Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 155 of 185
Found at i:46739691 original size:15 final size:15
Alignment explanation
Indices: 46739673--46739729 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
46739663 TATCAATATT
46739673 AATATTTTAATAATA
1 AATATTTTAATAATA
*
46739688 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
46739707 AATATATTAATAATA
1 AATATTTTAATAATA
*
46739722 AATGTTTT
1 AATATTTT
46739730 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:46743139 original size:5 final size:5
Alignment explanation
Indices: 46743129--46743160 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
46743119 AAGCATGAAG
46743129 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
46743161 ATCTTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:46743167 original size:15 final size:15
Alignment explanation
Indices: 46743132--46743167 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
46743122 CATGAAGTTT
*
46743132 TATTTTATTTTATTT
1 TATTTTATTTTATTA
46743147 TATTTTATTTTATTA
1 TATTTTATTTTATTA
*
46743162 TCTTTT
1 TATTTT
46743168 TTACAGGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (15 bp):
TATTTTATTTTATTA
Found at i:46748717 original size:25 final size:25
Alignment explanation
Indices: 46748689--46748769 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
46748679 ATATAAAAAC
46748689 TTGAACAATGACATGGAAAACTCAA
1 TTGAACAATGACATGGAAAACTCAA
** * *
46748714 TTGAA-AGATTGA-ATATATATA-TAAA
1 TTGAACA-A-TGACATGGA-AAACTCAA
46748739 CTTGAACAATGACATGGAAAACTCAA
1 -TTGAACAATGACATGGAAAACTCAA
46748765 TTGAA
1 TTGAA
46748770 AGATTGAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
24 1 0.02
25 22 0.54
26 17 0.41
27 1 0.02
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (25 bp):
TTGAACAATGACATGGAAAACTCAA
Found at i:46748740 original size:51 final size:51
Alignment explanation
Indices: 46748675--46748778 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
46748665 ATATACATAT
46748675 ATATATATAAAAACTTGAACAATGACATGGAAAACTCAATTGAAAGATTGA
1 ATATATATAAAAACTTGAACAATGACATGGAAAACTCAATTGAAAGATTGA
*
46748726 ATATATATATAAACTTGAACAATGACATGGAAAACTCAATTGAAAGATTGA
1 ATATATATAAAAACTTGAACAATGACATGGAAAACTCAATTGAAAGATTGA
46748777 AT
1 AT
46748779 TCTGAAAAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.50, C:0.10, G:0.13, T:0.27
Consensus pattern (51 bp):
ATATATATAAAAACTTGAACAATGACATGGAAAACTCAATTGAAAGATTGA
Found at i:46763327 original size:31 final size:31
Alignment explanation
Indices: 46763289--46763347 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
46763279 AGGAGGAAAA
46763289 AAGAGAGAAATAGTCTTAAAGTCAAAAAGTC
1 AAGAGAGAAATAGTCTTAAAGTCAAAAAGTC
* *
46763320 AAGAGAGAAATAGTGTTAAAGTGAAAAA
1 AAGAGAGAAATAGTCTTAAAGTCAAAAA
46763348 CTTATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.54, C:0.05, G:0.22, T:0.19
Consensus pattern (31 bp):
AAGAGAGAAATAGTCTTAAAGTCAAAAAGTC
Found at i:46764765 original size:28 final size:29
Alignment explanation
Indices: 46764723--46764782 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
46764713 GTATTTTCGT
46764723 AAAATCGATCTAATCAT-ATAAATTTTCAA
1 AAAATCGATCTAATC-TGATAAATTTTCAA
* * *
46764752 AAAAT-GATTTAATCTGATAATTTTTTAA
1 AAAATCGATCTAATCTGATAAATTTTCAA
46764780 AAA
1 AAA
46764783 TTGACATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 1 0.04
28 21 0.78
29 5 0.19
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.38
Consensus pattern (29 bp):
AAAATCGATCTAATCTGATAAATTTTCAA
Found at i:46767195 original size:22 final size:22
Alignment explanation
Indices: 46767139--46767202 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
46767129 GGGCCGAAAT
46767139 TTAATTATAATTTTATCATATA
1 TTAATTATAATTTTATCATATA
* * *
46767161 TCAAAATATAATTTTAT-ATGTA
1 T-TAATTATAATTTTATCATATA
*
46767183 TTAATTTATAATTTCATCAT
1 TTAA-TTATAATTTTATCAT
46767203 TTTTTAAGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
21 2 0.06
22 16 0.48
23 15 0.45
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
TTAATTATAATTTTATCATATA
Found at i:46768527 original size:41 final size:41
Alignment explanation
Indices: 46768465--46768600 Score: 227
Period size: 41 Copynumber: 3.3 Consensus size: 41
46768455 AATTTAACAT
* *
46768465 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
* * *
46768506 ATTCATATCACCGGCATTTAGCCTACTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
46768547 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
46768588 ATTCAGATCACCG
1 ATTCAGATCACCG
46768601 ATTCCAAACT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 87 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
Found at i:46775022 original size:13 final size:13
Alignment explanation
Indices: 46775004--46775031 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
46774994 GATAATAAAA
46775004 CATATAGAATACC
1 CATATAGAATACC
46775017 CATATAGAATACC
1 CATATAGAATACC
46775030 CA
1 CA
46775032 GAAGAGATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.21
Consensus pattern (13 bp):
CATATAGAATACC
Found at i:46777232 original size:21 final size:22
Alignment explanation
Indices: 46777203--46777245 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
46777193 TGAGTAAATT
*
46777203 TAACTCAATTTAATACAATTCA
1 TAACTCAATTCAATACAATTCA
*
46777225 TAAC-CAATTCAATTCAATTCA
1 TAACTCAATTCAATACAATTCA
46777246 CATTATAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (22 bp):
TAACTCAATTCAATACAATTCA
Found at i:46785065 original size:45 final size:45
Alignment explanation
Indices: 46785001--46785094 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
46784991 AACAGATACT
* *
46785001 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
46785046 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
46785091 CGGT
1 CGGT
46785095 TCACATAATA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:46785214 original size:50 final size:49
Alignment explanation
Indices: 46785096--46785281 Score: 162
Period size: 50 Copynumber: 3.7 Consensus size: 49
46785086 ATGTTCGGTT
* *
46785096 CACATAATAGCCTGCACATAGTACTACACATGTGAGCATTACCATCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGAGAATT--CATCTGATA
* *
46785147 CACGTAGTAGCCTGCACATAGTACTACACACTGATCGA-AATT-ATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACA-TG-T-GAGAATTCATCTGATA
* * ** * *
46785197 CGCATAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGAGAAT-TCA-TCTGATA
** * *
46785247 CATGTAGTAGCCTGCAGATAGTATTACACATGTGA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA
46785282 CCATCATTTT
Statistics
Matches: 113, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
47 3 0.03
48 1 0.01
49 3 0.03
50 70 0.62
51 28 0.25
52 2 0.02
53 4 0.04
54 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGAGAATTCATCTGATA
Found at i:46786358 original size:23 final size:23
Alignment explanation
Indices: 46786331--46786375 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
46786321 AAATTTGGGC
*
46786331 TATTACAAATTATGTCACTTTAT
1 TATTAAAAATTATGTCACTTTAT
* *
46786354 TATTAAAAATTGTGTCATTTTA
1 TATTAAAAATTATGTCACTTTA
46786376 ATCAAAAGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.49
Consensus pattern (23 bp):
TATTAAAAATTATGTCACTTTAT
Found at i:46795608 original size:36 final size:36
Alignment explanation
Indices: 46795561--46795629 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
46795551 AAAAATAAAA
*
46795561 TTTTTATTAAATTAT-TTTTTTATAAATTTTTAATGG
1 TTTTTAATAAATT-TGTTTTTTATAAATTTTTAATGG
**
46795597 TTTTTAATAAATTTGTTTTTTATATTTTTTTAA
1 TTTTTAATAAATTTGTTTTTTATAAATTTTTAA
46795630 AAAATTATGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 1 0.03
36 28 0.97
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (36 bp):
TTTTTAATAAATTTGTTTTTTATAAATTTTTAATGG
Found at i:46795616 original size:26 final size:26
Alignment explanation
Indices: 46795587--46795647 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
46795577 TTTTTATAAA
* *
46795587 TTTTTAATGGTTTTTAATAAATT-TGT
1 TTTTTAAT-GTTTTTAAAAAATTATGG
*
46795613 TTTTTATATTTTTTTAAAAAATTATGG
1 TTTTTA-ATGTTTTTAAAAAATTATGG
46795640 TTTTTAAT
1 TTTTTAAT
46795648 TAATTTCTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (26 bp):
TTTTTAATGTTTTTAAAAAATTATGG
Found at i:46797409 original size:46 final size:46
Alignment explanation
Indices: 46797336--46797658 Score: 556
Period size: 46 Copynumber: 7.0 Consensus size: 46
46797326 ACATTGCTAT
* *
46797336 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
46797382 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
