Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 168 of 185
Found at i:50383199 original size:24 final size:22
Alignment explanation
Indices: 50383158--50383210 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 22
50383148 ATCCCTCAGT
50383158 TTTCCCCTCAATTTTCCCCAAA
1 TTTCCCCTCAATTTTCCCCAAA
50383180 TTTCCCCTCTAAATTTTCCCCAAA
1 TTTCCCCTC--AATTTTCCCCAAA
*
50383204 ATTCCCC
1 TTTCCCC
50383211 CAAATCTAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 9 0.32
24 19 0.68
ACGTcount: A:0.23, C:0.42, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTCCCCTCAATTTTCCCCAAA
Found at i:50384283 original size:62 final size:62
Alignment explanation
Indices: 50384211--50384435 Score: 441
Period size: 62 Copynumber: 3.6 Consensus size: 62
50384201 AAATAATTGC
50384211 TGTCAACAGACCAAAAGTTATTATTATGTATATACATAAGCATAATAATCCAATCTGCTAAG
1 TGTCAACAGACCAAAAGTTATTATTATGTATATACATAAGCATAATAATCCAATCTGCTAAG
50384273 TGTCAACAGACCAAAAGTTATTATTATGTATATACATAAGCATAATAATCCAATCTGCTAAG
1 TGTCAACAGACCAAAAGTTATTATTATGTATATACATAAGCATAATAATCCAATCTGCTAAG
50384335 TGTCAACAGACCAAAAGTTATTATTATGTATATACATAAGCATAATAATCCAATCTGCTAAG
1 TGTCAACAGACCAAAAGTTATTATTATGTATATACATAAGCATAATAATCCAATCTGCTAAG
*
50384397 TGTCAACAGACCAAAAGTTATTATTATGTATATATATAA
1 TGTCAACAGACCAAAAGTTATTATTATGTATATACATAA
50384436 CTTCATAATG
Statistics
Matches: 162, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 162 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (62 bp):
TGTCAACAGACCAAAAGTTATTATTATGTATATACATAAGCATAATAATCCAATCTGCTAAG
Found at i:50384850 original size:18 final size:18
Alignment explanation
Indices: 50384810--50384853 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
50384800 AATTTTTATG
**
50384810 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
50384828 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
50384846 CTTGGGTT
1 ATTGGGTT
50384854 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:50385171 original size:26 final size:26
Alignment explanation
Indices: 50385135--50385193 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
50385125 CTCGTTGCAT
*
50385135 AATAATTCTTACTCTATAGCTTATCA
1 AATAATTCTTACTCTATAGCTTATAA
50385161 AATAATTCTTACTCTATAGCTTATAA
1 AATAATTCTTACTCTATAGCTTATAA
50385187 AATAATT
1 AATAATT
50385194 AAATTGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (26 bp):
AATAATTCTTACTCTATAGCTTATAA
Found at i:50385971 original size:43 final size:44
Alignment explanation
Indices: 50385896--50385989 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 44
50385886 TCATGTTCTA
* *
50385896 TAGCGGCGTTGGTGGAAAAGAACGCCGCTAAAGAACATTACTTT
1 TAGCGGCGTTGGTGGAAAAGAACGCCACTAAAGAACATTACCTT
* *
50385940 TAGCGGCGTTTGT-GAAGAA-AACGCTACTAAAGAACATTACCTT
1 TAGCGGCGTTGGTGGAA-AAGAACGCCACTAAAGAACATTACCTT
50385983 TAGCGGC
1 TAGCGGC
50385990 ATTTTCGAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 31 0.69
44 14 0.31
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (44 bp):
TAGCGGCGTTGGTGGAAAAGAACGCCACTAAAGAACATTACCTT
Found at i:50395442 original size:50 final size:50
Alignment explanation
Indices: 50395318--50395566 Score: 257
Period size: 50 Copynumber: 4.8 Consensus size: 50
50395308 GATAATAACA
* * ** * *
50395318 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* * *
50395369 TGCCCATACCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * ** *
50395419 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTGTCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
50395469 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
50395524 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
50395567 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
49 1 0.01
50 88 0.54
51 32 0.20
53 2 0.01
54 1 0.01
55 1 0.01
56 39 0.24
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:50395506 original size:100 final size:104
Alignment explanation
