Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 167 of 185
Found at i:50077342 original size:209 final size:209
Alignment explanation
Indices: 50076982--50077395 Score: 774
Period size: 209 Copynumber: 2.0 Consensus size: 209
50076972 TTAACCATAC
*
50076982 AAACTTACCTGAATTGAGTTGTAATAATTGCAGTAGTTCAGTGACTATTCTGCAATTTTTCCTTT
1 AAACTTACCTGAATTGAGTTGTAATAATTGCAGTAGTTCAGGGACTATTCTGCAATTTTTCCTTT
* * *
50077047 TTCACGAGTATCTACGAAATCTTGATCTTGTCCTATAGATTTCAATCGTTAACTTGATTTTCTCT
66 TTCACGAGTATCTACGAAATCTTGATCTTGTCCGATAGATGTCAATCGTGAACTTGATTTTCTCT
50077112 CTCCTTCAACTTCTATTTCTTGAATCTAACTTGATATTCGAGCTCACCATTGTCTCATTATTATT
131 CTCCTTCAACTTCTATTTCTTGAATCTAACTTGATATTCGAGCTCACCATTGTCTCATTATTATT
50077177 TTTCTCTCTTAGTT
196 TTTCTCTCTTAGTT
50077191 AAACTTACCTGAATTGAGTTGTAATAATTGCAGTAGTTCAGGGACTATTCTGCAATTTTTCCTTT
1 AAACTTACCTGAATTGAGTTGTAATAATTGCAGTAGTTCAGGGACTATTCTGCAATTTTTCCTTT
*
50077256 TTCACGAGTATCTACGAAATCTTGATCTTGTCCGATTGATGTCAATCGTGAACTTGATTTTCTCT
66 TTCACGAGTATCTACGAAATCTTGATCTTGTCCGATAGATGTCAATCGTGAACTTGATTTTCTCT
*
50077321 CTCCTTCAACTTCTATTTCTTGAATCTAACTTGATATTCTAGCTCACCATTGTCTCATTATTATT
131 CTCCTTCAACTTCTATTTCTTGAATCTAACTTGATATTCGAGCTCACCATTGTCTCATTATTATT
50077386 TTTCTCTCTT
196 TTTCTCTCTT
50077396 GGTAGTTATG
Statistics
Matches: 199, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
209 199 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (209 bp):
AAACTTACCTGAATTGAGTTGTAATAATTGCAGTAGTTCAGGGACTATTCTGCAATTTTTCCTTT
TTCACGAGTATCTACGAAATCTTGATCTTGTCCGATAGATGTCAATCGTGAACTTGATTTTCTCT
CTCCTTCAACTTCTATTTCTTGAATCTAACTTGATATTCGAGCTCACCATTGTCTCATTATTATT
TTTCTCTCTTAGTT
Found at i:50088468 original size:108 final size:108
Alignment explanation
Indices: 50088274--50088490 Score: 416
Period size: 108 Copynumber: 2.0 Consensus size: 108
50088264 CTGCTTGCTA
50088274 AAGGCGACTTCAAATGCACTTAACTTCTACTCTTCTCTCTGTAGGAACTCTTCAAAGTGACTTCA
1 AAGGCGACTTCAAATGCACTTAACTTCTACTCTTCTCTCTGTAGGAACTCTTCAAAGTGACTTCA
50088339 GGACACAGCTTGTTTGCTATTGTCAATGGAAGGTGTGTGGAGG
66 GGACACAGCTTGTTTGCTATTGTCAATGGAAGGTGTGTGGAGG
* *
50088382 AAGGTGACTTCAAATGTACTTAACTTCTACTCTTCTCTCTGTAGGAACTCTTCAAAGTGACTTCA
1 AAGGCGACTTCAAATGCACTTAACTTCTACTCTTCTCTCTGTAGGAACTCTTCAAAGTGACTTCA
50088447 GGACACAGCTTGTTTGCTATTGTCAATGGAAGGTGTGTGGAGG
66 GGACACAGCTTGTTTGCTATTGTCAATGGAAGGTGTGTGGAGG
50088490 A
1 A
50088491 CCCTAGATCA
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.32
Consensus pattern (108 bp):
AAGGCGACTTCAAATGCACTTAACTTCTACTCTTCTCTCTGTAGGAACTCTTCAAAGTGACTTCA
GGACACAGCTTGTTTGCTATTGTCAATGGAAGGTGTGTGGAGG
Found at i:50101567 original size:52 final size:53
Alignment explanation
Indices: 50101476--50101580 Score: 149
Period size: 53 Copynumber: 2.0 Consensus size: 53
50101466 TAAGATTTTG
* *
50101476 AATTATCCACTAGTTTTAAAATTAGTCAAACATAATATTAAATTAGATTACAT
1 AATTATCCAATAGTTTTAAAATTAGTCAAACATAATATTAAAGTAGATTACAT
* * * *
50101529 AATTATCCAATAGTTTTAAAATTCGT-TAACATATTATTAGAGTAGATTACAT
1 AATTATCCAATAGTTTTAAAATTAGTCAAACATAATATTAAAGTAGATTACAT
50101581 GTCTATGATC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
52 22 0.48
53 24 0.52
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (53 bp):
AATTATCCAATAGTTTTAAAATTAGTCAAACATAATATTAAAGTAGATTACAT
Found at i:50107690 original size:47 final size:47
Alignment explanation
Indices: 50107557--50107763 Score: 184
Period size: 47 Copynumber: 4.3 Consensus size: 47
50107547 ATAGTAAAAT
** * *
50107557 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTATACAGTAG-CACATATCAC--ACCGATGCCATAGCCCAGA
* * * * *
50107606 CATGGTCTTATAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATAGCCCAGA
* *
50107652 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATAGCCCAGA
* * * * *
50107699 TATGGTCTTATACGGAAGCACAAATCACATTTCTCCGAAGCCATAGCCCAGC
1 TATGGTCTTATACAGTAGCACATATCACA-----CCGATGCCATAGCCCAGA
50107751 TATGGTCTTATAC
1 TATGGTCTTATAC
50107764 GGAAATCACA
Statistics
Matches: 130, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
46 27 0.21
47 55 0.42
48 10 0.08
49 11 0.08
52 27 0.21
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (47 bp):
TATGGTCTTATACAGTAGCACATATCACACCGATGCCATAGCCCAGA
Found at i:50121353 original size:2 final size:2
Alignment explanation
Indices: 50121346--50121376 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
50121336 TTGAATGCAG
50121346 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
50121377 GCCACGCAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:50122615 original size:11 final size:11
Alignment explanation
Indices: 50122599--50122623 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50122589 AAGTTGGCAC
50122599 ATAACTCTAGT
1 ATAACTCTAGT
50122610 ATAACTCTAGT
1 ATAACTCTAGT
50122621 ATA
1 ATA
50122624 GCTGATCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (11 bp):
ATAACTCTAGT
Found at i:50136705 original size:14 final size:14
Alignment explanation
Indices: 50136686--50136714 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50136676 TTTAGACTAT
50136686 ATTAAAAAATTAAA
1 ATTAAAAAATTAAA
50136700 ATTAAAAAATTAAA
1 ATTAAAAAATTAAA
50136714 A
1 A
50136715 AAAACAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
ATTAAAAAATTAAA
Found at i:50137863 original size:15 final size:15
Alignment explanation
Indices: 50137840--50137869 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50137830 AAATTATATT
50137840 TATTAAAAATAATTA
1 TATTAAAAATAATTA
*
50137855 TATTTAAAATAATTA
1 TATTAAAAATAATTA
50137870 ATTGAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TATTAAAAATAATTA
Found at i:50137871 original size:19 final size:18
Alignment explanation
Indices: 50137831--50137882 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
50137821 CACATATAGA
50137831 AATTATATTTATTAAAAAT
1 AATTATATTTA-TAAAAAT
50137850 AATTATATTTA-AAATAATT
1 AATTATATTTATAAA-AA-T
50137869 AATTGA-ATTTATAA
1 AATT-ATATTTATAA
50137883 TATTAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.10
18 2 0.07
19 21 0.72
20 3 0.10
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
AATTATATTTATAAAAAT
Found at i:50144668 original size:15 final size:15
Alignment explanation
Indices: 50144650--50144683 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
50144640 ATACATATTC
50144650 TAAAAATATTAATTT
1 TAAAAATATTAATTT
50144665 TAAAAATATTAATTT
1 TAAAAATATTAATTT
50144680 TAAA
1 TAAA
50144684 TTTTTTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAAAATATTAATTT
Found at i:50146631 original size:17 final size:18
Alignment explanation
Indices: 50146594--50146632 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
50146584 TTAAATTGAA
* *
50146594 TGAAAATGTATTGAGTTG
1 TGAAAATGTAGTGAATTG
50146612 TGAAAATGT-GTGAATTG
1 TGAAAATGTAGTGAATTG
50146629 TGAA
1 TGAA
50146633 TTGAATATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (18 bp):
TGAAAATGTAGTGAATTG
Found at i:50148520 original size:31 final size:31
Alignment explanation
Indices: 50148430--50148526 Score: 106
Period size: 32 Copynumber: 3.1 Consensus size: 31
50148420 TAGTAGCTAA
* *
50148430 CATGTGGATACTTTTCACTATTAAGCATAAAT
1 CATGTGGATACTTTTCA-TGTTAAGCATAATT
* *
50148462 CACGTGAATACTTTTCATGGTTAAGCATAATT
1 CATGTGGATACTTTTCAT-GTTAAGCATAATT
* *
50148494 CTTGTGGATACTTATTCAT-TTAAGCATTATT
1 CATGTGGATACTT-TTCATGTTAAGCATAATT
50148525 CA
1 CA
50148527 CGTGCATTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
31 13 0.24
32 36 0.67
33 5 0.09
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (31 bp):
CATGTGGATACTTTTCATGTTAAGCATAATT
Found at i:50150003 original size:167 final size:167
Alignment explanation
Indices: 50149722--50150054 Score: 639
Period size: 167 Copynumber: 2.0 Consensus size: 167
50149712 CTGAGTTCTC
50149722 ATAAATACACACATATAACTTAGCATTTATCATCAACATCATATCATCACAATTACATAATTCAC
1 ATAAATACACACATATAACTTAGCATTTATCATCAACATCATATCATCACAATTACATAATTCAC
*
50149787 TTCAAACAAATTAACATACATGATTATGTTACACGAACTTTTCAATTATCCATTTCAAACTAGTG
66 TTCAAACAAATTAACATACATGATTATGTTACACAAACTTTTCAATTATCCATTTCAAACTAGTG
50149852 TACTTAAACATACATTCCATGAATTTTGAGTAAATTA
131 TACTTAAACATACATTCCATGAATTTTGAGTAAATTA
*
50149889 ATAAATACACACATATAACTTAGCGTTTATCATCAACATCATATCATCACAATTACATAATTCAC
1 ATAAATACACACATATAACTTAGCATTTATCATCAACATCATATCATCACAATTACATAATTCAC
*
50149954 TTCAAACAAATTAACATACATGATTATGTTACACAAACTTTTTAATTATCCATTTCAAACTAGTG
66 TTCAAACAAATTAACATACATGATTATGTTACACAAACTTTTCAATTATCCATTTCAAACTAGTG
50150019 TACTTAAACATACATTCCATGAATTTTGAGTAAATT
131 TACTTAAACATACATTCCATGAATTTTGAGTAAATT
50150055 TACTCATAGC
Statistics
Matches: 163, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
167 163 1.00
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.35
Consensus pattern (167 bp):
ATAAATACACACATATAACTTAGCATTTATCATCAACATCATATCATCACAATTACATAATTCAC
TTCAAACAAATTAACATACATGATTATGTTACACAAACTTTTCAATTATCCATTTCAAACTAGTG
TACTTAAACATACATTCCATGAATTTTGAGTAAATTA
Found at i:50150817 original size:22 final size:23
Alignment explanation
Indices: 50150791--50150835 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
50150781 ACCTGATCAG
50150791 AATACGACACAT-AAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
50150813 AATACGACACATAAAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
50150836 TCAGTAAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (23 bp):
AATACGACACATAAAGTGCCTGA
Found at i:50152247 original size:16 final size:16
Alignment explanation
Indices: 50152226--50152256 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
50152216 AAAGGATAAC
50152226 ATATACATATATATGT
1 ATATACATATATATGT
50152242 ATATACATATATATG
1 ATATACATATATATG
50152257 GACAACTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (16 bp):
ATATACATATATATGT
Found at i:50160622 original size:3 final size:3
Alignment explanation
Indices: 50160614--50160646 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
50160604 AAGAGTTTTG
50160614 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
50160647 CCTTTGAGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:50162008 original size:22 final size:22
Alignment explanation
Indices: 50161968--50162009 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
50161958 AATATGAAAT
*
50161968 ATAAAAAATATATTGGAATTAA
1 ATAAAAAATACATTGGAATTAA
* *
50161990 ATAAAAATTACATTTGAATT
1 ATAAAAAATACATTGGAATT
50162010 TTATATTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (22 bp):
ATAAAAAATACATTGGAATTAA
Found at i:50173245 original size:36 final size:36
Alignment explanation
