Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 164 of 185
Found at i:49110048 original size:25 final size:24
Alignment explanation
Indices: 49110001--49110048 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
49109991 TATATTTTCA
*
49110001 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
49110025 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
49110049 ATATATATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:49116953 original size:41 final size:40
Alignment explanation
Indices: 49116894--49117006 Score: 124
Period size: 37 Copynumber: 2.9 Consensus size: 40
49116884 TTCAACTACG
*
49116894 AGTCGATGAGACACTGGGTGTCAATCTATTACTTCCGATTA
1 AGTCGATGAGACATTGGGTGTCAA-CTATTACTTCCGATTA
* * * * *
49116935 ATTCGATGAGGCATTGGGTGCCAA-T-TTACTT-CGGTTT
1 AGTCGATGAGACATTGGGTGTCAACTATTACTTCCGATTA
*
49116972 AGCCGATGAGACATTGGGTGTCAACTTATTACTTC
1 AGTCGATGAGACATTGGGTGTCAAC-TATTACTTC
49117007 AAATTATCCG
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
37 24 0.41
38 6 0.10
39 2 0.03
40 6 0.10
41 20 0.34
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (40 bp):
AGTCGATGAGACATTGGGTGTCAACTATTACTTCCGATTA
Found at i:49117239 original size:14 final size:15
Alignment explanation
Indices: 49117220--49117248 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49117210 GAATTGAATA
49117220 TGTTATGAA-TGATT
1 TGTTATGAACTGATT
49117234 TGTTATGAACTGATT
1 TGTTATGAACTGATT
49117249 AATTGAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTTATGAACTGATT
Found at i:49126444 original size:21 final size:21
Alignment explanation
Indices: 49126418--49126458 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49126408 ATCTGCTCAA
* *
49126418 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
49126439 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
49126459 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:49131344 original size:5 final size:5
Alignment explanation
Indices: 49131334--49131359 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
49131324 AATCGATTCT
49131334 CCACC CCACC CCACC CCACC CCACC C
1 CCACC CCACC CCACC CCACC CCACC C
49131360 TCTCCCTCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.81, G:0.00, T:0.00
Consensus pattern (5 bp):
CCACC
Found at i:49133852 original size:18 final size:17
Alignment explanation
Indices: 49133824--49133858 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
49133814 ATTATTAAGA
*
49133824 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
49133841 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
49133859 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:49133900 original size:59 final size:61
Alignment explanation
Indices: 49133817--49133998 Score: 178
Period size: 59 Copynumber: 3.0 Consensus size: 61
49133807 AATATTGATT
*
49133817 ATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAA
1 ATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAA
* * * * ** * * *
49133878 ATT-A-TATTTTA-TAGTATCATATATTATGATTTTAGTAAATTTATATAAGAA-TATTGATT--
1 ATTAAGAATTTTATTA-AATCATATATTTTAATTAAAATATATTTA-ATAATAATTA-TG-TTAA
* *
49133937 ATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATTTTTAATAATAATTATGTTAA
1 ATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAA
49133998 A
1 A
49133999 ATATGATTAA
Statistics
Matches: 90, Mismatches: 21, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
58 2 0.02
59 34 0.38
60 18 0.20
61 34 0.38
62 2 0.02
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.50
Consensus pattern (61 bp):
ATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAA
Found at i:49134232 original size:16 final size:16
Alignment explanation
Indices: 49134211--49134243 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49134201 TTGAATTGCT
49134211 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
49134227 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
49134243 A
1 A
49134244 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:49134557 original size:48 final size:48
Alignment explanation
Indices: 49134494--49134587 Score: 179
Period size: 48 Copynumber: 2.0 Consensus size: 48
49134484 ATATTTCATA
49134494 TATTAAAATATAAATAACAAATTACAATAAATTATTTTTTATGTTTAG
1 TATTAAAATATAAATAACAAATTACAATAAATTATTTTTTATGTTTAG
*
49134542 TATTGAAATATAAATAACAAATTACAATAAATTATTTTTTATGTTT
1 TATTAAAATATAAATAACAAATTACAATAAATTATTTTTTATGTTT
49134588 TTACTAAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (48 bp):
TATTAAAATATAAATAACAAATTACAATAAATTATTTTTTATGTTTAG
Found at i:49150545 original size:6 final size:6
Alignment explanation
Indices: 49150534--49150559 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
49150524 TGCTAGACAG
49150534 GAACAT GAACAT GAACAT GAACAT GA
1 GAACAT GAACAT GAACAT GAACAT GA
49150560 TATCTATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.19, T:0.15
Consensus pattern (6 bp):
GAACAT
Found at i:49153597 original size:157 final size:157
Alignment explanation
Indices: 49153311--49153613 Score: 536
Period size: 157 Copynumber: 1.9 Consensus size: 157
49153301 TTTCGTGATA
*
49153311 CTGATCCCCTGACACCACCTGCGAACATTATCAAACTCAATCAGCAATTTTTTTTCTTTTTAACT
1 CTGATCCCCTGACACCACCTGCGAACATTATCAAACTCAATCAGCAATTTTTTTTCTTTTTAACC
* *
49153376 ATGATATAACATAAGAAATCAAAAGATCAGAGGAAGAAATCCAAACTAACCTGCGCCCAACTGGA
66 AAGATATAACATAAGAAATCAAAAGATCAGAAGAAGAAATCCAAACTAACCTGCGCCCAACTGGA
49153441 TCTGGAGCGTTCATCTCGTTGGTGTTC
131 TCTGGAGCGTTCATCTCGTTGGTGTTC
*
49153468 CTGATCCCCTGACACCGCCTGCGAACATTATCAAACTCAATCAGCAATTTTTTTTCTTTTTTAAC
1 CTGATCCCCTGACACCACCTGCGAACATTATCAAACTCAATCAGCAATTTTTTTTC-TTTTTAAC
* *
49153533 CAAGATATAACATAAG-AATCAAAAGATGAGAAGAAGAAATCCAAACTAACCTGCGCCGAACTGG
65 CAAGATATAACATAAGAAATCAAAAGATCAGAAGAAGAAATCCAAACTAACCTGCGCCCAACTGG
49153597 ATCTGGAGCGTTCATCT
130 ATCTGGAGCGTTCATCT
49153614 TGAGACTCAT
Statistics
Matches: 139, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
157 117 0.84
158 22 0.16
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (157 bp):
CTGATCCCCTGACACCACCTGCGAACATTATCAAACTCAATCAGCAATTTTTTTTCTTTTTAACC
AAGATATAACATAAGAAATCAAAAGATCAGAAGAAGAAATCCAAACTAACCTGCGCCCAACTGGA
TCTGGAGCGTTCATCTCGTTGGTGTTC
Found at i:49157650 original size:46 final size:46
Alignment explanation
Indices: 49157583--49157767 Score: 298
Period size: 46 Copynumber: 4.0 Consensus size: 46
49157573 TGGCAATGTG
49157583 TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
* *
49157629 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
* * * *
49157675 TTAAAAGTAGGTATGGTGTTTTGGTAAAGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
* *
49157721 TGAAAAGTAGGTATGGTATTTCCGTGAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
49157767 T
1 T
49157768 AGCAATGTGA
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (46 bp):
TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
Found at i:49163546 original size:99 final size:97
Alignment explanation
Indices: 49163435--49163637 Score: 273
Period size: 97 Copynumber: 2.1 Consensus size: 97
49163425 TAGTTACAAT
49163435 AAAATATATTTAACATAATAATAAATATAAAATATATAATTTCATTATAGAATGACATATTTATT
1 AAAATATATTTAACATAATAATAAATATAAAATATAT--TTTCATTATAGAATGACATATTTATT
*
49163500 AATTTA-TAAGTATAAATAAATGAGTTATTAATTA
64 AATTTATTAA-TATAAATAAAAGAGTTATTAATTA
* * * * * * * * *
49163534 AAAATATTTTTAACTTAATGATATATATAAAATATATTTTTATTATATAATTACATGTTTATTAT
1 AAAATATATTTAACATAATAATAAATATAAAATATATTTTCATTATAGAATGACATATTTATTAA
*
49163599 TTTATTTATATAAATAAAAGAGTTATTAATTA
66 TTTATTAATATAAATAAAAGAGTTATTAATTA
49163631 AAAATAT
1 AAAATAT
49163638 GAATTAAAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
97 57 0.62
98 2 0.02
99 33 0.36
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (97 bp):
AAAATATATTTAACATAATAATAAATATAAAATATATTTTCATTATAGAATGACATATTTATTAA
TTTATTAATATAAATAAAAGAGTTATTAATTA
Found at i:49168307 original size:11 final size:11
Alignment explanation
Indices: 49168293--49168332 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
49168283 TGTTTTCTCC
*
49168293 CTATTTTGCTA
1 CTATTTTACTA
49168304 CTATTTTACTA
1 CTATTTTACTA
* *
49168315 TTATGTTACTA
1 CTATTTTACTA
49168326 CTATTTT
1 CTATTTT
49168333 GATATTATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:49168404 original size:30 final size:30
Alignment explanation
Indices: 49168370--49168432 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
49168360 ACTAGTTTTA
*
49168370 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAGAGACAT
49168400 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAGAGACAT
49168430 TTG
1 TTG
49168433 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAGACAT
Found at i:49169713 original size:25 final size:25
Alignment explanation
Indices: 49169661--49169712 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
49169651 CTTAATACTA
*
49169661 TTTAATATTTTTTTATTTATGTAAT
1 TTTAATATTTTTTTATTTATATAAT
49169686 TTTAAT-TTATTTTTATTT-TATAAT
1 TTTAATATT-TTTTTATTTATATAAT
49169710 TTT
1 TTT
49169713 TTATAACAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTAATATTTTTTTATTTATATAAT
Found at i:49170455 original size:16 final size:16
Alignment explanation
Indices: 49170434--49170466 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49170424 CTAAAGAACA
49170434 TGTTCTTTAGCGGCGT
