Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 147 of 185
Found at i:44618477 original size:40 final size:40
Alignment explanation
Indices: 44618394--44618487 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
44618384 AATTTATTTT
44618394 AAAAATTA-AAAAAAGTATTTTAAAAAAATTTTAAAATTA
1 AAAAATTATAAAAAAGTATTTTAAAAAAATTTTAAAATTA
*
44618433 AAAAATAATAAAAAAGTATTTT-AAAAAATTTTAAAATTAA
1 AAAAATTATAAAAAAGTATTTTAAAAAAATTTTAAAATT-A
*
44618473 AAAAATTTTAAAAAA
1 AAAAATTATAAAAAA
44618488 TAAATATATG
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
39 23 0.46
40 27 0.54
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (40 bp):
AAAAATTATAAAAAAGTATTTTAAAAAAATTTTAAAATTA
Found at i:44619344 original size:43 final size:42
Alignment explanation
Indices: 44619239--44619421 Score: 182
Period size: 40 Copynumber: 4.4 Consensus size: 42
44619229 ACCACTATTG
* *
44619239 CCACAAACGCCGCTAAAGAACATGACTTTTAACAGCGCTTCCC
1 CCACAAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTT-CC
* **
44619282 CCACAAA---CGCTATAGAACATGACCTTTAGTGGCGCTTTCC
1 CCACAAACGCCGCTAAAGAACATGACCTTTAGCAGCGC-TTCC
*
44619322 CC-CTAAACGCCGCTAAAGAACATGACTTTTAGCAGCGCTTCC
1 CCAC-AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTCC
* **
44619364 CCAACAAA---CGCTATAGAACATGACCTTTAGTGGCGCTTTCC
1 CC-ACAAACGCCGCTAAAGAACATGACCTTTAGCAGCGC-TTCC
*
44619405 CCACAATCGCCGCTAAA
1 CCACAAACGCCGCTAAA
44619422 TGTCATTTTC
Statistics
Matches: 114, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
39 1 0.01
40 58 0.51
41 8 0.07
42 6 0.05
43 40 0.35
44 1 0.01
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (42 bp):
CCACAAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTCC
Found at i:44619382 original size:83 final size:83
Alignment explanation
Indices: 44619239--44619421 Score: 323
Period size: 83 Copynumber: 2.2 Consensus size: 83
44619229 ACCACTATTG
*
44619239 CCACAAACGCCGCTAAAGAACATGACTTTTAACAGCGCTTCCCCCACAAACGCTATAGAACATGA
1 CCACAAACGCCGCTAAAGAACATGACTTTTAACAGCGCTTCCCCAACAAACGCTATAGAACATGA
44619304 CCTTTAGTGGCGCTTTCC
66 CCTTTAGTGGCGCTTTCC
*
44619322 CC-CTAAACGCCGCTAAAGAACATGACTTTTAGCAGCGCTTCCCCAACAAACGCTATAGAACATG
1 CCAC-AAACGCCGCTAAAGAACATGACTTTTAACAGCGCTTCCCCAACAAACGCTATAGAACATG
44619386 ACCTTTAGTGGCGCTTTCC
65 ACCTTTAGTGGCGCTTTCC
*
44619405 CCACAATCGCCGCTAAA
1 CCACAAACGCCGCTAAA
44619422 TGTCATTTTC
Statistics
Matches: 95, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
82 1 0.01
83 93 0.98
84 1 0.01
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (83 bp):
CCACAAACGCCGCTAAAGAACATGACTTTTAACAGCGCTTCCCCAACAAACGCTATAGAACATGA
CCTTTAGTGGCGCTTTCC
Found at i:44625083 original size:25 final size:25
Alignment explanation
Indices: 44625055--44625104 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
44625045 TTCAAGCGAG
44625055 CTATATCAGGAAACTCACAAAGAGC
1 CTATATCAGGAAACTCACAAAGAGC
** *
44625080 CTATATCAGGATGCTCAGAAAGAGC
1 CTATATCAGGAAACTCACAAAGAGC
44625105 TGCGGTATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (25 bp):
CTATATCAGGAAACTCACAAAGAGC
Found at i:44626989 original size:25 final size:24
Alignment explanation
Indices: 44626945--44626996 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
44626935 AAGTTCAAGC
*
44626945 GAGCCATATCAGGAAGCTCACAAA
1 GAGCCATATCAGGAACCTCACAAA
* *
44626969 GAGCCTATATCAGGACCCTCATAAA
1 GAGCC-ATATCAGGAACCTCACAAA
44626994 GAG
1 GAG
44626997 TTGTGGTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.15
Consensus pattern (24 bp):
GAGCCATATCAGGAACCTCACAAA
Found at i:44627354 original size:21 final size:21
Alignment explanation
Indices: 44627300--44627354 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 21
44627290 TATACATGGA
* *
44627300 AAACATACATTTCACAATCAT
1 AAACATACATTTTAAAATCAT
* *
44627321 -AACATTCAATTTAAACAT-AT
1 AAACATACATTTTAAA-ATCAT
44627341 AAACATACATTTTA
1 AAACATACATTTTA
44627355 GTTACACGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (21 bp):
AAACATACATTTTAAAATCAT
Found at i:44627494 original size:21 final size:21
Alignment explanation
Indices: 44627470--44627513 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
44627460 AGTAAATTTA
*
44627470 ATTCATTTTAATACAATTCAC
1 ATTCAATTTAATACAATTCAC
* *
44627491 ATTCAATTTCATCCAATTCAC
1 ATTCAATTTAATACAATTCAC
44627512 AT
1 AT
44627514 CCTAGAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTCAATTTAATACAATTCAC
Found at i:44633994 original size:16 final size:16
Alignment explanation
Indices: 44633961--44633994 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
44633951 TGAGACTGTT
* *
44633961 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
44633977 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
44633993 AA
1 AA
44633995 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:44636822 original size:21 final size:21
Alignment explanation
Indices: 44636796--44636836 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
44636786 AGACGAGCAA
* *
44636796 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
44636817 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
44636837 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:44638775 original size:16 final size:16
Alignment explanation
Indices: 44638742--44638775 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
44638732 GGAGATTGTT
* *
44638742 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
44638758 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
44638774 AA
1 AA
44638776 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:44640877 original size:42 final size:41
Alignment explanation
Indices: 44640792--44640996 Score: 207
Period size: 42 Copynumber: 5.2 Consensus size: 41
44640782 CCACACCATA
* *
44640792 GCTTTACCTTTTGCGGCGTTTATGAGAAAAATGCCGCTATT
1 GCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCCACTATT
* *
44640833 GCTTTACCTTTTGCGGTGTTTATGAGAAAAAACGTCACTATT
1 GCTTTACCTTTTGCGGCGTTTATGAG-AAAAACGCCACTATT
44640875 GCTTTA-------C--C-TTTATGAGAAAAACGCCACTATT
1 GCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCCACTATT
* * *
44640906 GCTTTACCTTTTTACGGCATTTATGAGAAAAACGTCACTATT
1 GCTTTACC-TTTTGCGGCGTTTATGAGAAAAACGCCACTATT
* * * * *
44640948 ACTTTACCTTTTGCGGCGTTTATG-CAAAAACGGCGCTAAT
1 GCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCCACTATT
44640988 GCTTTACCT
1 GCTTTACCT
44640997 ATTGGGCATT
Statistics
Matches: 137, Mismatches: 15, Indels: 25
0.77 0.08 0.14
Matches are distributed among these distances:
31 20 0.15
32 8 0.06
35 1 0.01
39 1 0.01
40 20 0.15
41 40 0.29
42 47 0.34
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (41 bp):
GCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCCACTATT
Found at i:44640903 original size:31 final size:32
Alignment explanation
Indices: 44640851--44640916 Score: 116
Period size: 31 Copynumber: 2.1 Consensus size: 32
44640841 TTTTGCGGTG
*
44640851 TTTATGAGAAAAAACGTCACTATTGCTTTACC
1 TTTATGAGAAAAAACGCCACTATTGCTTTACC
44640883 TTTATGAG-AAAAACGCCACTATTGCTTTACC
1 TTTATGAGAAAAAACGCCACTATTGCTTTACC
44640914 TTT
1 TTT
44640917 TTACGGCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 25 0.76
32 8 0.24
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (32 bp):
TTTATGAGAAAAAACGCCACTATTGCTTTACC
Found at i:44640937 original size:73 final size:73
Alignment explanation
Indices: 44640810--44640958 Score: 228
Period size: 73 Copynumber: 2.0 Consensus size: 73
44640800 TTTTGCGGCG
* * * **
44640810 TTTATGAGAAAAATGCCGCTATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAAACGTCACTATT
1 TTTATGAGAAAAACGCCACTATTGCTTTACCTTTTACGGCATTTATGAGAAAAAACGTCACTATT
*
44640875 GCTTTACC
66 ACTTTACC
44640883 TTTATGAGAAAAACGCCACTATTGCTTTACCTTTTTACGGCATTTATGAG-AAAAACGTCACTAT
1 TTTATGAGAAAAACGCCACTATTGCTTTACC-TTTTACGGCATTTATGAGAAAAAACGTCACTAT
44640947 TACTTTACC
65 TACTTTACC
44640956 TTT
1 TTT
44640959 TGCGGCGTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
73 54 0.78
74 15 0.22
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (73 bp):
TTTATGAGAAAAACGCCACTATTGCTTTACCTTTTACGGCATTTATGAGAAAAAACGTCACTATT
ACTTTACC
Found at i:44641559 original size:19 final size:20
Alignment explanation
Indices: 44641535--44641577 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
44641525 TTTAAAAATT
44641535 TAATGAAAG-AAAAAATATA
1 TAATGAAAGTAAAAAATATA
*
44641554 TAATGATAGTAAAAAATATA
1 TAATGAAAGTAAAAAATATA
44641574 TAAT
1 TAAT
44641578 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (20 bp):
TAATGAAAGTAAAAAATATA
Found at i:44641654 original size:18 final size:18
Alignment explanation
Indices: 44641623--44641661 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
44641613 TAAGTTAACC
* * *
44641623 ATTTACAAATATAAGTAA
1 ATTTAAAAAAATAAATAA
44641641 ATTTAAAAAAATAAATAA
1 ATTTAAAAAAATAAATAA
44641659 ATT
1 ATT
44641662 CATATAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (18 bp):
ATTTAAAAAAATAAATAA
Found at i:44647742 original size:44 final size:44
Alignment explanation
Indices: 44647688--44647850 Score: 179
Period size: 44 Copynumber: 3.7 Consensus size: 44
44647678 AACTTTAATG
* ** ** *
44647688 TGCCTCACTGCAGCTTCAGGAGCTTAAGACTTGCTGATTTAGTT
1 TGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTGACCTAGTC
* *
44647732 TGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACCTAGTC
1 TGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTGACCTAGTC
* *
44647776 TG-CTCCACTACAACTTCAGGAGAATAAGACTTGCTTACCTAGTC
1 TGCCT-CACTGCAACTTCAGGAGAATAAGACTTGCTGACCTAGTC
*
44647820 TG-CTCCACAGCAACTTCAGG-GAGATAAGACT
1 TGCCT-CACTGCAACTTCAGGAGA-ATAAGACT
44647851 AGATGCGATC
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 4 0.04
44 102 0.96
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (44 bp):
TGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTGACCTAGTC
Found at i:44648038 original size:217 final size:216
Alignment explanation
Indices: 44647786--44648499 Score: 1094
Period size: 217 Copynumber: 3.3 Consensus size: 216
44647776 TGCTCCACTA
**
44647786 CAACTTCAGGAGAATAAGACTTGCTTACCTAGTCTGCTCCACAGCAACTTCAGGGAGATAAGACT
1 CAACTTCAGGAGAATAAGACTTGCTTAATTAGTCTGCTCCACAGCAACTTCAGGGAGATAAGACT
* * ** * * *
44647851 AGATGCGATCCGCTCTCTGCAACTTCAGAGAGGTAAGATC-AGATATTTTAGTCCGCTTCACTAC
66 AGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTA-ACCGCTCCACTGC
** *
44647915 AACTTCAGCGAGATAGGATTGTCGGCTTTAATCTGCTCCACTACAACTTCAAGGAGATAAGATTT