Indices: 50173187--50173273 Score: 93
Period size: 36 Copynumber: 2.4 Consensus size: 36
50173177 GGGGACACCC
* * * * * *
50173187 AGGATATCCACCACATGGAGGACATCTTCCTCCCGG
1 AGGATATCCCCCTCATGGAGGACACCATCCACACGG
* * *
50173223 AGGGTATCCCCCTCATGTAGGACACCATCCACATGG
1 AGGATATCCCCCTCATGGAGGACACCATCCACACGG
50173259 AGGATATCCCCCTCA
1 AGGATATCCCCCTCA
50173274 GGGTTATCCT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.25, C:0.34, G:0.21, T:0.20
Consensus pattern (36 bp):
AGGATATCCCCCTCATGGAGGACACCATCCACACGG
Found at i:50176409 original size:32 final size:33
Alignment explanation
Indices: 50176367--50176430 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
50176357 ACAATTTAAC
*
50176367 AGAAATTGATTATA-GCACACCTCAC-TTGTCAG
1 AGAAACTGATTA-AGGCACACCTCACTTTGTCAG
*
50176399 AGAAACTGATTAAGGCACGCCTCACTTTGTCA
1 AGAAACTGATTAAGGCACACCTCACTTTGTCA
50176431 CGTAAATGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 1 0.04
32 21 0.75
33 6 0.21
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (33 bp):
AGAAACTGATTAAGGCACACCTCACTTTGTCAG
Found at i:50191685 original size:14 final size:14
Alignment explanation
Indices: 50191668--50191702 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
50191658 CTCACATTTC
*
50191668 TTTTCTTTTCTCCA
1 TTTTCTTTCCTCCA
50191682 TTTTCTTTCCTCCA
1 TTTTCTTTCCTCCA
50191696 TATTTCT
1 T-TTTCT
50191703 GCTTCTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.09, C:0.29, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTCTTTCCTCCA
Found at i:50194392 original size:16 final size:17
Alignment explanation
Indices: 50194373--50194404 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
50194363 TTATTAAATC
50194373 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
50194389 ATATATTTAATATTAA
1 ATATATTTAATATTAA
50194405 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:50194468 original size:66 final size:63
Alignment explanation
Indices: 50194397--50194609 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
50194387 AAATATATTT
50194397 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
50194461 AG
62 AG
* * * * * * *
50194463 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
50194523 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
50194583 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
50194610 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:50194483 original size:120 final size:120
Alignment explanation
Indices: 50194359--50194651 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
50194349 AATTATTTTA
* * *
50194359 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
50194422 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
50194479 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
50194544 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
50194599 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
50194652 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:50194511 original size:18 final size:17
Alignment explanation
Indices: 50194480--50194514 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50194470 ATTATTAAGA
50194480 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
50194497 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
50194515 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:50194628 original size:18 final size:17
Alignment explanation
Indices: 50194600--50194634 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50194590 ATTATTAAGA
*
50194600 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50194617 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50194635 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50194749 original size:147 final size:148
Alignment explanation
Indices: 50194588--50194946 Score: 657
Period size: 148 Copynumber: 2.4 Consensus size: 148
50194578 ATAAGAATAT
50194588 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
50194653 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATATTATTAAAATTTAAATAAAATAATTT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATATTATTAAAATTTAAATAAAATAATTT
50194717 ACCAAAACAAATTTCTGC
131 ACCAAAACAAATTTCTGC
*
50194735 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* *
50194800 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAAAATAATTT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATATTATTAAAATTTAAATAAAATAATTT
50194865 ACCAAAACAAATTTCTGC
131 ACCAAAACAAATTTCTGC
* *
50194883 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
50194947 ATTTTATATT
Statistics
Matches: 204, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
147 91 0.45
148 113 0.55
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (148 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATATTATTAAAATTTAAATAAAATAATTT
ACCAAAACAAATTTCTGC
Found at i:50194775 original size:18 final size:17
Alignment explanation
Indices: 50194747--50194781 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50194737 ATTATTAAGA
*
50194747 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50194764 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50194782 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50194926 original size:18 final size:17
Alignment explanation
Indices: 50194895--50194929 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50194885 ATTATTAAGA
50194895 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
50194912 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
50194930 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:50195020 original size:120 final size:121
Alignment explanation
Indices: 50194883--50195191 Score: 541
Period size: 120 Copynumber: 2.6 Consensus size: 121
50194873 AAATTTCTGC
* *
50194883 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTT-
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTC
**
50194947 ATTTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
66 AAATTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
*
50195003 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT-TTC
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTC
*
50195067 AAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
66 AAATTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
*
50195123 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTC
50195188 AAAT
66 AAAT
50195192 ATGATTAAAT
Statistics
Matches: 179, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
119 2 0.01
120 171 0.96
121 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (121 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTC
AAATTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
Found at i:50195043 original size:18 final size:17
Alignment explanation
Indices: 50195015--50195049 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50195005 ATTATTAAGA
*
50195015 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50195032 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50195050 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50195163 original size:18 final size:17
Alignment explanation
Indices: 50195135--50195169 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50195125 ATTATTAAGA
*
50195135 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50195152 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50195170 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50195307 original size:18 final size:17
Alignment explanation
Indices: 50195279--50195313 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50195269 ATTATTAAGA
*
50195279 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50195296 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50195314 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50209811 original size:46 final size:45
Alignment explanation
Indices: 50209744--50210041 Score: 187
Period size: 44 Copynumber: 6.8 Consensus size: 45
50209734 ATTATACAGG
*
50209744 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * *
50209790 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGT-A-A
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA-ATTCAGA
* * * * * *
50209834 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG------GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
* * * *
50209873 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATTCAGA
* *
50209914 TCTTATCTCCCTGATATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * ** * *
50209960 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATTCAGA
* * *
50210004 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
50210042 CACTATCCTA
Statistics
Matches: 197, Mismatches: 38, Indels: 37
0.72 0.14 0.14
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 23 0.12
40 1 0.01
41 27 0.14
42 1 0.01
43 1 0.01
44 70 0.36
45 1 0.01
46 69 0.35
47 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
Found at i:50210024 original size:44 final size:43
Alignment explanation
Indices: 50209957--50210122 Score: 156
Period size: 44 Copynumber: 3.8 Consensus size: 43
50209947 AAAGAATTTC
* *
50209957 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
*
50210000 GAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
1 -AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
** * * * * *
50210044 CTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAA
1 AGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGA-CA
* * * *
50210087 AGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGAT
1 A-GATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
50210123 CGCGTCGAGT
Statistics
Matches: 98, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
42 4 0.04
43 29 0.30
44 65 0.66
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (43 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
Found at i:50210054 original size:87 final size:87
Alignment explanation
Indices: 50209963--50210124 Score: 209
Period size: 87 Copynumber: 1.9 Consensus size: 87
50209953 TTTCAGATCT
* * * *
50209963 TATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGCGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
50210027 GGAGCAGATCGAAGACACTATCC
65 AGAGCAGATCGAAGACACTATCC
* * * * *
50210050 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGCGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
*
50210115 GAGTAGATCG
66 GAGCAGATCG
50210125 CGTCGAGTCT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
87 61 0.97