1 TGTTCTTTAGCGGCGT
49170450 TGTTCTTTAGCGGCGT
1 TGTTCTTTAGCGGCGT
49170466 T
1 T
49170467 TTTTTCTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.18, G:0.30, T:0.45
Consensus pattern (16 bp):
TGTTCTTTAGCGGCGT
Found at i:49170602 original size:15 final size:15
Alignment explanation
Indices: 49170577--49170615 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
49170567 GCCCTCCTGT
49170577 AGCAA-CAAATCAAA
1 AGCAACCAAATCAAA
*
49170591 AGCAACCAAATCTAA
1 AGCAACCAAATCAAA
*
49170606 ACCAACCAAA
1 AGCAACCAAA
49170616 AGCAATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.59, C:0.28, G:0.05, T:0.08
Consensus pattern (15 bp):
AGCAACCAAATCAAA
Found at i:49170875 original size:21 final size:19
Alignment explanation
Indices: 49170828--49170894 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 19
49170818 TTGCTCTGCT
*
49170828 CTGCTTCTCTCGCTGCAGC
1 CTGCTTCCCTCGCTGCAGC
49170847 CTTCGCTTCCCTCGCTGCAGTC
1 C-T-GCTTCCCTCGCTGCAG-C
* *
49170869 GCTGCTTCCCTCGTTGCCGC
1 -CTGCTTCCCTCGCTGCAGC
49170889 CT-CTTC
1 CTGCTTC
49170895 TTTAAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
18 4 0.10
19 3 0.07
20 2 0.05
21 29 0.71
22 2 0.05
23 1 0.02
ACGTcount: A:0.03, C:0.45, G:0.19, T:0.33
Consensus pattern (19 bp):
CTGCTTCCCTCGCTGCAGC
Found at i:49174304 original size:19 final size:21
Alignment explanation
Indices: 49174282--49174327 Score: 78
Period size: 19 Copynumber: 2.3 Consensus size: 21
49174272 TTATTATTAC
49174282 TTTTATTTTTATAC-TTAT-T
1 TTTTATTTTTATACTTTATGT
49174301 TTTTATTTTTATACTTTATGT
1 TTTTATTTTTATACTTTATGT
49174322 TTTTAT
1 TTTTAT
49174328 ATACATGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 14 0.56
20 4 0.16
21 7 0.28
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTATTTTTATACTTTATGT
Found at i:49178992 original size:38 final size:37
Alignment explanation
Indices: 49178923--49178995 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
49178913 TTTTCATAAT
* *
49178923 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
49178960 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
49178996 TTCTGCACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:49179151 original size:23 final size:23
Alignment explanation
Indices: 49179125--49179177 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
49179115 ATAAGTGCCA
49179125 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
49179148 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
49179171 CACTGAT
1 CACTGAT
49179178 CAATAACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:49179661 original size:30 final size:30
Alignment explanation
Indices: 49179626--49179684 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
49179616 TCCTTAACTC
*
49179626 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
49179656 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTTGCAAAATTACAATTTTGCCCC
49179685 AAAGCTTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:49181121 original size:95 final size:93
Alignment explanation
Indices: 49180937--49181133 Score: 315
Period size: 95 Copynumber: 2.1 Consensus size: 93
49180927 AACATGGATT
*
49180937 TTTTTAATATATTTGTACAAACTGTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTTA
1 TTTTTAATATACTTGTACAAACTGTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTTA
*
49181002 ATATAGTAATAGTAATTTACTTTTTATA
66 ATATAGTAATAGAAATTTACTTTTTATA
*
49181030 TTTTTAATATACTTGTACAAATTGGTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTT
1 TTTTTAATATACTTGTACAAACT-G-TTTTTATATTGTTTCATTTAATAAAATAAAAGTTG-TTT
**
49181095 TTAATATTTTAATAGAAATTTA-TTTTTATA
63 TTAATATAGTAATAGAAATTTACTTTTTATA
49181125 TTTTTAATA
1 TTTTTAATA
49181134 AATTAGAAGT
Statistics
Matches: 96, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
93 21 0.22
94 1 0.01
95 52 0.54
96 22 0.23
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (93 bp):
TTTTTAATATACTTGTACAAACTGTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTTA
ATATAGTAATAGAAATTTACTTTTTATA
Found at i:49182899 original size:13 final size:11
Alignment explanation
Indices: 49182892--49182971 Score: 59
Period size: 10 Copynumber: 7.8 Consensus size: 11
49182882 ATTAAAACAG
49182892 TATTTTAAAAA
1 TATTTTAAAAA
49182903 TATTTT--AAA
1 TATTTTAAAAA
49182912 -A-TTTAAAAA
1 TATTTTAAAAA
*
49182921 -AATTTAAAAA
1 TATTTTAAAAA
49182931 GTATTTTAAAAA
1 -TATTTTAAAAA
*
49182943 -AATTT-AAAA
1 TATTTTAAAAA
*
49182952 -ATTTAAAAAA
1 TATTTTAAAAA
49182962 GTATTTTAAA
1 -TATTTTAAA
49182972 CTAAAAAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 15
0.74 0.07 0.20
Matches are distributed among these distances:
7 3 0.05
8 1 0.02
9 14 0.25
10 16 0.29
11 6 0.11
12 16 0.29
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:49182908 original size:11 final size:10
Alignment explanation
Indices: 49182893--49182961 Score: 58
Period size: 9 Copynumber: 7.1 Consensus size: 10
49182883 TTAAAACAGT
49182893 ATTTTAAAAA
1 ATTTTAAAAA
49182903 TATTTT--AAA
1 -ATTTTAAAAA
49182912 A-TTTAAAAA
1 ATTTTAAAAA
*
49182921 AATTTAAAAA
1 ATTTTAAAAA
49182931 GTATTTTAAAAA
1 --ATTTTAAAAA
*
49182943 AATTT-AAAA
1 ATTTTAAAAA
49182952 A-TTTAAAAA
1 ATTTTAAAAA
49182961 A
1 A
49182962 GTATTTTAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 17 0.34
10 12 0.24
11 5 0.10
12 9 0.18
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (10 bp):
ATTTTAAAAA
Found at i:49182922 original size:10 final size:10
Alignment explanation
Indices: 49182909--49182961 Score: 65
Period size: 10 Copynumber: 5.3 Consensus size: 10
49182899 AAAATATTTT
49182909 AAAATTTAAA
1 AAAATTTAAA
49182919 AAAATTTAAA
1 AAAATTTAAA
*
49182929 AAGTATTTTAAA
1 AA--AATTTAAA
49182941 AAAATTT--A
1 AAAATTTAAA
49182949 AAAATTTAAA
1 AAAATTTAAA
49182959 AAA
1 AAA
49182962 GTATTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 8 0.22
10 20 0.54
12 9 0.24
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:49182934 original size:40 final size:40
Alignment explanation
Indices: 49182878--49182961 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
49182868 AATTTATTTT
* *
49182878 AAAAATTAAAACAGTATTTTAAAAATATTTTAAAATTTAA
1 AAAAATTAAAACAGTATTTTAAAAAAATTTAAAAATTTAA
49182918 AAAAATTTAAAA-AGTATTTTAAAAAAATTTAAAAATTTAA
1 AAAAA-TTAAAACAGTATTTTAAAAAAATTTAAAAATTTAA
49182958 AAAA
1 AAAA
49182962 GTATTTTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 35 0.85
41 6 0.15
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (40 bp):
AAAAATTAAAACAGTATTTTAAAAAAATTTAAAAATTTAA
Found at i:49182961 original size:31 final size:31
Alignment explanation
Indices: 49182895--49182971 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
49182885 AAAACAGTAT
49182895 TTTAAAAA-TATTTT---AAAATTTAAAAAAA
1 TTTAAAAAGTATTTTAAAAAAATTT-AAAAAA
49182923 TTTAAAAAGTATTTTAAAAAAATTT-AAAAA
1 TTTAAAAAGTATTTTAAAAAAATTTAAAAAA
49182953 TTTAAAAAAGTATTTTAAA
1 TTT-AAAAAGTATTTTAAA
49182972 CTAAAAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
28 8 0.18
29 6 0.14
30 8 0.18
31 15 0.34
32 7 0.16
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (31 bp):
TTTAAAAAGTATTTTAAAAAAATTTAAAAAA
Found at i:49184928 original size:126 final size:126
Alignment explanation
Indices: 49184665--49185034 Score: 467
Period size: 126 Copynumber: 2.9 Consensus size: 126
49184655 CAAACAGGAG
* * * * *
49184665 CTACTGTAGAAAAAGAGCGTACACGTGAGAGATTTTTGCAATAATTTTGCTGACAGTGCATCCTG
1 CTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTG
* *
49184730 CTTGAAGC-GTTTTTACACTATTTGTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAGAA
66 CTTGAAGCATTTTTTACACTATTTGTTCAGAACAGTCTTCTTAAAATTATTTTTTCAAGAA
* *
49184790 CTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCATG
1 CTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTG
* * * *
49184855 CTTGAAGCATTTTTTACACTATTTGTTCTGAACATTCTTCTTAAAATTATTTTTTTAGGAA
66 CTTGAAGCATTTTTTACACTATTTGTTCAGAACAGTCTTCTTAAAATTATTTTTTCAAGAA
* * * * *
49184916 -TAACTGTAGAAAAAAAGCATCCACGTGGGAACTTTTTTTTAGTAATTTTGCTGACAGGGCATCC
1 CT-ACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * * * *
49184980 TGCTTGAAACATTTTTTACATTGTCTATTCAGAATC-GCCTTCTCAAAATTATTTT
64 TGCTTGAAGCATTTTTTACACTATTTGTTCAGAA-CAGTCTTCTTAAAATTATTTT
49185035 AAAAAAAGTA
Statistics
Matches: 212, Mismatches: 29, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
125 67 0.32
126 72 0.34
127 72 0.34
128 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (126 bp):
CTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTG
CTTGAAGCATTTTTTACACTATTTGTTCAGAACAGTCTTCTTAAAATTATTTTTTCAAGAA
Found at i:49185022 original size:127 final size:125
Alignment explanation
Indices: 49184665--49185034 Score: 440
Period size: 127 Copynumber: 2.9 Consensus size: 125
49184655 CAAACAGGAG
* * * * * *
49184665 CTACTGTAGAAAAAGAGCGTACACGTGAGAGA-TTTTTGCAATAATTTTGCTGACAGTGCATCCT
1 CTACTGTAGAAAAAAAGCATCCACGTGGGA-ACTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
49184729 GCTTGAAGC-GTTTTTACACTATTTGTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAGAA
65 GCTTGAAGCATTTTTTACACTATTTGTTCAGAA-CGTCTTCTTAAAATTATTTTTTCAAGAA
* * * * *
49184790 CTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCATG
1 CTACTGTAGAAAAAAAGCATCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCCTG
* * * *