129 AACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTT
44647980 GCCATCTTCAGTCTGCCTCGCTG
194 GCCATCTTCAGTCTGCCTCGCTG
*
44648003 CAACTTCAGGAGGATAAGACTTGCTTAATTAGTCTGCTCCACTA-CAACTTCAGGGAGATAAGAC
1 CAACTTCAGGAGAATAAGACTTGCTTAATTAGTCTGCTCCAC-AGCAACTTCAGGGAGATAAGAC
* *
44648067 TAGATACGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTAAGGTTTTAACCCGCTCCACTGC
65 TAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAA-CCGCTCCACTGC
44648132 AACTTTC-GCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATT
129 AAC-TTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATT
* *
44648196 TGCCATTTTCAGTCTGCCTCACTG
193 TGCCATCTTCAGTCTGCCTCGCTG
*
44648220 CAACTTCAGGAGAATAAGACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 CAACTTCAGGAGAATAAGACTTGCTTAATTAGTCTGCTCCACAGCAACTTCAGGGAGATAAGACT
44648285 AGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAACC-CTCCACTGCAA
66 AGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAACCGCTCCACTGCAA
* * *
44648349 CTTCAGCGAGATAGGATTACCGGATTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGC
131 CTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGC
*
44648414 CATCTTCAGTCTACCTCGCTG
196 CATCTTCAGTCTGCCTCGCTG
* * * * * * *
44648435 CAACTTGAGGAGGATAAGACTTGCTTATTTAGTTTGCTCCACTGCAACTTCAAGGAGACAAGACT
1 CAACTTCAGGAGAATAAGACTTGCTTAATTAGTCTGCTCCACAGCAACTTCAGGGAGATAAGACT
44648500 CGATCTGTTA
Statistics
Matches: 458, Mismatches: 33, Indels: 14
0.91 0.07 0.03
Matches are distributed among these distances:
214 3 0.01
215 146 0.32
216 2 0.00
217 302 0.66
218 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (216 bp):
CAACTTCAGGAGAATAAGACTTGCTTAATTAGTCTGCTCCACAGCAACTTCAGGGAGATAAGACT
AGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAACCGCTCCACTGCAA
CTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGC
CATCTTCAGTCTGCCTCGCTG
Found at i:44648181 original size:261 final size:261
Alignment explanation
Indices: 44647587--44648284 Score: 652
Period size: 261 Copynumber: 2.7 Consensus size: 261
44647577 CTTCTTTTTC
* * * ** * * *
44647587 AAGGTTTTAATCCGCTCCATTGCAAATTCAAGGAAATAGGATTATTGGCTCTAATCTACTCCACC
1 AAGGTTTTAATCCGCTCCACTGCAACTTC-AGGAGATAGGATTACAGGCTTTAATCTGCTCCACT
* * * *
44647652 GCAACTTCAGAGAGATAAGATTTGCCAACTTTAATGTGCCTCACTGCAGCTTCAGGAGCTTAAGA
65 GCAACTTCAG-GAGATAAGA-TTGCCAACTTTAATCTGCCTCACTACAACTTCAGGAGCATAAGA
* * *
44647717 CTTGCTGATTTAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACCTAGTCTGCTCC
128 CTTGCTCATTTAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTAACTAGTCTGCTCC
* * * *
44647782 ACTACAACTTCAGGAGAATAAGACTTGCTTACCTAGTCTGCTCCACAGCAACTTCAGGGAGATAA
193 ACTACAACTTCAGGAGAATAAGACTAGCATACCGAGTCTGCTCCACAGCAACTTCAGAGAGATAA
44647847 GACT
258 GACT
* *** * * * * * *** * * *
44647851 -A-GATGCGATCCGCT-CTCTGCAACTTCAGAGAGGTAAGATCAGATATTTTAGTCCGCTTCACT
1 AAGGTTTTAATCCGCTCCACTGCAACTTCAG-GAGATAGGATTACAGGCTTTAATCTGCTCCACT
* * * **
44647913 ACAACTTCAGCGAGATAGGATTGTCGGCTTTAATCTG-CTCCACTACAACTTCAAGGAG-ATAAG
65 GCAACTTCAG-GAGATAAGATTGCCAACTTTAATCTGCCT-CACTACAACTTC-AGGAGCATAAG
* * *
44647976 ATTTGC-CATCTTCAGTCTGCCTCGCTGCAACTTCAGGAGGATAAGACTTGCTTAATTAGTCTGC
127 ACTTGCTCAT-TT-AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTAACTAGTCTGC
* * *
44648040 TCCACTACAACTTCAGG-GAGATAAGACTAG-ATA-CGA-TCTGCT-CTCTGTAACTTCAGAGAG
190 TCCACTACAACTTCAGGAGA-ATAAGACTAGCATACCGAGTCTGCTCCACAGCAACTTCAGAGAG
44648100 ATAAGATCT
254 ATAAGA-CT
* *
44648109 AAGGTTTTAACCCGCTCCACTGCAACTTTC-GCGAGATAGGATTACCGGCTTTAATCTGCTCCAC
1 AAGGTTTTAATCCGCTCCACTGCAAC-TTCAG-GAGATAGGATTACAGGCTTTAATCTGCTCCAC
* * * *
44648173 TGCAACTTCAAGGAGATAAGATTTGCC-ATTTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAA
64 TGCAACTTC-AGGAGATAAGA-TTGCCAACTTT-AATCTGCCTCACTACAACTTCAGGAGCATAA
* *
44648237 GACTTGCTTAATTAGTCTG-CTCCACTGCAACTTCAGG-GAGATAAGACT
126 GACTTGCTCATTTAGTCTGCCT-CACTGCAACTTCAGGAG-GATAAGACT
44648285 AGATGCGATC
Statistics
Matches: 341, Mismatches: 74, Indels: 41
0.75 0.16 0.09
Matches are distributed among these distances:
257 20 0.06
258 8 0.02
259 7 0.02
260 51 0.15
261 205 0.60
262 46 0.13
263 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (261 bp):
AAGGTTTTAATCCGCTCCACTGCAACTTCAGGAGATAGGATTACAGGCTTTAATCTGCTCCACTG
CAACTTCAGGAGATAAGATTGCCAACTTTAATCTGCCTCACTACAACTTCAGGAGCATAAGACTT
GCTCATTTAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTAACTAGTCTGCTCCACT
ACAACTTCAGGAGAATAAGACTAGCATACCGAGTCTGCTCCACAGCAACTTCAGAGAGATAAGAC
T
Found at i:44648189 original size:44 final size:43
Alignment explanation
Indices: 44647909--44648410 Score: 236
Period size: 44 Copynumber: 11.6 Consensus size: 43
44647899 TAGTCCGCTT
* * ** *
44647909 CACTACAACTTCAGCGAGATAGGATTGTCGGCTTTAATCTGCTC
1 CACTGCAACTTCAG-GAGATAAGATTACCGGATTTAATCTGCTC
* * *
44647953 CACTACAACTTCAAGGAGATAAGATTTGCC--ATCTTCAGTCTGC-C
1 CACTGCAACTTC-AGGAGATAAGA-TTACCGGAT-TT-AATCTGCTC
* * ** * *
44647997 TCGCTGCAACTTCAGGAGGATAAGACTT-GCTTAATTAGTCTGCTC
1 -CACTGCAACTTCAGGA-GATAAGA-TTACCGGATTTAATCTGCTC
* * ***
44648042 CACTACAACTTCAGGGAGATAAGACTA---GATACGATCTGCT-
1 CACTGCAACTTCA-GGAGATAAGATTACCGGATTTAATCTGCTC
* * * * * *
44648082 CTCTGTAACTTCAGAGAGATAAGATCTA-AGGTTTTAACCCGCTC
1 CACTGCAACTTCAG-GAGATAAGAT-TACCGGATTTAATCTGCTC
* *
44648126 CACTGCAACTTTC-GCGAGATAGGATTACCGGCTTTAATCTGCTC
1 CACTGCAAC-TTCAG-GAGATAAGATTACCGGATTTAATCTGCTC
* *
44648170 CACTGCAACTTCAAGGAGATAAGATTTGCC--ATTTTCAGTCTGC-C
1 CACTGCAACTTC-AGGAGATAAGA-TTACCGGA-TTT-AATCTGCTC
* ** * *
44648214 TCACTGCAACTTCAGGAGAATAAGACTT-GCTTAATTAGTCTGCTC
1 -CACTGCAACTTCAGGAG-ATAAGA-TTACCGGATTTAATCTGCTC
* ***
44648259 CACTGCAACTTCAGGGAGATAAGACTA---GATGCGATCTGCT-
1 CACTGCAACTTCA-GGAGATAAGATTACCGGATTTAATCTGCTC
* * * *
44648299 CTCTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTAA-C-CCTC
1 CACTGCAACTTCAG-GAGATAAGAT-TACCGGATTTAATCTGCTC
*
44648341 CACTGCAACTTCAGCGAGATAGGATTACCGGATTTAATCTGCTC
1 CACTGCAACTTCAG-GAGATAAGATTACCGGATTTAATCTGCTC
*
44648385 CACTGTAACTTCAGGGAGATAAGATT
1 CACTGCAACTTCA-GGAGATAAGATT
44648411 TGCCATCTTC
Statistics
Matches: 354, Mismatches: 65, Indels: 78
0.71 0.13 0.16
Matches are distributed among these distances:
39 2 0.01
40 40 0.11
41 22 0.06
42 30 0.08
43 19 0.05
44 160 0.45
45 79 0.22
46 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
CACTGCAACTTCAGGAGATAAGATTACCGGATTTAATCTGCTC
Found at i:44648224 original size:45 final size:43
Alignment explanation
Indices: 44648163--44648499 Score: 182
Period size: 44 Copynumber: 7.8 Consensus size: 43
44648153 CCGGCTTTAA
*
44648163 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATT-TTCAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTG-C-TTATT-AG
44648208 TCTGC-CTCACTGCAACTTC-AGGAGAATAAGACTTGCTTAATTAG
1 TCTGCTC-CACTGCAACTTCAAGGAG-ATAAGACTTGCTT-ATTAG
* * **
44648252 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG---ATGCG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTTATTAG
* * *
44648292 ATCTGCT-CTCTGCAACTTC-AGAGAGATAAGATCTAAGGTT-TTA-
1 -TCTGCTCCACTGCAACTTCAAG-GAGATAAGA-CT-TGCTTATTAG
* * * * ** *
44648335 AC-CCTCCACTGCAACTTC-AGCGAGATAGGA-TTACCGGATTTAA
1 TCTGCTCCACTGCAACTTCAAG-GAGATAAGACTT-GCTTA-TTAG
* * * * *
44648378 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTG-CTTATT-AG
* * *
44648423 TCTAC-CTCGCTGCAACTT-GAGGAGGATAAGACTTGCTTATTTAG
1 TCTGCTC-CACTGCAACTTCAAGGA-GATAAGACTTGCTTA-TTAG
* *
44648467 TTTGCTCCACTGCAACTTCAAGGAGACAAGACT
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACT
44648500 CGATCTGTTA
Statistics
Matches: 222, Mismatches: 42, Indels: 57
0.69 0.13 0.18
Matches are distributed among these distances:
39 1 0.00
40 24 0.11
41 10 0.05
42 27 0.12
43 3 0.01
44 89 0.40
45 68 0.31
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTTATTAG
Found at i:44660612 original size:128 final size:129
Alignment explanation
Indices: 44660430--44660689 Score: 504
Period size: 128 Copynumber: 2.0 Consensus size: 129
44660420 TGATGAAATA
44660430 TATATATATATATACATGTACACAAAAAAAAATACATAAGTTTAAAACAATTAAAATAATATCAA
1 TATATATATATATACATGTACACAAAAAAAAATACATAAGTTTAAAACAATTAAAATAATATCAA
*
44660495 AATTAATTAAATAAATTAAACATGTGTACACAAAATATACGAAAAATATTGGTTTTTTTAAAGG
66 AATTAATTAAATAAATTAAACATGTGTACACAAAATATACGAAAAATATTGGTTTTTTGAAAGG
44660559 TATATATATATATACATGTACAC-AAAAAAAATACATAAGTTTAAAACAATTAAAATAATATCAA
1 TATATATATATATACATGTACACAAAAAAAAATACATAAGTTTAAAACAATTAAAATAATATCAA
44660623 AATTAATTAAATAAATTAAACATGTGTACACAAAATATACGAAAAATATTGGTTTTTTGAAAGG
66 AATTAATTAAATAAATTAAACATGTGTACACAAAATATACGAAAAATATTGGTTTTTTGAAAGG
44660687 TAT
1 TAT
44660690 GAGTATCTAA
Statistics
Matches: 130, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
128 107 0.82
129 23 0.18
ACGTcount: A:0.53, C:0.08, G:0.07, T:0.32
Consensus pattern (129 bp):
TATATATATATATACATGTACACAAAAAAAAATACATAAGTTTAAAACAATTAAAATAATATCAA
AATTAATTAAATAAATTAAACATGTGTACACAAAATATACGAAAAATATTGGTTTTTTGAAAGG
Found at i:44662400 original size:88 final size:88
Alignment explanation
Indices: 44662297--44662475 Score: 288
Period size: 88 Copynumber: 2.0 Consensus size: 88
44662287 TTATGCAATA
* *
44662297 AATACTCAAGAAAATTAAGAGCAT-AATTCGAGTAAAAACTGACAGTTTAAAGCTTATTAAAACA
1 AATACTCAAGAAAATTAAGAGAATAAATTC-AGTAAAAACCGACAGTTTAAAGCTTATTAAAACA
* * *
44662361 TTGTTAGATGATCACTTGAAGTGC
65 CTATTAGATGATCACTTAAAGTGC
*
44662385 AATACTCAAGAAAATTAAGAGAATAAATTCAGTAAAAACCGATAGTTTAAAGCTTATTAAAACAC
1 AATACTCAAGAAAATTAAGAGAATAAATTCAGTAAAAACCGACAGTTTAAAGCTTATTAAAACAC
44662450 TATTAGATGATCACTTAAAGTGC
66 TATTAGATGATCACTTAAAGTGC
44662473 AAT
1 AAT
44662476 TTTGGGGTGT
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 79 0.94
89 5 0.06
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (88 bp):
AATACTCAAGAAAATTAAGAGAATAAATTCAGTAAAAACCGACAGTTTAAAGCTTATTAAAACAC
TATTAGATGATCACTTAAAGTGC
Found at i:44671276 original size:125 final size:125
Alignment explanation
Indices: 44671060--44671341 Score: 372
Period size: 125 Copynumber: 2.3 Consensus size: 125
44671050 TTATTTTGAG
**
44671060 TTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAAGATGCTATCAAAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTGATACCAAGATGCTATCAAAGAAGAAATTGT
* * * ** *
44671124 GAAATCGTGCCCTCGTGGACGTTATTTCGGTACAGTTGGTCATGTAAGAAATAATT-TTTT
65 AAAATCGCGCCCTCGAGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
* *
44671184 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTAT-ATGAGAAGAAATTG