46797428 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
46797474 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
* *
46797520 AACTCAGTATGGTTTTCTTTACCGAAACACCATACCTACTTTTAAC
1 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
* *
46797566 AACTCAGTATGGTTTTCTTTACCGAAACACCACACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
* * * *
46797612 AACTTAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
46797658 A
1 A
46797659 CTTTGCCATG
Statistics
Matches: 265, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 265 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.36
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
Found at i:46805019 original size:71 final size:71
Alignment explanation
Indices: 46804789--46805045 Score: 284
Period size: 71 Copynumber: 3.6 Consensus size: 71
46804779 TCTCTCATTC
* * * * * ***
46804789 CTAATCCATGTACTTCACAAGGTTTGAACCTAAGATCTCTATCCTGGAAATC-AGTTTAACTCTC
1 CTAACCCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGA-TTTAA--CTC
*
46804853 TGTCATCCT
63 TGTCATACT
* * *
46804862 CTAACCCATGAACTTCCCAGGGTCTAAACCTAATATCTCTAAATTGGAAATGGATTTAACTCTGT
1 CTAACCCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGATTTAACTCTGT
46804927 CATACT
66 CATACT
* *
46804933 CTAACCCATGAACTTCCCAGGGTCTCAACCTAATATCTCTAAATTGGAAATCGATTTAACTCTGT
1 CTAACCCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGATTTAACTCTGT
*
46804998 CATTCT
66 CATACT
*** * * *
46805004 CTAAATTATGTACTT-CCAGGGTTTGAACCTAAGATTTCTAAA
1 CTAACCCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAA
46805046 AGTCACATCA
Statistics
Matches: 160, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
70 23 0.14
71 90 0.56
73 46 0.29
74 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (71 bp):
CTAACCCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGATTTAACTCTGT
CATACT
Found at i:46808361 original size:25 final size:27
Alignment explanation
Indices: 46808309--46808364 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
46808299 ATTTAAATTT
* *
46808309 TTTAAAAATATTTATTTTATTTTATTA
1 TTTAAAAATATTTATATAATTTTATTA
*
46808336 TTTAATAAT-TTTATATAATTTT-TTA
1 TTTAAAAATATTTATATAATTTTATTA
46808361 TTTA
1 TTTA
46808365 TTGAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 7 0.27
26 11 0.42
27 8 0.31
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTAAAAATATTTATATAATTTTATTA
Found at i:46808489 original size:18 final size:18
Alignment explanation
Indices: 46808463--46808497 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
46808453 AATATGTTCT
*
46808463 AAATTACATAATATATAA
1 AAATAACATAATATATAA
46808481 AAATAACATAATATATA
1 AAATAACATAATATATA
46808498 TAAAGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATAACATAATATATAA
Found at i:46812690 original size:15 final size:15
Alignment explanation
Indices: 46812670--46812700 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
46812660 TTTAGTGTAA
46812670 AAATATTTTAATCAT
1 AAATATTTTAATCAT
46812685 AAATATTTTAATCAT
1 AAATATTTTAATCAT
46812700 A
1 A
46812701 CTCTTGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATATTTTAATCAT
Found at i:46813227 original size:16 final size:17
Alignment explanation
Indices: 46813195--46813230 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
46813185 ATTTTTTGAA
46813195 TTAGTGAATTCTGTGAT
1 TTAGTGAATTCTGTGAT
46813212 TTAGTGAATT-TGTGAT
1 TTAGTGAATTCTGTGAT
46813228 TTA
1 TTA
46813231 AAAAGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.25, C:0.03, G:0.22, T:0.50
Consensus pattern (17 bp):
TTAGTGAATTCTGTGAT
Found at i:46813969 original size:46 final size:45
Alignment explanation
Indices: 46813902--46814030 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 45
46813892 AGGGATACAC
*
46813902 AGGTATGATGTTTCAGTGAAGAAAGCCATACTGAGTTGTGAAAAGT
1 AGGTATGGTGTTTCAGTGAAGAAA-CCATACTGAGTTGTGAAAAGT
*
46813948 AGGTATGGTGTTTCAGTGAAGAAAACCATATTGAGTTGTGAAAAGT
1 AGGTATGGTGTTTCAGTGAAG-AAACCATACTGAGTTGTGAAAAGT
* *
46813994 AGGTATGGTATTTCAATGAAGGAAACCATACTGAGTT
1 AGGTATGGTGTTTCAGTGAA-GAAACCATACTGAGTT
46814031 ATAGCATTAT
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
46 72 0.95
47 4 0.05
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (45 bp):
AGGTATGGTGTTTCAGTGAAGAAACCATACTGAGTTGTGAAAAGT
Found at i:46823284 original size:28 final size:28
Alignment explanation
Indices: 46823244--46823475 Score: 446
Period size: 28 Copynumber: 8.3 Consensus size: 28
46823234 CATGAGATTG
46823244 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46823272 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46823300 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46823328 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46823356 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46823384 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
46823412 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46823440 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46823468 GCACTAAG
1 GCACTAAG
46823476 AACATGTTTG
Statistics
Matches: 200, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 200 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:46824002 original size:5 final size:5
Alignment explanation
Indices: 46823992--46824017 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
46823982 CAACTCTCTT
46823992 TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
46824018 AACTCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:46827420 original size:18 final size:17
Alignment explanation
Indices: 46827392--46827426 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46827382 ATTATTAAGA
*
46827392 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46827409 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46827427 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46827602 original size:16 final size:16
Alignment explanation
Indices: 46827581--46827620 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
46827571 ATATATTAAA
46827581 TAACAATTACAATATT
1 TAACAATTACAATATT
*
46827597 TAACAATAACAATATT
1 TAACAATTACAATATT
*
46827613 TAATAATT
1 TAACAATT
46827621 TACCAAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.38
Consensus pattern (16 bp):
TAACAATTACAATATT
Found at i:46827680 original size:18 final size:17
Alignment explanation
Indices: 46827652--46827686 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46827642 ATTATTAAGA
*
46827652 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46827669 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46827687 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46831138 original size:21 final size:21
Alignment explanation
Indices: 46831107--46831185 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 21
46831097 AGTCAACTCA
*
46831107 TATGAGTTTCAGTTTAACCCT
1 TATGGGTTTCAGTTTAACCCT
* * * *
46831128 TCTGGGTTTCAGTTCAGCTCT
1 TATGGGTTTCAGTTTAACCCT
* * *
46831149 TGTGAGCTTCAGTTTAACCCT
1 TATGGGTTTCAGTTTAACCCT
*
46831170 AATGGGTTTCAGTTTA
1 TATGGGTTTCAGTTTA
46831186 GCTATTTTGA
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (21 bp):
TATGGGTTTCAGTTTAACCCT
Found at i:46831163 original size:42 final size:42
Alignment explanation
Indices: 46831109--46831202 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
46831099 TCAACTCATA
* ** *
46831109 TGAGTTTCAGTTTAACCCTTCTGGGTTTCAGTTCAGCTCTTG
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTCAGCTATTG
* *
46831151 TGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTTAGCTATTT
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTCAGCTATTG
46831193 TGAGCTTCAG
1 TGAGCTTCAG
46831203 ATTATAGGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.41
Consensus pattern (42 bp):
TGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTCAGCTATTG
Found at i:46831277 original size:77 final size:78
Alignment explanation
Indices: 46831134--46831279 Score: 179
Period size: 77 Copynumber: 1.9 Consensus size: 78
46831124 CCCTTCTGGG
* * * * * *
46831134 TTTCAGTTCAGCTCTTGTGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTTAGCTATTTTGAGCT
1 TTTCAGTTCAGCTCCTATGAGCTTCAGTTTAACCCTAATAGGTTTCACTATAGCTATTATGAGCT
46831199 TCAGATTATAGGT
66 TCAGATTATAGGT
* * * *
46831212 TTTC-GTTCAGCTCCTATGAGCTTCCGTTTAACCCTTATAGGTTTCCCTATAGC-ACTTATGTGC
1 TTTCAGTTCAGCTCCTATGAGCTTCAGTTTAACCCTAATAGGTTTCACTATAGCTA-TTATGAGC
46831275 TTCAG
65 TTCAG
46831280 TGCAACCTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
76 1 0.02
77 52 0.91
78 4 0.07