49184855 CTTGAAGCATTTTTTACACTATTTGTTCTGAACATTCTTCTTAAAATTATTTTTTTAGGAA
66 CTTGAAGCATTTTTTACACTATTTGTTCAGAAC-GTCTTCTTAAAATTATTTTTTCAAGAA
* *
49184916 -TAACTGTAGAAAAAAAGCATCCACGTGGGAACTTTTTTTTAGTAATTTTGCTGACAGGGCATCC
1 CT-ACTGTAGAAAAAAAGCATCCACGTGGGAAC-TTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * * * *
49184980 TGCTTGAAACATTTTTTACATTGTCTATTCAGAATCGCCTTCTCAAAATTATTTT
64 TGCTTGAAGCATTTTTTACACTATTTGTTCAGAA-CGTCTTCTTAAAATTATTTT
49185035 AAAAAAAGTA
Statistics
Matches: 211, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
125 67 0.32
126 71 0.34
127 72 0.34
128 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (125 bp):
CTACTGTAGAAAAAAAGCATCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCCTG
CTTGAAGCATTTTTTACACTATTTGTTCAGAACGTCTTCTTAAAATTATTTTTTCAAGAA
Found at i:49185082 original size:34 final size:34
Alignment explanation
Indices: 49185044--49185133 Score: 112
Period size: 34 Copynumber: 2.6 Consensus size: 34
49185034 TAAAAAAAGT
*
49185044 AAACCATAATTTAATTAATTTTCTTAAAAACCCAA
1 AAACCATAATTTAGTTAATTTT-TTAAAAACCCAA
* *
49185079 AACCCA-AATTTAGTTAATTTATTTAAAACCCCAA
1 AAACCATAATTTAGTTAATTT-TTTAAAAACCCAA
*
49185113 AAACC-TAATTTAGTTCATTTT
1 AAACCATAATTTAGTTAATTTT
49185134 AAAAAAACTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
33 1 0.02
34 41 0.85
35 6 0.12
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.37
Consensus pattern (34 bp):
AAACCATAATTTAGTTAATTTTTTAAAAACCCAA
Found at i:49189476 original size:37 final size:37
Alignment explanation
Indices: 49189421--49189507 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 37
49189411 GTGACACATG
* * *
49189421 TTTAGCCTAGACTTGTAACTTAATGTCATTTTATAGA
1 TTTAGCCTAGACTGGTAACCTAATGTCATGTTATAGA
* * *
49189458 TTTAGCCTAGACTGGTAACCTGATGTTATGTTATAGG
1 TTTAGCCTAGACTGGTAACCTAATGTCATGTTATAGA
*
49189495 TTTAGCCTGGACT
1 TTTAGCCTAGACT
49189508 AATAACCTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (37 bp):
TTTAGCCTAGACTGGTAACCTAATGTCATGTTATAGA
Found at i:49195672 original size:6 final size:6
Alignment explanation
Indices: 49195663--49195692 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
49195653 TGTTCATAAC
49195663 TTTGGT TTTGGT TTTGGT TTTGGT TTTGGT
1 TTTGGT TTTGGT TTTGGT TTTGGT TTTGGT
49195693 GCAAGTGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (6 bp):
TTTGGT
Found at i:49196276 original size:6 final size:6
Alignment explanation
Indices: 49196265--49196292 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
49196255 CCAACAACAT
49196265 TTTGCC TTTGCC TTTGCC TTTGCC TTTG
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTG
49196293 TTTGATATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.29, G:0.18, T:0.54
Consensus pattern (6 bp):
TTTGCC
Found at i:49202407 original size:22 final size:22
Alignment explanation
Indices: 49202380--49202424 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
49202370 AATTATATTA
49202380 TCAATTTCCTCTCAAATTGCTC
1 TCAATTTCCTCTCAAATTGCTC
* * *
49202402 TCAATTTTCTCTTAAATTTCTC
1 TCAATTTCCTCTCAAATTGCTC
49202424 T
1 T
49202425 TACATCCCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.02, T:0.49
Consensus pattern (22 bp):
TCAATTTCCTCTCAAATTGCTC
Found at i:49202426 original size:11 final size:11
Alignment explanation
Indices: 49202382--49202424 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
49202372 TTATATTATC
49202382 AATTTCCTCTCA
1 AATTT-CTCTCA
*
49202394 AATTGCTCTCA
1 AATTTCTCTCA
* *
49202405 ATTTTCTCTTA
1 AATTTCTCTCA
49202416 AATTTCTCT
1 AATTTCTCT
49202425 TACATCCCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 22 0.85
12 4 0.15
ACGTcount: A:0.23, C:0.26, G:0.02, T:0.49
Consensus pattern (11 bp):
AATTTCTCTCA
Found at i:49204236 original size:18 final size:18
Alignment explanation
Indices: 49204213--49204255 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
49204203 TGCCAGGTGC
* *
49204213 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
49204231 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
49204249 GTTTCCT
1 GTATCCT
49204256 TGTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:49204743 original size:49 final size:49
Alignment explanation
Indices: 49204679--49204787 Score: 191
Period size: 49 Copynumber: 2.2 Consensus size: 49
49204669 TATATTAATG
* *
49204679 TAATAAAATAAAAAATAATTTATTTTGAATATTTTGATGTTATTTCATT
1 TAATAAAATACAAAATAATTTATTTTGAATATTTTGATATTATTTCATT
*
49204728 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
1 TAATAAAATACAAAATAATTTATTTTGAATATTTTGATATTATTTCATT
49204777 TAATAAAATAC
1 TAATAAAATAC
49204788 TGAATATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.47
Consensus pattern (49 bp):
TAATAAAATACAAAATAATTTATTTTGAATATTTTGATATTATTTCATT
Found at i:49208306 original size:125 final size:125
Alignment explanation
Indices: 49207991--49208403 Score: 700
Period size: 125 Copynumber: 3.3 Consensus size: 125
49207981 CCAAATATGA
* *
49207991 TACTGTAGCAAAAACGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
49208056 TGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
66 TGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
*
49208116 TACAGTAGCAAAAGCACGTCCACGGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 TACTGTAGCAAAAGCACGTCCAC-GTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
*
49208181 TTGAAGCATTTTTTATACTATTTGCTCAGAAATGTCAACTCAAAATTATTTTTTCAGGACC
65 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
* * *
49208242 TACTGTAGCAAAAGTATGTCCACATGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
* * *
49208307 TGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCAAAATTATTTTTTCAAGACC
66 TGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
* * *
49208367 TACTGTAGCAAAAGCGCGTCCACGTAGGAGCAATTTC
1 TACTGTAGCAAAAGCACGTCCACGTGGGAGCGATTTC
49208404 CTTAATAAAT
Statistics
Matches: 269, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
125 148 0.55
126 121 0.45
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (125 bp):
TACTGTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
TGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
Found at i:49220238 original size:30 final size:30
Alignment explanation
Indices: 49220204--49220264 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
49220194 CTAATTTCAC
49220204 TATCACCATTATTTTTAACTTCACCAGAGA
1 TATCACCATTATTTTTAACTTCACCAGAGA
*
49220234 TATCACCGTTATTTTTAACTTCACCAGAGA
1 TATCACCATTATTTTTAACTTCACCAGAGA
49220264 T
1 T
49220265 GACCGCCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
TATCACCATTATTTTTAACTTCACCAGAGA
Found at i:49223481 original size:125 final size:125
Alignment explanation
Indices: 49223044--49223483 Score: 594
Period size: 128 Copynumber: 3.5 Consensus size: 125
49223034 GATAAAATCA
* * * *
49223044 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAGTCGCGCCCACGTGTACACGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
49223109 AGGTCCT-GCAAAAATAATTTCGAGTTGAGGTTTTTGAGCAAATAGTATAAAAATGCTTC
66 AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTC
* * * * * * * *
49223168 AGGAAGGATGCTTTATGAGAAAAATTTGTGAAATCGAGCCCTCGTGGATGCGCTTTTGTTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
49223233 AGGTCCTGGAAGAAATAATTTCGACTTAACGTTTCTGAGCATATAGTTAAAAAAAAACGCTTC
66 AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAG-T--ATAAAAACGCTTC
* * * * *
49223296 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACTCTCGTGAACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
*
49223361 AAGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTC
66 AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTC
*
49223421 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCACACGTGGACGCGCTTTTGCTACA
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACA
49223484 ATATCATGTT
Statistics
Matches: 272, Mismatches: 40, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
124 60 0.22
125 101 0.37
126 1 0.00
127 1 0.00
128 109 0.40
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTC
Found at i:49226588 original size:23 final size:22
Alignment explanation
Indices: 49226552--49226619 Score: 91
Period size: 22 Copynumber: 3.0 Consensus size: 22
49226542 TAGTCAAGGA
49226552 TTAGGGTTTTTAAGTTAACGGT
1 TTAGGGTTTTTAAGTTAACGGT
* **
49226574 TTAGGATTTTTTAAGTTAATTGT
1 TTAGG-GTTTTTAAGTTAACGGT
*
49226597 TTAGGGTTTTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAACGGT
49226619 T
1 T
49226620 ATATGTTTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 20 0.51
23 19 0.49
ACGTcount: A:0.24, C:0.01, G:0.25, T:0.50
Consensus pattern (22 bp):
TTAGGGTTTTTAAGTTAACGGT
Found at i:49226627 original size:22 final size:21
Alignment explanation
Indices: 49226556--49226619 Score: 74
Period size: 23 Copynumber: 2.9 Consensus size: 21
49226546 CAAGGATTAG
49226556 GGTTTTTAAGTTAACGGTTTA
1 GGTTTTTAAGTTAACGGTTTA
**
49226577 GGATTTTTTAAGTTAATTGTTTA
1 GG--TTTTTAAGTTAACGGTTTA
*
49226600 GGGTTTTTAAGTTAAGGGTT
1 -GGTTTTTAAGTTAACGGTT
49226620 ATATGTTTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 2 0.06
22 15 0.42
23 17 0.47
24 2 0.06
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.50
Consensus pattern (21 bp):
GGTTTTTAAGTTAACGGTTTA
Found at i:49226633 original size:14 final size:14
Alignment explanation