1 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTGATACCAAGATGCTATCA-AAGAAGAAATTG
* * *
44671248 TAAAATCGCGCCCTCGAGGATGCGATTTCGCTACAGTTGGTCATTTAGGAAATAATTATTTT
64 TAAAATCGCGCCCTCGAGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
* * *
44671310 TTGACATTTCTGAGCAAATAGTGTCAAATCGC
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGC
44671342 GCCCTCGTGG
Statistics
Matches: 138, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
124 7 0.05
125 121 0.88
126 10 0.07
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTGATACCAAGATGCTATCAAAGAAGAAATTGTA
AAATCGCGCCCTCGAGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
Found at i:44673867 original size:29 final size:29
Alignment explanation
Indices: 44673829--44674713 Score: 1129
Period size: 29 Copynumber: 30.4 Consensus size: 29
44673819 TAAAATGGGC
** *
44673829 TTTTAATTAAATTAGTTTAGGGTTAGGGC
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* ***
44673858 TTTTAATTAAAATGGGTTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
** *
44673887 TTTTAATTAAATTAGGTTACGGTTTAGGG-
1 TTTTAATTAAATTAAATTA-GGGTTAGGGT
*
44673916 TTTTAATTAAATTAAACTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* **
44673945 TTTTAATTAACTTAGGTTAGGGTTAGGG-
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
44673973 TTTTAATTAAATTAAATTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
**
44674002 TTTTAATTAAATTAGGTTAGGGTTTAGGG-
1 TTTTAATTAAATTAAATTAGGG-TTAGGGT
*
44674031 TTTTAATTAAATTAAATTAAGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
**
44674060 TTTTAATTAAATTAGGTTAGGGTTTAGGG-
1 TTTTAATTAAATTAAATTAGGG-TTAGGGT
*
44674089 TTTTAATTAAATTAAATTAGGGTTAAGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
*
44674118 TTTTAATTAAATTAAACTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
** *
44674147 TTTTAATTAAATTAGGTTAAGGTTTAGGG-
1 TTTTAATTAAATTAAATT-AGGGTTAGGGT
*
44674176 TTTTAATTAAATTAAACTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* *
44674205 TTTTAATTAAATTAAACTAGGGCTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* **
44674234 TTTTATTTAAATTAGGTTAGGGTTTAGGG-
1 TTTTAATTAAATTAAATTAGGG-TTAGGGT
*
44674263 TTTTAATTAAATTAAATTAAGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
*
44674292 TTTTAATTAAATTAAACTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* *** *
44674321 TTTTAATTAAAATGGGTTAGGGTTATGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
44674350 TTTTAATTAAATTAAATTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* *
44674379 TTTTAATTAAATTAAATTAGGGTTAGAGA
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* **
44674408 TTTTAATTAAATTAAACTAGGGTTAAAGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* *** *
44674437 TTTTAATTAAAATGGGTTAAGGTTAGGGTTT
1 TTTTAATTAAATTAAATTAGGGTTAGGG--T
44674468 TTAATTAAATTAAATTAAATTAGGGTTAGGGT
1 TT--TT-AATTAAATTAAATTAGGGTTAGGGT
44674500 TTTTAATTAAATTAAATTAGGGTTAGGGTT
1 TTTTAATTAAATTAAATTAGGGTTAGGG-T
44674530 TTTTAA-TAAATTAAATTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
*
44674558 TTTTAATTAAATTAAACTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
* ***
44674587 TTTTAATTAAAATGGGTTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
*
44674616 TTTTAATTAAATTAAATTAGAGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
44674645 TTTTAATTAAATTAAATTAGGGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
44674674 TTTTAATTAAATTAAATTA-GGTTAGGGT
1 TTTTAATTAAATTAAATTAGGGTTAGGGT
*
44674702 TTTTAATCAAAT
1 TTTTAATTAAAT
44674714 AATATCAAAA
Statistics
Matches: 745, Mismatches: 93, Indels: 37
0.85 0.11 0.04
Matches are distributed among these distances:
28 86 0.12
29 589 0.79
30 43 0.06
31 3 0.00
32 3 0.00
33 2 0.00
34 19 0.03
ACGTcount: A:0.33, C:0.01, G:0.22, T:0.44
Consensus pattern (29 bp):
TTTTAATTAAATTAAATTAGGGTTAGGGT
Found at i:44675024 original size:24 final size:24
Alignment explanation
Indices: 44674992--44675047 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
44674982 TGTATGTGGA
44674992 GGTGTTTGCATCATGAACGGCAAC
1 GGTGTTTGCATCATGAACGGCAAC
*
44675016 GGTGTTTGCATCATGAACGGCGAC
1 GGTGTTTGCATCATGAACGGCAAC
44675040 GGTGTTTG
1 GGTGTTTG
44675048 AAAGCCATGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.29
Consensus pattern (24 bp):
GGTGTTTGCATCATGAACGGCAAC
Found at i:44676891 original size:14 final size:15
Alignment explanation
Indices: 44676874--44676907 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
44676864 AATAATTATC
44676874 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
44676888 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
44676903 TAAAA
1 TAAAA
44676908 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:44677121 original size:22 final size:22
Alignment explanation
Indices: 44677096--44677137 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
44677086 TTTAAGAGAT
*
44677096 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
44677118 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
44677138 TTTATGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:44679185 original size:22 final size:23
Alignment explanation
Indices: 44679140--44679187 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
44679130 AGTATGCAAC
*
44679140 CCACCCCAATCCAGCCCAACACA
1 CCACCCCAATCCAACCCAACACA
* *
44679163 CCACCCGAA-CCAACCCTACACA
1 CCACCCCAATCCAACCCAACACA
44679185 CCA
1 CCA
44679188 TGTGGGGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.35, C:0.56, G:0.04, T:0.04
Consensus pattern (23 bp):
CCACCCCAATCCAACCCAACACA
Found at i:44679617 original size:27 final size:26
Alignment explanation
Indices: 44679520--44679617 Score: 81
Period size: 27 Copynumber: 3.7 Consensus size: 26
44679510 ACCCTATAAG
* * * *
44679520 GGTATTTCAGTAAATTTCCAATCTGAG
1 GGTATTTCAATAATTTTACAATC-GAA
* * *
44679547 GGTATTTCAGTAATTTTGCAAATAG-A
1 GGTATTTCAATAATTTTAC-AATCGAA
* *
44679573 GGTACTTCGATAATTTTACAAGTCGAA
1 GGTATTTCAATAATTTTACAA-TCGAA
44679600 GGTATTTCAATAATTTTA
1 GGTATTTCAATAATTTTA
44679618 TAAACCAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.04
26 17 0.30
27 35 0.61
28 3 0.05
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (26 bp):
GGTATTTCAATAATTTTACAATCGAA
Found at i:44680355 original size:18 final size:19
Alignment explanation
Indices: 44680313--44680355 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
44680303 GGGTGTTACA
44680313 ATAATAGTATAAATTATTT
1 ATAATAGTATAAATTATTT
*
44680332 AAAATA-TATAAAGTTATTT
1 ATAATAGTATAAA-TTATTT
44680351 -TAATA
1 ATAATA
44680356 ATTTTATTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
ATAATAGTATAAATTATTT
Found at i:44682586 original size:5 final size:5
Alignment explanation
Indices: 44682576--44682602 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
44682566 AAAATAATCG
44682576 ATTTA ATTTA ATTTA ATTTA ATTTA AT
1 ATTTA ATTTA ATTTA ATTTA ATTTA AT
44682603 CACTTTAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTA
Found at i:44682994 original size:19 final size:17
Alignment explanation
Indices: 44682962--44682996 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
44682952 CGGGTCCATT
44682962 TCGACTTGTTTTGGGTC
1 TCGACTTGTTTTGGGTC
44682979 TCGATCTTGATTTTGGGT
1 TCGA-CTTG-TTTTGGGT
44682997 TATCGAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.09, C:0.14, G:0.29, T:0.49
Consensus pattern (17 bp):
TCGACTTGTTTTGGGTC
Found at i:44684030 original size:21 final size:20
Alignment explanation
Indices: 44683990--44684047 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
44683980 CGAATATACC
*
44683990 AACAGAAGCTCGAA-AGCTG
1 AACAGAAGCTCTAAGAGCTG
44684009 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTC-TAAGAGCTG
44684030 AACAGAAGCTCGTAAGAG
1 AACAGAAGCTC-TAAGAG
44684048 TTGATCCACT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.31
20 2 0.06
21 22 0.63
ACGTcount: A:0.43, C:0.19, G:0.26, T:0.12
Consensus pattern (20 bp):
AACAGAAGCTCTAAGAGCTG
Found at i:44686779 original size:17 final size:16
Alignment explanation
Indices: 44686752--44686836 Score: 50
Period size: 17 Copynumber: 5.2 Consensus size: 16
44686742 ATAATATTAT
*
44686752 TTTAATAAATTTAATA
1 TTTAATTAATTTAATA
*
44686768 TTTAAGTTAATTTGATA
1 TTTAA-TTAATTTAATA
* *
44686785 CTT-ATCT--TTATAGTA
1 TTTAAT-TAATT-TAATA
*
44686800 TTTTATTAATTTAATA
1 TTTAATTAATTTAATA
* *
44686816 TTAAATTTAATCTAATA
1 TTTAA-TTAATTTAATA
44686833 TTTA
1 TTTA
44686837 TCTTGATATG
Statistics
Matches: 51, Mismatches: 11, Indels: 13
0.68 0.15 0.17
Matches are distributed among these distances:
14 2 0.04
15 7 0.14
16 16 0.31
17 26 0.51
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (16 bp):
TTTAATTAATTTAATA
Found at i:44686813 original size:48 final size:49
Alignment explanation
Indices: 44686745--44686869 Score: 155
Period size: 48 Copynumber: 2.6 Consensus size: 49
44686735 TTAAAAAATA
* * * * *
44686745 ATAT-TATTTTAATAAATTTAATATTTAAGTTAATTTGATACTTATCTTT
1 ATATGTATTTT-ATTAATTTAATATTAAAGTTAATCTAATACTTATCTTG
* *
44686794 ATA-GTATTTTATTAATTTAATATTAAATTTAATCTAATATTTATCTTG
1 ATATGTATTTTATTAATTTAATATTAAAGTTAATCTAATACTTATCTTG
*
44686842 ATATGTATTATATTAATTTAATATTAAA
1 ATATGTATTTTATTAATTTAATATTAAA
44686870 ATAATTAAGT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
48 34 0.52
49 32 0.48
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (49 bp):
ATATGTATTTTATTAATTTAATATTAAAGTTAATCTAATACTTATCTTG
Found at i:44696178 original size:13 final size:13
Alignment explanation
Indices: 44696160--44696184 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44696150 AAGTTTTTTA
44696160 TTTTTAATTAATG
1 TTTTTAATTAATG
44696173 TTTTTAATTAAT
1 TTTTTAATTAAT
44696185 AAATATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:44696548 original size:13 final size:13
Alignment explanation
Indices: 44696530--44696643 Score: 66
Period size: 13 Copynumber: 7.8 Consensus size: 13
44696520 ATATGTGAAA
44696530 TATTTCAAATAAT
1 TATTTCAAATAAT
44696543 TATTTCAAATATCAT
1 TATTTCAAATA--AT
* * *
44696558 TATGTTTATATGTGAAA
1 TAT-TTCA-A-AT-AAT
44696575 TATTTCAAATAAT
1 TATTTCAAATAAT
44696588 TATTTCAAATATCAT
1 TATTTCAAATA--AT
* * *
44696603 TATGTTTATATGTGAAA
1 TAT-TTCA-A-AT-AAT
44696620 TATTTCAAATAAT
1 TATTTCAAATAAT
44696633 TATTTCAAATA
1 TATTTCAAATA
44696644 TCATAATGTT
Statistics
Matches: 77, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
13 37 0.48
14 2 0.03
15 12 0.16
16 12 0.16
17 10 0.13
18 2 0.03
19 2 0.03
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.46