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.41
Consensus pattern (78 bp):
TTTCAGTTCAGCTCCTATGAGCTTCAGTTTAACCCTAATAGGTTTCACTATAGCTATTATGAGCT
TCAGATTATAGGT
Found at i:46842051 original size:18 final size:16
Alignment explanation
Indices: 46842029--46842061 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
46842019 TCATGTTTCT
46842029 ATATATATACTTTTGA
1 ATATATATACTTTTGA
46842045 ATATATATACTTTTGA
1 ATATATATACTTTTGA
46842061 A
1 A
46842062 GAATTATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
ATATATATACTTTTGA
Found at i:46848880 original size:42 final size:42
Alignment explanation
Indices: 46848824--46848923 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
46848814 CTATACGAAC
* * *
46848824 GGCACTAAGTGTGCGAAACTAAAATGACGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAACTAAAATGACAACGTTGAATAACA
* *
46848866 GGCACTAAGTGTGCGAAATTGAAATGACAACGTTGAATAACA
1 GGCACTAAGTGTGCGAAACTAAAATGACAACGTTGAATAACA
*
46848908 AGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
46848924 TACCGAGAGC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACTAAAATGACAACGTTGAATAACA
Found at i:46851102 original size:32 final size:33
Alignment explanation
Indices: 46851031--46851103 Score: 105
Period size: 33 Copynumber: 2.2 Consensus size: 33
46851021 AAATGAGTAC
46851031 ATTTGTATTATTTATATATAATTAGTAAAAAGAT
1 ATTT-TATTATTTATATATAATTAGTAAAAAGAT
46851065 ATTTTATTATTTAT-TACTAATTAGT-AAAAGAT
1 ATTTTATTATTTATATA-TAATTAGTAAAAAGAT
*
46851097 TTTTTAT
1 ATTTTAT
46851104 GATAAATAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
32 15 0.41
33 18 0.49
34 4 0.11
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (33 bp):
ATTTTATTATTTATATATAATTAGTAAAAAGAT
Found at i:46851447 original size:25 final size:25
Alignment explanation
Indices: 46851413--46851463 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
46851403 GAAGCATAAT
* *
46851413 AGAAACGAAACAGGGAGAA-AAAGAA
1 AGAAAAGAAAAAGGGA-AAGAAAGAA
46851438 AGAAAAGAAAAAGGGAAAGAAAGAA
1 AGAAAAGAAAAAGGGAAAGAAAGAA
46851463 A
1 A
46851464 CGAGAAATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.69, C:0.04, G:0.27, T:0.00
Consensus pattern (25 bp):
AGAAAAGAAAAAGGGAAAGAAAGAA
Found at i:46852437 original size:38 final size:39
Alignment explanation
Indices: 46852337--46852467 Score: 115
Period size: 38 Copynumber: 3.4 Consensus size: 39
46852327 CCTCGAGTCT
* ***
46852337 ATGAGACACTGGGTGTCACTATTTTACTTCGGATAGATTTG
1 ATGAGACACTGGGTGTCA--ACTTTACTTCGGATAGAGCCG
* * *
46852378 ATGAGATACTGGGTATC-ACTTTACTTCGGCTAG-GCCG
1 ATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGCCG
* * * *
46852415 ATGAGACACTGGGTGTCAACTTTGCTTCGAAT-TATCCG
1 ATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGCCG
*
46852453 ATGAGGCACTGGGTG
1 ATGAGACACTGGGTG
46852468 CCAATCTGGT
Statistics
Matches: 73, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
37 16 0.22
38 42 0.58
41 15 0.21
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (39 bp):
ATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGCCG
Found at i:46860071 original size:20 final size:20
Alignment explanation
Indices: 46860046--46860109 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
46860036 GCATTATTTA
46860046 TTTAGGGTTTAGGATTCAAG
1 TTTAGGGTTTAGGATTCAAG
* *
46860066 TTTAGGGTTTAGGACTCTAG
1 TTTAGGGTTTAGGATTCAAG
* *
46860086 TTTGGGGTTTAAGG-TTTAAG
1 TTTAGGGTTT-AGGATTCAAG
46860106 TTTA
1 TTTA
46860110 AGATTTGAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 33 0.92
21 3 0.08
ACGTcount: A:0.22, C:0.05, G:0.30, T:0.44
Consensus pattern (20 bp):
TTTAGGGTTTAGGATTCAAG
Found at i:46866523 original size:29 final size:30
Alignment explanation
Indices: 46866464--46866521 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
46866454 TCCGAGCCTT
*
46866464 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
46866494 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
46866522 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:46867029 original size:29 final size:29
Alignment explanation
Indices: 46866970--46867029 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
46866960 AAAGAGCCTT
46866970 GGGGCAAAAATGTAATTATGCAAAAGTTTA
1 GGGGCAAAAATGTAATTATGCAAAAG-TTA
* *
46867000 GGGGCAAAATTGTAATTGTGACAAAA-TTA
1 GGGGCAAAAATGTAATTATG-CAAAAGTTA
46867029 G
1 G
46867030 AGTCGAGGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 4 0.15
30 18 0.67
31 5 0.19
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.27
Consensus pattern (29 bp):
GGGGCAAAAATGTAATTATGCAAAAGTTA
Found at i:46876796 original size:16 final size:16
Alignment explanation
Indices: 46876772--46876809 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
46876762 ACTTGTATAT
*
46876772 AACTGATTCTGCTAAC
1 AACTAATTCTGCTAAC
46876788 AACTAATTCTGCTAAC
1 AACTAATTCTGCTAAC
*
46876804 TACTAA
1 AACTAA
46876810 CTGTCTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (16 bp):
AACTAATTCTGCTAAC
Found at i:46881340 original size:16 final size:16
Alignment explanation
Indices: 46881316--46881353 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
46881306 ACTTGTATAT
*
46881316 AACTGATTCTGCTAAC
1 AACTAATTCTGCTAAC
46881332 AACTAATTCTGCTAAC
1 AACTAATTCTGCTAAC
*
46881348 TACTAA
1 AACTAA
46881354 CTGTCTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (16 bp):
AACTAATTCTGCTAAC
Found at i:46882434 original size:22 final size:22
Alignment explanation
Indices: 46882396--46882437 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
46882386 TTAAAAAATA
46882396 TATTTTAAAAATGATTTTATGT
1 TATTTTAAAAATGATTTTATGT
*
46882418 TATTTATAAATAT-ATTTTAT
1 TATTT-TAAAAATGATTTTAT
46882438 TTAAAAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
TATTTTAAAAATGATTTTATGT
Found at i:46882612 original size:26 final size:28
Alignment explanation
Indices: 46882567--46882624 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 28
46882557 AATTTTAAAA
46882567 ATTTAAATATAAAAGAAAAATT-TTATT
1 ATTTAAATATAAAAGAAAAATTATTATT
* *
46882594 ATTTAATTA-AAAAGTAAAATTATTATT
1 ATTTAAATATAAAAGAAAAATTATTATT
46882621 -TTTA
1 ATTTA
46882625 GTAATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (28 bp):
ATTTAAATATAAAAGAAAAATTATTATT
Found at i:46883902 original size:13 final size:13
Alignment explanation
Indices: 46883884--46883914 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
46883874 ATTTAAACGT
46883884 ACACAATACCAAA
1 ACACAATACCAAA
46883897 ACACAATACCAAA
1 ACACAATACCAAA
46883910 ACACA
1 ACACA
46883915 TTCTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.06
Consensus pattern (13 bp):
ACACAATACCAAA
Found at i:46884501 original size:46 final size:46
Alignment explanation
Indices: 46884428--46884604 Score: 257
Period size: 46 Copynumber: 3.8 Consensus size: 46
46884418 ACAAGGCTAT
*
46884428 AACTCAGTATGATTTTCTTCACAGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
* *
46884474 GACTCAGTATGGTTTTCTTTATC-GAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCA-CAGAAATACCATACCTACTTTTCAC
* *
46884520 AACTCAGTATGGTTTTCTTTACCGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
* * * *
46884566 AACTTAGTATCGTTTTCTTCACTGGAATACCATACCTAC
1 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTAC
46884605 GCTTCAAACT
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
45 1 0.01
46 118 0.98
47 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
Found at i:46885386 original size:17 final size:17
Alignment explanation
Indices: 46885364--46885407 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
46885354 CTTTTTTAAA
46885364 TCACAAAATTCAATAAG
1 TCACAAAATTCAATAAG
* * *
46885381 TCACAAAATCCACTAAT
1 TCACAAAATTCAATAAG
46885398 TCA-AAAATTC
1 TCACAAAATTC
46885408 TTCTAAATCG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.50, C:0.23, G:0.02, T:0.25
Consensus pattern (17 bp):
TCACAAAATTCAATAAG
Found at i:46886640 original size:31 final size:30
Alignment explanation
Indices: 46886604--46886676 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
46886594 GTTTGAGTTA
*
46886604 GGACTAAAATTTCAA-AATTCGAAATGTACAT
1 GGACT-AAATTT-AACAATTCGAAAAGTACAT
46886635 GGACTAAATTTAACCAATTCGAAAAGTACAT
1 GGACTAAATTTAA-CAATTCGAAAAGTACAT
* *
46886666 GAATTAAATTT
1 GGACTAAATTT
46886677 GATCAAATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 2 0.05
30 6 0.16
31 29 0.78
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (30 bp):
GGACTAAATTTAACAATTCGAAAAGTACAT
Found at i:46895726 original size:11 final size:11
Alignment explanation