Indices: 49226595--49226648 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
49226585 TAAGTTAATT
*
49226595 GTTTAGGGTTTTTAA
1 GTTTAGGG-TTATAA
* *
49226610 GTTAAGGGTTATAT
1 GTTTAGGGTTATAA
*
49226624 GTTTAGGGTTAAAA
1 GTTTAGGGTTATAA
*
49226638 GTTTAAGGTTA
1 GTTTAGGGTTA
49226649 GGTGGTTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 25 0.78
15 7 0.22
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (14 bp):
GTTTAGGGTTATAA
Found at i:49226667 original size:28 final size:26
Alignment explanation
Indices: 49226652--49226818 Score: 135
Period size: 28 Copynumber: 6.2 Consensus size: 26
49226642 AAGGTTAGGT
49226652 GGTTTTTAAGTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGTTAA-GGTTTAG
*
49226679 GGTTTTTAAGTTAAGGGTTAGGGTTTAG
1 GGTTTTTAAGTTAA--GTTAAGGTTTAG
49226707 GGTTTTTAAGTTAAG----GGTTTAG
1 GGTTTTTAAGTTAAGTTAAGGTTTAG
* *
49226729 TGTTTTTAAGTTAATGGTTATGGTTTAG
1 GGTTTTTAAGTTAA--GTTAAGGTTTAG
* **
49226757 GGTTTATGGGTTTTAAGTTAAGAGTTTAG
1 GGTTTTTAAG--TTAAGTTAAG-GTTTAG
* * *
49226786 GATTTTTAAGTTAAGAATTAGGGTTTAA
1 GGTTTTTAAGTTAAG--TTAAGGTTTAG
49226814 GGTTT
1 GGTTT
49226819 AGGGTTTGTC
Statistics
Matches: 113, Mismatches: 14, Indels: 25
0.74 0.09 0.16
Matches are distributed among these distances:
22 20 0.18
24 1 0.01
26 1 0.01
27 19 0.17
28 48 0.42
29 20 0.18
30 4 0.04
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (26 bp):
GGTTTTTAAGTTAAGTTAAGGTTTAG
Found at i:49226680 original size:78 final size:77
Alignment explanation
Indices: 49226547--49226761 Score: 221
Period size: 78 Copynumber: 2.8 Consensus size: 77
49226537 AGTACTAGTC
* ** * * *
49226547 AAGGATTAGGGTTTTTAAGTTAACGGTTTAG-GATTTT---TTAAGTTAATTGTTTAGGGTTTTT
1 AAGGTTTAGGGTTTAAAAGTTAAGGGTTTAGTGTTTTTAAGTTAAGTTAATGGTTTAGGGTTTTT
49226608 AAGTTAAGGGTT
66 AAGTTAAGGGTT
* *
49226620 ATATGTTTAGGG-TTAAAAGTTTAA-GG-TTAGGTGGTTTTTAAGTTAAGTTAAGGGTTTAGGGT
1 A-AGGTTTAGGGTTTAAAAG-TTAAGGGTTTA-GT-GTTTTTAAGTTAAGTTAATGGTTTAGGGT
49226682 TTTTAAGTTAAGGGTT
62 TTTTAAGTTAAGGGTT
* **
49226698 AGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGTGTTTTTAAGTTAATGGTT-ATGGTTTAGGGTTT
1 AAGGTTTAGGGTTTAAAAGTTAAGGGTTTAGTGTTTTTAAGTTAA--GTTAATGGTTTAGGGTTT
49226762 ATGGGTTTTA
Statistics
Matches: 117, Mismatches: 12, Indels: 21
0.78 0.08 0.14
Matches are distributed among these distances:
72 3 0.03
73 9 0.08
74 12 0.10
75 5 0.04
77 25 0.21
78 57 0.49
79 6 0.05
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (77 bp):
AAGGTTTAGGGTTTAAAAGTTAAGGGTTTAGTGTTTTTAAGTTAAGTTAATGGTTTAGGGTTTTT
AAGTTAAGGGTT
Found at i:49226697 original size:15 final size:15
Alignment explanation
Indices: 49226677--49226726 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
49226667 TTAAGGGTTT
49226677 AGGGTTTTTAAGTTA
1 AGGGTTTTTAAGTTA
* *
49226692 AGGG---TTAGGGTTT
1 AGGGTTTTTA-AGTTA
49226705 AGGGTTTTTAAGTTA
1 AGGGTTTTTAAGTTA
49226720 AGGGTTT
1 AGGGTTT
49226727 AGTGTTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
12 3 0.11
13 7 0.26
15 14 0.52
16 3 0.11
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (15 bp):
AGGGTTTTTAAGTTA
Found at i:49226716 original size:50 final size:50
Alignment explanation
Indices: 49226662--49226818 Score: 181
Period size: 50 Copynumber: 3.0 Consensus size: 50
49226652 GGTTTTTAAG
49226662 TTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTAGGGTTT
*
49226712 TTAAGTTAAGGGTTTAGTGTTTTTAAGTTAATGGTTATGGTTTAGGGTTTATGGG-TT
1 TTAAGTTAAGGGTTTAGGGTTTTTAAGTTAA--G----GG-TTAGGGTTTA-GGGTTT
* * ** *
49226769 TTAAGTTAAGAGTTTAGGATTTTTAAGTTAAGAATTAGGGTTTAAGGTTT
1 TTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTAGGGTTT
49226819 AGGGTTTGTC
Statistics
Matches: 91, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
49 2 0.02
50 42 0.46
52 1 0.01
55 1 0.01
56 2 0.02
57 40 0.44
58 3 0.03
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (50 bp):
TTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTAGGGTTT
Found at i:49226726 original size:22 final size:22
Alignment explanation
Indices: 49226662--49226747 Score: 100
Period size: 22 Copynumber: 3.6 Consensus size: 22
49226652 GGTTTTTAAG
49226662 TTAAGTTAAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
49226684 TTAAGTTAAGGGTTAGGGTTTAGGGTTT
1 TTAAGTT-A-----AGGGTTTAGGGTTT
*
49226712 TTAAGTTAAGGGTTTAGTGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
*
49226734 TTAAGTTAATGGTT
1 TTAAGTTAAGGGTT
49226748 ATGGTTTAGG
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
22 33 0.59
23 1 0.02
27 1 0.02
28 21 0.38
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTAAGTTAAGGGTTTAGGGTTT
Found at i:49226762 original size:57 final size:57
Alignment explanation
Indices: 49226662--49226825 Score: 177
Period size: 57 Copynumber: 3.0 Consensus size: 57
49226652 GGTTTTTAAG
* *
49226662 TTAAGTTAAGGGTTTAGGGTTTTTAAGTT----A--AGGG-TTAGGGTTTAGGGTTT
1 TTAAGTTAAGAGTTTAGGATTTTTAAGTTAAGAATTAGGGTTTAGGGTTTAGGGTTT
* * *
49226712 TTAAGTTAAGGGTTTAGTG-TTTTTAAGTTAATG-GTTATGGTTTAGGGTTTATGGG-TT
1 TTAAGTTAAGAGTTTAG-GATTTTTAAGTTAA-GAATTAGGGTTTAGGGTTTA-GGGTTT
*
49226769 TTAAGTTAAGAGTTTAGGATTTTTAAGTTAAGAATTAGGGTTTAAGGTTTAGGGTTT
1 TTAAGTTAAGAGTTTAGGATTTTTAAGTTAAGAATTAGGGTTTAGGGTTTAGGGTTT
49226826 GTCAATTAAA
Statistics
Matches: 96, Mismatches: 6, Indels: 17
0.81 0.05 0.14
Matches are distributed among these distances:
50 27 0.28
51 1 0.01
56 8 0.08
57 57 0.59
58 3 0.03
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (57 bp):
TTAAGTTAAGAGTTTAGGATTTTTAAGTTAAGAATTAGGGTTTAGGGTTTAGGGTTT
Found at i:49226783 original size:22 final size:22
Alignment explanation
Indices: 49226758--49226801 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
49226748 ATGGTTTAGG
49226758 GTTTATGG-GTTTTAAGTTAAGA
1 GTTTA-GGAGTTTTAAGTTAAGA
*
49226780 GTTTAGGATTTTTAAGTTAAGA
1 GTTTAGGAGTTTTAAGTTAAGA
49226802 ATTAGGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (22 bp):
GTTTAGGAGTTTTAAGTTAAGA
Found at i:49227082 original size:21 final size:21
Alignment explanation
Indices: 49227058--49227100 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
49227048 TCCAGCTTCT
*
49227058 GGCGGCGATTGTGGTTCCTCC
1 GGCGGCGATTCTGGTTCCTCC
*
49227079 GGCGGGGATTCTGGTTCCTCC
1 GGCGGCGATTCTGGTTCCTCC
49227100 G
1 G
49227101 ATAGGGCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.05, C:0.28, G:0.40, T:0.28
Consensus pattern (21 bp):
GGCGGCGATTCTGGTTCCTCC
Found at i:49228775 original size:50 final size:51
Alignment explanation
Indices: 49228716--49228813 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
49228706 ATTATTTAAA
* *
49228716 AATAGGGATTTAAGAGAAA-TT-GAGAGGAAATTGGGAGCCAATTGAGATTT
1 AATAGGGATTTAAGAGAAATTTGGA-AGGAAATTGAGAGCAAATTGAGATTT
* * *
49228766 AATATGGATTTCAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AATAGGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGA
49228814 GCAAATTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
50 17 0.41
51 22 0.54
52 2 0.05
ACGTcount: A:0.41, C:0.04, G:0.29, T:0.27
Consensus pattern (51 bp):
AATAGGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGATTT
Found at i:49228823 original size:12 final size:12
Alignment explanation
Indices: 49228794--49228826 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
49228784 ATTTGGAAGG
49228794 AATTTGAGAGCA
1 AATTTGAGAGCA
49228806 AA-TTGAGAGCA
1 AATTTGAGAGCA
49228817 AATTTGAGAG
1 AATTTGAGAG
49228827 AGGATTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (12 bp):
AATTTGAGAGCA
Found at i:49232317 original size:6 final size:6
Alignment explanation
Indices: 49232306--49232361 Score: 112
Period size: 6 Copynumber: 9.3 Consensus size: 6
49232296 AGAGTCCTTC
49232306 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
49232354 AAATAT AA
1 AAATAT AA
49232362 GCCAAGGAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:49244214 original size:834 final size:833
Alignment explanation
Indices: 49242606--49244272 Score: 3325
Period size: 834 Copynumber: 2.0 Consensus size: 833
49242596 AAACAATCGA
49242606 ACTAAAACTATATAAAAACAGGTCACACATACACACTACAGACTTGAATTCCGAATTCCGAATTC
1 ACTAAAACTATATAAAAACAGGTCACACATACACACTACAGACTTGAATTCCGAATTCCGAATTC
49242671 TCTTAAAACAAGAAGAGGAACAGAGAGTGGAGCAGAAAGAGTACTGTTTGGCAATGGAGAAAGTG
66 TCTTAAAACAAGAAGAGGAACAGAGAGTGGAGCAGAAAGAGTACTGTTTGGCAATGGAGAAAGTG
49242736 AGAAGAAATACAGTGGAGAGATTTCTCAGTCAAAACCTGAGAGAAAGCTTCGATGTTAGTCGCAA
131 AGAAGAAATACAGTGGAGAGATTTCTCAGTCAAAACCTGAGAGAAAGCTTCGATGTTAGTCGCAA
49242801 TTTCTCTCTCCTTCTCTAACGAAACTTTTTTTTAGGTCAGAAATGATCTCTGTTTCCTTTTTTGT
196 TTTCTCTCTCCTTCTCTAACGAAACTTTTTTTTAGGTCAGAAATGATCTCTGTTTCCTTTTTTGT
49242866 TTTGTTTCAAAGGTTCAAAATTAAATTACGTAAATAAATTTGGAAATGAAGAAAAGAGTGAAGTA
261 TTTGTTTCAAAGGTTCAAAATTAAATTACGTAAATAAATTTGGAAATGAAGAAAAGAGTGAAGTA
49242931 GATGGAAAAAGGAAGACGAAACTCTGATATGATTTCAAGCTACGTTTCAAGCTTAGCTGGACTCC
326 GATGGAAAAAGGAAGACGAAACTCTGATATGATTTCAAGCTACGTTTCAAGCTTAGCTGGACTCC
49242996 TCCATACCGATGGAAATGTACGCGTGTGCCTTTCGTATTATGACTGTATCAGACTTTCTTCCCAT
391 TCCATACCGATGGAAATGTACGCGTGTGCCTTTCGTATTATGACTGTATCAGACTTTCTTCCCAT
49243061 TTTGCCCTCACTTTTTCTCTTTTAATTCGGTATTACCAGTTTTATAACGAAAAATTCTATTATTT
456 TTTGCCCTCACTTTTTCTCTTTTAATTCGGTATTACCAGTTTTATAACGAAAAATTCTATTATTT
49243126 TTAAAAGAAAATCGTAACTGAAAGCCTGATTTTGTGAATTTGAATCCAACTGATGTAAAATATTA