Consensus pattern (13 bp):
TATTTCAAATAAT
Found at i:44696576 original size:23 final size:23
Alignment explanation
Indices: 44696549--44696690 Score: 116
Period size: 23 Copynumber: 6.3 Consensus size: 23
44696539 TAATTATTTC
*
44696549 AAATATCATTATGTTTATATGTG
1 AAATATCATAATGTTTATATGTG
** *
44696572 AAATATTTCA-AATAATTAT-T-TC
1 AAATA--TCATAATGTTTATATGTG
*
44696594 AAATATCATTATGTTTATATGTG
1 AAATATCATAATGTTTATATGTG
** *
44696617 AAATATTTCA-AATAATTAT-T-TC
1 AAATA--TCATAATGTTTATATGTG
44696639 AAATATCATAATGTTTATATGTG
1 AAATATCATAATGTTTATATGTG
* *
44696662 AAATATCATTATGTTTATAAGTG
1 AAATATCATAATGTTTATATGTG
44696685 AAATAT
1 AAATAT
44696691 TTCAAATACA
Statistics
Matches: 92, Mismatches: 17, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
20 6 0.07
21 13 0.14
22 14 0.15
23 41 0.45
24 12 0.13
25 6 0.07
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (23 bp):
AAATATCATAATGTTTATATGTG
Found at i:44696581 original size:45 final size:45
Alignment explanation
Indices: 44696517--44696667 Score: 293
Period size: 45 Copynumber: 3.4 Consensus size: 45
44696507 TTTCAAATAT
44696517 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATTATG
1 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATTATG
44696562 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATTATG
1 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATTATG
*
44696607 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATAATG
1 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATTATG
44696652 TTTATATGTGAAATAT
1 TTTATATGTGAAATAT
44696668 CATTATGTTT
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.46
Consensus pattern (45 bp):
TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATTATG
Found at i:44697156 original size:22 final size:22
Alignment explanation
Indices: 44697126--44697168 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
44697116 ACACCAAAAC
*
44697126 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
44697148 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
44697169 AGCACCGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:44697295 original size:43 final size:43
Alignment explanation
Indices: 44697229--44697438 Score: 267
Period size: 43 Copynumber: 4.9 Consensus size: 43
44697219 TTTTAGAAAT
** *
44697229 AAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
** * * **
44697272 AAACGCCATTAAAGACCAAGACCTTTAGTGGCGCTTTTGTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* *
44697315 AAACGCCGCTATAGACCATGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * **
44697358 AAACGCCGCTATAGACCATGGCCTTTAGCGGCGCTTTTGTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* *
44697401 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTT
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT
44697439 AATCAAAAAT
Statistics
Matches: 144, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 144 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:44697374 original size:86 final size:86
Alignment explanation
Indices: 44697229--44697504 Score: 306
Period size: 86 Copynumber: 3.2 Consensus size: 86
44697219 TTTTAGAAAT
** * *
44697229 AAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTTTCCCACAAACGCCATTAAAGACCAAGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAAGAC
*
44697294 CTTTAGTGGCGCTTTTGTCAC
66 CTTTAGCGGCGCTTTTGTCAC
* * * * * * *
44697315 AAACGCCGCTATAGACCATGGCCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGGC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAAGAC
44697380 CTTTAGCGGCGCTTTTGTCAC
66 CTTTAGCGGCGCTTTTGTCAC
* ** * * * * *
44697401 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTAATCAAAAATGCCACTATATAACAA-A
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTT-CCCACAAACGCCACTAAAGACCAAGA
* * *
44697465 CCTTTAGCGGCACTTCTCGCCA-
65 CCTTTAGCGGCGCTT-TTGTCAC
44697487 AAACGCCGCTAAA-AACAT
1 AAACGCCGCTAAAGAACAT
44697505 ATCATGCAAA
Statistics
Matches: 160, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
85 4 0.03
86 136 0.85
87 20 0.12
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (86 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAAGAC
CTTTAGCGGCGCTTTTGTCAC
Found at i:44697469 original size:129 final size:129
Alignment explanation
Indices: 44697229--44697499 Score: 303
Period size: 129 Copynumber: 2.1 Consensus size: 129
44697219 TTTTAGAAAT
** * *
44697229 AAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTTTCCCACAAACGCCATTAAAGACCAAGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCACAAACGCCACTAAAGAACAAGAC
* * * * * ** * *
44697294 CTTTAGTGGCGCTTTTGTCACAAACGCCGCTATAGACCATGGCCTTTAGCGGCGCTTTTC-CCA
66 CTTTAGCGGCGCTTTTATCAAAAACGCCACTATAGAACATAACCTTTAGCGGCACTTCTCGCCA
* * * ** * **
44697357 CAAACGCCGCTATAGACCATGGCCTTTAGCGGCGCTTTTGTCACAAACGCCGCTAAAGAACGTGA
1 -AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCACAAACGCCACTAAAGAACAAGA
* *
44697422 CCTTTAGCGGCGCTTTTAATCAAAAATGCCACTATATAACA-AACCTTTAGCGGCACTTCTCGCC
65 CCTTTAGCGGCGCTTTT-ATCAAAAACGCCACTATAGAACATAACCTTTAGCGGCACTTCTCGCC
44697486 A
129 A
44697487 AAACGCCGCTAAA
1 AAACGCCGCTAAA
44697500 AACATATCAT
Statistics
Matches: 116, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
129 96 0.83
130 20 0.17
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (129 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCACAAACGCCACTAAAGAACAAGAC
CTTTAGCGGCGCTTTTATCAAAAACGCCACTATAGAACATAACCTTTAGCGGCACTTCTCGCCA
Found at i:44702421 original size:11 final size:11
Alignment explanation
Indices: 44702407--44702466 Score: 56
Period size: 10 Copynumber: 5.7 Consensus size: 11
44702397 AAAATAAAAG
*
44702407 TTTAAAATCTT
1 TTTAAAATCAT
44702418 TTTAAAAT--T
1 TTTAAAATCAT
* *
44702427 TTTAAAA-AAA
1 TTTAAAATCAT
44702437 TTTAAAATC-T
1 TTTAAAATCAT
44702447 TTTAAAATTCAT
1 TTTAAAA-TCAT
44702459 TTTAAAAT
1 TTTAAAAT
44702467 TTTAAATCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
9 8 0.20
10 14 0.34
11 11 0.27
12 8 0.20
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (11 bp):
TTTAAAATCAT
Found at i:44702465 original size:29 final size:29
Alignment explanation
Indices: 44702400--44702474 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 29
44702390 TATTATAAAA
44702400 ATAAAAGTTTAAAATCTTTTTAAAATTTTT
1 ATAAAA-TTTAAAATCTTTTTAAAATTTTT
*
44702430 AAAAAAATTTAAAATC-TTTTAAAATTCATTT
1 -ATAAAATTTAAAATCTTTTTAAAATT--TTT
*
44702461 -TAAAATTTTAAATC
1 ATAAAATTTAAAATC
44702475 ACGAAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
29 22 0.56
30 9 0.23
31 8 0.21
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.45
Consensus pattern (29 bp):
ATAAAATTTAAAATCTTTTTAAAATTTTT
Found at i:44702471 original size:30 final size:30
Alignment explanation
Indices: 44702400--44702472 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
44702390 TATTATAAAA
*
44702400 ATAAAAGTTTAAAATCTTTTTAAAATTTTT
1 ATAAAAATTTAAAATCTTTTTAAAATTTTT
*
44702430 AAAAAAATTTAAAATC-TTTTAAAATTCATTT
1 ATAAAAATTTAAAATCTTTTTAAAATT--TTT
*
44702461 -TAAAATTTTAAA
1 ATAAAAATTTAAA
44702473 TCACGAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 10 0.27
30 24 0.65
31 3 0.08
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (30 bp):
ATAAAAATTTAAAATCTTTTTAAAATTTTT
Found at i:44702472 original size:20 final size:20
Alignment explanation
Indices: 44702407--44702469 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
44702397 AAAATAAAAG
*
44702407 TTTAAAATCTTTTTAAAATT
1 TTTAAAATCATTTTAAAATT
* *
44702427 TTTAAAA-AAATTTAAAATCT
1 TTTAAAATCATTTTAAAAT-T
44702447 TTTAAAATTCATTTTAAAATT
1 TTTAAAA-TCATTTTAAAATT
44702468 TT
1 TT
44702470 AAATCACGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 8 0.23
20 15 0.43
21 3 0.09
22 9 0.26
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTAAAATCATTTTAAAATT
Found at i:44703955 original size:105 final size:104
Alignment explanation
Indices: 44703784--44704144 Score: 512
Period size: 104 Copynumber: 3.5 Consensus size: 104
44703774 GGTGGATCCC
* * *
44703784 GCACTTAGC-ACCACCACTGAATTGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCAGCACT
** * *
44703848 TAGCAACCCCCTTTTTCATTTCAAAGATATGGTGGAATCA
66 TAGCAACCCCCTTTCACATTT-AAAAATACGGTGGAATCA
* **
44703888 GCACTTAGCAACCACCAATGGATAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCAGCACT
*
44703953 TAGCAACCCCCTTTCACATTTAAAAATACGGTGGACTCA
66 TAGCAACCCCCTTTCACATTTAAAAATACGGTGGAATCA
** * **
44703992 GCACACAGCAACCACCAAT-AAGTAGGGGAATCAACACTTAGCAACCCCTCGGGGGAATCAGCAC
1 GCACTTAGCAACCACCAATGAA-TAGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCAGCAC
*
44704056 TTAGCAACCCCCTTTCACATTTAAAAATACGATGGAATCA
65 TTAGCAACCCCCTTTCACATTTAAAAATACGGTGGAATCA
*
44704096 ACACTTAGCAACCACCAATGAATCA-GGGAATCAGCACACAGCAACCCCT
1 GCACTTAGCAACCACCAATGAAT-AGGGGAATCAGCACACAGCAACCCCT
44704145 TTATATGTAA
Statistics
Matches: 230, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
103 1 0.00
104 158 0.69
105 71 0.31
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.19
Consensus pattern (104 bp):
GCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCAGCACT
TAGCAACCCCCTTTCACATTTAAAAATACGGTGGAATCA
Found at i:44704658 original size:103 final size:104
Alignment explanation
Indices: 44704479--44704743 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
44704469 AACCGTTATT
* * * *
44704479 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
44704544 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
44704582 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
44704646 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
44704686 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
44704744 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:44705111 original size:29 final size:30
Alignment explanation
Indices: 44705078--44705134 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
44705068 CCACCCAACT
44705078 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * * *
44705107 TTTTGCATAATTATACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
44705135 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 5 0.22
30 18 0.78
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:44706303 original size:7 final size:7
Alignment explanation
Indices: 44706254--44706309 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
44706244 CACTAAAATG
*
44706254 TAAACTC
1 TAAACCC
*
44706261 TAAACCT