88 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGCGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAAGACACTATCC
Found at i:50215359 original size:61 final size:61
Alignment explanation
Indices: 50215280--50215400 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
50215270 GTCTACTAGT
50215280 TTGCCAAGACGAGAAGACGGAGTTGAAGGTCCGGATAACTGAACTAGAAAGATCACTTCAA
1 TTGCCAAGACGAGAAGACGGAGTTGAAGGTCCGGATAACTGAACTAGAAAGATCACTTCAA
* *
50215341 TTGCCAAGACGATAAGACGGAGTTGAAGGTCCGGATAACTGAACTAGAAAGATCGCTTCA
1 TTGCCAAGACGAGAAGACGGAGTTGAAGGTCCGGATAACTGAACTAGAAAGATCACTTCA
50215401 CCAGTACTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.19
Consensus pattern (61 bp):
TTGCCAAGACGAGAAGACGGAGTTGAAGGTCCGGATAACTGAACTAGAAAGATCACTTCAA
Found at i:50224403 original size:46 final size:45
Alignment explanation
Indices: 50224336--50224720 Score: 202
Period size: 44 Copynumber: 8.8 Consensus size: 45
50224326 ATTATACAGG
* *
50224336 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTTAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * *
50224382 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGT-A-A
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA-ATTCAGA
* * * * * *
50224426 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG------GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
* * * *
50224465 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATTCAGA
*
50224506 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * ** * *
50224552 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATTCAGA
* * * *
50224596 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCA-GA
* * * * **
50224639 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAA-AATAAGAGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGAAT-TCAGA
* * * *
50224683 TCTTATCCCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
50224721 CACTATCCTA
Statistics
Matches: 264, Mismatches: 49, Indels: 52
0.72 0.13 0.14
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 23 0.09
40 1 0.00
41 27 0.10
42 7 0.03
43 29 0.11
44 96 0.36
45 5 0.02
46 72 0.27
47 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
Found at i:50224646 original size:87 final size:83
Alignment explanation
Indices: 50224506--50224798 Score: 338
Period size: 87 Copynumber: 3.4 Consensus size: 83
50224496 TCACATCAGG
* * * * * * *
50224506 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTTCAGATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA---C-TATCCTATCTCCCTGAAGTT
*
50224570 ACAGTGGAGCAGATTGAAGCCAGAGA
62 ACAGTGGAGCGGATT-AA---AGAGA
50224596 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
50224661 TGGAGCGGATTAAAATAAGAGA
66 TGGAGCGGATT---A-AAGAGA
* *
50224683 TCTTATCCCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACGG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
50224748 TGGAGCGGATTAAAG-GA
66 TGGAGCGGATTAAAGAGA
* * * *
50224765 TCTTATCTCTCTGAGGTTACAGCAGAGTAGATCG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCG
50224799 CATCAAGTCT
Statistics
Matches: 183, Mismatches: 16, Indels: 16
0.85 0.07 0.07
Matches are distributed among these distances:
82 31 0.17
83 3 0.02
84 1 0.01
87 110 0.60
88 1 0.01
89 1 0.01
90 35 0.19
91 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (83 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
TGGAGCGGATTAAAGAGA
Found at i:50224660 original size:43 final size:44
Alignment explanation
Indices: 50224549--50224745 Score: 179
Period size: 44 Copynumber: 4.5 Consensus size: 44
50224539 AAAGAATTTC
* * * * *
50224549 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCCTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGACAG
*
50224593 AGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCCTATCTCCCTGAAG-TTACAGCGGAGCAGATCGAAGACAG
** * * * * *
50224636 CTATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAATAAG
1 AGATCCTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGA-CAG
* *
50224680 AGATCTTATCCCCCTG-AGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCCTATCTCCCTGAAG-TTACAGCGGAGCAGATCGAAGACAG
**
50224723 CTATCCTATCTCCCTGAAGTTAC
1 AGATCCTATCTCCCTGAAGTTAC
50224746 GGTGGAGCGG
Statistics
Matches: 121, Mismatches: 25, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
42 3 0.02
43 47 0.39
44 68 0.56
45 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (44 bp):
AGATCCTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGACAG
Found at i:50225365 original size:15 final size:16
Alignment explanation
Indices: 50225345--50225411 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 16
50225335 CAACTAGCCT
50225345 AACCCAAT-ACCCACA
1 AACCCAATAACCCACA
50225360 AACCCAATAACCCAACTA
1 AACCCAATAACCC-AC-A
50225378 GCCTAACCCAAT-ACCCACA
1 ----AACCCAATAACCCACA
50225397 AACCCAATAACCCAC
1 AACCCAATAACCCAC
50225412 CTAAACACTA
Statistics
Matches: 44, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
15 16 0.36
16 10 0.23
17 2 0.05
18 1 0.02
19 1 0.02
20 2 0.05
21 4 0.09
22 8 0.18
ACGTcount: A:0.45, C:0.45, G:0.01, T:0.09
Consensus pattern (16 bp):
AACCCAATAACCCACA
Found at i:50225374 original size:37 final size:37
Alignment explanation
Indices: 50225333--50225410 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
50225323 ACTACCCAGG
50225333 CCCAACTAGCCTAACCCAATACCCACAAACCCAATAA
1 CCCAACTAGCCTAACCCAATACCCACAAACCCAATAA
50225370 CCCAACTAGCCTAACCCAATACCCACAAACCCAATAA
1 CCCAACTAGCCTAACCCAATACCCACAAACCCAATAA
50225407 CCCA
1 CCCA
50225411 CCTAAACACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.42, C:0.45, G:0.03, T:0.10
Consensus pattern (37 bp):
CCCAACTAGCCTAACCCAATACCCACAAACCCAATAA
Found at i:50229152 original size:88 final size:88
Alignment explanation
Indices: 50229036--50229696 Score: 721
Period size: 88 Copynumber: 7.6 Consensus size: 88
50229026 AGATCTGGTT
* * * * * ** *
50229036 TCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCCACTATCTTCAACTAGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
50229101 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * * * *
50229124 TCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACCAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
*
50229189 AACCGAGAGAGGCAAGGTTTGCG
66 AACCGAGAGAGGCAAGGTTTGTG
* * **
50229212 TCTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGCTATTTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
*
50229277 ACCCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * * * *
50229300 TCTTCGATCTGCTTCGCTGTTAATGTAGGAATGCAAGATCTGCTATCTTTAAACAGCTCCATTGC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
*
50229365 AACCAATG-GAGGCAAGGTTT-TG
66 AACCGA-GAGAGGCAAGGTTTGTG
* * * * * * * * * *
50229387 TTTTTGATCTGCATCGCTGTTAATGTAGGAATGCAAGATCTGCTATCTTTAAACAGCTCTATTGC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
*
50229452 AACCAATG-GAGGCAAGGTTT-TG
66 AACCGA-GAGAGGCAAGGTTTGTG
* * * * **
50229474 TTTTTGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGT
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
* * *
50229538 AACCAATGA-AGGCAAAGCTTGT-
66 AACCGA-GAGAGGCAAGGTTTGTG
* ** * *
50229560 T-TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTA-TCA
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACT-A
*
50229623 CAACCGAAAGAGGCAAGGTTTGTG
65 CAACCGAGAGAGGCAAGGTTTGTG
* *
50229647 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG-TAACTTCA
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCA
50229697 TTGATCTGTC
Statistics
Matches: 500, Mismatches: 65, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
85 39 0.08
86 64 0.13
87 135 0.27
88 261 0.52
89 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
AACCGAGAGAGGCAAGGTTTGTG
Found at i:50229158 original size:44 final size:44
Alignment explanation
Indices: 50229110--50229248 Score: 106
Period size: 44 Copynumber: 3.2 Consensus size: 44
50229100 CAACCGAGAG
50229110 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
* * * * ** *
50229154 AGGCAAGATCTGTTGTCTTCAACCAGC-TC-C-ACCACA-ACCGAGA
1 AGGCAAGGTTTG-TGTCTTCGACCTGCTTCGCTGTCA-ATACAG-GA
* * * * *
50229197 GAGGCAAGGTTTGCGTCTTCGATCTGCTTCGTTGTTAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
50229242 AGGCAAG
1 AGGCAAG
50229249 ATCTGCTATT
Statistics
Matches: 68, Mismatches: 19, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
42 5 0.07
43 14 0.21
44 31 0.46
45 15 0.22
46 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
Found at i:50234038 original size:19 final size:20
Alignment explanation
Indices: 50234009--50234057 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
50233999 CACTTCGTGA
* *
50234009 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
50234028 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
50234048 AAATG-AATGC
1 AAATGTAATGC
50234058 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:50246564 original size:11 final size:11
Alignment explanation
Indices: 50246487--50246577 Score: 50
Period size: 11 Copynumber: 8.5 Consensus size: 11
50246477 CTTTAATGTA
*
50246487 AATATTAAAAT
1 AATATAAAAAT
* *
50246498 AATGTTAAAAT
1 AATATAAAAAT
50246509 AATTATATAAAA-
1 AA-TATA-AAAAT
*
50246521 AATTTAATAAAT
1 AATATAA-AAAT
*
50246533 AA-A-AAATATT
1 AATATAAA-AAT
*
50246543 AA-ATTAAAAT
1 AATATAAAAAT
50246553 AATATAAAAAT
1 AATATAAAAAT
50246564 -ATA-AAAAAT
1 AATATAAAAAT
50246573 AATAT
1 AATAT
50246578 GGGGCAAACT
Statistics
Matches: 62, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
9 7 0.11
10 18 0.29
11 27 0.44
12 6 0.10
13 4 0.06
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (11 bp):
AATATAAAAAT
Found at i:50246576 original size:23 final size:23
Alignment explanation
Indices: 50246513--50246576 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 23
50246503 TAAAATAATT
50246513 ATATAAAAAATTTAATAAATAAAAA
1 ATATAAAAAA--TAATAAATAAAAA
*
50246538 ATATTAAATTAA-AAT-AATATAAAA
1 ATA-TAAA-AAATAATAAATA-AAAA
50246562 ATATAAAAAATAATA
1 ATATAAAAAATAATA
50246577 TGGGGCAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
22 2 0.06
23 11 0.34
24 10 0.31
25 3 0.09
26 4 0.12
27 2 0.06
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
ATATAAAAAATAATAAATAAAAA
Found at i:50247357 original size:16 final size:16
Alignment explanation
Indices: 50247305--50247360 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
50247295 TAAAATCAAT
50247305 CAAATTAATTTAATTA
1 CAAATTAATTTAATTA
* *
50247321 CAAA-T-ATTGAAAT-
1 CAAATTAATTTAATTA
*
50247334 C-GATTAATTTAATTA