521 TTAAAAGAAAATCGTAACTGAAAGCCTGATTTTGTGAATTTGAATCCAACTGATGTAAAATATTA
49243191 TGGAGTAGCATTTCTCTCTTTTTCTTTTTGGATTTTTTAAAGGACGCTGTGTTTTTTTTATTTAT
586 TGGAGTAGCATTTCTCTCTTTTTCTTTTTGGATTTTTTAAAGGACGCTGTGTTTTTTTTATTTAT
49243256 TTAAATATGAAAATCAATTAAAATATGAGTTTTTTAAATTATTTGGGGAGTTGAAATTTTTTAAT
651 TTAAATATGAAAATCAATTAAAATATGAGTTTTTTAAATTATTTGGGGAGTTGAAATTTTTTAAT
49243321 TTAAGGATTACAACTCGTGATGTGGGGTCAGGCTTCTAAAATTTTATATTTATATTTATAAATAT
716 TTAAGGATTACAACTCGTGATGTGGGGTCAGGCTTCTAAAATTTTATATTTATATTTATAAATAT
49243386 TATATATTTTTCAATAAAATGTAATTTTAATAAAATTAGTAGGAAAAAATATT
781 TATATATTTTTCAATAAAATGTAATTTTAATAAAATTAGTAGGAAAAAATATT
49243439 NACTAAAACTATATAAAAACAGGTCACACATACACACTACAGACTTGAATTCCGAATTCCGAATT
1 -ACTAAAACTATATAAAAACAGGTCACACATACACACTACAGACTTGAATTCCGAATTCCGAATT
49243504 CTCTTAAAACAAGAAGAGGAACAGAGAGTGGAGCAGAAAGAGTACTGTTTGGCAATGGAGAAAGT
65 CTCTTAAAACAAGAAGAGGAACAGAGAGTGGAGCAGAAAGAGTACTGTTTGGCAATGGAGAAAGT
49243569 GAGAAGAAATACAGTGGAGAGATTTCTCAGTCAAAACCTGAGAGAAAGCTTCGATGTTAGTCGCA
130 GAGAAGAAATACAGTGGAGAGATTTCTCAGTCAAAACCTGAGAGAAAGCTTCGATGTTAGTCGCA
49243634 ATTTCTCTCTCCTTCTCTAACGAAACTTTTTTTTAGGTCAGAAATGATCTCTGTTTCCTTTTTTG
195 ATTTCTCTCTCCTTCTCTAACGAAACTTTTTTTTAGGTCAGAAATGATCTCTGTTTCCTTTTTTG
49243699 TTTTGTTTCAAAGGTTCAAAATTAAATTACGTAAATAAATTTGGAAATGAAGAAAAGAGTGAAGT
260 TTTTGTTTCAAAGGTTCAAAATTAAATTACGTAAATAAATTTGGAAATGAAGAAAAGAGTGAAGT
49243764 AGATGGAAAAAGGAAGACGAAACTCTGATATGATTTCAAGCTACGTTTCAAGCTTAGCTGGACTC
325 AGATGGAAAAAGGAAGACGAAACTCTGATATGATTTCAAGCTACGTTTCAAGCTTAGCTGGACTC
49243829 CTCCATACCGATGGAAATGTACGCGTGTGCCTTTCGTATTATGACTGTATCAGACTTTCTTCCCA
390 CTCCATACCGATGGAAATGTACGCGTGTGCCTTTCGTATTATGACTGTATCAGACTTTCTTCCCA
49243894 TTTTGCCCTCACTTTTTCTCTTTTAATTCGGTATTACCAGTTTTATAACGAAAAATTCTATTATT
455 TTTTGCCCTCACTTTTTCTCTTTTAATTCGGTATTACCAGTTTTATAACGAAAAATTCTATTATT
49243959 TTTAAAAGAAAATCGTAACTGAAAGCCTGATTTTGTGAATTTGAATCCAACTGATGTAAAATATT
520 TTTAAAAGAAAATCGTAACTGAAAGCCTGATTTTGTGAATTTGAATCCAACTGATGTAAAATATT
49244024 ATGGAGTAGCATTTCTCTCTTTTTCTTTTTGGATTTTTTAAAGGACGCTGTGTTTTTTTTATTTA
585 ATGGAGTAGCATTTCTCTCTTTTTCTTTTTGGATTTTTTAAAGGACGCTGTGTTTTTTTTATTTA
49244089 TTTAAATATGAAAATCAATTAAAATATGAGTTTTTTAAATTATTTGGGGAGTTGAAATTTTTTAA
650 TTTAAATATGAAAATCAATTAAAATATGAGTTTTTTAAATTATTTGGGGAGTTGAAATTTTTTAA
49244154 TTTAAGGATTACAACTCGTGATGTGGGGTCAGGCTTCTAAAATTTTATATTTATATTTATAAATA
715 TTTAAGGATTACAACTCGTGATGTGGGGTCAGGCTTCTAAAATTTTATATTTATATTTATAAATA
49244219 TTATATATTTTTCAATAAAATGTAATTTTAATAAAATTAGTAGGAAAAAATATT
780 TTATATATTTTTCAATAAAATGTAATTTTAATAAAATTAGTAGGAAAAAATATT
49244273 TTCTAATTAT
Statistics
Matches: 833, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
834 833 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (833 bp):
ACTAAAACTATATAAAAACAGGTCACACATACACACTACAGACTTGAATTCCGAATTCCGAATTC
TCTTAAAACAAGAAGAGGAACAGAGAGTGGAGCAGAAAGAGTACTGTTTGGCAATGGAGAAAGTG
AGAAGAAATACAGTGGAGAGATTTCTCAGTCAAAACCTGAGAGAAAGCTTCGATGTTAGTCGCAA
TTTCTCTCTCCTTCTCTAACGAAACTTTTTTTTAGGTCAGAAATGATCTCTGTTTCCTTTTTTGT
TTTGTTTCAAAGGTTCAAAATTAAATTACGTAAATAAATTTGGAAATGAAGAAAAGAGTGAAGTA
GATGGAAAAAGGAAGACGAAACTCTGATATGATTTCAAGCTACGTTTCAAGCTTAGCTGGACTCC
TCCATACCGATGGAAATGTACGCGTGTGCCTTTCGTATTATGACTGTATCAGACTTTCTTCCCAT
TTTGCCCTCACTTTTTCTCTTTTAATTCGGTATTACCAGTTTTATAACGAAAAATTCTATTATTT
TTAAAAGAAAATCGTAACTGAAAGCCTGATTTTGTGAATTTGAATCCAACTGATGTAAAATATTA
TGGAGTAGCATTTCTCTCTTTTTCTTTTTGGATTTTTTAAAGGACGCTGTGTTTTTTTTATTTAT
TTAAATATGAAAATCAATTAAAATATGAGTTTTTTAAATTATTTGGGGAGTTGAAATTTTTTAAT
TTAAGGATTACAACTCGTGATGTGGGGTCAGGCTTCTAAAATTTTATATTTATATTTATAAATAT
TATATATTTTTCAATAAAATGTAATTTTAATAAAATTAGTAGGAAAAAATATT
Found at i:49245837 original size:21 final size:21
Alignment explanation
Indices: 49245795--49245839 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
49245785 CCATTTGATA
49245795 ATTTTTTTTATACTTTATTATT
1 ATTTTTTTTATAC-TTATTATT
49245817 ATTTTTTTTATA-TTATGTATT
1 ATTTTTTTTATACTTAT-TATT
49245838 AT
1 AT
49245840 CCTTTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.18
21 6 0.27
22 12 0.55
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (21 bp):
ATTTTTTTTATACTTATTATT
Found at i:49248960 original size:50 final size:50
Alignment explanation
Indices: 49248845--49248993 Score: 183
Period size: 50 Copynumber: 3.0 Consensus size: 50
49248835 GATAATAACA
** ** * *
49248845 TGCCAAAGCCATGT-CTCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAAAGCCATGTCCT-AGACATGGTCTTACGGGGGA-CCTCTCATCTCAG
* *
49248896 TGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAAAGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCAG
* *
49248946 TGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTC
1 TGCCAAAGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTC
49248994 GATGGCATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
50 54 0.63
51 30 0.35
52 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAAAGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCAG
Found at i:49249043 original size:67 final size:67
Alignment explanation
Indices: 49248935--49249061 Score: 218
Period size: 67 Copynumber: 1.9 Consensus size: 67
49248925 ACGGGGGACC
*
49248935 TCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249000 AT
66 AT
* * *
49249002 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49249062 GTGCCAACGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 56 1.00
ACGTcount: A:0.19, C:0.33, G:0.21, T:0.27
Consensus pattern (67 bp):
TCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49249077 original size:50 final size:50
Alignment explanation
Indices: 49249002--49249270 Score: 351
Period size: 50 Copynumber: 5.2 Consensus size: 50
49248992 TCGATGGCAT
*
49249002 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
49249052 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACAT-G--------GTCTTACATGGGACC
* * * *
49249111 TCTCATCTCGGTGTCAACGCCATGTCTCAAACATGGTCTTATATGAGG-CC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATG-GGACC
* * *
49249161 TCTCAACTTGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
**
49249211 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
49249261 TCTCATCTCG
1 TCTCATCTCG
49249271 ATGGCATTCT
Statistics
Matches: 191, Mismatches: 17, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
49 2 0.01
50 139 0.73
51 3 0.02
58 1 0.01
59 46 0.24
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.27
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
Found at i:49249090 original size:117 final size:117
Alignment explanation
Indices: 49248884--49251085 Score: 3680
Period size: 117 Copynumber: 18.5 Consensus size: 117
49248874 ACATGGGATG
* * * ** *
49248884 TTCTCATATCGGTGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCAGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49248949 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49249001 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
* *
49249066 CAACGCCATGTCCCAGACATGGTCTTACATGTCTTACATGGGACCTCTCATCTCGGTGTCAACGC
66 CAACGCCATGTCCCAGACATGGTCTTAC--G-------GGGGACCTCTCATCTCGATG-----G-
49249131 CA
116 CA
* * * * * ** *
49249133 TGTCTCAAACAT-GGT-CTTATATG--AGGCCTCTCA-ACTTGGTGCCAATGCCATGTCCCAGAC
1 T-TCTC-ATC-TCGGTGC-CA-ATGCCATG--TCCCAGACATGGT--C--TTACATG----GGAC
* * * * * * ** * *
49249193 ATGGTCTTACATGGGACCT-CTCATCTCGGTG-CCAACGCCATGTCCCAGACATGGTCTTACGGG
51 CT-CTCAT-C-TCGG---TGC-CAACGCCATGTCCCA-GACATG----------G-TCTTACGGG
49249256 GGACCTCTCATCTCGATGGCA
97 GGACCTCTCATCTCGATGGCA
49249277 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49249342 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49249394 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49249459 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49249511 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49249576 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49249628 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49249693 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49249745 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49249810 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49249862 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49249927 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49249979 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250044 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250096 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250161 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250213 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250278 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250330 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250395 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250447 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250512 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250564 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250629 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250681 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250746 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250798 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250863 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49250915 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
