found at i:42658608 original size:7 final size:7
Alignment explanation
Indices: 42658590--42658619 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
42658580 TATTAATATT
42658590 TTTAATAA
1 TTTAA-AA
42658598 TTTAAAA
1 TTTAAAA
42658605 TTTAAAA
1 TTTAAAA
42658612 TTTAAAA
1 TTTAAAA
42658619 T
1 T
42658620 GATATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TTTAAAA
Found at i:42668007 original size:19 final size:19
Alignment explanation
Indices: 42667983--42668027 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
42667973 ATTGCGATAG
42667983 GATGTTACTTGCCATATAC
1 GATGTTACTTGCCATATAC
42668002 GATGTTACTTGCCATATAC
1 GATGTTACTTGCCATATAC
*
42668021 GAAGTTA
1 GATGTTA
42668028 ACAATTTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (19 bp):
GATGTTACTTGCCATATAC
Found at i:42669559 original size:22 final size:22
Alignment explanation
Indices: 42669529--42669582 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
42669519 AAGTTATGAA
*
42669529 ATATATAAAAAAATATATATGT
1 ATATATAAAAAAATATATATAT
* * *
42669551 ATGTATAAATATATATATATAT
1 ATATATAAAAAAATATATATAT
42669573 ATATATAAAA
1 ATATATAAAA
42669583 CATTAAATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (22 bp):
ATATATAAAAAAATATATATAT
Found at i:42669594 original size:2 final size:2
Alignment explanation
Indices: 42669541--42669579 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
42669531 ATATAAAAAA
* * *
42669541 AT AT AT AT GT AT GT AT AA AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
42669580 AAACATTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
AT
Found at i:42669653 original size:27 final size:25
Alignment explanation
Indices: 42669621--42669679 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
42669611 AAAAATGTGT
*
42669621 ATGTATGTGCAGGTATGCATTATAAAA
1 ATGTATGTGCA--TATACATTATAAAA
* *
42669648 ATGTATGTGTATATATATTATAAAA
1 ATGTATGTGCATATACATTATAAAA
42669673 ATGTATG
1 ATGTATG
42669680 AATGTATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 19 0.66
27 10 0.34
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.39
Consensus pattern (25 bp):
ATGTATGTGCATATACATTATAAAA
Found at i:42669672 original size:25 final size:26
Alignment explanation
Indices: 42669639--42669692 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
42669629 GCAGGTATGC
42669639 ATTATAAAAATGTATG-TGTATATAT
1 ATTATAAAAATGTATGATGTATATAT
42669664 ATTATAAAAATGTATGAATGTATATAT
1 ATTATAAAAATGTATG-ATGTATATAT
42669691 AT
1 AT
42669693 AACAAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 16 0.59
27 11 0.41
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (26 bp):
ATTATAAAAATGTATGATGTATATAT
Found at i:42669699 original size:27 final size:25
Alignment explanation
Indices: 42669644--42669699 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
42669634 TATGCATTAT
* *
42669644 AAAAATGTATGTGTATATATATTAT
1 AAAAATGTATGTGTATATATATAAC
42669669 AAAAATGTATGAATGTATATATATAAC
1 AAAAATGTATG--TGTATATATATAAC
42669696 AAAA
1 AAAA
42669700 TTTGAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 11 0.41
27 16 0.59
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.36
Consensus pattern (25 bp):
AAAAATGTATGTGTATATATATAAC
Found at i:42669750 original size:11 final size:11
Alignment explanation
Indices: 42669728--42669757 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
42669718 TAAATGAGTA
42669728 AATAATAATAAT
1 AATAA-AATAAT
42669740 AATAAAATAAT
1 AATAAAATAAT
42669751 AATAAAA
1 AATAAAA
42669758 GAACAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:42671337 original size:44 final size:43
Alignment explanation
Indices: 42671289--42671511 Score: 125
Period size: 44 Copynumber: 5.0 Consensus size: 43
42671279 GGGATGAGGT
* *
42671289 TTGTAGTTTTAGTCTGTTCCACTGCAACTTCAGGGAGATAAGA
1 TTGTAGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* * * * *
42671332 CTTGTA-TCTTCAACCTACTCCACTACAACTTCAGGGAGATAAGGT
1 -TTGTAGT-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-GA
* * * *
42671377 TTGATATGATAATATCTAAT-T-CAACCTACTGCAACTTTAGAGG-TATATGA
1 TTG-TA-G-T--T-T-TAATCTGC-TCC-ACTGCAACTTCAG-GGAGATAAGA
* * * *
42671427 TTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
1 TT-GTAGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* *
42671471 TTG--GTTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TTGTAGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
42671512 CTCGTTATCT
Statistics
Matches: 135, Mismatches: 28, Indels: 35
0.68 0.14 0.18
Matches are distributed among these distances:
41 34 0.25
43 3 0.02
44 59 0.44
45 6 0.04
46 2 0.01
48 2 0.01
49 3 0.02
50 8 0.06
51 16 0.12
52 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
TTGTAGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
Found at i:42671782 original size:81 final size:81
Alignment explanation
Indices: 42671666--42671821 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
42671656 AACTTCAGGG
* * * * *
42671666 AGATAAGATTGGATACGATCTGCTCTATTGTAACTTCAAAGAGATAATATTTGTGGTTTTAATTC
1 AGATAAGATTGGATACGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTGGTTTTAATCC
42671731 GCTCCACTGCTTAGGA
66 GCTCCACTGCTTAGGA
* * *
42671747 AGATAAGACTT-GATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATC
1 AGATAAGA-TTGGATACGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTGGTTTTAATC
42671811 CGCTCCACTGC
65 CGCTCCACTGC
42671822 AACTTCAGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
81 64 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (81 bp):
AGATAAGATTGGATACGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTGGTTTTAATCC
GCTCCACTGCTTAGGA
Found at i:42671792 original size:41 final size:41
Alignment explanation
Indices: 42671642--42671924 Score: 138
Period size: 41 Copynumber: 6.8 Consensus size: 41
42671632 GGTTTCTTCA
* *
42671642 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGATACG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTT-GATGCG
* * * * * *
42671683 ATCTGCTCTATTGTAACTTCAAAGAGATAATATTTG-TG-G
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGATGCG
42671722 TTTTAAT-TCGCTCCACTG---CTT-AG-GAAGATAAGACTTGATGCG
1 -----ATCT-GCTCCACTGCAACTTCAGAG-AGATAAGACTTGATGCG
* * * ***
42671764 ATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-CT-T-GATGCG
* * ** *
42671808 ATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGCTTTTTCCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATA--A--GACTTGATGCG
* * *
42671853 -TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGATGCG
*
42671893 ATCTG-TCCTACTACAACTTCAGAGAGATAAGA
1 ATCTGCTCC-ACTGCAACTTCAGAGAGATAAGA
42671925 TCTGTGGTTT
Statistics
Matches: 182, Mismatches: 35, Indels: 50
0.68 0.13 0.19
Matches are distributed among these distances:
37 10 0.05
38 1 0.01
39 2 0.01
40 23 0.13
41 67 0.37
42 7 0.04
43 2 0.01
44 63 0.35
45 2 0.01
46 2 0.01
47 2 0.01
48 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (41 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGATGCG
Found at i:42671822 original size:210 final size:210
Alignment explanation
Indices: 42671547--42671944 Score: 586
Period size: 210 Copynumber: 1.9 Consensus size: 210
42671537 GCATAAAGTC
* * *
42671547 TGATGTGATCTGCTCTATTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTTCACTGC
1 TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTCCACTGC
*
42671612 AACTTCAG-GAAGATAGGATTGG-TTTCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
66 AACTTCAGAG-AGATAGGATTGGCTTT-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
* ** * * *
42671675 TGGATACGATCTG-CTCTATTGTAACTTCAAAGAGATAATATTTGTGGTTTTAATTCGCTCCACT
129 TGGATACGATCTGTC-CTACTACAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACT
42671739 GCTTAGGAAGATAAGACT
193 GCTTAGGAAGATAAGACT
* **
42671757 TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGC
1 TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTCCACTGC
**
42671822 AACTTCAGAGAGATAGGATTGGCTTTTTCCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
66 AACTTCAGAGAGATAGGATTGGCTTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
** *
42671887 GATGTGATCTGTCCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTC
131 GATACGATCTGTCCTACTACAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTC
42671945 TACTACAACT
Statistics
Matches: 167, Mismatches: 18, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
210 162 0.97
211 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (210 bp):
TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTCCACTGC
AACTTCAGAGAGATAGGATTGGCTTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
GATACGATCTGTCCTACTACAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCT
TAGGAAGATAAGACT
Found at i:42671824 original size:44 final size:44
Alignment explanation
Indices: 42671554--42671965 Score: 236
Period size: 44 Copynumber: 9.7 Consensus size: 44
42671544 GTCTGATGTG
* * * * **
42671554 ATCTGCTCTATTGCAACTTTAGAGAGATAAGATCTATCATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * *
42671598 ATCCGCTTCACTGCAACTTCAG-GAAGATAGGAT-TG-GTTTCTTCA
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGATCTGTGGTT-TT-A
* * ***
42671642 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TGGATACG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * * *
42671683 ATCTGCTCTATTGTAACTTCAAAGAGATAATATTTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* ***
42671727 AT-TCGCTCCACTG---CTT-AG-GAAGATAAGA-CT-T-GATGCG
1 ATCT-GCTCCACTGCAACTTCAGAG-AGATAAGATCTGTGGTTTTA
* *
42671764 ATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * *
42671808 ATCCGCTCCACTGCAACTTCAGAGAGATAGGAT-TG-GCTTTTTCC
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTG-GTTTT-A
* * * * *
42671852 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
*
42671893 ATCTG-TCCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCC-ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * *
42671937 ATCCGCTCTACTACAACTTCAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGAGAGATA
42671966 GGATTGGCTT
Statistics