1 TAAACCC
44706268 TAAACCC
1 TAAACCC
* *
44706275 CAATCCC
1 TAAACCC
* *
44706282 CAAGCCC
1 TAAACCC
44706289 TAAA-CC
1 TAAACCC
44706295 TAAACCC
1 TAAACCC
44706302 TAAACCC
1 TAAACCC
44706309 T
1 T
44706310 GAACTCAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 6 0.15
7 34 0.85
ACGTcount: A:0.39, C:0.41, G:0.02, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:44711003 original size:21 final size:22
Alignment explanation
Indices: 44710979--44711023 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
44710969 AGAAAAAGAG
44710979 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
44711000 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
44711022 AA
1 AA
44711024 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:44713427 original size:34 final size:35
Alignment explanation
Indices: 44713334--44713429 Score: 104
Period size: 35 Copynumber: 2.8 Consensus size: 35
44713324 GTCCAAAAAG
* * *
44713334 AAATAATACATGAACAGGAGAGATTCCTTGCAACA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAACA
* *
44713369 AAATAATGCGTGAATAGGAGAGATTCCCTGCAA-G
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAACA
* * * *
44713403 AAATGATGTGTGAACAAGAAAGATTCC
1 AAATAATGCGTGAACAGGAGAGATTCC
44713430 TTCCAATTTA
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 22 0.43
35 29 0.57
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (35 bp):
AAATAATGCGTGAACAGGAGAGATTCCCTGCAACA
Found at i:44713894 original size:26 final size:27
Alignment explanation
Indices: 44713828--44713896 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
44713818 TAAAAAAATA
44713828 ACCAAAATATTATAAATTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
*
44713855 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
44713882 ACCAAAATA-TATAAA
1 ACCAAAATATTATAAA
44713897 AAAAACCTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 5 0.12
27 35 0.88
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (27 bp):
ACCAAAATATTATAAATTTTTTTATTT
Found at i:44713974 original size:27 final size:27
Alignment explanation
Indices: 44713943--44714000 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
44713933 CCTTGGTCAG
* *
44713943 GCCAAAGCCATTGGGGGCACCAAAGGT
1 GCCAAAGCCATTGGCGACACCAAAGGT
*
44713970 GCCAAAGCCATTGGCGACACCAATGGT
1 GCCAAAGCCATTGGCGACACCAAAGGT
44713997 GCCA
1 GCCA
44714001 TACTGATTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.12
Consensus pattern (27 bp):
GCCAAAGCCATTGGCGACACCAAAGGT
Found at i:44714129 original size:11 final size:11
Alignment explanation
Indices: 44714098--44714138 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
44714088 AGGTGCTGCG
*
44714098 GAAAAGGAA-A
1 GAAAAAGAAGA
44714108 GAAAAAG-AGA
1 GAAAAAGAAGA
*
44714118 GAAAGAGAAGA
1 GAAAAAGAAGA
44714129 GAAAAAGAAG
1 GAAAAAGAAG
44714139 GTATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
9 1 0.04
10 13 0.50
11 12 0.46
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (11 bp):
GAAAAAGAAGA
Found at i:44714273 original size:3 final size:3
Alignment explanation
Indices: 44714267--44714304 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
44714257 ATTATTATTA
44714267 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
44714305 AGTATTAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:44719584 original size:202 final size:202
Alignment explanation
Indices: 44719238--44719641 Score: 799
Period size: 202 Copynumber: 2.0 Consensus size: 202
44719228 GTGGGTCTCC
44719238 GGGCGCCACCGCTCCACTAGCGCAAATAATTAATCAAAGCGCAAGTCAGAGGACCGGATCAATGC
1 GGGCGCCACCGCTCCACTAGCGCAAATAATTAATCAAAGCGCAAGTCAGAGGACCGGATCAATGC
44719303 TACTGACCCAAATCCGGCTAGCTCTAAGTACGGCATCAATCGTGTATCCAGAGTTTTCTTTAAAA
66 TACTGACCCAAATCCGGCTAGCTCTAAGTACGGCATCAATCGTGTATCCAGAGTTTTCTTTAAAA
44719368 CACTCACACAACCCCTTAATACTCAGAACGAGTCCTGATAGTGTTAAATTACAAAAAAATATTAC
131 CACTCACACAACCCCTTAATACTCAGAACGAGTCCTGATAGTGTTAAATTACAAAAAAATATTAC
44719433 AATAACA
196 AATAACA
*
44719440 GGGCGCCACCGCTCCACTAGCGCAGATAATTAATCAAAGCGCAAGTCAGAGGACCGGATCAATGC
1 GGGCGCCACCGCTCCACTAGCGCAAATAATTAATCAAAGCGCAAGTCAGAGGACCGGATCAATGC
44719505 TACTGACCCAAATCCGGCTAGCTCTAAGTACGGCATCAATCGTGTATCCAGAGTTTTCTTTAAAA
66 TACTGACCCAAATCCGGCTAGCTCTAAGTACGGCATCAATCGTGTATCCAGAGTTTTCTTTAAAA
44719570 CACTCACACAACCCCTTAATACTCAGAACGAGTCCTGATAGTGTTAAATTACAAAAAAATATTAC
131 CACTCACACAACCCCTTAATACTCAGAACGAGTCCTGATAGTGTTAAATTACAAAAAAATATTAC
44719635 AATAACA
196 AATAACA
44719642 TAATTTATTT
Statistics
Matches: 201, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 201 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (202 bp):
GGGCGCCACCGCTCCACTAGCGCAAATAATTAATCAAAGCGCAAGTCAGAGGACCGGATCAATGC
TACTGACCCAAATCCGGCTAGCTCTAAGTACGGCATCAATCGTGTATCCAGAGTTTTCTTTAAAA
CACTCACACAACCCCTTAATACTCAGAACGAGTCCTGATAGTGTTAAATTACAAAAAAATATTAC
AATAACA
Found at i:44720053 original size:13 final size:13
Alignment explanation
Indices: 44720027--44720061 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
44720017 TCAATAAAAA
*
44720027 TATATTATTTTTT
1 TATATTATTATTT
*
44720040 TATTTTATTATTT
1 TATATTATTATTT
44720053 TATATTATT
1 TATATTATT
44720062 TCAGTACATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TATATTATTATTT
Found at i:44720356 original size:27 final size:27
Alignment explanation
Indices: 44720318--44720373 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
44720308 TTAGCCATAT
*
44720318 ATTGGTGCCGCCTTTTTATTCCTCTCC
1 ATTGGTGCCGCCTTTTTATTCCCCTCC
44720345 ATTGGTGCCGCCTTTTTATTCCCCTCC
1 ATTGGTGCCGCCTTTTTATTCCCCTCC
44720372 AT
1 AT
44720374 CACCCTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.09, C:0.34, G:0.14, T:0.43
Consensus pattern (27 bp):
ATTGGTGCCGCCTTTTTATTCCCCTCC
Found at i:44721132 original size:24 final size:22
Alignment explanation
Indices: 44721099--44721197 Score: 67
Period size: 23 Copynumber: 4.3 Consensus size: 22
44721089 ATTACATTTT
*
44721099 TTTCTCTTTTTTCCTTCCTTCCC
1 TTTCTTTTTTTTCCTT-CTTCCC
*
44721122 TCTTCTTTTTTTTTC-TCTTCTCC
1 T-TTCTTTTTTTTCCTTCTTC-CC
* **
44721145 TTTCCTTTTCTTTCCTTCTTTTTC
1 TTT-CTTTTTTTTCCTTC-TTCCC
*
44721169 TTTCTTTTTTCTT-CTTCTTTCC
1 TTTCTTTTTT-TTCCTTCTTCCC
44721191 TCTTCTT
1 T-TTCTT
44721198 CTTCTTTCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
22 11 0.18
23 29 0.48
24 19 0.31
25 2 0.03
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCTTTTTTTTCCTTCTTCCC
Found at i:44721152 original size:23 final size:23
Alignment explanation
Indices: 44721126--44721275 Score: 74
Period size: 22 Copynumber: 6.9 Consensus size: 23
44721116 CTTCCCTCTT
44721126 CTTTTTTTTTCTCTTCTCCTTTC
1 CTTTTTTTTTCTCTTCTCCTTTC
* *
44721149 C-TTTTCTTTC-CTTCT--TTTT
1 CTTTTTTTTTCTCTTCTCCTTTC
* *
44721168 CTTTCTTTTT-TCTTCTTCTTTC
1 CTTTTTTTTTCTCTTCTCCTTTC
* * *
44721190 CTCTTCTTCT-TCTT-T-C--T-
1 CTTTTTTTTTCTCTTCTCCTTTC
* *
44721207 ATTTTTTCTTCTCTTCTCCTTTC
1 CTTTTTTTTTCTCTTCTCCTTTC
* *
44721230 CTTTTTCTTTCT-TTCCTCTCCTTC
1 CTTTTTTTTTCTCTT-CTC-CTTTC
44721254 CTTTCTTTCTTTCTC-TCTCCTT
1 CTTT-TTT-TTTCTCTTCTCCTT
44721276 CTCCCCCCCC
Statistics
Matches: 92, Mismatches: 20, Indels: 29
0.65 0.14 0.21
Matches are distributed among these distances:
17 5 0.05
18 5 0.05
19 5 0.05
20 13 0.14
21 6 0.07
22 24 0.26
23 13 0.14
24 10 0.11
25 5 0.05
26 6 0.07
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (23 bp):
CTTTTTTTTTCTCTTCTCCTTTC
Found at i:44721172 original size:4 final size:4
Alignment explanation
Indices: 44721151--44721267 Score: 61
Period size: 4 Copynumber: 29.2 Consensus size: 4
44721141 CTCCTTTCCT
*
44721151 TTTC TTTC CTTC -TT- TTTC TTTC TTT- TTTC -TTC -TTC TTTCC TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT-C T-TTC
* *
44721196 -TTC -TTC TTTC TATTT TTTC TTCTC TTCTCC TTTC CTT- TTTC TTTC
1 TTTC TTTC TTTC T-TTC TTTC TT-TC TT-T-C TTTC TTTC TTTC TTTC
* *
44721241 TTTCC TCTCC TTCC TTTC TTTC TTTC T
1 TTT-C T-TTC TTTC TTTC TTTC TTTC T
44721268 CTCTCCTTCT
Statistics
Matches: 93, Mismatches: 7, Indels: 26
0.74 0.06 0.21
Matches are distributed among these distances:
3 21 0.23
4 49 0.53
5 17 0.18
6 6 0.06
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:44721198 original size:57 final size:55
Alignment explanation
Indices: 44721137--44721279 Score: 136
Period size: 57 Copynumber: 2.6 Consensus size: 55
44721127 TTTTTTTTTC
* *
44721137 TCTTCTCCTTTCCT-TTTCTTTCCTTCT-TT-TTCTTTCTTTTTTCTTCTTCTTTCCTCT
1 TCTTCTCCTTT-CTATTT-TTT-CTTCTCTTCTCCTTTCCTTTTTC-T-TTCTTTCCTCT
*
44721194 TCTTCTTCTTTCTATTTTTTCTTCTCTTCTCCTTTCCTTTTTCTTTCTTTCCTC-
1 TCTTCTCCTTTCTATTTTTTCTTCTCTTCTCCTTTCCTTTTTCTTTCTTTCCTCT
* *
44721248 TCCT-TCCTTTCT-TTCTTTCTCTCTCCTTCTCC
1 TCTTCTCCTTTCTATTTTTTCT-TCT-CTTCTCC
44721280 CCCCCCACCT
Statistics
Matches: 75, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
52 7 0.09
53 10 0.13
54 10 0.13
55 15 0.20
56 8 0.11
57 25 0.33
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (55 bp):
TCTTCTCCTTTCTATTTTTTCTTCTCTTCTCCTTTCCTTTTTCTTTCTTTCCTCT
Found at i:44721206 original size:10 final size:10
Alignment explanation
Indices: 44721137--44721242 Score: 69
Period size: 10 Copynumber: 10.4 Consensus size: 10
44721127 TTTTTTTTTC
*
44721137 TCTTCTCCTT
1 TCTTCTTCTT
44721147 TCCTT-TTCTT
1 T-CTTCTTCTT
44721157 TCCTTCTT-TT
1 T-CTTCTTCTT
*
44721167 TCTTTCTTTTT
1 TC-TTCTTCTT
44721178 TCTTCTTCTT
1 TCTTCTTCTT
*
44721188 TCCTCTTC-T
1 TCTTCTTCTT
44721197 TCTTCTTTCTAT
1 TCTTC-TTCT-T
44721209 T-TT-TTCTT
1 TCTTCTTCTT
*
44721217 CTCTTCTCCTT
1 -TCTTCTTCTT
*
44721228 TCCTTTTTCTT
1 T-CTTCTTCTT
44721239 TCTT
1 TCTT
44721243 TCCTCTCCTT
Statistics
Matches: 78, Mismatches: 7, Indels: 22
0.73 0.07 0.21
Matches are distributed among these distances:
8 1 0.01
9 11 0.14
10 41 0.53
11 23 0.29
12 2 0.03
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (10 bp):
TCTTCTTCTT
Found at i:44721213 original size:46 final size:46
Alignment explanation
Indices: 44721124--44721275 Score: 121
Period size: 41 Copynumber: 3.5 Consensus size: 46
44721114 TCCTTCCCTC
*
44721124 TTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCT
1 TTCTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCT
*
44721170 TTCTTTTTTC-T-TC-T-T-CTTTCCTCTTC-TT-CTTC--TTTC-
1 TTCTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCT
* * * * *
44721206 -TATTTTTTCTTCTCTTCTCCTTTCCTTTTTCTTTCTTTCCTCTCCT
1 TTCTTTTTTCTTCTCTTCTCCTTTCC-TTTTCTTTCCTTCTTTTTCT
*
44721252 TCCTTTCTTTCTT-TCTCTCTCCTT