Indices: 46895707--46895761 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
46895697 CTCTAATATT
46895707 CTCTCAAATTC
1 CTCTCAAATTC
*
46895718 CTCTAAAATTC
1 CTCTCAAATTC
* * *
46895729 CCCTCAATTTA
1 CTCTCAAATTC
*
46895740 CTCTCAAATTT
1 CTCTCAAATTC
46895751 CTCTCAAATTC
1 CTCTCAAATTC
46895762 TTATTTACAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:46895756 original size:22 final size:22
Alignment explanation
Indices: 46895696--46895760 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
46895686 CTAAATCCTT
* *
46895696 TCTCTAATATTCTCTCAAATTCC
1 TCTCAAAT-TTCTCTCAAATTAC
* * * *
46895719 TCTAAAATTCCCCTCAATTTAC
1 TCTCAAATTTCTCTCAAATTAC
46895741 TCTCAAATTTCTCTCAAATT
1 TCTCAAATTTCTCTCAAATT
46895761 CTTATTTACA
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
22 26 0.81
23 6 0.19
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (22 bp):
TCTCAAATTTCTCTCAAATTAC
Found at i:46896951 original size:7 final size:7
Alignment explanation
Indices: 46896941--46896965 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46896931 TTGGTATTTA
46896941 GTATTAT
1 GTATTAT
46896948 GTATTAT
1 GTATTAT
46896955 GTATTAT
1 GTATTAT
46896962 GTAT
1 GTAT
46896966 ATAACTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:46897630 original size:18 final size:18
Alignment explanation
Indices: 46897607--46897649 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
46897597 TGCCAGGTGC
* *
46897607 GTATCCTAACTCTTTTAT
1 GTATCCTAACCCTTATAT
46897625 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
46897643 GTTTCCT
1 GTATCCT
46897650 TTTCCGAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:46899003 original size:44 final size:44
Alignment explanation
Indices: 46898953--46899037 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
46898943 CAGGCCATGC
**
46898953 GCTACTGTAGCAAAAGCGTATCCATGTGGGAGCCTT-TTTCAGAG
1 GCTACTGTAGCAAAAGCACATCCATGTGGGAG-CTTCTTTCAGAG
*
46898997 GCTACTGTAGCAAAAGCACGTCCATGTGGGAGCTTCTTTCA
1 GCTACTGTAGCAAAAGCACATCCATGTGGGAGCTTCTTTCA
46899038 ATACTTCTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (44 bp):
GCTACTGTAGCAAAAGCACATCCATGTGGGAGCTTCTTTCAGAG
Found at i:46899209 original size:125 final size:126
Alignment explanation
Indices: 46898987--46899284 Score: 427
Period size: 125 Copynumber: 2.4 Consensus size: 126
46898977 TGTGGGAGCC
* *
46898987 TTTTTCAGAGGCTACTGTAGCAAAAGCACGTCCATGTGGGAGCTTCTTTCAATACTTCTGCTGAC
1 TTTTTCAGGGGCTACTGTAGCAAAAGCACGTCCACGTGGGAGCTTCTTTCAATACTTCTGCTGAC
* * *
46899052 AAAGCATCCTGCTTAAAGTGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA-
66 AAAGCATCATGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCAAAATTAT
* * *
46899112 TTTTTCAGGGGATACTGTAGCAAAAGCACGTCCACGTGGGAGCTTCTTTTAGTACTTCTGCTGAC
1 TTTTTCAGGGGCTACTGTAGCAAAAGCACGTCCACGTGGGAGCTTCTTTCAATACTTCTGCTGAC
* * * *
46899177 AAAGCATCATTCTTAAAGCGTTTTTTACACTGTTTGCTTAGAAGCGTCTACTCAAAATTAT
66 AAAGCATCATGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCAAAATTAT
* ** * * *
46899238 TTTTTTAGGACCTACTGTAGCAAAAGCGCGACCACGTGAGAGCTTCT
1 TTTTTCAGGGGCTACTGTAGCAAAAGCACGTCCACGTGGGAGCTTCT
46899285 CTAAATTAAT
Statistics
Matches: 153, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
125 113 0.74
126 40 0.26
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (126 bp):
TTTTTCAGGGGCTACTGTAGCAAAAGCACGTCCACGTGGGAGCTTCTTTCAATACTTCTGCTGAC
AAAGCATCATGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCAAAATTAT
Found at i:46899470 original size:96 final size:95
Alignment explanation
Indices: 46899320--46899549 Score: 273
Period size: 95 Copynumber: 2.4 Consensus size: 95
46899310 AGTAACCCTA
* * *
46899320 AACCCCAAACACTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACAAAACCCTTA-ACTAA
1 AACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACAAAACCCTCATA-TAA
* *
46899384 TTTATTAAAAATTTATAATTAATTTACTCAAGT
64 TGT-TTAAAAATTTATAATTAAATTACTCAAGT
* * * * * * *
46899417 AACTCTAAACCCTAATTTATTTGATTTTTCCTTAAAACCCCTTAACTCTAAACCCTCATATGATG
1 AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACAAAACCCTCATATAATG
* *
46899482 TTTAAAATTTTTTAATTAAATTACTCAAGT
66 TTTAAAAATTTATAATTAAATTACTCAAGT
* * *
46899512 AACCCTAAACCTTAATTTAATTGATTTTTTCTTAAAAA
1 AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAA
46899550 ATAATAAACA
Statistics
Matches: 113, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
95 59 0.52
96 32 0.28
97 22 0.19
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.39
Consensus pattern (95 bp):
AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACAAAACCCTCATATAATG
TTTAAAAATTTATAATTAAATTACTCAAGT
Found at i:46899593 original size:95 final size:95
Alignment explanation
Indices: 46899320--46899593 Score: 221
Period size: 95 Copynumber: 2.9 Consensus size: 95
46899310 AGTAACCCTA
* * * * ** * * *
46899320 AACCCCAAACACTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACAAAACCCTTA-ACTAA
1 AACCCTAAACCCTAATTTAATTGA-TTTTTCCTTAAAAACAATAAACACGAAACACTAATAC-AA
* *
46899384 TTTATTAAAAATTTATAATTAATTTACTCAAGT
64 TGT-TTAAAAATTTATAATTAAATTACTCAAGT
* * * ** * * * * * **
46899417 AACTCTAAACCCTAATTTATTTGATTTTTCCTTAAAACCCCTTAACTCTAAACCCTCATATGATG
1 AACCCTAAACCCTAATTTAATTGATTTTTCCTTAAAAACAATAAACACGAAACACTAATACAATG
* *
46899482 TTTAAAATTTTTTAATTAAATTACTCAAGT
66 TTTAAAAATTTATAATTAAATTACTCAAGT
* * * *
46899512 AACCCTAAACCTTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAA-ACTAATCCAAT
1 AACCCTAAACCCTAATTTAATTGATTTTTCCTT-AAAAACAATAAACACGAAACACTAATACAAT
46899576 -TTTAAAAAATTTATAATT
65 GTTT-AAAAATTTATAATT
46899594 CATTTAATTG
Statistics
Matches: 141, Mismatches: 33, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
94 3 0.02
95 73 0.52
96 43 0.30
97 22 0.16
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.38
Consensus pattern (95 bp):
AACCCTAAACCCTAATTTAATTGATTTTTCCTTAAAAACAATAAACACGAAACACTAATACAATG
TTTAAAAATTTATAATTAAATTACTCAAGT
Found at i:46906600 original size:18 final size:17
Alignment explanation
Indices: 46906587--46906623 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
46906577 TCATTATTAT
46906587 TATTAGTATTATTATTTA
1 TATTAGT-TTATTATTTA
46906605 TATTAGTTTATATATTTA
1 TATTAGTTTAT-TATTTA
46906623 T
1 T
46906624 CTACATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
TATTAGTTTATTATTTA
Found at i:46916189 original size:124 final size:121
Alignment explanation
Indices: 46915962--46916198 Score: 366
Period size: 124 Copynumber: 1.9 Consensus size: 121
46915952 TATGTGGGCT
* *
46915962 TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGATGTATGCGTTGGCTCCTTGAAGTTTTT
1 TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGATGTATGCGTTGGCTCCTTCAAGTTTTC
*
46916027 AATTTCTACATGCCTATGGGCTTTCTTAAATAAAGTTGATAATTTTTCAATTTCTA
66 AATTTCTACATGCCTATGGGCCTTCTTAAATAAAGTTGATAATTTTTCAATTTCTA
* * * * *
46916083 TTGTAACTTCATGACAAAGGTTTCAAATAAGACTTTGATGGTTGTGTGTTGGCTTCTTCAAGATT
1 TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGAT-G-TATGCGTTGGCTCCTTCAAG-TT
*
46916148 TTCAATTTCTACATGCCTATGGGCCTTCTTAAATAAAGTTGATAGTTTTTC
63 TTCAATTTCTACATGCCTATGGGCCTTCTTAAATAAAGTTGATAATTTTTC
46916199 TAGTTGGTCA
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
121 37 0.36
122 1 0.01
123 16 0.15
124 50 0.48
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.41
Consensus pattern (121 bp):
TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGATGTATGCGTTGGCTCCTTCAAGTTTTC
AATTTCTACATGCCTATGGGCCTTCTTAAATAAAGTTGATAATTTTTCAATTTCTA
Found at i:46917718 original size:60 final size:60
Alignment explanation
Indices: 46917625--46917747 Score: 219
Period size: 60 Copynumber: 2.0 Consensus size: 60
46917615 GGTATATAGA
*
46917625 TGGGTTGCCTCCCCCACCTATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
1 TGGGTTGCCTCCCCCACCCATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
* *
46917685 TGGGTTGCCTCCCCCACCCATGCCATTTGGAAGTTTTTAATAGGCCTATCTATAATTCAT
1 TGGGTTGCCTCCCCCACCCATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
46917745 TGG
1 TGG
46917748 TCTTTTGTTA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (60 bp):
TGGGTTGCCTCCCCCACCCATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
Found at i:46928747 original size:17 final size:18
Alignment explanation
Indices: 46928711--46928749 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
46928701 TAGCAAAAGT
**
46928711 AAGACTAAAAACTTGTAC
1 AAGACTAAAAACTTCCAC
46928729 AAGAC-AAAAACTTCCAC
1 AAGACTAAAAACTTCCAC
46928746 AAGA
1 AAGA
46928750 GAAGACTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.54, C:0.21, G:0.10, T:0.15