Indices: 50395317--50395567 Score: 332
Period size: 100 Copynumber: 2.4 Consensus size: 104
50395307 TGATAATAAC
** * *
50395317 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATACCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTTGTGATGATGCCCATACCATG
* *
50395382 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * *
50395419 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTGT-CTCGATGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTGTGAT-GATGCCCATACCATG
50395482 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
50395524 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
50395568 TACCCAAATG
Statistics
Matches: 131, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 47 0.36
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 41 0.31
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTGTGATGATGCCCATACCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:50395682 original size:13 final size:13
Alignment explanation
Indices: 50395661--50395692 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
50395651 GCTTGGATCA
*
50395661 TCATCAAATAAAT
1 TCATAAAATAAAT
50395674 TCATAAAATAAAT
1 TCATAAAATAAAT
50395687 TCATAA
1 TCATAA
50395693 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:50395939 original size:30 final size:29
Alignment explanation
Indices: 50395904--50395960 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
50395894 CCTCGACTCT
*
50395904 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
50395934 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
50395961 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:50397395 original size:14 final size:15
Alignment explanation
Indices: 50397368--50397398 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
50397358 AAAGGGGAGG
50397368 AAGAAATGAAAAATA
1 AAGAAATGAAAAATA
50397383 AAGAAAT-AAAAATA
1 AAGAAATGAAAAATA
50397397 AA
1 AA
50397399 AAAAGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AAGAAATGAAAAATA
Found at i:50400749 original size:21 final size:21
Alignment explanation
Indices: 50400724--50400763 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
50400714 AAATTTAAAT
* *
50400724 AAATGTAAAACACTTTATTAA
1 AAATGAAAAACACCTTATTAA
*
50400745 AAATGAAAAATACCTTATT
1 AAATGAAAAACACCTTATT
50400764 CTTGATAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.33
Consensus pattern (21 bp):
AAATGAAAAACACCTTATTAA
Found at i:50402094 original size:19 final size:20
Alignment explanation
Indices: 50402070--50402122 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
50402060 AATTTAAGTT
*
50402070 TATTTTAAATATTATA-TTA
1 TATTTTAAATATTATACTGA
*
50402089 TATTTTTAAT-TTATACTGA
1 TATTTTAAATATTATACTGA
*
50402108 TAATTTTAAAAATTA
1 T-ATTTTAAATATTA
50402123 AACATTGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 5 0.19
19 12 0.44
20 7 0.26
21 3 0.11
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TATTTTAAATATTATACTGA
Found at i:50402760 original size:11 final size:11
Alignment explanation
Indices: 50402738--50402853 Score: 139
Period size: 11 Copynumber: 11.5 Consensus size: 11
50402728 ATTTTAAAAA
50402738 TTAAAAAGTATT
1 TTAAAAA-TATT
50402750 TTAAAAATATT
1 TTAAAAATATT
50402761 TT--AAA-A-T
1 TTAAAAATATT
50402768 TTAAAAATATT
1 TTAAAAATATT
50402779 TTAAAAATATT
1 TTAAAAATATT
50402790 TT--AAA-A-T
1 TTAAAAATATT
50402797 TTAAAAATATT
1 TTAAAAATATT
50402808 TTAAAAATATT
1 TTAAAAATATT
50402819 TT--AAA-A-T
1 TTAAAAATATT
50402826 TTAAAAATATT
1 TTAAAAATATT
50402837 TTAAAAATATT
1 TTAAAAATATT
50402848 TTAAAA
1 TTAAAA
50402854 TTAAAAAATA
Statistics
Matches: 92, Mismatches: 0, Indels: 25
0.79 0.00 0.21
Matches are distributed among these distances:
7 9 0.10
8 3 0.03
9 18 0.20
10 3 0.03
11 52 0.57
12 7 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (11 bp):
TTAAAAATATT
Found at i:50402811 original size:40 final size:40
Alignment explanation