1 TTCTTT-TTTCTTCTCT-TCTCCTT
44721276 CTCCCCCCCC
Statistics
Matches: 83, Mismatches: 9, Indels: 26
0.70 0.08 0.22
Matches are distributed among these distances:
35 8 0.10
36 1 0.01
37 6 0.07
38 1 0.01
39 5 0.06
40 8 0.10
41 14 0.17
42 3 0.04
43 4 0.05
44 2 0.02
45 3 0.04
46 9 0.11
47 6 0.07
48 13 0.16
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.68
Consensus pattern (46 bp):
TTCTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCT
Found at i:44721215 original size:16 final size:15
Alignment explanation
Indices: 44721122--44721223 Score: 59
Period size: 16 Copynumber: 6.7 Consensus size: 15
44721112 CTTCCTTCCC
44721122 TCTTCTTT-TTTTTT
1 TCTTCTTTCTTTTTT
* **
44721136 CTCTTC-TCCTTTCCT
1 -TCTTCTTTCTTTTTT
* *
44721151 T-TTCTTTCCTTCTT
1 TCTTCTTTCTTTTTT
44721165 T-TTCTTTCTTTTTTCT
1 TCTTCTTTC-TTTTT-T
* *
44721181 TCTTCTTTCCTCTTCT
1 TCTTCTTT-CTTTTTT
44721197 TCTTCTTTCTATTTTT
1 TCTTCTTTCT-TTTTT
44721213 TCTTCTCTTCT
1 TCTTCT-TTCT
44721224 CCTTTCCTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
13 3 0.04
14 16 0.24
15 14 0.21
16 20 0.30
17 13 0.19
18 1 0.01
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTTCTTTCTTTTTT
Found at i:44721238 original size:35 final size:34
Alignment explanation
Indices: 44721095--44721243 Score: 118
Period size: 35 Copynumber: 4.4 Consensus size: 34
44721085 AAAAATTACA
* *
44721095 TTTTT-TTCTCTTTTTTCCTTC--CTTCCCTCTTC
1 TTTTTCTT-TCTTTTTTTCTTCTTCTTTCCTCTTC
*
44721127 TTTTTTTTTCTCTTCTCCTTTCCTT-TTCTTT-C-CTTC
1 TTTTTCTTTCT-TT-T--TTT-CTTCTTCTTTCCTCTTC
44721163 TTTTTCTTTC-TTTTTTCTTCTTCTTTCCTCTTC
1 TTTTTCTTTCTTTTTTTCTTCTTCTTTCCTCTTC
*
44721196 TTCTTCTTTCTATTTTTTCTTC-TCTTCTCCT-TTCC
1 TTTTTCTTTCT-TTTTTTCTTCTTCTT-TCCTCTT-C
44721231 TTTTTCTTTCTTT
1 TTTTTCTTTCTTT
44721244 CCTCTCCTTC
Statistics
Matches: 97, Mismatches: 5, Indels: 28
0.75 0.04 0.22
Matches are distributed among these distances:
30 3 0.03
31 9 0.09
32 9 0.09
33 18 0.19
34 11 0.11
35 25 0.26
36 15 0.15
37 4 0.04
38 3 0.03
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.70
Consensus pattern (34 bp):
TTTTTCTTTCTTTTTTTCTTCTTCTTTCCTCTTC
Found at i:44721277 original size:18 final size:22
Alignment explanation
Indices: 44721211--44721276 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
44721201 CTTTCTATTT
*
44721211 TTTCTTCTCTTCTCCTTTCCTT--
1 TTTCTT-TCTT-TCCTCTCCTTCC
44721233 TTTCTTTCTTTCCTCTCCTTCC
1 TTTCTTTCTTTCCTCTCCTTCC
44721255 TTTCTTTCTTTCTCTCTCCTTC
1 TTTCTTTCTTTC-CTCTCCTTC
44721277 TCCCCCCCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
20 9 0.22
21 4 0.10
22 18 0.45
23 9 0.22
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTCTTTCTTTCCTCTCCTTCC
Found at i:44721277 original size:81 final size:79
Alignment explanation
Indices: 44721124--44721274 Score: 196
Period size: 82 Copynumber: 1.9 Consensus size: 79
44721114 TCCTTCCCTC
* * * * *
44721124 TTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTTTTCTTCTTCTTT
1 TTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCCTCTCCTTCCTTTTTTCTTCTTCTCT
44721189 CCTCTTCTTCTTCT
66 CCTCTTCTTCTTCT
*
44721203 TTCTATTTTTTCTTCTCTTCTCCTTTCCTTTTTCTTTCTTTCCTCTCCTTCCTTTCTTTCTT-TC
1 TTCT-TTTTTT-TTCTCTTCTCCTTTCC-TTTTCTTTCCTTCCTCTCCTTCCTTT-TTTCTTCT-
44721267 TCTCTCCT
61 TCTCTCCT
44721275 TCTCCCCCCC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 4 0.07
80 6 0.10
81 16 0.26
82 22 0.36
83 13 0.21
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.68
Consensus pattern (79 bp):
TTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCCTCTCCTTCCTTTTTTCTTCTTCTCT
CCTCTTCTTCTTCT
Found at i:44721347 original size:27 final size:27
Alignment explanation
Indices: 44721309--44721362 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
44721299 CCACTATTAT
*
44721309 ACCATTGGTGCCGCCAATGGCTTTGGC
1 ACCATTGGTGCCGCCAATGGCATTGGC
44721336 ACCATTGGTGCCGCCAATGGCATTGGC
1 ACCATTGGTGCCGCCAATGGCATTGGC
44721363 CTGACCAGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.24
Consensus pattern (27 bp):
ACCATTGGTGCCGCCAATGGCATTGGC
Found at i:44721458 original size:21 final size:20
Alignment explanation
Indices: 44721417--44721457 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
44721407 TTTTTTTTGT
44721417 ATATTTTGATAAATAAAAAA
1 ATATTTTGATAAATAAAAAA
*
44721437 ATATTTTGGTAAATAAAAAA
1 ATATTTTGATAAATAAAAAA
44721457 A
1 A
44721458 AGTTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (20 bp):
ATATTTTGATAAATAAAAAA
Found at i:44721783 original size:22 final size:24
Alignment explanation
Indices: 44721737--44721783 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
44721727 TTTAAAATAT
*
44721737 ATATTCTATTTAAATTATTATAAA
1 ATATTCTATTTAAATTATCATAAA
*
44721761 ATATT-TATTTATA-TATCATAAA
1 ATATTCTATTTAAATTATCATAAA
44721783 A
1 A
44721784 ATTAAACTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 7 0.33
24 5 0.24
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (24 bp):
ATATTCTATTTAAATTATCATAAA
Found at i:44723314 original size:16 final size:17
Alignment explanation
Indices: 44723282--44723315 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
44723272 TAAGGAAATG
44723282 TGATTTATTTATGAAAA
1 TGATTTATTTATGAAAA
44723299 TGATTTATTT-TGAAAA
1 TGATTTATTTATGAAAA
44723315 T
1 T
44723316 TATGTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (17 bp):
TGATTTATTTATGAAAA
Found at i:44734725 original size:28 final size:28
Alignment explanation
Indices: 44734639--44734725 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 28
44734629 CTTCATTTAT
* *
44734639 AAAAAATGTTTAGGTACCAAATTAGGGAA
1 AAAAAATGTTTAGATACCAAATT-GAGAA
* *
44734668 AAAAGA-GTTTAGATACC-ACTTGTA-ACA
1 AAAAAATGTTTAGATACCAAATTG-AGA-A
*
44734695 AAAAAATGTTTAGATACCAAAATGAGAA
1 AAAAAATGTTTAGATACCAAATTGAGAA
44734723 AAA
1 AAA
44734726 TGACATAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
26 2 0.04
27 9 0.20
28 26 0.57
29 9 0.20
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (28 bp):
AAAAAATGTTTAGATACCAAATTGAGAA
Found at i:44745973 original size:25 final size:26
Alignment explanation
Indices: 44745937--44745988 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
44745927 ATTTGATTCG
*
44745937 AAATTTGCATATTTAAA-TAATATCC
1 AAATTTGCATATTAAAATTAATATCC
*
44745962 AAATTT-CAATATTAAAATTATTATCC
1 AAATTTGC-ATATTAAAATTAATATCC
44745988 A
1 A
44745989 CTTTAAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 14 0.61
26 8 0.35
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (26 bp):
AAATTTGCATATTAAAATTAATATCC
Found at i:44746437 original size:15 final size:15
Alignment explanation
Indices: 44746419--44746487 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
44746409 AATAAAAAGT
44746419 TAATTAATATTTATA
1 TAATTAATATTTATA
*
44746434 TAATTAACTA-TTAAA
1 TAATTAA-TATTTATA
44746449 TAATT-ATATTTAGTA
1 TAATTAATATTTA-TA
44746464 TATATT-ATA-TTATA
1 TA-ATTAATATTTATA
* *
44746478 AAAATAATAT
1 TAATTAATAT
44746488 ACATACACGT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
13 4 0.09
14 10 0.23
15 22 0.50
16 8 0.18
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (15 bp):
TAATTAATATTTATA
Found at i:44751296 original size:37 final size:37
Alignment explanation
Indices: 44751235--44751380 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
44751225 TACGTATGAT
* *
44751235 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
44751270 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
44751307 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
44751344 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
44751381 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:44751397 original size:46 final size:46
Alignment explanation
Indices: 44751344--44751612 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
44751334 TAAGTGTAGC
* **
44751344 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
44751390 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
44751436 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
44751488 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
44751534 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
44751586 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
44751613 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:44751463 original size:52 final size:52
Alignment explanation
Indices: 44751387--44751606 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
44751377 TAGCTAAAGC
* *
44751387 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
44751440 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
44751492 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
44751538 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
44751590 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
44751607 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:44751509 original size:98 final size:98
Alignment explanation
Indices: 44751344--44751612 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
44751334 TAAGTGTAGC
* * *
44751344 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
44751409 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
44751443 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
44751508 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
44751541 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
44751606 GATCAGA
66 GATCAGA
44751613 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:44753952 original size:10 final size:10
Alignment explanation
Indices: 44753937--44753981 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
44753927 TTAATTTCAA
44753937 TTTTTATAAT
1 TTTTTATAAT
44753947 TTTTTATAAT
1 TTTTTATAAT
*
44753957 TTTTT-TATT
1 TTTTTATAAT
*
44753966 TTTTCTTTAAT
1 TTTT-TATAAT
44753977 TTTTT
1 TTTTT
44753982 TTGAAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 7 0.23
10 17 0.55
11 7 0.23
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:44753959 original size:19 final size:20
Alignment explanation
Indices: 44753935--44753980 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
44753925 TATTAATTTC
44753935 AATTTTTATAATTTTT-TAT
1 AATTTTTATAATTTTTCTAT
* * *
44753954 AATTTTTTTATTTTTTCTTT
1 AATTTTTATAATTTTTCTAT
44753974 AATTTTT
1 AATTTTT
44753981 TTTGAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (20 bp):
AATTTTTATAATTTTTCTAT
Found at i:44754991 original size:15 final size:14
Alignment explanation