Consensus pattern (18 bp):
AAGACTAAAAACTTCCAC
Found at i:46931050 original size:33 final size:32
Alignment explanation
Indices: 46930975--46931054 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 32
46930965 GGCAATGTTT
* *
46930975 AAATGTAAGACCATAGCTGGGCTATGGCATTC
1 AAATGTAAGACCATAACTGGGCTATGGCATAC
**
46931007 TGATGATAAGACCATAACTGGG-TCATGGCACTAC
1 AAATG-TAAGACCATAACTGGGCT-ATGGCA-TAC
46931041 AAATGTAAGACCAT
1 AAATGTAAGACCAT
46931055 GGCAATGCCA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 4 0.10
33 30 0.77
34 5 0.13
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (32 bp):
AAATGTAAGACCATAACTGGGCTATGGCATAC
Found at i:46932646 original size:27 final size:25
Alignment explanation
Indices: 46932596--46932662 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 25
46932586 AAAATCTACG
*
46932596 ATATTAATATTGAAAATATATTAAA
1 ATATTAATATTAAAAATATATTAAA
* *
46932621 ATATTAATAAATTAAAAATATGTTAAG
1 ATATTAAT--ATTAAAAATATATTAAA
*
46932648 TTATTTAATATTAAA
1 ATA-TTAATATTAAA
46932663 TTAAAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 8 0.23
26 6 0.17
27 16 0.46
28 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
ATATTAATATTAAAAATATATTAAA
Found at i:46932830 original size:26 final size:26
Alignment explanation
Indices: 46932801--46932858 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
46932791 TTGATTGCAG
* * *
46932801 TAATTGGTTTGATCAA-TTAATTCTAT
1 TAATTGATTTGACCAACTGAATT-TAT
46932827 TAATTGATTTGACCAACTGAATTTAT
1 TAATTGATTTGACCAACTGAATTTAT
46932853 TAATTG
1 TAATTG
46932859 TTTATTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (26 bp):
TAATTGATTTGACCAACTGAATTTAT
Found at i:46935377 original size:6 final size:6
Alignment explanation
Indices: 46935366--46935395 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
46935356 AAAAATTGTG
46935366 ATAATT ATAATT ATAATT ATAATTT ATAAT
1 ATAATT ATAATT ATAATT ATAA-TT ATAAT
46935396 GATTAGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:46935751 original size:8 final size:8
Alignment explanation
Indices: 46935740--46935764 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
46935730 ACAATGACGA
46935740 TATGATTT
1 TATGATTT
46935748 TATGATTT
1 TATGATTT
46935756 TATGATTT
1 TATGATTT
46935764 T
1 T
46935765 TTTTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (8 bp):
TATGATTT
Found at i:46941646 original size:20 final size:21
Alignment explanation
Indices: 46941608--46941646 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
46941598 TGATAATAGT
* *
46941608 TAAAATTAATTATTGTTTAAA
1 TAAAATTAATTAGTATTTAAA
46941629 TAAAATT-ATTAGTATTTA
1 TAAAATTAATTAGTATTTA
46941647 TATTTAAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (21 bp):
TAAAATTAATTAGTATTTAAA
Found at i:46946184 original size:16 final size:16
Alignment explanation
Indices: 46946145--46946193 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
46946135 TATATTCGGT
* *
46946145 GATTTTGTTATTTTAC
1 GATTTTATTATTTTAA
46946161 GAATTTTATTATTTTAA
1 G-ATTTTATTATTTTAA
*
46946178 GATTTTATCATTTTAA
1 GATTTTATTATTTTAA
46946194 AATATTGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (16 bp):
GATTTTATTATTTTAA
Found at i:46948436 original size:12 final size:12
Alignment explanation
Indices: 46948419--46948444 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46948409 ATCACTAATT
46948419 TGACCGTAGCCA
1 TGACCGTAGCCA
46948431 TGACCGTAGCCA
1 TGACCGTAGCCA
46948443 TG
1 TG
46948445 GCCGATGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (12 bp):
TGACCGTAGCCA
Found at i:46955341 original size:15 final size:14
Alignment explanation
Indices: 46955321--46955377 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 14
46955311 TTATGGAAAG
46955321 TCAAATATCTGGGTA
1 TCAAATAT-TGGGTA
**
46955336 TCAAATATTGGAAA
1 TCAAATATTGGGTA
*
46955350 GTCAAAGATATGGGTA
1 -TCAAATAT-TGGGTA
46955366 TCGAAATATTGG
1 TC-AAATATTGG
46955378 CATAAGAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
14 4 0.12
15 20 0.61
16 9 0.27
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (14 bp):
TCAAATATTGGGTA
Found at i:46955348 original size:30 final size:31
Alignment explanation
Indices: 46955314--46955377 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
46955304 ATCCATATTA
* *
46955314 TGGAAAGTCAAATATCTGGGTATC-AAATAT
1 TGGAAAGTCAAAGATATGGGTATCGAAATAT
46955344 TGGAAAGTCAAAGATATGGGTATCGAAATAT
1 TGGAAAGTCAAAGATATGGGTATCGAAATAT
46955375 TGG
1 TGG
46955378 CATAAGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (31 bp):
TGGAAAGTCAAAGATATGGGTATCGAAATAT
Found at i:46957385 original size:4 final size:4
Alignment explanation
Indices: 46957376--46957403 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
46957366 ACGTAATATC
46957376 GTTA GTTA GTTA GTTA GTTA GTTA GTTA
1 GTTA GTTA GTTA GTTA GTTA GTTA GTTA
46957404 AAATAGTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTTA
Found at i:46958594 original size:85 final size:85
Alignment explanation
Indices: 46958451--46958706 Score: 341
Period size: 85 Copynumber: 3.0 Consensus size: 85
46958441 ACCACAGCTG
* * * *
46958451 ATTTATAGTTACTGCCACGTGTTGTGGGTGCACAATATATTTGCAAATTAAACAAACTGCCACTT
1 ATTTATAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
*
46958516 GGTTCATGATCGAACCACAT
66 GGTTCATAATCGAACCACAT
* * **
46958536 ATTTATAGTTACTTCCACTTGCTGTGAGTATACAACATATTTGCAGATTAAACAAACTGCCACTT
1 ATTTATAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
*
46958601 GGTTCATTATCGAACCACACT
66 GGTTCATAATCGAACCACA-T
** ** * **
46958622 ATTTGCAGTTACTGCTGCTTGTTGTGAGTGCACAACATATTTGCAGACTAAACAAACTAACACTT
1 ATTTATAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
*
46958687 GGTTCATAATCGAATCACAT
66 GGTTCATAATCGAACCACAT
46958707 TGTTTGCAGA
Statistics
Matches: 148, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
85 76 0.51
86 72 0.49
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (85 bp):
ATTTATAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
GGTTCATAATCGAACCACAT
Found at i:46958674 original size:86 final size:85
Alignment explanation
Indices: 46958457--46958715 Score: 329
Period size: 86 Copynumber: 3.0 Consensus size: 85
46958447 GCTGATTTAT
* * * *
46958457 AGTTACTGCCACGTGTTGTGGGTGCACAATATATTTGCAAATTAAACAAACTGCCACTTGGTTCA
1 AGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
* **
46958522 TGATCGAACCACATATTTAT
66 TAATCGAACCACATATTTGC
* * **
46958542 AGTTACTTCCACTTGCTGTGAGTATACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
1 AGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
*
46958607 TTATCGAACCACACTATTTGC
66 TAATCGAACCACA-TATTTGC
** * **
46958628 AGTTACTGCTGCTTGTTGTGAGTGCACAACATATTTGCAGACTAAACAAACTAACACTTGGTTCA
1 AGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
* *
46958693 TAATCGAATCACATTGTTTGC
66 TAATCGAACCACA-TATTTGC
46958714 AG
1 AG
46958716 ATTAAACTAT
Statistics
Matches: 149, Mismatches: 24, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
85 69 0.46
86 80 0.54
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (85 bp):
AGTTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
TAATCGAACCACATATTTGC
Found at i:46959245 original size:29 final size:27
Alignment explanation
Indices: 46959204--46959534 Score: 213
Period size: 28 Copynumber: 11.7 Consensus size: 27
46959194 TTCAAAATTG
*
46959204 TAAAATTTGAAAATCAGGGGAAAAACTA
1 TAAAATTTAAAAAT-AGGGGAAAAACTA
*
46959232 TAAAATCTTAAAAATA-GGGAAAAA-TG
1 TAAAAT-TTAAAAATAGGGGAAAAACTA
* *
46959258 TAAAATCTAAAAAATA-AGGACAAAACTA
1 TAAAAT-TTAAAAATAGGGGA-AAAACTA
* * *
46959286 TAAAATTTAAAAAATATGGGCAAAGCTA
1 TAAAATTT-AAAAATAGGGGAAAAACTA
* * *
46959314 TAAAATCTAGAAAATAGAGG-CAAACTA
1 TAAAATTTA-AAAATAGGGGAAAAACTA
* * * *
46959341 TAATATCTGAAAAATAGGGGACAAAATTG
1 TAAAAT-TTAAAAATAGGGGA-AAAACTA
* * ** * *
46959370 TAAAATATGAAAAACAAAGGCAAAACTG
1 TAAAAT-TTAAAAATAGGGGAAAAACTA
* * * *
46959398 TAAGATTTGGGAAAATAGGGGACAAAATTG
1 TAAAATTT--AAAAATAGGGGA-AAAACTA
*
46959428 TAAAATTTGAAGAAATAGGGGCAAAAATTA
1 TAAAATTT-AA-AAATAGGGG-AAAAACTA
46959458 -AAAATTTGAAAAATAGGGGATAAAACTA
1 TAAAATTT-AAAAATAGGGGA-AAAACTA
*
46959486 TAAAATTTGAAAAATAGGGGCAAAACTA
1 TAAAATTT-AAAAATAGGGGAAAAACTA
*
46959514 TAAAATTTGGAAAATAGGGGA
1 TAAAATTT-AAAAATAGGGGA
46959535 CACACGGTCG
Statistics
Matches: 244, Mismatches: 43, Indels: 32
0.76 0.13 0.10
Matches are distributed among these distances:
26 19 0.08
27 35 0.14
28 95 0.39
29 66 0.27
30 28 0.11
31 1 0.00
ACGTcount: A:0.54, C:0.06, G:0.18, T:0.21
Consensus pattern (27 bp):