1 CAAATTAATTTAATTA
50247349 CAAATTAATTTA
1 CAAATTAATTTA
50247361 TTTGTTTCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
12 1 0.03
13 2 0.07
14 12 0.40
15 2 0.07
16 13 0.43
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (16 bp):
CAAATTAATTTAATTA
Found at i:50247979 original size:26 final size:26
Alignment explanation
Indices: 50247950--50248008 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
50247940 AAGTGACGTA
*
50247950 GAAAAGTACCTTTT-AGAAGTATTTTG
1 GAAAAGTA-CTTTTCAGAAGTACTTTG
50247976 GAAAAGTACTTTTCAGAAGTACTTTG
1 GAAAAGTACTTTTCAGAAGTACTTTG
50248002 GAAAAGT
1 GAAAAGT
50248009 TTAATTTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 5 0.16
26 26 0.84
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.34
Consensus pattern (26 bp):
GAAAAGTACTTTTCAGAAGTACTTTG
Found at i:50250480 original size:30 final size:28
Alignment explanation
Indices: 50250446--50250545 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 28
50250436 AAAAATTTTG
* *
50250446 CATTTTAACACCTGAACTTTTCTAAAATTA
1 CATTTTAACCCCT-AA-TTTTATAAAATTA
* *
50250476 CATTTTGACCCCTAATTTTTTCAAAATTA
1 CATTTTAACCCCTAATTTTAT-AAAATTA
*
50250505 CATTTAAACCCCTAAAATTTTAT-AAATTA
1 CATTTTAACCCCT--AATTTTATAAAATTA
*
50250534 CATTTTGACCCC
1 CATTTTAACCCC
50250546 GAAAATTTCT
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
28 5 0.08
29 36 0.61
30 11 0.19
31 7 0.12
ACGTcount: A:0.35, C:0.22, G:0.03, T:0.40
Consensus pattern (28 bp):
CATTTTAACCCCTAATTTTATAAAATTA
Found at i:50250504 original size:29 final size:29
Alignment explanation
Indices: 50250463--50250576 Score: 122
Period size: 29 Copynumber: 3.9 Consensus size: 29
50250453 ACACCTGAAC
**
50250463 TTTTCTAAAATTACATTTTGACCCCTAATT
1 TTTTC-AAAATTACATTTTGACCCCTAAAA
**
50250493 TTTTCAAAATTACATTTAAACCCCTAAAA
1 TTTTCAAAATTACATTTTGACCCCTAAAA
*
50250522 TTTT-ATAAATTACATTTTGACCCCGAAAA
1 TTTTCA-AAATTACATTTTGACCCCTAAAA
* * *
50250551 TTTCTCAAACTAATATTTTGACCCCT
1 TTT-TCAAAATTACATTTTGACCCCT
50250577 CAACTTCCTA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 1 0.01
29 47 0.67
30 21 0.30
31 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (29 bp):
TTTTCAAAATTACATTTTGACCCCTAAAA
Found at i:50250956 original size:10 final size:10
Alignment explanation
Indices: 50250941--50251002 Score: 67
Period size: 10 Copynumber: 6.3 Consensus size: 10
50250931 AGGGTTTCCG
50250941 AAAGAAGAAA
1 AAAGAAGAAA
*
50250951 AAAGAAGAAG
1 AAAGAAGAAA
*
50250961 GAAGAAGAAGA
1 AAAGAAGAA-A
50250972 AAAGAA-AAA
1 AAAGAAGAAA
50250981 GAAAGAA-AAA
1 -AAAGAAGAAA
50250991 AAA-AAGAAA
1 AAAGAAGAAA
50251000 AAA
1 AAA
50251003 NTTTCAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
8 2 0.04
9 10 0.22
10 28 0.62
11 5 0.11
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAGAAGAAA
Found at i:50250976 original size:21 final size:20
Alignment explanation
Indices: 50250940--50251001 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
50250930 TAGGGTTTCC
*
50250940 GAAAGAAGAAAAAAGAAGAA
1 GAAAGAAGAAAAAAGAAAAA
*
50250960 GGAAGAAGAAGAAAAGAAAAA
1 GAAAGAAGAA-AAAAGAAAAA
*
50250981 GAAAGAAAAAAAAAAGAAAAA
1 GAAAG-AAGAAAAAAGAAAAA
50251002 ANTTTCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 9 0.25
21 23 0.64
22 4 0.11
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
GAAAGAAGAAAAAAGAAAAA
Found at i:50251027 original size:20 final size:19
Alignment explanation
Indices: 50251004--50251086 Score: 75
Period size: 17 Copynumber: 4.5 Consensus size: 19
50250994 AAGAAAAAAN
50251004 TTTCAAAAAAAATTCTCGTG
1 TTTCAAAAAAAATT-TCGTG
*
50251024 TTTC--AAAAAATGTCGTG
1 TTTCAAAAAAAATTTCGTG
*
50251041 TTTTAAAAAAGAATTTCGTG
1 TTTCAAAAAA-AATTTCGTG
* **
50251061 TTTC--TAAAGTTTTCGTG
1 TTTCAAAAAAAATTTCGTG
50251078 TTTCAAAAA
1 TTTCAAAAA
50251087 TTTCGTTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
17 19 0.38
18 10 0.20
19 6 0.12
20 15 0.30
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (19 bp):
TTTCAAAAAAAATTTCGTG
Found at i:50251077 original size:37 final size:37
Alignment explanation
Indices: 50251004--50251086 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 37
50250994 AAGAAAAAAN
50251004 TTTCAAAAAAAATTCTCGTGTTTCAAAAAATGTCGTG
1 TTTCAAAAAAAATTCTCGTGTTTCAAAAAATGTCGTG
* * ** *
50251041 TTTTAAAAAAGAATT-TCGTGTTTCTAAAGTTTTCGTG
1 TTTCAAAAAA-AATTCTCGTGTTTCAAAAAATGTCGTG
50251078 TTTCAAAAA
1 TTTCAAAAA
50251087 TTTCGTTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 35 0.90
38 4 0.10
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (37 bp):
TTTCAAAAAAAATTCTCGTGTTTCAAAAAATGTCGTG
Found at i:50262972 original size:71 final size:73
Alignment explanation
Indices: 50262801--50263397 Score: 418
Period size: 78 Copynumber: 7.8 Consensus size: 73
50262791 CTGTTTTTTT
* * ** *
50262801 AAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCGG-GTCATGCCGAGGTATTTCGTTTACA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTA-A
* **
50262865 TTTCTGTTCTTTT
65 -AT-T-TT-TTAA
* * * *
50262878 TAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGACACATGCCGTGGTATTTCTTTTAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAA
*
50262943 -TTTTT-G
66 TTTTTTAA
50262949 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAA
*
50263014 TTTCTGTTCTTCA
66 --T-T-TT-TTAA
* * *
50263027 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCGTTTAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAA
50263092 TTTCTGTTTTTCAAAA
66 ----T-TTTTT---AA
* * *
50263108 AAAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCGAGTCACATGCCGAGGTATTTCTTTTAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GACACATGCCGAGGTATTTCTTTTAA
50263173 ATTTCGTATTTTCAAA
65 A--T--T-TTTT--AA
* * ** * * *
50263189 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-TGAGTCATGTCGAGGTA-TT-TTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAA
**
50263251 TGCTGTTTTTC
66 T--T-TTTTAA
* * * * *
50263262 AAAATTAACTCATAATGCGAGAGATGAGATGAGCCTCGGGTCACATGCCGAGGTA--TCTTTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACATGCCGAGGTATTTCTTTT-A
*
50263325 ATTTCTGTTTTCCAAA
64 A-AT-T-TTTT---AA
* * * * * * *
50263341 AAAATCAACTCATAATGCTAAATGTGAGTTGAGCCTCGGGCCACACGCCGAGCTATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACATGCCGAGGTATT
50263398 CTCGATTTCA
Statistics
Matches: 429, Mismatches: 65, Indels: 48
0.79 0.12 0.09
Matches are distributed among these distances:
71 61 0.14
72 2 0.00
73 33 0.08
74 2 0.00
75 22 0.05
76 11 0.03
77 44 0.10
78 85 0.20
79 60 0.14
80 5 0.01
81 74 0.17
82 30 0.07
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAA
TTTTTTAA
Found at i:50263071 original size:149 final size:150
Alignment explanation
Indices: 50262795--50263397 Score: 600
Period size: 149 Copynumber: 3.9 Consensus size: 150
50262785 CAATTTCTGT
* *
50262795 TTTTTTAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCGGGT--CATGCCGAGGTATTTC
1 TTTTTAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTC
* * *** * * * *
50262858 GTTTACATTTCTGTTCTT-TTTAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGACACA
65 TTTTAAATTTCTGTTCTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGTCACA
*
50262922 TGCCGTGGTATTTCTTTTAAA
130 TGCCGAGGTATTTCTTTTAAA
* * *
50262943 TTTTTGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCT
1 TTTTTAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCT
50263008 TTTAAATTTCTGTTCTTC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGTCACAT
66 TTTAAATTTCTGTTCTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGTCACAT
*
50263072 GCCGAGGTATTTCGTTTAAA
131 GCCGAGGTATTTCTTTTAAA
*
50263092 TTTCTGTTTTTCAAAAAAAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCGAGTCACATGCC
1 ------TTTTT----AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCG-GTCACATGCC
*
50263157 GAGGTATTTCTTTTAAATTTC-GTATTTTCAAAAAAATCAACTCATATTGC-AAGAGGTGAGTTG
55 GAGGTATTTCTTTTAAATTTCTGT-TCTTC-AAAAAATCAACTCATATTGCGAA-AGGTGAGTTG
* * ***
50263220 AGCCTTGAGT--CATGTCGAGGTATTT-TTCAATTGCTG
117 AGCCTCG-GTCACATGCCGAGGTATTTCTT---TT-AAA
* * * *
50263256 TTTTTCAAAATTAACTCATAATGCGAGAGATGAGATGAGCCTCGGGTCACATGCCGAGGTA--TC
1 TTTTTAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTC
* * * * *
50263319 TTTTCAATTTCTGTT-TTCCAAAAAAATCAACTCATAATGCTAAATGTGAGTTGAGCCTCGGGCC
65 TTTTAAATTTCTGTTCTT-C-AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC-GGTC
* *
50263383 ACACGCCGAGCTATT
127 ACATGCCGAGGTATT
50263398 CTCGATTTCA
Statistics
Matches: 387, Mismatches: 38, Indels: 54
0.81 0.08 0.11
Matches are distributed among these distances:
147 2 0.01
148 40 0.10
149 90 0.23
151 2 0.01
152 49 0.13
153 5 0.01
154 60 0.16
155 6 0.02
158 5 0.01
159 38 0.10
160 35 0.09
161 16 0.04
162 35 0.09
163 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (150 bp):
TTTTTAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCT
TTTAAATTTCTGTTCTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGTCACAT
GCCGAGGTATTTCTTTTAAA
Found at i:50263190 original size:81 final size:80
Alignment explanation
Indices: 50262949--50263397 Score: 537
Period size: 81 Copynumber: 5.7 Consensus size: 80
50262939 TAAATTTTTG
* *
50262949 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAA
1 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAA
*
50263014 TTTCTGTTCTTC--A
66 TTTCTGTTTTTCAAA
* * *
50263027 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCGTTTAAA
1 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAA
50263092 TTTCTGTTTTTCAAAA
66 TTTCTGTTTTTC-AAA
*
50263108 AAAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCGAGTCACATGCCGAGGTATTTCTTTTAA
1 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCG-GTCACATGCCGAGGTATTTCTTTTAA
50263173 ATTTC-GTATTTTCAAA
65 ATTTCTGT-TTTTCAAA
* * * * *
50263189 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGAGT--CATGTCGAGGTA--T-TTTTCA
1 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCG-GTCACATGCCGAGGTATTTCTTTTAA
*
50263249 ATTGCTGTTTTTC---
65 ATTTCTGTTTTTCAAA
* * * *
50263262 AAAATTAACTCATAATGCGAGAGATGAGATGAGCCTCGGGTCACATGCCGAGGTA--TCTTTTCA
1 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAA
*
50263325 ATTTCTGTTTTCCAAA
65 ATTTCTGTTTTTCAAA
* * * * * *
50263341 AAAATCAACTCATAATGCTAAATGTGAGTTGAGCCTCGGGCCACACGCCGAGCTATT
1 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATT
50263398 CTCGATTTCA
Statistics
Matches: 323, Mismatches: 33, Indels: 27
0.84 0.09 0.07
Matches are distributed among these distances:
73 33 0.10
74 1 0.00