Matches: 276, Mismatches: 64, Indels: 56
0.70 0.16 0.14
Matches are distributed among these distances:
37 12 0.04
38 2 0.01
39 2 0.01
40 14 0.05
41 64 0.23
42 9 0.03
43 17 0.06
44 153 0.55
45 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
Found at i:42671910 original size:129 final size:129
Alignment explanation
Indices: 42671747--42671993 Score: 390
Period size: 129 Copynumber: 1.9 Consensus size: 129
42671737 CTGCTTAGGA
* * *
42671747 AGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCC
1 AGATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
*
42671812 GCTCCACTGCAACTTCAGAGAGATAGGATTGGCTT-TTTCCGTCTGCTCCACTGCAACTTCAGGG
66 GCTCCACTACAACTTCAGAGAGATAGGATTGGCTTCTTT-CGTCTGCTCCACTGCAACTTCAGGG
*
42671876 AGATAAGACTGGATGTGATCTG-TCCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATC
1 AGATAAGACTGGATGCGATCTGCT-CTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATC
* * *
42671940 CGCTCTACTACAACTTCAGGGAGATAGGATTGGCTTCTTTTGTCTGCTCCACTG
65 CGCTCCACTACAACTTCAGAGAGATAGGATTGGCTTCTTTCGTCTGCTCCACTG
42671994 TACCACCAGG
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
128 1 0.01
129 104 0.96
130 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
AGATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
GCTCCACTACAACTTCAGAGAGATAGGATTGGCTTCTTTCGTCTGCTCCACTGCAACTTCAGGG
Found at i:42672259 original size:99 final size:99
Alignment explanation
Indices: 42672052--42672691 Score: 958
Period size: 99 Copynumber: 6.5 Consensus size: 99
42672042 TGCAATGTCG
* * **
42672052 GGGAAGCAAGATTCGCCGTCGCAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCG
1 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAA-CAAGATTCG
* * * * * *
42672117 CCATCGTAACTTTAATCTGTTCCACTGCACCACCA
65 CCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
* *
42672152 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATATTTTTAATTGCAATGTCAGGGAACAAGATTCGC
1 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
42672217 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
* *
42672251 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATATTTTTAATTGCAATGTCAGGGAACAAGATTCGC
1 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
42672316 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
* * * *
42672350 GGGAAGTAAGATTCGTTGTCGTGGCTTCAATCTTTTTAATTGTAATATCGGGGAATAAGATTCGC
1 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
* *
42672415 CGTTGTAGCTTCAATTTATTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
* * *
42672449 GGGAAGTAAGATTCACCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGT
1 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
*
42672514 CGTTGTAGTTTCAATCTGTTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
* ** * * * *
42672548 GGGAAGTAAGATTTGCCATTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGGACAAGATTCAC
1 GGGAAGTAAGATTCGCTGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
* *
42672613 CATTGTAGCTTCAATCTATTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
42672647 GGGAAGTAAGATTCG-TCGTCGTGGCTTCAATCTTTTTAATTGCAA
1 GGGAAGTAAGATTCGCT-GTCGTGGCTTCAATCTTTTTAATTGCAA
42672692 CCTCAGGGGT
Statistics
Matches: 494, Mismatches: 45, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
99 445 0.90
100 49 0.10
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (99 bp):
GGGAAGTAAGATTCGCTGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
Found at i:42674044 original size:17 final size:16
Alignment explanation
Indices: 42674018--42674055 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
42674008 CCGGTAGAGG
42674018 TTTTTTTGTTTTATTT
1 TTTTTTTGTTTTATTT
42674034 TTTTGTTTGTTTTATTT
1 TTTT-TTTGTTTTATTT
42674051 TTTTT
1 TTTTT
42674056 GTACCGTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.05, C:0.00, G:0.08, T:0.87
Consensus pattern (16 bp):
TTTTTTTGTTTTATTT
Found at i:42678325 original size:25 final size:26
Alignment explanation
Indices: 42678296--42678353 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
42678286 GCAGGTATGC
*
42678296 ATTATAAAAATGTATG-TGTATATAT
1 ATTATAAAAATCTATGATGTATATAT
42678321 ATTATAAAAATCTATGAATGTATATAT
1 ATTATAAAAATCTATG-ATGTATATAT
42678348 A-TATAA
1 ATTATAA
42678354 CAAAATTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 15 0.50
26 5 0.17
27 10 0.33
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (26 bp):
ATTATAAAAATCTATGATGTATATAT
Found at i:42682998 original size:35 final size:34
Alignment explanation
Indices: 42682919--42682999 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 34
42682909 ATGTGGATAC
*
42682919 ATATATATGTATATGAATTGTAAAATATACGAAAA
1 ATATATATGTATATGAATTATAAAATATAC-AAAA
*
42682954 ATATGTATGTATTTATGAATTATAAAATATA-AAAA
1 ATATATATGTA--TATGAATTATAAAATATACAAAA
*
42682989 CTATATATGTA
1 ATATATATGTA
42683000 AAAGAGGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
35 23 0.57
37 17 0.43
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.38
Consensus pattern (34 bp):
ATATATATGTATATGAATTATAAAATATACAAAA
Done.