TAAAATTTAAAAATAGGGGAAAAACTA
Found at i:46959421 original size:58 final size:56
Alignment explanation
Indices: 46959196--46959536 Score: 284
Period size: 58 Copynumber: 6.0 Consensus size: 56
46959186 AATTTTGGTT
* *
46959196 CAAAATTGTAAAATTTG-AAAATCAGGGGAAAAACTATAAAATCTT-AAAAATA-GGGA
1 CAAAATTGTAAAATTTGAAAAAT-AGGGGCAAAACT-TAAAAT-TTGGAAAATAGGGGA
* * * * ** *
46959252 -AAAA-TGTAAAATCTAAAAAATAAGGACAAAACTATAAAATTTAAAAAATATGGG-
1 CAAAATTGTAAAATTTGAAAAATAGGGGCAAAACT-TAAAATTTGGAAAATAGGGGA
** * * * * * *
46959306 CAAAGCTATAAAATCT-AGAAAATAGAGGC-AAACTATAATATCTGAAAAATAGGGGA
1 CAAAATTGTAAAATTTGA-AAAATAGGGGCAAAACT-TAAAATTTGGAAAATAGGGGA
* * ** *
46959362 CAAAATTGTAAAATATGAAAAACAAAGGCAAAACTGTAAGATTTGGGAAAATAGGGGA
1 CAAAATTGTAAAATTTGAAAAATAGGGGCAAAACT-TAAAATTT-GGAAAATAGGGGA
* *
46959420 CAAAATTGTAAAATTTGAAGAAATAGGGGCAAAAATTAAAAATTTGAAAAATAGGGGA
1 CAAAATTGTAAAATTTGAA-AAATAGGGGCAAAACTT-AAAATTTGGAAAATAGGGGA
* * *
46959478 TAAAACTATAAAATTTGAAAAATAGGGGCAAAACTATAAAATTTGGAAAATAGGGGA
1 CAAAATTGTAAAATTTGAAAAATAGGGGCAAAACT-TAAAATTTGGAAAATAGGGGA
46959535 CA
1 CA
46959537 CACGGTCGTG
Statistics
Matches: 235, Mismatches: 37, Indels: 25
0.79 0.12 0.08
Matches are distributed among these distances:
53 2 0.01
54 32 0.14
55 38 0.16
56 38 0.16
57 47 0.20
58 60 0.26
59 18 0.08
ACGTcount: A:0.54, C:0.07, G:0.18, T:0.21
Consensus pattern (56 bp):
CAAAATTGTAAAATTTGAAAAATAGGGGCAAAACTTAAAATTTGGAAAATAGGGGA
Found at i:46960237 original size:24 final size:24
Alignment explanation
Indices: 46960209--46960266 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
46960199 AAAACCCTTC
*
46960209 TAAAAGAAACTGAAGAGAAATTCT
1 TAAAAGAAACTCAAGAGAAATTCT
*
46960233 TAAAAAAAACTCAAGAGAAATTCT
1 TAAAAGAAACTCAAGAGAAATTCT
46960257 TAAAAAGAAA
1 T-AAAAGAAA
46960267 AACCCAGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.77
25 7 0.23
ACGTcount: A:0.60, C:0.09, G:0.12, T:0.19
Consensus pattern (24 bp):
TAAAAGAAACTCAAGAGAAATTCT
Found at i:46964107 original size:13 final size:14
Alignment explanation
Indices: 46964089--46964137 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 14
46964079 AAGTCAGATA
*
46964089 AAATAATTAAACT-
1 AAATAATTAAAATC
*
46964102 AAATAACTAAAATC
1 AAATAATTAAAATC
46964116 AAATAA-T-AAATC
1 AAATAATTAAAATC
46964128 AAAT-ATTAAA
1 AAATAATTAAA
46964138 GAAGAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 1 0.03
12 10 0.32
13 14 0.45
14 6 0.19
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATAATTAAAATC
Found at i:46964819 original size:31 final size:31
Alignment explanation
Indices: 46964781--46964855 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
46964771 TAAATCGCAG
46964781 AAGTGAGAAAAGTTTTGTTGCCCAAGAGTAA
1 AAGTGAGAAAAGTTTTGTTGCCCAAGAGTAA
*
46964812 AAGTGAGAAAAATTTTGTTGCCCAAGAGTAA
1 AAGTGAGAAAAGTTTTGTTGCCCAAGAGTAA
46964843 ATA-TGA-AAAAGTT
1 A-AGTGAGAAAAGTT
46964856 GAAGGACCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 6 0.15
31 34 0.83
32 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.27
Consensus pattern (31 bp):
AAGTGAGAAAAGTTTTGTTGCCCAAGAGTAA
Found at i:46965596 original size:24 final size:24
Alignment explanation
Indices: 46965556--46965602 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
46965546 AAAAGGAAAT
*
46965556 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
46965580 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
46965603 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:46970208 original size:24 final size:25
Alignment explanation
Indices: 46970181--46970227 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
46970171 AGAGGAAAGT
46970181 TTAAAGAACATAAAA-GAAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAAA
** *
46970205 TTAAATTACTTAAAACGAAAAAA
1 TTAAAGAACATAAAACGAAAAAA
46970228 TATGGGGATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.19
Consensus pattern (25 bp):
TTAAAGAACATAAAACGAAAAAAAA
Found at i:46970796 original size:19 final size:18
Alignment explanation
Indices: 46970769--46970807 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
46970759 ATCTGTATAC
*
46970769 AATTTTTTAATATATTTT
1 AATTTTTTAATATAATTT
*
46970787 AATTTATTTATTATAATTT
1 AATTT-TTTAATATAATTT
46970806 AA
1 AA
46970808 AATAGACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
AATTTTTTAATATAATTT
Found at i:46971815 original size:23 final size:22
Alignment explanation
Indices: 46971784--46971844 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 22
46971774 CCCGGCCCGG
* *
46971784 TTTTAATTAAAATTAAAATTATA
1 TTTTTATTAAAATTAAAACTA-A
46971807 TTTTTATTAAAATTAAAACTAA
1 TTTTTATTAAAATTAAAACTAA
*
46971829 TTGTTATTAAAATTAA
1 TTTTTATTAAAATTAA
46971845 TTGTTATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTATTAAAATTAAAACTAA
Found at i:46971838 original size:22 final size:23
Alignment explanation
Indices: 46971789--46971844 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 23
46971779 CCCGGTTTTA
* *
46971789 ATTAAAATTAAAATTATATTTTT
1 ATTAAAATTAAAACTATATTGTT
46971812 ATTAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
46971834 ATTAAAATTAA
1 ATTAAAATTAA
46971845 TTGTTATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 16 0.52
23 15 0.48
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:46971839 original size:16 final size:16
Alignment explanation
Indices: 46971818--46971874 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
46971808 TTTTATTAAA
*
46971818 ATTAAAACTAATTGTT
1 ATTAAAATTAATTGTT
46971834 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGTT
*
46971850 ATCAAAATTAATTGTT
1 ATTAAAATTAATTGTT
46971866 ATTAAAATT
1 ATTAAAATT
46971875 GTATCAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (16 bp):
ATTAAAATTAATTGTT
Found at i:46972040 original size:33 final size:34
Alignment explanation
Indices: 46971998--46972071 Score: 105
Period size: 33 Copynumber: 2.2 Consensus size: 34
46971988 TCAAATTATT
*
46971998 AATTATTAATTGTTACTAATATT-TTGTTAGTAA
1 AATTATTAATTGTTAATAATATTATTGTTAGTAA
**
46972031 AATTATTAATTGTTAATTGTATTAATTGTTAGTAA
1 AATTATTAATTGTTAATAATATT-ATTGTTAGTAA
46972066 AATTAT
1 AATTAT
46972072 CAAATTATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 20 0.56
35 16 0.44
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.51
Consensus pattern (34 bp):
AATTATTAATTGTTAATAATATTATTGTTAGTAA
Found at i:46972463 original size:9 final size:9
Alignment explanation
Indices: 46972446--46972481 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
46972436 ACTGAAGAAA
*
46972446 CATCATCCT
1 CATCGTCCT
46972455 CATCGTCCT
1 CATCGTCCT
*
46972464 CATCGTCGT
1 CATCGTCCT
46972473 CATCGTCCT
1 CATCGTCCT
46972482 TTTTGCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.14, C:0.42, G:0.11, T:0.33
Consensus pattern (9 bp):
CATCGTCCT
Found at i:46980238 original size:18 final size:18
Alignment explanation
Indices: 46980215--46980257 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
46980205 TATAAATGCC
46980215 ATATTTCAAAA-AAGGAAA
1 ATATTTCAAAATAAGG-AA
* *
46980233 ATATTTTAAAATAAGGCA
1 ATATTTCAAAATAAGGAA
46980251 ATATTTC
1 ATATTTC
46980258 GCGTTTGGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (18 bp):
ATATTTCAAAATAAGGAA
Found at i:46985602 original size:103 final size:102
Alignment explanation
Indices: 46985475--46985664 Score: 283
Period size: 103 Copynumber: 1.9 Consensus size: 102
46985465 ATGAATTTCG
* * * * * *
46985475 ACTACCCATTCAATTCTACACTCTACATAATTCTAAGGTATCATTATTTTTATTTAAGA-TAATT
1 ACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTATATCTAAGATTAA-T
46985539 AAATATATATATATTCATGTATTTATCAATGAATTTATT
65 AAA-ATATATATATTCATGTATTTATCAATGAATTTATT
* *
46985578 ACTACCCATCCAATTATACGCTCTACATAATCCTAAGGTACCATTATTTATATCTAAGATTAATC
1 ACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTATATCTAAGATTAATA
46985643 AAATATATATATTCATGTATTT
66 AAATATATATATTCATGTATTT
46985665 GGATCATGTT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
102 20 0.26
103 55 0.71
104 3 0.04
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (102 bp):
ACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTATATCTAAGATTAATA
AAATATATATATTCATGTATTTATCAATGAATTTATT
Found at i:46985853 original size:14 final size:15
Alignment explanation
Indices: 46985831--46985860 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
46985821 TCATATACAT
46985831 TAAGTTATATTTTTA
1 TAAGTTATATTTTTA
46985846 TAAG-TATATTTTTA
1 TAAGTTATATTTTTA
46985860 T
1 T
46985861 TTTTATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TAAGTTATATTTTTA