75 12 0.04
76 31 0.10
77 3 0.01
78 73 0.23
79 57 0.18
81 78 0.24
82 35 0.11
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (80 bp):
AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAA
TTTCTGTTTTTCAAA
Found at i:50263600 original size:30 final size:30
Alignment explanation
Indices: 50263565--50263734 Score: 145
Period size: 30 Copynumber: 5.7 Consensus size: 30
50263555 AAAAAATTTG
*
50263565 CATTTTGACCCCTGAACTTTTCTAAAATTA
1 CATTTTGACCCCTAAACTTTTCTAAAATTA
* * ** *
50263595 CATTTTGGCCCTTAATTTTTTTTCAAAATTA
1 CATTTTGACCCCTAAACTTTTCT-AAAATTA
* *
50263626 CA-TTTCAACCCTAAACTTTTCT-AAATTA
1 CATTTTGACCCCTAAACTTTTCTAAAATTA
50263654 CATTTTGA-CCCTATAA--TTTCTTAAAATTA
1 CATTTTGACCCCTA-AACTTTTC-TAAAATTA
*
50263683 CATTTTGACCCCTAAAC-TTCCTCAAAATTA
1 CATTTTGACCCCTAAACTTTTCT-AAAATTA
* * **
50263713 CGTTTCGACCCAAAAACTTTTC
1 CATTTTGACCCCTAAACTTTTC
50263735 CTGCATTTGC
Statistics
Matches: 111, Mismatches: 20, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
27 4 0.04
28 14 0.13
29 23 0.21
30 58 0.52
31 12 0.11
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.41
Consensus pattern (30 bp):
CATTTTGACCCCTAAACTTTTCTAAAATTA
Found at i:50263614 original size:29 final size:29
Alignment explanation
Indices: 50263565--50263693 Score: 127
Period size: 29 Copynumber: 4.4 Consensus size: 29
50263555 AAAAAATTTG
* *
50263565 CATTTTGACCCCTGAACTTTTCTAAAATTA
1 CATTTTGA-CCCTTAATTTTTCTAAAATTA
* *
50263595 CATTTTGGCCCTTAATTTTTTTTCAAAATTA
1 CATTTTGACCCTTAA-TTTTTCT-AAAATTA
** * *
50263626 CATTTCAACCCTAAACTTTTCT-AAATTA
1 CATTTTGACCCTTAATTTTTCTAAAATTA
*
50263654 CATTTTGACCCTATAATTTCT-TAAAATTA
1 CATTTTGACCCT-TAATTTTTCTAAAATTA
50263683 CATTTTGACCC
1 CATTTTGACCC
50263694 CTAAACTTCC
Statistics
Matches: 80, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
28 17 0.21
29 28 0.35
30 17 0.21
31 18 0.22
ACGTcount: A:0.30, C:0.22, G:0.05, T:0.43
Consensus pattern (29 bp):
CATTTTGACCCTTAATTTTTCTAAAATTA
Found at i:50263654 original size:28 final size:28
Alignment explanation
Indices: 50263614--50263734 Score: 100
Period size: 28 Copynumber: 4.2 Consensus size: 28
50263604 CCTTAATTTT
50263614 TTTTCAAAATTACATTTCAACCCTAAAC
1 TTTTCAAAATTACATTTCAACCCTAAAC
* **
50263642 TTTTCTAAATTACATTTTGACCCTATAA-
1 TTTTCAAAATTACATTTCAACCCTA-AAC
* * *
50263670 TTTCTTAAAATTACATTTTGACCCCTAAAC
1 TTT-TCAAAATTACA-TTTCAACCCTAAAC
* * * *
50263700 TTCCTCAAAATTACGTTTCGACCCAAAAAC
1 TT-TTCAAAATTACATTTCAACCC-TAAAC
50263730 TTTTC
1 TTTTC
50263735 CTGCATTTGC
Statistics
Matches: 71, Mismatches: 16, Indels: 11
0.72 0.16 0.11
Matches are distributed among these distances:
28 25 0.35
29 21 0.30
30 25 0.35
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (28 bp):
TTTTCAAAATTACATTTCAACCCTAAAC
Found at i:50263711 original size:59 final size:59
Alignment explanation
Indices: 50263565--50263723 Score: 180
Period size: 59 Copynumber: 2.7 Consensus size: 59
50263555 AAAAAATTTG
* * *
50263565 CATTTTGACCCCTGAACTTTTCTAAAATTACATTTTGGCCCTTAATTTTTTTTCAAAATTA
1 CATTTTGACCCCTAAACTTTTC-AAAATTACATTTTGACCCTTAA-TTTTCTTCAAAATTA
* * *
50263626 CA-TTTCAACCCTAAACTTTTCTAAATTACATTTTGACCCTATAA-TTTCTT-AAAATTA
1 CATTTTGACCCCTAAACTTTTCAAAATTACATTTTGACCCT-TAATTTTCTTCAAAATTA
* * *
50263683 CATTTTGACCCCTAAACTTCCTCAAAATTACGTTTCGACCC
1 CATTTTGACCCCTAAACTT-TTCAAAATTACATTTTGACCC
50263724 AAAAACTTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
57 9 0.11
58 19 0.23
59 34 0.41
60 19 0.23
61 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.05, T:0.41
Consensus pattern (59 bp):
CATTTTGACCCCTAAACTTTTCAAAATTACATTTTGACCCTTAATTTTCTTCAAAATTA
Found at i:50263921 original size:185 final size:183
Alignment explanation
Indices: 50263612--50263961 Score: 533
Period size: 185 Copynumber: 1.9 Consensus size: 183
50263602 GCCCTTAATT
* * * * * *
50263612 TTTTTTCAAAATTACATTTCAACCCTAAACTTTTCTAAATTACATTTTGACCCTATAATTTCTTA
1 TTTTTTCAAAATTACATTTAAACCCTAAAATTTTATAAATTACATTTTGACCCGAAAATTTCTCA
*
50263677 AAATTACATTTTGACCCCTAAACTTCCTCAAAATTACGTTTCGACCCAAAAACTTTTCCTGCATT
66 AAATAACATTTTGACCCCTAAACTTCCTCAAAATTACGTTTCGACCCAAAAACTTTTCCTGCATT
50263742 TGCAGTTTAGTCCTTCTGGCAGCAACTTGCACACCTACCATTTTGACCCCTAA
131 TGCAGTTTAGTCCTTCTGGCAGCAACTTGCACACCTACCATTTTGACCCCTAA
50263795 TTTTTTCAAAATTACATTTAAACCCCTAAAATTTTATAAATTACATTTTGACCCCGAAAATTTCT
1 TTTTTTCAAAATTACATTTAAA-CCCTAAAATTTTATAAATTACATTTTGA-CCCGAAAATTTCT
* * * * *
50263860 CAAACTAATATTTTGACCCCTCAACTTCCT-ATAAATTACGTTTTGGCCCCAAAAA-TTTTCCTG
64 CAAAATAACATTTTGACCCCTAAACTTCCTCA-AAATTACG-TTTCGACCCAAAAACTTTTCCTG
*
50263923 CGTTTGCAGTTTAGTCCTTCTGGCAGCAACTTGCACACC
127 CATTTGCAGTTTAGTCCTTCTGGCAGCAACTTGCACACC
50263962 GACCCCGTGA
Statistics
Matches: 150, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
183 21 0.14
184 27 0.18
185 90 0.60
186 12 0.08
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (183 bp):
TTTTTTCAAAATTACATTTAAACCCTAAAATTTTATAAATTACATTTTGACCCGAAAATTTCTCA
AAATAACATTTTGACCCCTAAACTTCCTCAAAATTACGTTTCGACCCAAAAACTTTTCCTGCATT
TGCAGTTTAGTCCTTCTGGCAGCAACTTGCACACCTACCATTTTGACCCCTAA
Found at i:50264260 original size:10 final size:10
Alignment explanation
Indices: 50264245--50264306 Score: 67
Period size: 10 Copynumber: 6.3 Consensus size: 10
50264235 AGGGTTTCCG
50264245 AAAGAAGAAA
1 AAAGAAGAAA
*
50264255 AAAGAAGAAG
1 AAAGAAGAAA
*
50264265 GAAGAAGAAGA
1 AAAGAAGAA-A
50264276 AAAGAA-AAA
1 AAAGAAGAAA
50264285 GAAAGAA-AAA
1 -AAAGAAGAAA
50264295 AAA-AAGAAA
1 AAAGAAGAAA
50264304 AAA
1 AAA
50264307 ATTAATTATA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
8 2 0.04
9 10 0.22
10 28 0.62
11 5 0.11
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAGAAGAAA
Found at i:50264280 original size:21 final size:20
Alignment explanation
Indices: 50264244--50264305 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
50264234 TAGGGTTTCC
*
50264244 GAAAGAAGAAAAAAGAAGAA
1 GAAAGAAGAAAAAAGAAAAA
*
50264264 GGAAGAAGAAGAAAAGAAAAA
1 GAAAGAAGAA-AAAAGAAAAA
*
50264285 GAAAGAAAAAAAAAAGAAAAA
1 GAAAG-AAGAAAAAAGAAAAA
50264306 AATTAATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 9 0.25
21 23 0.64
22 4 0.11
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
GAAAGAAGAAAAAAGAAAAA
Found at i:50264306 original size:11 final size:11
Alignment explanation
Indices: 50264275--50264307 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
50264265 GAAGAAGAAG
50264275 AAAAG-AAAAA
1 AAAAGAAAAAA
*
50264285 GAAAGAAAAAA
1 AAAAGAAAAAA
50264296 AAAAGAAAAAA
1 AAAAGAAAAAA
50264307 A
1 A
50264308 TTAATTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:50264515 original size:18 final size:18
Alignment explanation
Indices: 50264494--50264550 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
50264484 AACTTGCAAA
50264494 AAAAAGAAAAAGAAGAGG
1 AAAAAGAAAAAGAAGAGG
50264512 AAAAAGGAGAGAAAG-AGAGG
1 AAAAA-GA-A-AAAGAAGAGG
* * *
50264532 AGAAAGGAGAAGAAGAGG
1 AAAAAGAAAAAGAAGAGG
50264550 A
1 A
50264551 GGGCTTCCGA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.09
18 12 0.38
19 3 0.09
20 10 0.31
21 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAGAAGAGG
Found at i:50264530 original size:20 final size:21
Alignment explanation
Indices: 50264502--50264541 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
50264492 AAAAAAAGAA
50264502 AAAGAAGAGGAAAAAGGAGAG
1 AAAGAAGAGGAAAAAGGAGAG
*
50264523 AAAG-AGAGGAGAAAGGAGA
1 AAAGAAGAGGAAAAAGGAGA
50264542 AGAAGAGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (21 bp):
AAAGAAGAGGAAAAAGGAGAG
Found at i:50264551 original size:18 final size:18
Alignment explanation
Indices: 50264503--50264551 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
50264493 AAAAAAGAAA
*
50264503 AAGAAGAGGAAAAAGGAG
1 AAGAAGAGGAGAAAGGAG
*
50264521 AGAAAGAGAGGAGAAAGGAG
1 A-AGA-AGAGGAGAAAGGAG
50264541 AAGAAGAGGAG
1 AAGAAGAGGAG
50264552 GGCTTCCGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 8 0.31
19 4 0.15
20 14 0.54
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (18 bp):
AAGAAGAGGAGAAAGGAG
Found at i:50264645 original size:10 final size:10
Alignment explanation
Indices: 50264630--50264679 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
50264620 AGGGTTTCCG
50264630 AAAGAAGAAA
1 AAAGAAGAAA
*
50264640 AAAGAAGGAA
1 AAAGAAGAAA
* *
50264650 GAAGAAGAAG
1 AAAGAAGAAA
50264660 AAAGAA-AAA
1 AAAGAAGAAA
50264669 AAAGAA-AAA
1 AAAGAAGAAA
50264678 AA
1 AA
50264680 TTATTATAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
9 13 0.38
10 21 0.62
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (10 bp):
AAAGAAGAAA
Found at i:50269955 original size:33 final size:33
Alignment explanation
Indices: 50269903--50269978 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
50269893 ACACAATTAT
* *
50269903 ATATATAAAATTTTAATTTTGATTCAAATATAC
1 ATATAAAAAATTTTAATTTTAATTCAAATATAC
*
50269936 ATATAAAATAATTTT-ATTTTAATTCAATTATAC
1 ATATAAAA-AATTTTAATTTTAATTCAAATATAC
50269969 AT-TAAAAAAT
1 ATATAAAAAAT
50269979 ATATCAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
31 3 0.08
32 5 0.13
33 25 0.64
34 6 0.15
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (33 bp):
ATATAAAAAATTTTAATTTTAATTCAAATATAC
Found at i:50270052 original size:23 final size:25
Alignment explanation
Indices: 50270015--50270065 Score: 63
Period size: 23 Copynumber: 2.1 Consensus size: 25
50270005 AAATATAATT
50270015 ATTTATATATAATAT-ACAAATCTAA
1 ATTTATATATAATATCACAAAT-TAA
*
50270040 ATTTATA-AT-ATATCATAAATTAA
1 ATTTATATATAATATCACAAATTAA
50270063 ATT
1 ATT
50270066 AATTAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 10 0.42
24 7 0.29
25 7 0.29
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (25 bp):
ATTTATATATAATATCACAAATTAA
Found at i:50275771 original size:30 final size:31
Alignment explanation
Indices: 50275732--50275791 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
50275722 AGAGGTGGAA
* *
50275732 TGGGAAGGGAATAGAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
50275763 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
50275792 TAAAAAGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:50276402 original size:22 final size:22
Alignment explanation
Indices: 50276374--50276460 Score: 129
Period size: 22 Copynumber: 4.0 Consensus size: 22
50276364 GCACTAATGA
* *
50276374 ACAGAGAGCACAGAAGTGCTAT
1 ACAGAGAACACTGAAGTGCTAT
*
50276396 ACAGAGAACACTGAAGTGTTAT
1 ACAGAGAACACTGAAGTGCTAT
*
50276418 ACAGAGAACACTGAAGTGTTAT
1 ACAGAGAACACTGAAGTGCTAT
*
50276440 ACAGAGAACACTGATGTGCTA