Indices: 50402749--50402853 Score: 132
Period size: 40 Copynumber: 2.7 Consensus size: 40
50402739 TAAAAAGTAT
50402749 TTTAAAAATATTTT--AAA-A-TTTAAAAATATTTTAAAAA
1 TTTAAAAATATTTTAAAAATATTTTAAAAATATTTT-AAAA
**
50402786 TATTTTAAA-A-TTTAAAAATATTTTAAAAATATTTTAAAA
1 T-TTAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAA
50402825 TTTAAAAATATTTTAAAAATATTTTAAAA
1 TTTAAAAATATTTTAAAAATATTTTAAAA
50402854 TTAAAAAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
36 3 0.05
37 2 0.04
38 13 0.23
39 7 0.12
40 32 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (40 bp):
TTTAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAA
Found at i:50402872 original size:40 final size:39
Alignment explanation
Indices: 50402828--50402910 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 39
50402818 TTTAAAATTT
50402828 AAAAA-TATTTTAAAAATATTTTAAAATTAAAAAATAATAA
1 AAAAATTATTTT-AAAATATTTTAAAATTAAAAAAT-ATAA
* *
50402868 AAAAATTATTTTAAAATATTTTAAAATTTAAAAATTTAA
1 AAAAATTATTTTAAAATATTTTAAAATTAAAAAATATAA
50402907 AAAA
1 AAAA
50402911 TAAATATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
39 7 0.17
40 27 0.68
41 6 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (39 bp):
AAAAATTATTTTAAAATATTTTAAAATTAAAAAATATAA
Found at i:50402901 original size:29 final size:29
Alignment explanation
Indices: 50402727--50402884 Score: 253
Period size: 29 Copynumber: 5.4 Consensus size: 29
50402717 ACCAAAACTT
*
50402727 TATTTTAAAAATTAAAAAGTATTTTAAAAA
1 TATTTTAAAATTTAAAAA-TATTTTAAAAA
50402757 TATTTTAAAATTTAAAAATATTTTAAAAA
1 TATTTTAAAATTTAAAAATATTTTAAAAA
50402786 TATTTTAAAATTTAAAAATATTTTAAAAA
1 TATTTTAAAATTTAAAAATATTTTAAAAA
50402815 TATTTTAAAATTTAAAAATATTTTAAAAA
1 TATTTTAAAATTTAAAAATATTTTAAAAA
* * **
50402844 TATTTTAAAATTAAAAAATAATAAAAAAA
1 TATTTTAAAATTTAAAAATATTTTAAAAA
50402873 TTATTTTAAAAT
1 -TATTTTAAAAT
50402885 ATTTTAAAAT
Statistics
Matches: 122, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
29 94 0.77
30 28 0.23
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (29 bp):
TATTTTAAAATTTAAAAATATTTTAAAAA
Found at i:50402902 original size:18 final size:18
Alignment explanation
Indices: 50402749--50402842 Score: 109
Period size: 18 Copynumber: 5.0 Consensus size: 18
50402739 TAAAAAGTAT
50402749 TTTAAAAATATTTTAAAA
1 TTTAAAAATATTTTAAAA
50402767 TTTAAAAATATTTTAAAAATA
1 TTTAAAAATATTTT--AAA-A
* **
50402788 TTTTAAAAT-TTAAAAATA
1 TTTAAAAATATTTTAAA-A
50402806 TTTTAAAAATATTTTAAAA
1 -TTTAAAAATATTTTAAAA
50402825 TTTAAAAATATTTTAAAA
1 TTTAAAAATATTTTAAAA
50402843 ATATTTTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
18 37 0.57
19 9 0.14
20 10 0.15
21 9 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTTAAAAATATTTTAAAA
Found at i:50403379 original size:6 final size:6
Alignment explanation
Indices: 50403368--50403411 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
50403358 AATGCCCAAT
50403368 CCTAAG CCTAAG CCTAAG CCTAAG CCTAAG CCTAAG CCTAAG CC
1 CCTAAG CCTAAG CCTAAG CCTAAG CCTAAG CCTAAG CCTAAG CC
50403412 ATTTCCTCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.32, C:0.36, G:0.16, T:0.16
Consensus pattern (6 bp):
CCTAAG
Found at i:50409312 original size:17 final size:19
Alignment explanation
Indices: 50409276--50409315 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
50409266 GTAAAAAACA
*
50409276 TTTACTTCATCTTTTTTAT
1 TTTACTTCATCTTTTCTAT
50409295 TTTA-TTCAT-TTTTCTAT
1 TTTACTTCATCTTTTCTAT
50409312 TTTA
1 TTTA
50409316 ATTAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 11 0.55
18 5 0.25
19 4 0.20
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTACTTCATCTTTTCTAT
Found at i:50409888 original size:38 final size:38
Alignment explanation
Indices: 50409836--50409942 Score: 160
Period size: 38 Copynumber: 2.8 Consensus size: 38
50409826 TCTATTATTA
*
50409836 GACCCTATACTTTACATAAGTTGTGAATTTAGTAATTT
1 GACCCTATACTTTACATAAGTTGTGGATTTAGTAATTT
* *