Found at i:46987543 original size:27 final size:28
Alignment explanation
Indices: 46987513--46987573 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 28
46987503 AAAGAAATAT
* * *
46987513 ATAAAATACATAAA-TATTTAAAAAA-AA
1 ATAAAATA-AAAAATTATATAAAAATAAA
46987540 ATAAAATAAAAAATTATATAAAAATAAA
1 ATAAAATAAAAAATTATATAAAAATAAA
46987568 A-AAAAT
1 ATAAAAT
46987574 GATTATTGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.14
27 22 0.76
28 3 0.10
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (28 bp):
ATAAAATAAAAAATTATATAAAAATAAA
Found at i:46992079 original size:18 final size:18
Alignment explanation
Indices: 46992037--46992079 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
46992027 ATATAAAAAT
*
46992037 ATTTTTAAAATAAATTTT
1 ATTTTTAAAATAAATTTG
**
46992055 AGATTTAAAATAAATTTG
1 ATTTTTAAAATAAATTTG
46992073 ATTTTTA
1 ATTTTTA
46992080 TTACTTAAGT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTTTTAAAATAAATTTG
Found at i:46992596 original size:51 final size:51
Alignment explanation
Indices: 46992512--46992609 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 51
46992502 AATTATTTTT
46992512 TCAATTTCCTCTCAATTTCCTTCCAAATCTCTCTCAAA-CCCATATTTAATC
1 TCAATTTCCTCTCAATTTCCTTCCAAATCTCTCTCAAATCCC-TATTTAATC
* * * * *
46992563 TCAATTTGCTCTCAGTTTCC-TCTTAAATTTCTCTTAAATCCCTATTT
1 TCAATTTCCTCTCAATTTCCTTC-CAAATCTCTCTCAAATCCCTATTT
46992610 TTAATTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 2 0.05
51 35 0.88
52 3 0.08
ACGTcount: A:0.24, C:0.30, G:0.02, T:0.44
Consensus pattern (51 bp):
TCAATTTCCTCTCAATTTCCTTCCAAATCTCTCTCAAATCCCTATTTAATC
Found at i:46994254 original size:30 final size:30
Alignment explanation
Indices: 46994188--46994255 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
46994178 GAAAACGACG
46994188 CAGGCCCATCAACGAGGCCCAAAAATTCAC
1 CAGGCCCATCAACGAGGCCCAAAAATTCAC
* * * * *
46994218 CCGGCCCATCATC-AGCGCCCATAACTTCAT
1 CAGGCCCATCAACGAG-GCCCAAAAATTCAC
46994248 CAGGCCCA
1 CAGGCCCA
46994256 GCAAATGTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
29 2 0.06
30 29 0.94
ACGTcount: A:0.29, C:0.41, G:0.16, T:0.13
Consensus pattern (30 bp):
CAGGCCCATCAACGAGGCCCAAAAATTCAC
Found at i:46994362 original size:18 final size:18
Alignment explanation
Indices: 46994339--46994381 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
46994329 TGTCAGGTGC
* *
46994339 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
46994357 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
46994375 GTTTCCT
1 GTATCCT
46994382 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:46998142 original size:124 final size:124
Alignment explanation
Indices: 46997922--46998207 Score: 491
Period size: 124 Copynumber: 2.3 Consensus size: 124
46997912 CCCAAACATA
* *
46997922 CTACTGTAGCAAAAGCCCGTCCACGTGGGAGCGATTTAAAAAATTCTTCTGATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTAC
* *
46997987 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAAGAC
66 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTACTTTTTCAAGAC
*
46998046 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTAC
* *
46998111 TTGAAGCTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTACTTTTTCAGGAC
66 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTACTTTTTCAAGAC
* *
46998170 CTACTGTATCAAAAACGCGTCCACGTGGGAGCGATTTC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
46998208 CTTAATAAAT
Statistics
Matches: 153, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
124 153 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTAC
TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTACTTTTTCAAGAC
Found at i:47007161 original size:16 final size:17
Alignment explanation
Indices: 47007137--47007169 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
47007127 GGATTTATAT
*
47007137 AATTTTAAA-ATTTTAA
1 AATTATAAATATTTTAA
47007153 AATTATAAATATTTTAA
1 AATTATAAATATTTTAA
47007170 TTTTAGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTATAAATATTTTAA
Found at i:47011714 original size:57 final size:59
Alignment explanation
Indices: 47011603--47011750 Score: 194
Period size: 57 Copynumber: 2.5 Consensus size: 59
47011593 AATTGACGGT
*
47011603 AAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATATGTGTG
1 AAAAA-GATCTAGCCTGGACGGGTGATCC-AT-CTGATATAGCCCTCCCGAAGAATATGTG-G
47011666 AAAAAGATCTAGCCTGGACGGGTGAT-C-T-TGATATAGCCCTCCCGAAGAATATGTGG
1 AAAAAGATCTAGCCTGGACGGGTGATCCATCTGATATAGCCCTCCCGAAGAATATGTGG
* * *
47011722 AAAATGAATTTAGCCTGGACGGGTAATCC
1 AAAAAG-ATCTAGCCTGGACGGGTGATCC
47011751 GAATTAGGGT
Statistics
Matches: 79, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
56 6 0.08
57 45 0.57
58 1 0.01
59 1 0.01
61 1 0.01
62 20 0.25
63 5 0.06
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (59 bp):
AAAAAGATCTAGCCTGGACGGGTGATCCATCTGATATAGCCCTCCCGAAGAATATGTGG
Found at i:47011978 original size:66 final size:66
Alignment explanation
Indices: 47011872--47012129 Score: 507
Period size: 66 Copynumber: 3.9 Consensus size: 66
47011862 GTTTATATTA
*
47011872 CAGGGGATTTAGCTTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
47011937 G
66 G
47011938 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
47012003 G
66 G
47012004 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
47012069 G
66 G
47012070 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCT
47012130 CTCTGAAATG
Statistics
Matches: 191, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 191 1.00
ACGTcount: A:0.18, C:0.18, G:0.37, T:0.27
Consensus pattern (66 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
G
Found at i:47018122 original size:6 final size:6
Alignment explanation
Indices: 47018108--47018140 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
47018098 AAGACAGTAA
*
47018108 AAGAAG AAGATG AAGATG AAGATG AAGA-G AAGA
1 AAGATG AAGATG AAGATG AAGATG AAGATG AAGA
47018141 GGAGGAGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.58, C:0.00, G:0.33, T:0.09
Consensus pattern (6 bp):
AAGATG
Found at i:47027374 original size:38 final size:38
Alignment explanation
Indices: 47027330--47027406 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
47027320 TTGAACTATC
47027330 TCACTTAGTTCTTTTTGCTCAAAATCTATCTCACTTAG
1 TCACTTAGTTCTTTTTGCTCAAAATCTATCTCACTTAG
47027368 TCACTTAGTTCTTTTTGCTCAAAATCTATCTCACTTAG
1 TCACTTAGTTCTTTTTGCTCAAAATCTATCTCACTTAG
47027406 T
1 T
47027407 TACCCGGCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.45
Consensus pattern (38 bp):
TCACTTAGTTCTTTTTGCTCAAAATCTATCTCACTTAG
Found at i:47028679 original size:31 final size:31
Alignment explanation
Indices: 47028615--47028680 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
47028605 AAAAAATATT
* *
47028615 AATTTAACTCTTTCTAAAACATTAATAGTTA
1 AATTCAACTCTTTCTAAAACATTAATAGCTA
* *
47028646 AATTCAACTCTTTTTAAAATATTGAATA-CTA
1 AATTCAACTCTTTCTAAAACATT-AATAGCTA
47028677 AATT
1 AATT
47028681 TAGCTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 26 0.87
32 4 0.13
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (31 bp):
AATTCAACTCTTTCTAAAACATTAATAGCTA
Found at i:47029008 original size:27 final size:28
Alignment explanation
Indices: 47028978--47029050 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 28
47028968 GACTAGTTGC
47028978 GCCTATCTCGA-AGGCGCCAATGGTGGA
1 GCCTATCTCGACAGGCGCCAATGGTGGA
*
47029005 GCCTAT-TTGACAGGCGCCAATGGTGGA
1 GCCTATCTCGACAGGCGCCAATGGTGGA
*
47029032 GCCTATCT-GACAGGTGCCA
1 GCCTATCTCGACAGGCGCCA
47029051 CTGCTGCTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.32, T:0.21
Consensus pattern (28 bp):
GCCTATCTCGACAGGCGCCAATGGTGGA
Found at i:47029258 original size:12 final size:12
Alignment explanation
Indices: 47029241--47029265 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47029231 GGTGTTCATT
47029241 CGGTTAACCGAC
1 CGGTTAACCGAC
47029253 CGGTTAACCGAC
1 CGGTTAACCGAC
47029265 C
1 C
47029266 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:47030984 original size:3 final size:3
Alignment explanation
Indices: 47030978--47031012 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
47030968 CATTACCTTT
47030978 TTC TTC TTC TTC -TC TTC TTC TTC TTC -TC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
47031013 CCTTTCTCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:47030995 original size:8 final size:8
Alignment explanation
Indices: 47030982--47031013 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
47030972 ACCTTTTTCT
47030982 TCTTCTTC
1 TCTTCTTC
47030990 TCTTC-T-
1 TCTTCTTC