1 ACAGAGAACACTGAAGTGCTA
50276461 AATATTAGAG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 60 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (22 bp):
ACAGAGAACACTGAAGTGCTAT
Found at i:50276495 original size:25 final size:25
Alignment explanation
Indices: 50276449--50276497 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
50276439 TACAGAGAAC
* *
50276449 ACTGATGTGCTAAATATTAGAGAGT
1 ACTGACGTGCTAAATATCAGAGAGT
50276474 ACTGACGTGCT-AATAATCAGAGAG
1 ACTGACGTGCTAAAT-ATCAGAGAG
50276498 CGCGCTAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (25 bp):
ACTGACGTGCTAAATATCAGAGAGT
Found at i:50277048 original size:225 final size:225
Alignment explanation
Indices: 50276657--50277106 Score: 900
Period size: 225 Copynumber: 2.0 Consensus size: 225
50276647 TTTAATTCAA
50276657 CAAATATAATTTCATCACATATCAAGACAATCCATTTCAATTGTAAAAAAAAAAACAATAATTCT
1 CAAATATAATTTCATCACATATCAAGACAATCCATTTCAATTGTAAAAAAAAAAACAATAATTCT
50276722 TACCTCAATCACTTACCATAACATTTAATTAAAAATACAACAATTAATAATTAGATTCGGATTAT
66 TACCTCAATCACTTACCATAACATTTAATTAAAAATACAACAATTAATAATTAGATTCGGATTAT
50276787 AGAAATACAGACCAGGAATTCCGAGCTATTCGACGTCGGCTATATTTTTTCCCTTTTTTAGTCGA
131 AGAAATACAGACCAGGAATTCCGAGCTATTCGACGTCGGCTATATTTTTTCCCTTTTTTAGTCGA
50276852 GAATTCCGGTACGACGCTAGCTACGGAATT
196 GAATTCCGGTACGACGCTAGCTACGGAATT
50276882 CAAATATAATTTCATCACATATCAAGACAATCCATTTCAATTGTAAAAAAAAAAACAATAATTCT
1 CAAATATAATTTCATCACATATCAAGACAATCCATTTCAATTGTAAAAAAAAAAACAATAATTCT
50276947 TACCTCAATCACTTACCATAACATTTAATTAAAAATACAACAATTAATAATTAGATTCGGATTAT
66 TACCTCAATCACTTACCATAACATTTAATTAAAAATACAACAATTAATAATTAGATTCGGATTAT
50277012 AGAAATACAGACCAGGAATTCCGAGCTATTCGACGTCGGCTATATTTTTTCCCTTTTTTAGTCGA
131 AGAAATACAGACCAGGAATTCCGAGCTATTCGACGTCGGCTATATTTTTTCCCTTTTTTAGTCGA
50277077 GAATTCCGGTACGACGCTAGCTACGGAATT
196 GAATTCCGGTACGACGCTAGCTACGGAATT
50277107 AAAAAAATTA
Statistics
Matches: 225, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
225 225 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (225 bp):
CAAATATAATTTCATCACATATCAAGACAATCCATTTCAATTGTAAAAAAAAAAACAATAATTCT
TACCTCAATCACTTACCATAACATTTAATTAAAAATACAACAATTAATAATTAGATTCGGATTAT
AGAAATACAGACCAGGAATTCCGAGCTATTCGACGTCGGCTATATTTTTTCCCTTTTTTAGTCGA
GAATTCCGGTACGACGCTAGCTACGGAATT
Found at i:50285212 original size:19 final size:19
Alignment explanation
Indices: 50285188--50285225 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
50285178 ATAATGCATG
50285188 TGAGCGTAGGAACAGAGAT
1 TGAGCGTAGGAACAGAGAT
50285207 TGAGCGTAGGAACAGAGAT
1 TGAGCGTAGGAACAGAGAT
50285226 ACAAAATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.37, T:0.16
Consensus pattern (19 bp):
TGAGCGTAGGAACAGAGAT
Found at i:50288326 original size:15 final size:15
Alignment explanation
Indices: 50288306--50288335 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50288296 AATATTTCAA
50288306 TATAAAAAAATTAAT
1 TATAAAAAAATTAAT
*
50288321 TATAAAAAATTTAAT
1 TATAAAAAAATTAAT
50288336 ATCGAGTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAAAAAATTAAT
Found at i:50288990 original size:17 final size:17
Alignment explanation
Indices: 50288964--50289006 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
50288954 TATTAATATT
*
50288964 ATTTATTATAATA-AATA
1 ATTTAATATAATATAA-A
50288981 ATTTAATATAATATAAA
1 ATTTAATATAATATAAA
*
50288998 AGTTAATAT
1 ATTTAATAT
50289007 TCAATATACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTTAATATAATATAAA
Found at i:50289584 original size:20 final size:20
Alignment explanation
Indices: 50289551--50289602 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
50289541 ATTTTTGAAT
50289551 TTTTATGAACTTTTAATAATTA
1 TTTT-TGAA-TTTTAATAATTA
* **
50289573 TTTTTGAATTTTATTTTTTA
1 TTTTTGAATTTTAATAATTA
50289593 TTTTTGAATT
1 TTTTTGAATT
50289603 ATTTATTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 19 0.70
21 4 0.15
22 4 0.15
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (20 bp):
TTTTTGAATTTTAATAATTA
Found at i:50307108 original size:3 final size:3
Alignment explanation
Indices: 50307095--50307131 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
50307085 AAATATAAGA
50307095 AAT ACAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50307132 CCGCGTAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:50307337 original size:17 final size:16
Alignment explanation
Indices: 50307315--50307352 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
50307305 AAGAGAAGAA
50307315 AAAAATAATAAATAAAT
1 AAAAATAATAAA-AAAT
50307332 AAAAATAATAAAAAAT
1 AAAAATAATAAAAAAT
50307348 AAAAA
1 AAAAA
50307353 AATTGAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAATAATAAAAAAT
Found at i:50307341 original size:20 final size:18
Alignment explanation
Indices: 50307313--50307354 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
50307303 AAAAGAGAAG
*
50307313 AAAAAAATAATAAATAAA
1 AAAAAAATAAAAAATAAA
50307331 TAAAAATAATAAAAAATAAA
1 -AAAAA-AATAAAAAATAAA
50307351 AAAA
1 AAAA
50307355 TTGAATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAAAATAAAAAATAAA
Found at i:50308886 original size:40 final size:40
Alignment explanation
Indices: 50308842--50308993 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
50308832 GTGTTTTTAG
*
50308842 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * **
50308882 TCTGCTCCACTATTGCTTAGGGAAATAAGATCTGTGGTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGCGA
*
50308924 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
50308964 TCTACTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
50308994 TTGTAATCTT
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 57 0.60
41 4 0.04
42 29 0.31
43 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:50308937 original size:82 final size:83
Alignment explanation
Indices: 50308826--50308994 Score: 268
Period size: 82 Copynumber: 2.0 Consensus size: 83
50308816 CATGGGGATG
* * * *
50308826 AGATTTGTGTTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGATCTGCTCCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
50308891 CTATTGCTTAGGGAAATA
66 CTACTGCTTAGGGAAATA
*
50308909 AGATCTGTGGTTTT-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGATCTACTCCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
50308973 CTACTGCTTAGGGAGATA
66 CTACTGCTTAGGGAAATA
50308991 AGAT
1 AGAT
50308995 TGTAATCTTC
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
82 67 0.85
83 12 0.15
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (83 bp):
AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
CTACTGCTTAGGGAAATA
Found at i:50308941 original size:42 final size:42
Alignment explanation
Indices: 50308826--50308994 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 42
50308816 CATGGGGATG
* * *
50308826 AGATTTGTGTTTTTAGTCTGCTCCACTACTACTTAGGGAGATA
1 AGATCTGTGGTTTT-GTCTGCTCCACTACTGCTTAGGGAGATA
* ** * *
50308869 AGA-CT-T-GATGCGATCTGCTCCACTATTGCTTAGGGAAATA
1 AGATCTGTGGTTTTG-TCTGCTCCACTACTGCTTAGGGAGATA
50308909 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATA
1 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATA
** ** *
50308951 AGA-CT-T-AATGCGATCTACTCCACTACTGCTTAGGGAGATA
1 AGATCTGTGGTTTTG-TCTGCTCCACTACTGCTTAGGGAGATA
50308991 AGAT
1 AGAT
50308995 TGTAATCTTC
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
39 3 0.03
40 58 0.57
41 5 0.05
42 30 0.29
43 6 0.06
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATA
Found at i:50309201 original size:132 final size:131
Alignment explanation
Indices: 50308965--50309361 Score: 421
Period size: 134 Copynumber: 3.0 Consensus size: 131
50308955 TTAATGCGAT
* * ** *
50308965 CTACTCCACTACTGCTTAGGGAGATAAGAT-TGTAATCTTCGATCTATTCCACTG--TTTCCCAG
1 CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAT-ACAG
** * * * *
50309027 GGA-AGTAGAACTACCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTC
65 GGAGA-TAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGTCTTC
*
50309091 AAC
129 GAC
50309094 CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAG
1 CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCC-AATACAG
* * * *
50309159 GGAGATAGAGTTATCGGCTTCAATGTATTCCACTGTAGTCAGGGAGGTAAAATCTGACATCTTTG
65 GGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGTCTTCG
50309224 AC
130 AC
* * * * * ** *
50309226 CTGCT--TC-GTTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCAA
1 CTACTCCACTATTG-C---T-TAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG-CCAA
* * *
50309288 TACAGGGAGATAGAGTTATCGGCTTCAACGTACTCCACTGTAGTTAGGGAGGTAAAGTCTGCCGT
60 TACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGT
50309353 CTTCGAC
125 CTTCGAC
50309360 CT
1 CT
50309362 GCAATCTATT
Statistics
Matches: 226, Mismatches: 31, Indels: 17
0.82 0.11 0.06
Matches are distributed among these distances:
129 32 0.14
130 25 0.11
132 61 0.27
133 3 0.01
134 103 0.46
135 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (131 bp):
CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAATACAGG
GAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGTCTTCGA
C
Found at i:50309678 original size:44 final size:43
Alignment explanation
Indices: 50309476--50309694 Score: 190
Period size: 45 Copynumber: 4.9 Consensus size: 43
50309466 CCAATACGTA
* *
50309476 AAGACAAGATCTGATTTCCTCGATCTACTTCGCCACCAATATAGA
1 AAGACAAGATCTGCTTT-CTCGATCTACTTC-CCACCAATATAGG
* * *
50309521 AAGATAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATGTGGG
1 AAGACAAGATCTGCTTT-CTCGATCTACTTC-CCACCAATATAGG
* * *
50309566 AAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGG
1 AAGACAAGATCTGCTTTC-TCGATCTACTTCCCACCAATATAGG
** * * *** * *
50309609 AAGACCGGACCTG-TTATCTTTGATCTACTTCATGCCAATACATG
1 AAGACAAGATCTGCTT-TC-TCGATCTACTTCCCACCAATATAGG
50309653 AAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
1 AAGACAAGATCTGCTTTCT-CGATCTACTTC-CCACCAATAT
50309695 GGGNNNNNNN
Statistics
Matches: 139, Mismatches: 29, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
43 22 0.16
44 56 0.40
45 61 0.44
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (43 bp):
AAGACAAGATCTGCTTTCTCGATCTACTTCCCACCAATATAGG
Found at i:50327964 original size:20 final size:20
Alignment explanation
Indices: 50327926--50327963 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
50327916 NNNNNNNNNN
50327926 AATAATAAATAAATAAAAAT
1 AATAATAAATAAATAAAAAT
50327946 AATAATAAA-AAATAAAAA
1 AATAATAAATAAATAAAAA
50327964 AATTGAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (20 bp):