Indices: 44754971--44755039 Score: 72
Period size: 15 Copynumber: 4.9 Consensus size: 14
44754961 TGGTCTGCTG
44754971 CTTTTTTTTTCTTT
1 CTTTTTTTTTCTTT
* *
44754985 CCTTTTTCTT-TTT
1 CTTTTTTTTTCTTT
44754998 C-TTTTTTTTCTTT
1 CTTTTTTTTTCTTT
44755011 -TTCTTTTTCTTCTTT
1 CTT-TTTTT-TTCTTT
44755026 CTTTTTTTCTTCTT
1 CTTTTTTT-TTCTT
44755040 CTTCGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
12 7 0.15
13 8 0.17
14 13 0.28
15 17 0.36
16 2 0.04
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (14 bp):
CTTTTTTTTTCTTT
Found at i:44754997 original size:6 final size:6
Alignment explanation
Indices: 44754972--44755031 Score: 67
Period size: 6 Copynumber: 10.7 Consensus size: 6
44754962 GGTCTGCTGC
*
44754972 TTTT-T TTTTC- TTTCCT TTTTCT TTTTC- -TTT-T TTTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
44755015 TTTTCT TCTTTCT TTTT
1 TTTTCT T-TTTCT TTTT
44755032 TTCTTCTTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
4 3 0.06
5 11 0.23
6 27 0.57
7 6 0.13
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:44755016 original size:27 final size:28
Alignment explanation
Indices: 44754973--44755042 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
44754963 GTCTGCTGCT
*
44754973 TTTTTTTTC-TTTCCTTTTTCTT-TTTC
1 TTTTTTTTCTTTTTCTTTTTCTTCTTTC
44754999 TTTTTTTTCTTTTTCTTTTTCTTCTTTC
1 TTTTTTTTCTTTTTCTTTTTCTTCTTTC
*
44755027 -TTTTTTTCTTCTTCTT
1 TTTTTTTTCTTTTTCTT
44755043 CGGGCCAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.22
27 27 0.68
28 4 0.10
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTTTTTCTTTTTCTTTTTCTTCTTTC
Found at i:44755033 original size:21 final size:21
Alignment explanation
Indices: 44754973--44755043 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
44754963 GTCTGCTGCT
* *
44754973 TTTTTTTTCTTTC-CTTTTTC
1 TTTTTCTTCTTTCTTTTTTTC
*
44754993 TTTTTCTT-TTTTTTCTTTTTC
1 TTTTTCTTCTTTCTT-TTTTTC
44755014 TTTTTCTTCTTTCTTTTTTTC
1 TTTTTCTTCTTTCTTTTTTTC
*
44755035 TTCTTCTTC
1 TTTTTCTTC
44755044 GGGCCAAACC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
19 3 0.07
20 7 0.16
21 28 0.65
22 5 0.12
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTCTTCTTTCTTTTTTTC
Found at i:44755175 original size:18 final size:17
Alignment explanation
Indices: 44755152--44755202 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
44755142 CGCTCCCTTC
44755152 TCTTTTTTCTTCTTTTCT
1 TCTTTTTTCTT-TTTTCT
44755170 TCTTTTTT-TTTTCTCTCT
1 TCTTTTTTCTTTT-T-TCT
*
44755188 TCTCTTTTCTTTTTT
1 TCTTTTTTCTTTTTT
44755203 TGTCTTTTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 2 0.07
17 4 0.14
18 19 0.66
19 4 0.14
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
TCTTTTTTCTTTTTTCT
Found at i:44755182 original size:22 final size:22
Alignment explanation
Indices: 44755152--44755211 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
44755142 CGCTCCCTTC
44755152 TCTTTTTTCTTCTTTTCTTCTTT
1 TCTTTTTTCTTCTTTTC-TCTTT
*
44755175 T-TTTTTTC-TCTCTTCTCTTT
1 TCTTTTTTCTTCTTTTCTCTTT
44755195 TCTTTTTT-TGTCTTTTC
1 TCTTTTTTCT-TCTTTTC
44755212 GAAAAGCCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
20 6 0.19
21 12 0.38
22 13 0.41
23 1 0.03
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.77
Consensus pattern (22 bp):
TCTTTTTTCTTCTTTTCTCTTT
Found at i:44755202 original size:7 final size:7
Alignment explanation
Indices: 44755152--44755202 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
44755142 CGCTCCCTTC
44755152 TCTTTTT
1 TCTTTTT
44755159 TCTTCTTT
1 TCTT-TTT
44755167 TCTTCTTT
1 TCTT-TTT
44755175 T-TTTTT
1 TCTTTTT
* *
44755181 TCTCTCT
1 TCTTTTT
*
44755188 TCTCTTT
1 TCTTTTT
44755195 TCTTTTT
1 TCTTTTT
44755202 T
1 T
44755203 TGTCTTTTCG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
6 4 0.11
7 22 0.58
8 12 0.32
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (7 bp):
TCTTTTT
Found at i:44755208 original size:20 final size:18
Alignment explanation
Indices: 44755148--44755208 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 18
44755138 CCAGCGCTCC
44755148 CTTCTCTTTTTTCTTCTTTT
1 CTTCTCTTTTTT-TT-TTTT
*
44755168 CTTCT-TTTTTTTTTCTCT
1 CTTCTCTTTTTTTTT-TTT
44755186 CTTCTCTTTTCTTTTTTTGT
1 CTTCTCTTTT-TTTTTTT-T
44755206 CTT
1 CTT
44755209 TTCGAAAAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 1 0.03
18 9 0.26
19 11 0.31
20 14 0.40
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (18 bp):
CTTCTCTTTTTTTTTTTT
Found at i:44755665 original size:30 final size:30
Alignment explanation
Indices: 44755593--44755699 Score: 153
Period size: 30 Copynumber: 3.6 Consensus size: 30
44755583 GGAAAAATAT
* *
44755593 GGGTCTAAAATGCAATTTATGAAAATTTTA
1 GGGTCTAAAATGTAATTTATGAAAAGTTTA
*
44755623 GGG-CTCAAATGTAATTTATGAAAAGTTTA
1 GGGTCTAAAATGTAATTTATGAAAAGTTTA
*
44755652 GGGTCTAAAATGTAATTTATAAAAAGTTTA
1 GGGTCTAAAATGTAATTTATGAAAAGTTTA
* *
44755682 GGGGCTAAAATATAATTT
1 GGGTCTAAAATGTAATTT
44755700 TTTTTAAAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
29 26 0.38
30 43 0.62
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.36
Consensus pattern (30 bp):
GGGTCTAAAATGTAATTTATGAAAAGTTTA
Found at i:44755752 original size:17 final size:18
Alignment explanation
Indices: 44755724--44755761 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
44755714 ATTTTCTGAT
44755724 TTATTATTGTTATTATCA
1 TTATTATTGTTATTATCA
*
44755742 TTATT-TTGTTATTATTA
1 TTATTATTGTTATTATCA
44755759 TTA
1 TTA
44755762 AAATTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (18 bp):
TTATTATTGTTATTATCA
Found at i:44755790 original size:5 final size:5
Alignment explanation
Indices: 44755780--44755813 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
44755770 AAAGCATAAC
*
44755780 AACAA AACAA AAC-A AACAA AACAA AAAAA AACAA
1 AACAA AACAA AACAA AACAA AACAA AACAA AACAA
44755814 TAAGGGGCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AACAA
Found at i:44757534 original size:28 final size:28
Alignment explanation
Indices: 44757502--44757558 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
44757492 AATAAATATA
44757502 TTTATT-TTTTTAATTTTAAAATACTTTT
1 TTTATTATTTTTAATTTTAAAATA-TTTT
44757530 TTTATTATTTTTAATTTTAAAATATTTT
1 TTTATTATTTTTAATTTTAAAATATTTT
44757558 T
1 T
44757559 AAAATACTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (28 bp):
TTTATTATTTTTAATTTTAAAATATTTT
Found at i:44757555 original size:17 final size:17
Alignment explanation
Indices: 44757508--44757560 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
44757498 TATATTTATT
44757508 TTTTTAATTTTAAAATA
1 TTTTTAATTTTAAAATA
* *
44757525 -CTTT--TTTT--ATTA
1 TTTTTAATTTTAAAATA
44757537 TTTTTAATTTTAAAATA
1 TTTTTAATTTTAAAATA
44757554 TTTTTAA
1 TTTTTAA
44757561 AATACTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
12 3 0.11
13 3 0.11
14 4 0.15
15 4 0.15
16 3 0.11
17 10 0.37
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTAATTTTAAAATA
Found at i:44757569 original size:29 final size:29
Alignment explanation
Indices: 44757508--44757572 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
44757498 TATATTTATT
** *
44757508 TTTTTAATTTTAAAATACTTTTTTTATTA
1 TTTTTAATTTTAAAATACTTTTTAAAATA
44757537 TTTTTAATTTTAAAATA-TTTTTAAAATA
1 TTTTTAATTTTAAAATACTTTTTAAAATA
44757565 CTTTTTAA
1 -TTTTTAA
44757573 AATTTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 8 0.25
29 24 0.75
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTTAATTTTAAAATACTTTTTAAAATA
Found at i:44757571 original size:12 final size:11
Alignment explanation
Indices: 44757544--44757585 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
44757534 TTATTTTTAA
44757544 TTTTAAAATAT
1 TTTTAAAATAT
44757555 TTTTAAAATACT
1 TTTTAAAATA-T
44757567 TTTT-AAA-AT
1 TTTTAAAATAT
44757576 TTTTAAAATA
1 TTTTAAAATA
44757586 AATTTTTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 5 0.18
10 4 0.14
11 14 0.50
12 5 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:44757579 original size:21 final size:22
Alignment explanation
Indices: 44757544--44757585 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
44757534 TTATTTTTAA
44757544 TTTTAAAATATTTTTAAAATAC
1 TTTTAAAATATTTTTAAAATAC
*
44757566 TTTTTAAA-ATTTTTAAAATA
1 TTTTAAAATATTTTTAAAATA
44757586 AATTTTTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTTAAAATATTTTTAAAATAC
Found at i:44757591 original size:21 final size:23
Alignment explanation
Indices: 44757542--44757591 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
44757532 TATTATTTTT
44757542 AATTTTAAAATATTTTTAAAAT-
1 AATTTTAAAATATTTTTAAAATA
* *
44757564 ACTTTTTAAA-ATTTTTAAAATA
1 AATTTTAAAATATTTTTAAAATA
44757586 AATTTT
1 AATTTT
44757592 TGTATTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTTTAAAATATTTTTAAAATA
Found at i:44757598 original size:21 final size:22
Alignment explanation
Indices: 44757550--44757609 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
44757540 TTAATTTTAA
*
44757550 AATATTTTTAAAAT-ACTTTTT
1 AATATTTTTAAAATAAATTTTT
*
44757571 AAAATTTTTAAAATAAATTTTT
1 AATATTTTTAAAATAAATTTTT
*
44757593 -GTATTTATTAAAA-AAAT
1 AATATTT-TTAAAATAAAT
44757610 GGGCAGGGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
AATATTTTTAAAATAAATTTTT
Found at i:44758663 original size:29 final size:29
Alignment explanation
Indices: 44758602--44758663 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
44758592 TATTTCGTAC
* *
44758602 TTTTATATATATACATTATTTGCTTTATC
1 TTTTATATATATACATTATTTACTTTATA
* * * *
44758631 TTTTATATATATATATTTTTTATTTTTTA
1 TTTTATATATATACATTATTTACTTTATA
44758660 TTTT
1 TTTT
44758664 TTTTTGTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (29 bp):
TTTTATATATATACATTATTTACTTTATA
Found at i:44767560 original size:21 final size:21
Alignment explanation
Indices: 44767497--44767569 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 21
44767487 CAGAAATCTC
*
44767497 CCCTCGTTCTTGCTGGTTTCT
1 CCCTCGTTTTTGCTGGTTTCT
* * *
44767518 CCCT--TGTTTACTGGTTTGT
1 CCCTCGTTTTTGCTGGTTTCT
*
44767537 CCCTCGTTTTTGCTAGTTTCT
1 CCCTCGTTTTTGCTGGTTTCT
*
44767558 CCCCTCTTTTTT
1 -CCCTCGTTTTT
44767570 ACTTTGTTCT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
19 15 0.38
21 15 0.38
22 10 0.25
ACGTcount: A:0.03, C:0.30, G:0.15, T:0.52
Consensus pattern (21 bp):
CCCTCGTTTTTGCTGGTTTCT
Found at i:44770100 original size:13 final size:12
Alignment explanation
Indices: 44770076--44770106 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