47030996 TCTTCTTC
1 TCTTCTTC
47031004 TCTTCTTC
1 TCTTCTTC
47031012 TC
1 TC
47031014 CTTTCTCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 5 0.23
7 2 0.09
8 15 0.68
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (8 bp):
TCTTCTTC
Found at i:47030995 original size:11 final size:11
Alignment explanation
Indices: 47030979--47031034 Score: 57
Period size: 11 Copynumber: 5.3 Consensus size: 11
47030969 ATTACCTTTT
47030979 TCTTCTTCTTC
1 TCTTCTTCTTC
47030990 TCTTCTTCTTC
1 TCTTCTTCTTC
47031001 T-TCTCTTCTTC
1 TCT-TCTTCTTC
*
47031012 TCCT-TTC-TC
1 TCTTCTTCTTC
47031021 TCTT-TTCTTTC
1 TCTTCTTC-TTC
47031032 TCT
1 TCT
47031035 CTCCCGTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 8 0.21
10 4 0.10
11 27 0.69
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (11 bp):
TCTTCTTCTTC
Found at i:47030997 original size:14 final size:14
Alignment explanation
Indices: 47030978--47031034 Score: 73
Period size: 14 Copynumber: 4.1 Consensus size: 14
47030968 CATTACCTTT
47030978 TTCTTCTTCTTCTC
1 TTCTTCTTCTTCTC
47030992 TTCTTCTTCTTCTC
1 TTCTTCTTCTTCTC
*
47031006 TTCTTCTCCTT-TC
1 TTCTTCTTCTTCTC
47031019 TCTCTT-TTCTTTCTC
1 T-TCTTCTTC-TTCTC
47031034 T
1 T
47031035 CTCCCGTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
13 5 0.13
14 30 0.79
15 3 0.08
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (14 bp):
TTCTTCTTCTTCTC
Found at i:47031000 original size:17 final size:17
Alignment explanation
Indices: 47030978--47031029 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
47030968 CATTACCTTT
47030978 TTCTTCTTCT-TCTCTTC
1 TTCTTCTTCTCT-TCTTC
47030995 TTCTTCTTCTCTTCTTC
1 TTCTTCTTCTCTTCTTC
*
47031012 TCCTT-TCTCTCTT-TTC
1 TTCTTCT-TCTCTTCTTC
47031028 TT
1 TT
47031030 TCTCTCTCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 5 0.16
17 25 0.81
18 1 0.03
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTTCTTCTCTTCTTC
Found at i:47032294 original size:5 final size:5
Alignment explanation
Indices: 47032286--47032310 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
47032276 TTAAAATAAA
47032286 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
47032311 GTGAGTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:47035891 original size:10 final size:10
Alignment explanation
Indices: 47035876--47035900 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47035866 GTCACTAGGC
47035876 TGATTGACTG
1 TGATTGACTG
47035886 TGATTGACTG
1 TGATTGACTG
47035896 TGATT
1 TGATT
47035901 CCTTTGTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.28, T:0.44
Consensus pattern (10 bp):
TGATTGACTG
Found at i:47036172 original size:18 final size:19
Alignment explanation
Indices: 47036149--47036189 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
47036139 TAATGGACTT
47036149 TATAGGATAA-TTTATTGG
1 TATAGGATAATTTTATTGG
47036167 TATAGGATAATTTTTATTGG
1 TATAGGATAA-TTTTATTGG
47036187 TAT
1 TAT
47036190 TTTTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (19 bp):
TATAGGATAATTTTATTGG
Found at i:47040075 original size:91 final size:90
Alignment explanation
Indices: 47039974--47040145 Score: 269
Period size: 91 Copynumber: 1.9 Consensus size: 90
47039964 AAGTAGATTA
47039974 TAAATTATATTTAATAATAATTA-TTTAAATTATATTTTATAGTATTATATATTATGA-TT-TTA
1 TAAATTATATTTAATAATAATTATTTTAAATTATA-TTT-TAGTA-T-TATATTATGATTTATTA
47040036 GTAAATTCATATAAGAATAAGAATTTTAT
62 GTAAATTCATATAAGAATAAGAATTTTAT
*
47040065 TAAATTATATTTAATAATTATTATTTTAAATTATATTTTAGTATTATATTATGATTTTATTAGTA
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATTATGA-TTTATTAGTA
47040130 AATTCATATAAGAATA
65 AATTCATATAAGAATA
47040146 TTTATTAACA
Statistics
Matches: 76, Mismatches: 1, Indels: 8
0.89 0.01 0.09
Matches are distributed among these distances:
88 10 0.13
89 1 0.01
90 7 0.09
91 47 0.62
92 11 0.14
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (90 bp):
TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATTATGATTTATTAGTAA
ATTCATATAAGAATAAGAATTTTAT
Found at i:47040194 original size:15 final size:17
Alignment explanation
Indices: 47040156--47040189 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47040146 TTTATTAACA
47040156 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
47040173 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
47040190 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:47040203 original size:16 final size:15
Alignment explanation
Indices: 47040156--47040203 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
47040146 TTTATTAACA
*
47040156 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
47040173 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
47040188 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
47040204 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:47040389 original size:39 final size:43
Alignment explanation
Indices: 47040346--47040437 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 43
47040336 CTATTATACC
*
47040346 TCTATTC-A-ATTCAACCAAACACAAGAA-TA-CTATTACGCA
1 TCTATTCTACATTCAACCAAACAAAAGAATTACCTATTACGCA
*
47040385 TCTATTCCATTACATTCAACCAAACAAAAGAATTACCTATTACGCC
1 TCTATT-C--TACATTCAACCAAACAAAAGAATTACCTATTACGCA
47040431 TCTATTC
1 TCTATTC
47040438 CATTACGCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
39 6 0.14
40 1 0.02
43 1 0.02
44 18 0.41
45 3 0.07
46 15 0.34
ACGTcount: A:0.39, C:0.27, G:0.04, T:0.29
Consensus pattern (43 bp):
TCTATTCTACATTCAACCAAACAAAAGAATTACCTATTACGCA
Found at i:47040417 original size:44 final size:46
Alignment explanation
Indices: 47040354--47040443 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
47040344 CCTCTATTCA
*
47040354 ATTCAACCAAACACAAGAA-TA-CTATTACGCATCTATTCCATTAC
1 ATTCAACCAAACAAAAGAATTACCTATTACGCATCTATTCCATTAC
*
47040398 ATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTAC
1 ATTCAACCAAACAAAAGAATTACCTATTACGCATCTATTCCATTAC
47040444 GCCTCTATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.43
45 2 0.05
46 22 0.52
ACGTcount: A:0.40, C:0.28, G:0.04, T:0.28
Consensus pattern (46 bp):
ATTCAACCAAACAAAAGAATTACCTATTACGCATCTATTCCATTAC
Found at i:47040444 original size:16 final size:16
Alignment explanation
Indices: 47040423--47040459 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
47040413 AGAATTACCT
47040423 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
47040439 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
47040455 ATTAC
1 ATTAC
47040460 AGCGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.35, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:47042256 original size:21 final size:21
Alignment explanation
Indices: 47042232--47042278 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
47042222 CAGCTTCTTG
*
47042232 GCAGTGATGACAAACTGTTCT
1 GCAGCGATGACAAACTGTTCT
47042253 GCAGCGATGACAAACTGTTCT
1 GCAGCGATGACAAACTGTTCT
47042274 GCAGC
1 GCAGC
47042279 CTTTAAGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (21 bp):
GCAGCGATGACAAACTGTTCT
Found at i:47049400 original size:25 final size:25
Alignment explanation
Indices: 47049321--47049400 Score: 62
Period size: 25 Copynumber: 3.4 Consensus size: 25
47049311 AAGCAATTTT
*
47049321 TCAAAATCTATTCCATGGATCATTC
1 TCAAAATCTACTCCATGGATCATTC
* *** *
47049346 TCAAGA--T-C-CCAAACATC-TTT
1 TCAAAATCTACTCCATGGATCATTC
*
47049366 TCAATATCTACTCCATGGATCATTC
1 TCAAAATCTACTCCATGGATCATTC
47049391 TCAAAATCTA
1 TCAAAATCTA
47049401 TTCCCCTGTA
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
20 7 0.18
21 6 0.16
22 1 0.03
23 2 0.05
24 6 0.16
25 16 0.42
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (25 bp):
TCAAAATCTACTCCATGGATCATTC
Found at i:47053901 original size:24 final size:24
Alignment explanation
Indices: 47053869--47053914 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
47053859 TCATTCAATC
*
47053869 GAAGGGCGA-GAGAGAAGGAGAAAA
1 GAAGAGCGATGAGAG-AGGAGAAAA
*
47053893 GAAGAGCGATGGGAGAGGAGAA
1 GAAGAGCGATGAGAGAGGAGAA
47053915 GCGACACGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.46, C:0.04, G:0.48, T:0.02
Consensus pattern (24 bp):
GAAGAGCGATGAGAGAGGAGAAAA
Found at i:47060898 original size:23 final size:23
Alignment explanation
Indices: 47060872--47060923 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
47060862 TATTGAAATT
47060872 TATTTCAAATATATAATA-TTATA
1 TATTT-AAATATATAATAGTTATA
* *
47060895 TATTTAAATTTGTAATAGTTATA
1 TATTTAAATATATAATAGTTATA
47060918 T-TTTAA
1 TATTTAA
47060924 TGTTTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (23 bp):
TATTTAAATATATAATAGTTATA
Done.