AATAATAAATAAATAAAAAT
Found at i:50329232 original size:35 final size:35
Alignment explanation
Indices: 50329187--50329255 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
50329177 GGGTGTGTGA
*
50329187 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGAGAGAGTGGGAG
*
50329222 TGGTGTTGGTGGCAGACAGCATGAGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGAGAGAGTGGGA
50329256 AGAGGCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.22, C:0.10, G:0.49, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGAGAGAGTGGGAG
Found at i:50330690 original size:15 final size:15
Alignment explanation
Indices: 50330670--50330700 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50330660 GTATTGATTA
*
50330670 GAAATGTGTTTTAAT
1 GAAATGGGTTTTAAT
50330685 GAAATGGGTTTTAAT
1 GAAATGGGTTTTAAT
50330700 G
1 G
50330701 TTATTTTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (15 bp):
GAAATGGGTTTTAAT
Found at i:50337373 original size:21 final size:21
Alignment explanation
Indices: 50337347--50337387 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50337337 AGACGAGCAA
* *
50337347 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
50337368 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
50337388 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:50354262 original size:43 final size:43
Alignment explanation
Indices: 50354210--50354324 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
50354200 TGTGTTTTTT
* *
50354210 GTGTAAGACCACGTCAGGGACGTTGGCATCGACT-TGTGTTTAC
1 GTGTAAGACCACGTCAGGGACGTTGGCATAGA-TATGTGATTAC
* *
50354253 GTGTAAGACCCCGTCTGGGACAG-TGGCATAGATATGTGATTAC
1 GTGTAAGACCACGTCAGGGAC-GTTGGCATAGATATGTGATTAC
*
50354296 ATGTAAGACCACGTCTA-GGACGTTGGCAT
1 GTGTAAGACCACGTC-AGGGACGTTGGCAT
50354325 TATACGAGTT
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.03
43 58 0.95
44 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (43 bp):
GTGTAAGACCACGTCAGGGACGTTGGCATAGATATGTGATTAC
Found at i:50357208 original size:21 final size:23
Alignment explanation
Indices: 50357184--50357227 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
50357174 ATTAAATTAT
*
50357184 GAAAGGGAGAAGAA-A-GAAAAA
1 GAAAGGAAGAAGAAGATGAAAAA
50357205 GAAAGGAAGAAGAAGATGAAAAA
1 GAAAGGAAGAAGAAGATGAAAAA
50357228 AGTTCAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 13 0.65
22 1 0.05
23 6 0.30
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (23 bp):
GAAAGGAAGAAGAAGATGAAAAA
Found at i:50360206 original size:16 final size:15
Alignment explanation
Indices: 50360197--50360237 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
50360187 AAAGATAGCT
50360197 AAAGAAAAAGAAGAG
1 AAAGAAAAAGAAGAG
*
50360212 AAAGAAAAAAAAGA-
1 AAAGAAAAAGAAGAG
*
50360226 AAAGAAAGAGAA
1 AAAGAAAAAGAA
50360238 ACCCATTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAGAG
Found at i:50365043 original size:14 final size:14
Alignment explanation
Indices: 50365024--50365065 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
50365014 GTGTGAAAAT
*
50365024 ATGTATGTATATAA
1 ATGTATATATATAA
50365038 ATGTATATATATAAA
1 ATGTATATATAT-AA
*
50365053 ATG-AAATATATAA
1 ATGTATATATATAA
50365066 CAAAAAACGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 2 0.08
14 18 0.72
15 5 0.20
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (14 bp):
ATGTATATATATAA
Found at i:50365304 original size:3 final size:3
Alignment explanation
Indices: 50365296--50365326 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
50365286 ATGCGTGTAT
50365296 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
50365327 ATTAAGGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:50366987 original size:50 final size:50
Alignment explanation
Indices: 50366926--50367502 Score: 284
Period size: 50 Copynumber: 11.5 Consensus size: 50
50366916 CGGGGAAACC
* *
50366926 AGATCCGCCATTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTA
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTA
* ** * * ** * * * * ***
50366976 AGACCCACCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC-GGAGAAACC
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGA-AAGTA
* * * * *
50367026 AGATCTACTGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTA
* ** * * ** * *
50367076 AGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCGCCGTCGGGGAAACCTT
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCG-CCAGGAAA-GTA
* * *
50367128 AGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTA
* * ** * * ** **
50367178 AGATCCGCTGTTGTGACTTCAATCTTTTTAATTGC-CCTGTCGGGGAAA-CC
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCC-G-CCAGGAAAGTA
* * * * *
50367228 AGATCTGTCGTTGTGACTTCAATCTGCTCCACTGCACCGCTAGGGAAGTA
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTA
* * * ** * * * ** **
50367278 AGATCCGTCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGGAAA-CC
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCG-CCAGGAAAGTA
* *
50367328 AGATCTACCGTTGTGACTTCAATCTGCTTCACTGCACCGCCA-GAGAAGTA
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGA-AAGTA
* * * ** * * * * ** **
50367378 AGATCCGCCGTTGTGGCCTCAATCTTTTTAATTGTGCTGTCGGGGAAA-CC
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCG-CCAGGAAAGTA
* * * * * *
50367428 AGATCTACCGTTGTGATTTCAATCTGCTCCACTGCACCACCAGGGAAGTA
1 AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTA
* * *
50367478 AGATCCGCCGTTGTGGCTTTAATCT
1 AGATCTGCCGTTGTGACTTCAATCT
50367503 TTTTAATTGC
Statistics
Matches: 366, Mismatches: 147, Indels: 28
0.68 0.27 0.05
Matches are distributed among these distances:
48 2 0.01
49 18 0.05
50 284 0.78
51 27 0.07
52 35 0.10
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (50 bp):
AGATCTGCCGTTGTGACTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTA
Found at i:50366993 original size:100 final size:100
Alignment explanation
Indices: 50366842--50367512 Score: 966
Period size: 100 Copynumber: 6.7 Consensus size: 100
50366832 GCCGTCGTAG
* * * * * * * * *
50366842 CTTCAATCTGTTCAACTGCACCGCTAAGGAGGTAAAATTCGTCGTTATGGCTTCAAT-TCTTTTA
1 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCT-TTTTA
* ** *
50366906 ATTACGCTGTCGGGGAAACCAGATCCGCCATTGTGA
65 ATTGCGCTGTCGGGGAAACCAGATCTACCGTTGTGA
* * * * * *
50366942 CTTCAATCTGCTTCACTGCGCCGCCAGGAAAGTAAGACCCACCATTGTGGCTTCAATCTTTTTAA
1 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAA
* *
50367007 TTGCGCTGTCGGAGAAACCAGATCTACTGTTGTGA
66 TTGCGCTGTCGGGGAAACCAGATCTACCGTTGTGA
*
50367042 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAA
1 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAA
* *
50367107 TTGCGCCGTCGGGGAAACCTTAGATCTGCCGTTGTGA
66 TTGCGCTGTCGGGGAAACC--AGATCTACCGTTGTGA
* *
50367144 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCTGTTGTGACTTCAATCTTTTTAA
1 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAA
* **
50367209 TTGCCCTGTCGGGGAAACCAGATCTGTCGTTGTGA
66 TTGCGCTGTCGGGGAAACCAGATCTACCGTTGTGA
* *
50367244 CTTCAATCTGCTCCACTGCACCGCTAGGGAAGTAAGATCCGTCGTTGTGGCTTCAATCTTTTTAA
1 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAA
50367309 TTGCGCTGTCGGGGAAACCAGATCTACCGTTGTGA
66 TTGCGCTGTCGGGGAAACCAGATCTACCGTTGTGA
* * *
50367344 CTTCAATCTGCTTCACTGCACCGCCAGAGAAGTAAGATCCGCCGTTGTGGCCTCAATCTTTTTAA
1 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAA
*
50367409 TTGTGCTGTCGGGGAAACCAGATCTACCGTTGTGA
66 TTGCGCTGTCGGGGAAACCAGATCTACCGTTGTGA
* * *
50367444 TTTCAATCTGCTCCACTGCACCACCAGGGAAGTAAGATCCGCCGTTGTGGCTTTAATCTTTTTAA
1 CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAA
50367509 TTGC
66 TTGC
50367513 AATGTCAAAG
Statistics
Matches: 510, Mismatches: 58, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
100 416 0.82
101 1 0.00
102 93 0.18
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (100 bp):
CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAA
TTGCGCTGTCGGGGAAACCAGATCTACCGTTGTGA
Found at i:50368997 original size:15 final size:16
Alignment explanation
Indices: 50368945--50368989 Score: 76
Period size: 15 Copynumber: 2.9 Consensus size: 16
50368935 CTTTAGCCTC
50368945 TCCATTTTT-ATTTTT
1 TCCATTTTTCATTTTT
50368960 TCCATTTTTCATTTTT
1 TCCATTTTTCATTTTT
50368976 T-CATTTTTCATTTT
1 TCCATTTTTCATTTT
50368990 CATTTTTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 22 0.76
16 7 0.24
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (16 bp):
TCCATTTTTCATTTTT
Found at i:50368999 original size:8 final size:7
Alignment explanation
Indices: 50368947--50368996 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
50368937 TTAGCCTCTC
50368947 CATTTTT
1 CATTTTT
50368954 -ATTTTTT
1 CA-TTTTT
50368961 CCATTTTT
1 -CATTTTT
50368969 CATTTTTT
1 CA-TTTTT
50368977 CATTTTT
1 CATTTTT
50368984 CA-TTTT
1 CATTTTT
50368990 CATTTTT
1 CATTTTT
50368997 TCACATTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
6 7 0.18
7 18 0.47
8 12 0.32
9 1 0.03
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (7 bp):
CATTTTT
Found at i:50369018 original size:38 final size:37
Alignment explanation
Indices: 50368947--50369021 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 37
50368937 TTAGCCTCTC
* ** **
50368947 CATTTTTATTTTTTCCATTTTTCATTTTTTCATTTTT
1 CATTTTCATTTTTTCCATTTTTCACATCATCATTTTT
50368984 CATTTTCATTTTTTCACATTTTTCACATCATCATTTTT
1 CATTTTCATTTTTTC-CATTTTTCACATCATCATTTTT
50369022 TTTTTGCAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
37 14 0.44
38 18 0.56
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.65
Consensus pattern (37 bp):
CATTTTCATTTTTTCCATTTTTCACATCATCATTTTT
Found at i:50369537 original size:16 final size:16
Alignment explanation
Indices: 50369512--50369579 Score: 70
Period size: 16 Copynumber: 4.3 Consensus size: 16
50369502 TTTTTATTTC
*
50369512 TTTTTGTTTTTGTT-T
1 TTTTTCTTTTTGTTCT
50369527 TTTGTTCTTTTTGTTCT
1 TTT-TTCTTTTTGTTCT
*
50369544 TTTTTCTTTTT-TTGT
1 TTTTTCTTTTTGTTCT
*
50369559 TCTTTTCTTTTT-TCCT
1 T-TTTTCTTTTTGTTCT
50369575 TTTTT
1 TTTTT
50369580 TTTCATTGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
15 11 0.24
16 31 0.67
17 4 0.09
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.82
Consensus pattern (16 bp):
TTTTTCTTTTTGTTCT
Found at i:50369539 original size:9 final size:9
Alignment explanation
Indices: 50369525--50369564 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
50369515 TTGTTTTTGT
50369525 TTTTTGTTC
1 TTTTTGTTC
50369534 TTTTTGTTC
1 TTTTTGTTC
*
50369543 TTTTT-TCTT
1 TTTTTGT-TC
50369552 TTTTTGTTC
1 TTTTTGTTC