49250980 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
66 CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
49251032 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
49251086 TTACCCAAAT
Statistics
Matches: 1983, Mismatches: 46, Indels: 112
0.93 0.02 0.05
Matches are distributed among these distances:
117 1809 0.91
118 1 0.00
119 1 0.00
126 18 0.01
128 12 0.01
129 4 0.00
131 4 0.00
132 4 0.00
133 10 0.01
134 16 0.01
135 8 0.00
136 1 0.00
138 10 0.01
140 1 0.00
141 8 0.00
142 16 0.01
143 10 0.01
144 4 0.00
145 4 0.00
147 4 0.00
148 12 0.01
150 18 0.01
157 1 0.00
158 1 0.00
159 6 0.00
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.26
Consensus pattern (117 bp):
TTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
CAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGCA
Found at i:49249319 original size:67 final size:67
Alignment explanation
Indices: 49249211--49249337 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49249201 ACATGGGACC
*
49249211 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249276 AT
66 AT
* *
49249278 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49249338 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49249353 original size:50 final size:50
Alignment explanation
Indices: 49249278--49249387 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49249268 TCGATGGCAT
* *
49249278 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49249328 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49249378 TCTCATCTCG
1 TCTCATCTCG
49249388 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49249401 original size:67 final size:67
Alignment explanation
Indices: 49249328--49249454 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49249318 ACATGGGACC
*
49249328 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249393 AT
66 AT
* *
49249395 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49249455 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49249470 original size:50 final size:50
Alignment explanation
Indices: 49249395--49249504 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49249385 TCGATGGCAT
* *
49249395 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49249445 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49249495 TCTCATCTCG
1 TCTCATCTCG
49249505 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49249518 original size:67 final size:67
Alignment explanation
Indices: 49249445--49249571 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49249435 ACATGGGACC
*
49249445 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249510 AT
66 AT
* *
49249512 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49249572 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49249587 original size:50 final size:50
Alignment explanation
Indices: 49249512--49249621 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49249502 TCGATGGCAT
* *
49249512 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49249562 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49249612 TCTCATCTCG
1 TCTCATCTCG
49249622 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49249635 original size:67 final size:67
Alignment explanation
Indices: 49249562--49249688 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49249552 ACATGGGACC
*
49249562 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249627 AT
66 AT
* *
49249629 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49249689 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49249704 original size:50 final size:50
Alignment explanation
Indices: 49249629--49249738 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49249619 TCGATGGCAT
* *
49249629 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49249679 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49249729 TCTCATCTCG
1 TCTCATCTCG
49249739 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49249752 original size:67 final size:67
Alignment explanation
Indices: 49249679--49249805 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49249669 ACATGGGACC
*
49249679 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249744 AT
66 AT
* *
49249746 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49249806 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49249821 original size:50 final size:50
Alignment explanation
Indices: 49249746--49249855 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49249736 TCGATGGCAT
* *
49249746 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49249796 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49249846 TCTCATCTCG
1 TCTCATCTCG
49249856 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49249869 original size:67 final size:67
Alignment explanation
Indices: 49249796--49249922 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49249786 ACATGGGACC
*
49249796 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249861 AT
66 AT
* *
49249863 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49249923 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49249938 original size:50 final size:50
Alignment explanation
Indices: 49249863--49249972 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49249853 TCGATGGCAT
* *
49249863 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49249913 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49249963 TCTCATCTCG
1 TCTCATCTCG
49249973 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49249986 original size:67 final size:67
Alignment explanation
Indices: 49249913--49250039 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49249903 ACATGGGACC
*
49249913 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49249978 AT
66 AT
* *
49249980 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250040 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250055 original size:50 final size:50
Alignment explanation
Indices: 49249980--49250089 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49249970 TCGATGGCAT
* *
49249980 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250030 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250080 TCTCATCTCG
1 TCTCATCTCG
49250090 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250103 original size:67 final size:67
Alignment explanation
Indices: 49250030--49250156 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250020 ACATGGGACC
*
49250030 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250095 AT
66 AT
* *
49250097 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250157 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250172 original size:50 final size:50
Alignment explanation
Indices: 49250097--49250206 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250087 TCGATGGCAT
* *
49250097 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250147 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250197 TCTCATCTCG
1 TCTCATCTCG
49250207 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250220 original size:67 final size:67
Alignment explanation
Indices: 49250147--49250273 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250137 ACATGGGACC
*
49250147 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250212 AT
66 AT
* *
49250214 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250274 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250289 original size:50 final size:50
Alignment explanation
Indices: 49250214--49250323 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250204 TCGATGGCAT
* *
49250214 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250264 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250314 TCTCATCTCG
1 TCTCATCTCG
49250324 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250337 original size:67 final size:67
Alignment explanation
Indices: 49250264--49250390 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250254 ACATGGGACC
*
49250264 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250329 AT
66 AT
* *
49250331 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250391 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250406 original size:50 final size:50
Alignment explanation
Indices: 49250331--49250440 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250321 TCGATGGCAT
* *
49250331 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250381 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250431 TCTCATCTCG
1 TCTCATCTCG
49250441 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250454 original size:67 final size:67
Alignment explanation
Indices: 49250381--49250507 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250371 ACATGGGACC
*
49250381 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250446 AT
66 AT
* *
49250448 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250508 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250523 original size:50 final size:50
Alignment explanation
Indices: 49250448--49250557 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250438 TCGATGGCAT
* *
49250448 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250498 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250548 TCTCATCTCG