44770066 TATTGTTGAT
44770076 AATGGGAATGGG
1 AATGGGAATGGG
44770088 AATGGGAAATGGG
1 AATGGG-AATGGG
44770101 AATGGG
1 AATGGG
44770107 TATTGCATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.35, C:0.00, G:0.48, T:0.16
Consensus pattern (12 bp):
AATGGGAATGGG
Found at i:44770122 original size:6 final size:6
Alignment explanation
Indices: 44770076--44770106 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
44770066 TATTGTTGAT
44770076 AATGGG AATGGG AATGGG AAATGGG AATGGG
1 AATGGG AATGGG AATGGG -AATGGG AATGGG
44770107 TATTGCATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.35, C:0.00, G:0.48, T:0.16
Consensus pattern (6 bp):
AATGGG
Found at i:44770188 original size:60 final size:59
Alignment explanation
Indices: 44770113--44770305 Score: 205
Period size: 60 Copynumber: 3.3 Consensus size: 59
44770103 TGGGTATTGC
*
44770113 ATGGGAATGGAAAATGGGAGGAGGGCACGGTGGAAGAGGGGAATCGATGGAAAAGGGGAG
1 ATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAGGGGAAT-GATGGAAAAGGGGAG
* * * * * * *
44770173 ATAGGAATGGGAAATGGGAGGACGGCACAGTGGAA-TGGGAAAT--TGG-AATGGGTATTG
1 ATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAGGGGAATGATGGAAAAGGGGA--G
* * * *
44770230 CATGGGAATAGGAAATGGGAGAAGGGAACGGTGGAAGAGGGGAATGATGGAAGAGGGGAG
1 -ATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAGGGGAATGATGGAAAAGGGGAG
44770290 ATGGGAATGGAGAAAT
1 ATGGGAATGG-GAAAT
44770306 TGCATTGTAT
Statistics
Matches: 105, Mismatches: 20, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
55 6 0.06
56 3 0.03
57 1 0.01
58 29 0.28
59 21 0.20
60 37 0.35
61 3 0.03
62 5 0.05
ACGTcount: A:0.36, C:0.04, G:0.47, T:0.13
Consensus pattern (59 bp):
ATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAGGGGAATGATGGAAAAGGGGAG
Found at i:44770305 original size:118 final size:118
Alignment explanation
Indices: 44770086--44770305 Score: 363
Period size: 118 Copynumber: 1.9 Consensus size: 118
44770076 AATGGGAATG
* *
44770086 GGAATGGGAAATGGGAATGGGTATTGCATGGGAATGGAAAATGGGAGGAGGGCACGGTGGAAGAG
1 GGAATGGGAAATGGGAATGGGTATTGCATGGGAATGGAAAATGGGAGAAGGGAACGGTGGAAGAG
44770151 GGGAATCGATGGAAAAGGGGAGATAGGAATGGGAAATGGGAGGACGGCACAGT
66 GGGAATCGATGGAAAAGGGGAGATAGGAATGGGAAATGGGAGGACGGCACAGT
*
44770204 GGAATGGGAAATTGGAATGGGTATTGCATGGGAATAGG-AAATGGGAGAAGGGAACGGTGGAAGA
1 GGAATGGGAAATGGGAATGGGTATTGCATGGGAAT-GGAAAATGGGAGAAGGGAACGGTGGAAGA
* *
44770268 GGGGAAT-GATGGAAGAGGGGAGATGGGAATGGAGAAAT
65 GGGGAATCGATGGAAAAGGGGAGATAGGAATGG-GAAAT
44770306 TGCATTGTAT
Statistics
Matches: 95, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
117 23 0.24
118 70 0.74
119 2 0.02
ACGTcount: A:0.35, C:0.04, G:0.46, T:0.15
Consensus pattern (118 bp):
GGAATGGGAAATGGGAATGGGTATTGCATGGGAATGGAAAATGGGAGAAGGGAACGGTGGAAGAG
GGGAATCGATGGAAAAGGGGAGATAGGAATGGGAAATGGGAGGACGGCACAGT
Found at i:44773948 original size:21 final size:22
Alignment explanation
Indices: 44773907--44773948 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
44773897 TTATCATTGT
**
44773907 TATAAAAAAATTTAATTATAAC
1 TATAAAAAAATTTAAAAATAAC
44773929 TATAAAAAAA-TTAAAAATAA
1 TATAAAAAAATTTAAAAATAA
44773949 TTATCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
TATAAAAAAATTTAAAAATAAC
Found at i:44774216 original size:21 final size:21
Alignment explanation
Indices: 44774192--44774242 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
44774182 TTATTTCTAG
*
44774192 TCTCACCGCTACAGTACCCAA
1 TCTCACCGCTACAGTAACCAA
*
44774213 TCTCACCGCTACAGTAACTAA
1 TCTCACCGCTACAGTAACCAA
44774234 TCTCACCGC
1 TCTCACCGC
44774243 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.41, G:0.10, T:0.22
Consensus pattern (21 bp):
TCTCACCGCTACAGTAACCAA
Found at i:44774393 original size:17 final size:16
Alignment explanation
Indices: 44774371--44774410 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
44774361 TAAAAAATTA
*
44774371 TATTTTTTTCATCTTTC
1 TATTTTTTT-ACCTTTC
44774388 TATTTTTTTACCTTTC
1 TATTTTTTTACCTTTC
*
44774404 AATTTTT
1 TATTTTT
44774411 ATATTTCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTTTTTACCTTTC
Found at i:44774425 original size:16 final size:16
Alignment explanation
Indices: 44774374--44774425 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 16
44774364 AAAATTATAT
*
44774374 TTTTTTCATCTTTCTAT
1 TTTTTT-ATCTTTCTAA
*
44774391 TTTTTTACCTTTC-AA
1 TTTTTTATCTTTCTAA
*
44774406 -TTTTTATATTTCTAA
1 TTTTTTATCTTTCTAA
44774421 TTTTT
1 TTTTT
44774426 ATGAATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 10 0.34
15 3 0.10
16 10 0.34
17 6 0.21
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTTATCTTTCTAA
Found at i:44781503 original size:19 final size:19
Alignment explanation
Indices: 44781479--44781520 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
44781469 GCAAAATTGG
44781479 AATATTACAAAATTTACTT
1 AATATTACAAAATTTACTT
* *
44781498 AATATTGCAAAATTTGCTT
1 AATATTACAAAATTTACTT
44781517 AATA
1 AATA
44781521 AAGTTAGGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (19 bp):
AATATTACAAAATTTACTT
Found at i:44782946 original size:45 final size:43
Alignment explanation
Indices: 44782882--44782965 Score: 150
Period size: 45 Copynumber: 1.9 Consensus size: 43
44782872 ATGAAAAAGT
44782882 TAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCC
1 TAGCTACACTTATCTGATCAAG-GAC-AAGTGATAAGTGGTAGCC
44782927 TAGCTACACTTATCTGATCAAGGACAAGTGATAAGTGGT
1 TAGCTACACTTATCTGATCAAGGACAAGTGATAAGTGGT
44782966 CATACATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
43 14 0.36
44 3 0.08
45 22 0.56
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (43 bp):
TAGCTACACTTATCTGATCAAGGACAAGTGATAAGTGGTAGCC
Found at i:44802446 original size:31 final size:31
Alignment explanation
Indices: 44802411--44802471 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
44802401 TAACAACCAG
*
44802411 TGACTTCAAT-AAAACTTATCGAATAGTTCAA
1 TGACTTAAATGAAAACTT-TCGAATAGTTCAA
* *
44802442 TGACTTAAATGAAAGCTTTTGAATAGTTCA
1 TGACTTAAATGAAAACTTTCGAATAGTTCA
44802472 GTGATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (31 bp):
TGACTTAAATGAAAACTTTCGAATAGTTCAA
Found at i:44802929 original size:22 final size:23
Alignment explanation
Indices: 44802904--44802946 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
44802894 AATTGAATTT
44802904 TTAAA-TCTGAAAAATAAAAGGA
1 TTAAATTCTGAAAAATAAAAGGA
*
44802926 TTAAATTTTGAAAAATAAAAG
1 TTAAATTCTGAAAAATAAAAG
44802947 TAAGAGGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.28
Consensus pattern (23 bp):
TTAAATTCTGAAAAATAAAAGGA
Found at i:44806079 original size:16 final size:15
Alignment explanation
Indices: 44806058--44806090 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 15
44806048 TTTTTTAGAT
44806058 TAATTTTTATTAAAAA
1 TAATTTTT-TTAAAAA
44806074 TAATTTTTTTAAAAA
1 TAATTTTTTTAAAAA
44806089 TA
1 TA
44806091 TAGTACACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TAATTTTTTTAAAAA
Found at i:44808631 original size:31 final size:31
Alignment explanation
Indices: 44808595--44808673 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
44808585 GGACCCCAAA
* *
44808595 AAGTTTAAGTACCAACTTA-AGAAGAAGTGTC
1 AAGTTTAAGTACCAAATTAGA-AAAAAGTGTC
* *
44808626 AAGTTTAGGTATCAAATTAGAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
*
44808657 AAGTTCAAGTACCAAAT
1 AAGTTTAAGTACCAAAT
44808674 GTTATATTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 39 0.98
32 1 0.03
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
Found at i:44814937 original size:21 final size:23
Alignment explanation
Indices: 44814904--44814955 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
44814894 TAAAAAAAAG
* *
44814904 TTAAAAAT-TTTATAA-T-TTAT
1 TTAAAAATAATTATAATTATTAA
44814924 TTAAAAATAATTATAATTATTAA
1 TTAAAAATAATTATAATTATTAA
44814947 TTAAAAATA
1 TTAAAAATA
44814956 TTGTACTAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 8 0.30
21 6 0.22
22 1 0.04
23 12 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TTAAAAATAATTATAATTATTAA
Found at i:44815254 original size:19 final size:20
Alignment explanation
Indices: 44815227--44815275 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
44815217 ATTCAAAATT
*
44815227 TAAATATATGAATTTA-TAA
1 TAAAAATATGAATTTAGTAA
* *
44815246 TAAAAATATTAATTTAGTGA
1 TAAAAATATGAATTTAGTAA
*
44815266 TAAAATTATG
1 TAAAAATATG
44815276 TAAACTATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (20 bp):
TAAAAATATGAATTTAGTAA
Found at i:44820388 original size:107 final size:108
Alignment explanation
Indices: 44820178--44820693 Score: 599
Period size: 107 Copynumber: 4.8 Consensus size: 108
44820168 GCTAATTGAT
*
44820178 GCAATATTTAGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTGCGATTTCTCGTT
1 GCAATATTTTGCGTTTGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTTGCGATTTCTCGTT
* * *
44820242 CAACCAAATGGCTTAATATCCTTTTCAAAAATCTCAAAAT-ATG
66 CAACCAAATAGCTAAATATCCTTTTCAAAAATATCAAAATGA-G
* * *
44820285 GCAATATTTTGCGTTTGGAGATTCGAGATAACATGCCCTAAGGTGCTGGG-TGTCGATTTTTCTC
1 GCAATATTTTGCGTTTGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTTG-CGA--TTTCTC
**
44820349 GTTCAACCAAATAGCTAAATATCC-TTTC-AATTTAT-AAAATGAG
63 GTTCAACCAAATAGCTAAATATCCTTTTCAAAAATATCAAAATGAG
* *
44820392 GCAATGTTTTGCGTTTGGAAATTCGA-AGAACGTGCCCTAAGGTACTGGGTTGCGATTTCTCGTT
1 GCAATATTTTGCGTTTGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTTGCGATTTCTCGTT
* * * *
44820456 AAACCAAATGGCTTAATATCCTTTTCAAAAATCTCAAAAT-ATG
66 CAACCAAATAGCTAAATATCCTTTTCAAAAATATCAAAATGA-G
* * *
44820499 GCAATGTTTTGCGTTT-GAAGATTCGAGATAACATGCCCTAAGGTGCTGGG-TGTCGATTTTTCT
1 GCAATATTTTGCGTTTGGAA-ATTCGAGAGAACGTGCCCTAAGGTGCTGGGTTG-CGA--TTTCT
*
44820562 CGTTCAACCAAATAGCTAAATATCC-TTTCAAAAGTTAT-AAAATGAG
62 CGTTCAACCAAATAGCTAAATATCCTTTTCAAAA-ATATCAAAATGAG
* * * * * *
44820608 GCAACATTTTGCGTTTGGAAATTCGAG-GAACGTGCTCTAAGGTGTTGGGTTACAATTTCTTGTT
1 GCAATATTTTGCGTTTGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTTGCGATTTCTCGTT
* * *
44820672 TAACCAAATTGTTAAATATCCT
66 CAACCAAATAGCTAAATATCCT
44820694 CTTGAATTTT
Statistics
Matches: 349, Mismatches: 40, Indels: 40
0.81 0.09 0.09
Matches are distributed among these distances:
104 27 0.08
105 4 0.01
106 57 0.16
107 89 0.26
108 71 0.20
109 40 0.11
110 61 0.17
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (108 bp):
GCAATATTTTGCGTTTGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTTGCGATTTCTCGTT
CAACCAAATAGCTAAATATCCTTTTCAAAAATATCAAAATGAG
Done.