50369561 TTTT
1 TTTT
50369565 CTTTTTTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 1 0.04
9 25 0.93
10 1 0.04
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.82
Consensus pattern (9 bp):
TTTTTGTTC
Found at i:50369580 original size:16 final size:16
Alignment explanation
Indices: 50369503--50369580 Score: 63
Period size: 16 Copynumber: 4.9 Consensus size: 16
50369493 GTAGAGGTTT
*
50369503 TTTTATTTCTTTTTGT-
1 TTTT-TTTCTTTTTTTC
* *
50369519 TTTTGTT-TTTTGTTC
1 TTTTTTTCTTTTTTTC
50369534 TTTTTGTTC-TTTTTTC
1 TTTTT-TTCTTTTTTTC
* *
50369550 TTTTTTTGTTCTTTTC
1 TTTTTTTCTTTTTTTC
*
50369566 TTTTTTCCTTTTTTT
1 TTTTTTTCTTTTTTT
50369581 TTCATTGAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
14 5 0.10
15 8 0.17
16 35 0.73
ACGTcount: A:0.01, C:0.10, G:0.06, T:0.82
Consensus pattern (16 bp):
TTTTTTTCTTTTTTTC
Found at i:50369580 original size:27 final size:27
Alignment explanation
Indices: 50369519--50369582 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
50369509 TTCTTTTTGT
50369519 TTTTGTTTTTTGTTCTTTTTGTTCTTT-
1 TTTT-TTTTTTGTTCTTTTTGTTCTTTC
50369546 TTTCTTTTTTTGTTCTTTTCT-TT-TTTC
1 TTT-TTTTTTTGTTCTTTT-TGTTCTTTC
*
50369573 CTTTTTTTTT
1 TTTTTTTTTT
50369583 CATTGAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
26 10 0.30
27 21 0.64
28 2 0.06
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.83
Consensus pattern (27 bp):
TTTTTTTTTTGTTCTTTTTGTTCTTTC
Found at i:50377312 original size:114 final size:114
Alignment explanation
Indices: 50377180--50377898 Score: 986
Period size: 114 Copynumber: 6.4 Consensus size: 114
50377170 ACTTGTAAGT
* *
50377180 GCCGCAAAATATCGTAACCAAAACGCAACGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTT
1 GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTT
* *
50377245 ATGAAAAAACGCCGCTAAAGCACATAATTAGCGACGCCTT-TATAAAAGC
66 ATGAAAAAACGCCGCTAAAGCACATCATTAGCGACGCATTATA-AAAAGC
* *
50377294 GCCGCAAAATATCTTAACCAAAACGCAGCGCTTGGTCTTGAGGTATATTAGAATTAGTGGCACTT
1 GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTT
* *
50377359 ATGAAAAAACGGCGCTAAAGCACGA-AATTAGC-AGCGCATTATAAAAAGC
66 ATGAAAAAACGCCGCTAAAGCAC-ATCATTAGCGA-CGCATTATAAAAAGC
*
50377408 GCCG--------C---A--AAAACGCAGCGTTTGGGCTTGAGGTATATTAGAATTAGTGGCGCTT
1 GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTT
* * * *
50377460 ATGAAAAAATGCCGCTAAAGAACAGCATTAGC-AGCGCATTATAAAAAGT
66 ATGAAAAAACGCCGCTAAAGCACATCATTAGCGA-CGCATTATAAAAAGC
* *
50377509 GTCACAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTTAGAATTAGTGGCGCT
1 GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATA-TTAGAATTAGTGGCGCT
* * *
50377574 TATGAGAAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAAC
65 TATGAAAAAACGCCGCTAAAGCACATCATTAGCGACGCATTATAAAAAGC
* * *
50377624 ACCGCAAAATATCTTAACCAAAACGCAGCATTTGGTCTTGATGTATATTAGAATTAGTGGCGCTT
1 GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTT
* * *
50377689 ATGAGAAAACACCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGC
66 ATGAAAAAACGCCGCTAAAGCACATCATTAGCGACGCATTATAAAAAGC
** * * *
50377738 GCAACAAAATATCTTAACCAAAATGCAACGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCTT
1 GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTT
*
50377803 ATGAGAAAACGCCGCTAAAGCACATCATTAGCGACGCATTATAAAAAGC
66 ATGAAAAAACGCCGCTAAAGCACATCATTAGCGACGCATTATAAAAAGC
* *
50377852 ACCGCAAAATATCTTAACCAAAATGCAGCGTTTGGTCTTGAGGTATA
1 GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATA
50377899 AAGCCAATAG
Statistics
Matches: 542, Mismatches: 44, Indels: 38
0.87 0.07 0.06
Matches are distributed among these distances:
100 1 0.00
101 87 0.16
103 1 0.00
106 1 0.00
109 1 0.00
112 1 0.00
113 1 0.00
114 345 0.64
115 104 0.19
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (114 bp):
GCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTT
ATGAAAAAACGCCGCTAAAGCACATCATTAGCGACGCATTATAAAAAGC
Found at i:50381050 original size:15 final size:15
Alignment explanation
Indices: 50381015--50381066 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
50381005 TTAAGAATTT
*
50381015 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50381029 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50381043 TATTTAATAATAAT-
1 TATTTAATTATAATA
50381057 TATGTTAATT
1 TAT-TTAATT
50381067 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50381105 original size:120 final size:120
Alignment explanation
Indices: 50380957--50381542 Score: 1127
Period size: 120 Copynumber: 4.9 Consensus size: 120
50380947 AGTAAATTAT
* * *
50380957 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
*
50381022 TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
50381077 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
*
50381142 TTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
50381197 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
50381262 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
50381317 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
50381382 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
50381437 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
50381502 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
50381543 TAAATATGAT
Statistics
Matches: 460, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 460 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
Found at i:50381279 original size:18 final size:17
Alignment explanation
Indices: 50381251--50381285 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50381241 ATTATTAAGA
*
50381251 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50381268 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50381286 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50381399 original size:18 final size:17
Alignment explanation
Indices: 50381371--50381405 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50381361 ATTATTAAGA
*
50381371 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50381388 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50381406 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50381519 original size:18 final size:17
Alignment explanation
Indices: 50381491--50381525 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50381481 ATTATTAAGA
*
50381491 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50381508 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50381526 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50381755 original size:44 final size:45
Alignment explanation
Indices: 50381690--50381780 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
50381680 ACCTCTATTC
* * *
50381690 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
50381734 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
50381779 CA
1 CA
50381781 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:50381782 original size:16 final size:16
Alignment explanation
Indices: 50381761--50381829 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
50381751 GATTAGCTAT
50381761 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50381777 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
50381794 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50381810 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50381826 TACA
1 TACA
50381830 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:50381803 original size:33 final size:32
Alignment explanation
Indices: 50381761--50381829 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
50381751 GATTAGCTAT
50381761 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
50381794 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
50381826 TACA
1 TACA
50381830 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:50382365 original size:21 final size:22
Alignment explanation
Indices: 50382317--50382359 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
50382307 TGGTGGTTGT
*
50382317 TGTTTGTGGTTTACGGGTTTAA
1 TGTTTATGGTTTACGGGTTTAA
50382339 TGTTTATGGTTTA-GGGTTTAA
1 TGTTTATGGTTTACGGGTTTAA
50382360 GATTTACGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.16, C:0.02, G:0.30, T:0.51
Consensus pattern (22 bp):
TGTTTATGGTTTACGGGTTTAA
Found at i:50382370 original size:21 final size:22
Alignment explanation
Indices: 50382324--50382370 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
50382314 TGTTGTTTGT
*
50382324 GGTTTACGGGTTTAATGTTTAT
1 GGTTTACGGGTTTAATGTTTAC
50382346 GGTTTA-GGGTTTAA-GATTTAC
1 GGTTTACGGGTTTAATG-TTTAC
50382367 GGTT
1 GGTT
50382371 AATGTTTACG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.19, C:0.04, G:0.30, T:0.47
Consensus pattern (22 bp):
GGTTTACGGGTTTAATGTTTAC
Found at i:50382479 original size:21 final size:21
Alignment explanation
Indices: 50382455--50382512 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
50382445 GGGTTTAAGT
* *
50382455 TTTACGATTTAGGGTTTGGGG
1 TTTAAGATTTACGGTTTGGGG
* **
50382476 TTTAGGATTTATAGTTTGGGG
1 TTTAAGATTTACGGTTTGGGG
50382497 TTTAAGATTTACGGTT
1 TTTAAGATTTACGGTT
50382513 AAGGCTTACA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.19, C:0.03, G:0.31, T:0.47
Consensus pattern (21 bp):
TTTAAGATTTACGGTTTGGGG
Found at i:50382658 original size:15 final size:16
Alignment explanation
Indices: 50382638--50382671 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
50382628 TATTTTAGAC
*
50382638 TATAAATGTAAA-TAA
1 TATAAATATAAATTAA
50382653 TATAAATATAAATTAA
1 TATAAATATAAATTAA
50382669 TAT
1 TAT
50382672 TTAAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
TATAAATATAAATTAA
Found at i:50382907 original size:21 final size:20
Alignment explanation
Indices: 50382867--50382904 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
50382857 AATATATTGA
*
50382867 TGTATTTATTTTTTAAAATG
1 TGTAATTATTTTTTAAAATG
50382887 TGTAATTATTTTTTAAAA
1 TGTAATTATTTTTTAAAA
50382905 ATGCATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TGTAATTATTTTTTAAAATG
Found at i:50383167 original size:12 final size:12
Alignment explanation
Indices: 50383150--50383200 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
50383140 AGCCGAAAAT
*
50383150 CCCTCAGTTTTC
1 CCCTCAATTTTC
50383162 CCCTCAATTTT-
1 CCCTCAATTTTC
*
50383173 CCC-CAAATTTC
1 CCCTCAATTTTC
50383184 CCCTCTAAATTTTC
1 CCCTC--AATTTTC
50383198 CCC
1 CCC
50383201 AAAATTCCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
10 6 0.19
11 6 0.19
12 11 0.34
14 9 0.28
ACGTcount: A:0.18, C:0.43, G:0.02, T:0.37
Consensus pattern (12 bp):
CCCTCAATTTTC
Done.