1 TCTCATCTCG
49250558 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250571 original size:67 final size:67
Alignment explanation
Indices: 49250498--49250624 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250488 ACATGGGACC
*
49250498 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250563 AT
66 AT
* *
49250565 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250625 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250640 original size:50 final size:50
Alignment explanation
Indices: 49250565--49250674 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250555 TCGATGGCAT
* *
49250565 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250615 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250665 TCTCATCTCG
1 TCTCATCTCG
49250675 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250688 original size:67 final size:67
Alignment explanation
Indices: 49250615--49250741 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250605 ACATGGGACC
*
49250615 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250680 AT
66 AT
* *
49250682 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250742 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250757 original size:50 final size:50
Alignment explanation
Indices: 49250682--49250791 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250672 TCGATGGCAT
* *
49250682 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250732 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250782 TCTCATCTCG
1 TCTCATCTCG
49250792 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250805 original size:67 final size:67
Alignment explanation
Indices: 49250732--49250858 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250722 ACATGGGACC
*
49250732 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250797 AT
66 AT
* *
49250799 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250859 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250874 original size:50 final size:50
Alignment explanation
Indices: 49250799--49250908 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250789 TCGATGGCAT
* *
49250799 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250849 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49250899 TCTCATCTCG
1 TCTCATCTCG
49250909 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49250922 original size:67 final size:67
Alignment explanation
Indices: 49250849--49250975 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
49250839 ACATGGGACC
*
49250849 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGGC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
49250914 AT
66 AT
* *
49250916 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
49250976 GTGCCAACGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGATGGC
AT
Found at i:49250991 original size:50 final size:50
Alignment explanation
Indices: 49250916--49251025 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
49250906 TCGATGGCAT
* *
49250916 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
49250966 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
49251016 TCTCATCTCG
1 TCTCATCTCG
49251026 ATGGCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:49251456 original size:30 final size:30
Alignment explanation
Indices: 49251422--49251479 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
49251412 CCTCGACTCT
49251422 AACTTTGGA-AAAATTACGATTTTGCCCCTA
1 AACTTT-GACAAAATTACGATTTTGCCCCTA
* * *
49251452 AACTTTTACATAATTACGCTTTTGCCCC
1 AACTTTGACAAAATTACGATTTTGCCCC
49251480 AAAGTTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (30 bp):
AACTTTGACAAAATTACGATTTTGCCCCTA
Found at i:49251915 original size:18 final size:18
Alignment explanation
Indices: 49251892--49251929 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
49251882 AATTCGGCCT
49251892 AATGAAGAAGATGATAAA
1 AATGAAGAAGATGATAAA
49251910 AATGAAGAAGATGATAAA
1 AATGAAGAAGATGATAAA
49251928 AA
1 AA
49251930 ATTGGCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (18 bp):
AATGAAGAAGATGATAAA
Found at i:49252522 original size:21 final size:21
Alignment explanation
Indices: 49252498--49252587 Score: 110
Period size: 21 Copynumber: 4.3 Consensus size: 21
49252488 TCTTAAGGGT
*
49252498 TGAATAGAAGCTCGTAAA-AGC
1 TGAACAGAAGCTCG-AAAGAGC
* *** *
49252519 TGAACAGAAACTTTTAAGAGT
1 TGAACAGAAGCTCGAAAGAGC
49252540 TGAACAGAAGCTCGAAAGAGC
1 TGAACAGAAGCTCGAAAGAGC
49252561 TGAACAGAAGCTCGAAAGAGC
1 TGAACAGAAGCTCGAAAGAGC
49252582 TGAACA
1 TGAACA
49252588 AAAAGTAAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
20 2 0.04
21 55 0.96
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (21 bp):
TGAACAGAAGCTCGAAAGAGC
Found at i:49252525 original size:42 final size:42
Alignment explanation
Indices: 49252460--49252569 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
49252450 CATCGTTTTG
* * * * *
49252460 TAGAAGCTCATGAGAGCTAAACAGAAACTCTTAAGGGTTGAA
1 TAGAAGCTCGTAAAAGCTGAACAGAAACTCTTAAGAGTTGAA
*
49252502 TAGAAGCTCGTAAAAGCTGAACAGAAACTTTTAAGAGTTGAA
1 TAGAAGCTCGTAAAAGCTGAACAGAAACTCTTAAGAGTTGAA
*
49252544 CAGAAGCTCG-AAAGAGCTGAACAGAA
1 TAGAAGCTCGTAAA-AGCTGAACAGAA
49252570 GCTCGAAAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 3 0.05
42 57 0.95
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.19
Consensus pattern (42 bp):
TAGAAGCTCGTAAAAGCTGAACAGAAACTCTTAAGAGTTGAA
Found at i:49252580 original size:42 final size:43
Alignment explanation
Indices: 49252472--49252587 Score: 146
Period size: 42 Copynumber: 2.7 Consensus size: 43
49252462 GAAGCTCATG
* * *
49252472 AGAGCTAAACAGAAACTCTTAAGGGTTGAATAGAAGCTCGTAA
1 AGAGCTGAACAGAAACTCTTAAGAGTTGAACAGAAGCTCGTAA
*
49252515 A-AGCTGAACAGAAACTTTTAAGAGTTGAACAGAAGCTCG-AA
1 AGAGCTGAACAGAAACTCTTAAGAGTTGAACAGAAGCTCGTAA
* ** *
49252556 AGAGCTGAACAGAAGCTCGAAAGAGCTGAACA
1 AGAGCTGAACAGAAACTCTTAAGAGTTGAACA
49252588 AAAAGTAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 3 0.05
42 59 0.94
43 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (43 bp):
AGAGCTGAACAGAAACTCTTAAGAGTTGAACAGAAGCTCGTAA
Found at i:49253724 original size:34 final size:36
Alignment explanation
Indices: 49253661--49253738 Score: 133
Period size: 34 Copynumber: 2.2 Consensus size: 36
49253651 CACGTTTTGC
49253661 ACCTTAATAAATTTACTTACACGAAACTTTAATACT
1 ACCTTAATAAATTTACTTACACGAAACTTTAATACT
*
49253697 ACCTTAATAAATTT-TTTA-ACGAAACTTTAATACT
1 ACCTTAATAAATTTACTTACACGAAACTTTAATACT
49253731 ACCTTAAT
1 ACCTTAAT
49253739 GACATTCCGT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 24 0.59
35 3 0.07
36 14 0.34
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (36 bp):
ACCTTAATAAATTTACTTACACGAAACTTTAATACT
Found at i:49255339 original size:20 final size:21
Alignment explanation
Indices: 49255323--49255362 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
49255313 ACCAAAAATT
49255323 TATTTTAAAAATAAAAAAAAG
1 TATTTTAAAAATAAAAAAAAG
*
49255344 TATTTTAAAATTAAAAAAA
1 TATTTTAAAAATAAAAAAA
49255363 TAAAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
TATTTTAAAAATAAAAAAAAG
Found at i:49255340 original size:21 final size:21
Alignment explanation
Indices: 49255316--49255363 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
49255306 AATAAACACC
*
49255316 AAAAATTTATTTTAAAAATAA
1 AAAAATGTATTTTAAAAATAA
* *
49255337 AAAAAAGTATTTTAAAATTAA
1 AAAAATGTATTTTAAAAATAA
49255358 AAAAAT
1 AAAAAT
49255364 AAAAATATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAAATGTATTTTAAAAATAA
Found at i:49282216 original size:12 final size:12
Alignment explanation
Indices: 49282199--49282235 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
49282189 GAAAGAGCAC
*
49282199 CAGGTTCAGGTT
1 CAGGTTCGGGTT
49282211 CAGGTTCGGGTT
1 CAGGTTCGGGTT
*
49282223 CGGGTTCGGGTT
1 CAGGTTCGGGTT
49282235 C
1 C
49282236 TTCACTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.19, G:0.41, T:0.32
Consensus pattern (12 bp):
CAGGTTCGGGTT
Found at i:49282228 original size:18 final size:18
Alignment explanation
Indices: 49282201--49282235 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49282191 AAGAGCACCA
49282201 GGTTCAGGTTCAGGTTCG
1 GGTTCAGGTTCAGGTTCG
* *
49282219 GGTTCGGGTTCGGGTTC
1 GGTTCAGGTTCAGGTTC
49282236 TTCACTTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.17, G:0.43, T:0.34
Consensus pattern (18 bp):
GGTTCAGGTTCAGGTTCG
Found at i:49292766 original size:31 final size:31
Alignment explanation
Indices: 49292728--49292806 Score: 158
Period size: 31 Copynumber: 2.5 Consensus size: 31
49292718 AGTAAATAAT
49292728 GAATATAGTAACATTTACGTACCAAAAAGAA
1 GAATATAGTAACATTTACGTACCAAAAAGAA
49292759 GAATATAGTAACATTTACGTACCAAAAAGAA
1 GAATATAGTAACATTTACGTACCAAAAAGAA
49292790 GAATATAGTAACATTTA
1 GAATATAGTAACATTTA
49292807 ATAATGAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.25
Consensus pattern (31 bp):
GAATATAGTAACATTTACGTACCAAAAAGAA
Found at i:49303080 original size:30 final size:30
Alignment explanation
Indices: 49303041--49303104 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
49303031 CAATATTCTG
*
49303041 TATTTAAAGTTATAATTTGA-TCACTAAAT
1 TATTTAAAGTTATAATTTAAGTCACTAAAT
* * *
49303070 TATTTGAAAGTTTTTATTTAAGTCACTGAAT
1 TATTT-AAAGTTATAATTTAAGTCACTAAAT
49303101 TATT
1 TATT
49303105 AAAATCGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 5 0.17
30 12 0.41
31 12 0.41
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48
Consensus pattern (30 bp):
TATTTAAAGTTATAATTTAAGTCACTAAAT
Found at i:49304541 original size:19 final size:20
Alignment explanation
Indices: 49304511--49304581 Score: 71
Period size: 19 Copynumber: 3.6 Consensus size: 20
49304501 AAAAATATAA
49304511 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
49304531 ATTTTGAA-TTTTA-AAATTT
1 ATTTTGAATTTTTATAAA-TT
*
49304550 ACTTTGAATTTTT-TAAAATT
1 ATTTTGAATTTTTAT-AAATT
49304570 ATTTTG-ATTTTT
1 ATTTTGAATTTTT
49304582 TTTGTAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
17 3 0.07
18 5 0.11
19 17 0.39
20 16 0.36
21 3 0.07
ACGTcount: A:0.32, C:0.01, G:0.07, T:0.59
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:49304565 original size:21 final size:20
Alignment explanation
Indices: 49304539--49304582 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
49304529 ATATTTTGAA
49304539 TTTTAAAATTTACTTTGAATT
1 TTTTAAAA-TTACTTTGAATT
*
49304560 TTTTAAAATTATTTTG-ATT
1 TTTTAAAATTACTTTGAATT
49304579 TTTT
1 TTTT
49304583 TTGTAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.32
20 7 0.32
21 8 0.36
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTAAAATTACTTTGAATT
Found at i:49304582 original size:19 final size:19
Alignment explanation
Indices: 49304479--49304582 Score: 70
Period size: 19 Copynumber: 5.2 Consensus size: 19
49304469 TTTTAGAAAA
*
49304479 TTTTAAAATT-TTTATAATT
1 TTTTAAAATTATTT-TGATT
* *
49304498 TTTAAAAATATAAATTTTGGAAT
1 TTTTAAAAT-T--ATTTT-GATT
*
49304521 TTTTATAAA-TATTTTGA-A
1 TTTTA-AAATTATTTTGATT
*
49304539 TTTTAAAATTTACTTTGAATT
1 TTTTAAAA-TTATTTTG-ATT
49304560 TTTTAAAATTATTTTGATT
1 TTTTAAAATTATTTTGATT
49304579 TTTT
1 TTTT
49304583 TTGTAATTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
17 3 0.04
18 5 0.07
19 23 0.34
20 14 0.21
21 8 0.12
22 2 0.03
23 9 0.13
24 3 0.04
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTTAAAATTATTTTGATT
Found at i:49304584 original size:21 final size:21
Alignment explanation
Indices: 49304539--49304583 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
49304529 ATATTTTGAA
49304539 TTTTAAAATTTACTTTGAATT
1 TTTTAAAATTTACTTTGAATT
* *
49304560 TTTTAAAA-TTATTTTGATTT
1 TTTTAAAATTTACTTTGAATT
49304580 TTTT
1 TTTT
49304584 TGTAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTAAAATTTACTTTGAATT
Found at i:49309146 original size:17 final size:17
Alignment explanation
Indices: 49309124--49309157 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49309114 ACTTTCTTGT
49309124 AAACAAGGAAAAAGTTG
1 AAACAAGGAAAAAGTTG
*
49309141 AAACAAGGAAAAGGTTG
1 AAACAAGGAAAAAGTTG
49309158 GATGGGTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.26, T:0.12
Consensus pattern (17 bp):
AAACAAGGAAAAAGTTG
Found at i:49311086 original size:27 final size:27
Alignment explanation
Indices: 49311048--49311102 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
49311038 ATGAGGCTCA
49311048 TTTAGAAGCAAATGATCTCTAGGAAGT
1 TTTAGAAGCAAATGATCTCTAGGAAGT
49311075 TTTAGAAGCAAATGATCTCTAGGAAGT
1 TTTAGAAGCAAATGATCTCTAGGAAGT
49311102 T
1 T
49311103 GTGGAGGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (27 bp):
TTTAGAAGCAAATGATCTCTAGGAAGT
Found at i:49311189 original size:22 final size:22
Alignment explanation
Indices: 49311163--49311211 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
49311153 GCAGATCAAG
49311163 AATTACGAGAAGAAATAAAGAA
1 AATTACGAGAAGAAATAAAGAA
*
49311185 AATTAGGAGAAGAAATAAAGAA
1 AATTACGAGAAGAAATAAAGAA
49311207 AATTA
1 AATTA
49311212 AAGGCAAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.63, C:0.02, G:0.18, T:0.16
Consensus pattern (22 bp):
AATTACGAGAAGAAATAAAGAA
Found at i:49311439 original size:51 final size:51
Alignment explanation
Indices: 49311361--49311463 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
49311351 AGATGGTGAA
* *
49311361 GGAGTACTTTGACAAATTGTTTGGAATCGCAAACAAAGATTATTTTGATTT
1 GGAGTACTTTGAAAAATTGTTTAGAATCGCAAACAAAGATTATTTTGATTT
*
49311412 GGAGTACTTTGAAAAATTGTTTAGAATCGCAAACAAATATTATTTTGATTT
1 GGAGTACTTTGAAAAATTGTTTAGAATCGCAAACAAAGATTATTTTGATTT
49311463 G
1 G
49311464 AATTTCCTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (51 bp):
GGAGTACTTTGAAAAATTGTTTAGAATCGCAAACAAAGATTATTTTGATTT
Found at i:49312008 original size:21 final size:21
Alignment explanation
Indices: 49311974--49312013 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
49311964 GGAGTGTCAT
*
49311974 TAAGATAATATTAAAGTTTCG
1 TAAGAAAATATTAAAGTTTCG
* *
49311995 TAAGAAAATTTTAATGTTT
1 TAAGAAAATATTAAAGTTT
49312014 TGATAGTTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (21 bp):
TAAGAAAATATTAAAGTTTCG
Found at i:49313272 original size:42 final size:42
Alignment explanation
Indices: 49313195--49313330 Score: 146
Period size: 42 Copynumber: 3.2 Consensus size: 42
49313185 TATTAACTCA
* * * *
49313195 TATGAGTTTCTGTTCAACCCTAATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAGTTCAACCCTTATAGGTTTCCGTTCAGCTCT
* * *
49313237 TTTGAGCTTCAGTTTAACCCTTATAGGTTTTCGTTCAGCTCT
1 TATGAGCTTCAGTTCAACCCTTATAGGTTTCCGTTCAGCTCT
* ** * * *
49313279 TATGAGCTTCCGTTCAACCCTTACGGGTTTCTGTTTAGCACT
1 TATGAGCTTCAGTTCAACCCTTATAGGTTTCCGTTCAGCTCT
*
49313321 TATGTGCTTC
1 TATGAGCTTC
49313331 TGTGCAGCCT
Statistics
Matches: 77, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 77 1.00
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (42 bp):
TATGAGCTTCAGTTCAACCCTTATAGGTTTCCGTTCAGCTCT
Found at i:49313301 original size:21 final size:21
Alignment explanation
Indices: 49313195--49313301 Score: 81
Period size: 21 Copynumber: 5.1 Consensus size: 21
49313185 TATTAACTCA
*
49313195 TATGAGTTTCTGTTCAACCCT
1 TATGAGTTTCCGTTCAACCCT
* * * *
49313216 AATGGGTTTCCGTTCAGCTCT
1 TATGAGTTTCCGTTCAACCCT
* * * *
49313237 TTTGAGCTTCAGTTTAACCCT
1 TATGAGTTTCCGTTCAACCCT
* * *
49313258 TAT-AGGTTTTCGTTCAGCTCT
1 TATGA-GTTTCCGTTCAACCCT
*
49313279 TATGAGCTTCCGTTCAACCCT
1 TATGAGTTTCCGTTCAACCCT
49313300 TA
1 TA
49313302 CGGGTTTCTG
Statistics
Matches: 60, Mismatches: 24, Indels: 4
0.68 0.27 0.05
Matches are distributed among these distances:
20 1 0.02
21 58 0.97
22 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (21 bp):
TATGAGTTTCCGTTCAACCCT
Found at i:49326110 original size:19 final size:19
Alignment explanation
Indices: 49326079--49326127 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
49326069 AAAAATATAA
*
49326079 ATTTTGAAATTTTTATAAA-T
1 ATTTTG-AATTTTGA-AAATT
49326099 ATTTTGAATTTTGAAAATT
1 ATTTTGAATTTTGAAAATT
49326118 ATTTTGAATT
1 ATTTTGAATT
49326128 ATTTTGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 3 0.11
19 18 0.67
20 6 0.22
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (19 bp):
ATTTTGAATTTTGAAAATT
Found at i:49329125 original size:18 final size:17
Alignment explanation
Indices: 49329098--49329157 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 17
49329088 AAAAATTATA
*
49329098 AAAAATTATATGAAGAAT
1 AAAAA-TATATGAAAAAT
**
49329116 AAAAACTATAAAATAAAAT
1 AAAAA-TATATGA-AAAAT
49329135 AAAAATATATGAAAAAT
1 AAAAATATATGAAAAAT
49329152 ATAAAA
1 A-AAAA
49329158 AAAACTAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 6 0.18
18 19 0.56
19 9 0.26
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAAATATATGAAAAAT
Found at i:49329155 original size:19 final size:19
Alignment explanation
Indices: 49329088--49329158 Score: 58
Period size: 19 Copynumber: 3.7 Consensus size: 19
49329078 TTTAAACATT
49329088 AAAAATTATAAAAAATTATATG
1 AAAAA-TAT-AAAAA-TATATG
* *
49329110 AAGAATA-AAAACTATA--
1 AAAAATATAAAAATATATG
*
49329126 AAATAAAATAAAAATATATG
1 AAA-AATATAAAAATATATG
49329146 AAAAATATAAAAA
1 AAAAATATAAAAA
49329159 AAACTAATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 11
0.70 0.11 0.20
Matches are distributed among these distances:
16 2 0.05
17 3 0.08
18 12 0.31
19 13 0.33
20 3 0.08
21 2 0.05
22 4 0.10
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (19 bp):
AAAAATATAAAAATATATG
Found at i:49329456 original size:27 final size:28
Alignment explanation
Indices: 49329397--49329467 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 28
49329387 TAAAACTGTA
*
49329397 AATATTTT-TA-TATTTTTATGTTTTTG
1 AATATTTTATATTATTTTTATGTTTTTC
* *
49329423 GA-GTTTTATATTATTTTTAT-TTTTTC
1 AATATTTTATATTATTTTTATGTTTTTC
*
49329449 AATATTTTATATTCTTTTT
1 AATATTTTATATTATTTTT
49329468 TGAATAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
25 4 0.11
26 9 0.25
27 23 0.64
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (28 bp):
AATATTTTATATTATTTTTATGTTTTTC
Found at i:49329526 original size:28 final size:28
Alignment explanation
Indices: 49329474--49329527 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
49329464 TTTTTGAATA
*
49329474 ATTTTTAATAATACATTTTTTATTTTGT
1 ATTTTTAATAATACATTTTTAATTTTGT
49329502 ATTTTT-ATAATAC-TTTAATTAATTTT
1 ATTTTTAATAATACATTT--TTAATTTT
49329528 CTATATCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 3 0.13
27 7 0.30
28 13 0.57
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (28 bp):
ATTTTTAATAATACATTTTTAATTTTGT
Done.