50409874 GACCCTATATTTTACTTAAGTTGTGGATTTAGTAATTT
1 GACCCTATACTTTACATAAGTTGTGGATTTAGTAATTT
** *
50409912 GGTCCTATACTTTACGTAAGTTGTGGATTTA
1 GACCCTATACTTTACATAAGTTGTGGATTTA
50409943 ATATCTGTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (38 bp):
GACCCTATACTTTACATAAGTTGTGGATTTAGTAATTT
Found at i:50410723 original size:14 final size:16
Alignment explanation
Indices: 50410679--50410737 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
50410669 TTTAATTTTA
50410679 AAAAATT-AA-AT-AT
1 AAAAATTAAAGATAAT
*
50410692 AAAAATTGAAGATAAT
1 AAAAATTAAAGATAAT
50410708 AAAAA-TAAAG-TAAT
1 AAAAATTAAAGATAAT
*
50410722 AACTAATTAAAGATAA
1 AA-AAATTAAAGATAA
50410738 AATATTTCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 7 0.18
14 8 0.21
15 8 0.21
16 12 0.32
17 3 0.08
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.25
Consensus pattern (16 bp):
AAAAATTAAAGATAAT
Found at i:50410929 original size:58 final size:59
Alignment explanation
Indices: 50410834--50410950 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 59
50410824 TAGAGAGTAA
* *
50410834 GTGATTTTTTTTTTTTATAAAATCTTGTTTTTAATACTTAACAAATGAAATTCAAAAGG
1 GTGATTTTTTTTATTTATAAAATCCTGTTTTTAATACTTAACAAATGAAATTCAAAAGG
*
50410893 GTGA-TTTTTTTATTTATAAAATCCTGTTTTTCATACTTAACAAATGAAATTCAAAAGG
1 GTGATTTTTTTTATTTATAAAATCCTGTTTTTAATACTTAACAAATGAAATTCAAAAGG
50410951 TAATATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.45
Consensus pattern (59 bp):
GTGATTTTTTTTATTTATAAAATCCTGTTTTTAATACTTAACAAATGAAATTCAAAAGG
Found at i:50415331 original size:21 final size:21
Alignment explanation
Indices: 50415307--50415350 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
50415297 AAATTAAGTT
*
50415307 ATATGATATTTAAATAATTTA
1 ATATAATATTTAAATAATTTA
* * *
50415328 ATATAATTTTTATATATTTTA
1 ATATAATATTTAAATAATTTA
50415349 AT
1 AT
50415351 TTAAATCTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
ATATAATATTTAAATAATTTA
Found at i:50415781 original size:17 final size:18
Alignment explanation
Indices: 50415761--50415794 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50415751 TTTATTTTGA
*
50415761 ATAAAATTTA-AAAAATT
1 ATAAAATATATAAAAATT
50415778 ATAAAATATATAAAAAT
1 ATAAAATATATAAAAAT
50415795 AAATTCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAAATATATAAAAATT
Found at i:50424862 original size:16 final size:16
Alignment explanation
Indices: 50424840--50424879 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
50424830 CACTCATTTT
50424840 ATTTTTTTAAAAATTA
1 ATTTTTTTAAAAATTA
* * *
50424856 CTTTTTTTAGAATTTA
1 ATTTTTTTAAAAATTA
50424872 ATTTTTTT
1 ATTTTTTT
50424880 TTCTTGTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTTTTTTAAAAATTA
Found at i:50427963 original size:17 final size:17
Alignment explanation
Indices: 50427941--50427973 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
50427931 AAATAACTTC
*
50427941 TTTTAAAAG-TTTCAAA
1 TTTTTAAAGTTTTCAAA
50427957 TTTTTAAAGTTTTCAAA
1 TTTTTAAAGTTTTCAAA
50427974 GGAACTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
TTTTTAAAGTTTTCAAA
Found at i:50437589 original size:26 final size:26
Alignment explanation
Indices: 50437560--50437609 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
50437550 CAATAATTCA
50437560 GGGAATCAGCACTTAGCAACCCCTCG
1 GGGAATCAGCACTTAGCAACCCCTCG
* *
50437586 GGGAATCTGCACTTAGCGACCCCT
1 GGGAATCAGCACTTAGCAACCCCT
50437610 TTTTATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.18
Consensus pattern (26 bp):
GGGAATCAGCACTTAGCAACCCCTCG
Found at i:50439020 original size:44 final size:46
Alignment explanation
Indices: 50438955--50439083 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 46
50438945 ATGCACTAAT
* * *
50438955 GAACAGAGAGCACTAAAGTGCTATA-CAGAGAGCA-CAGATGTGCTA
1 GAACAGAGAGCACTAACGTGCTAAATCAGAGAGCACCA-ACGTGCTA
*
50439000 -AACAGAGAGCACTGACGTGCTAAAATCAGAGAGCACCAACGTGCTA
1 GAACAGAGAGCACTAACGTGCT-AAATCAGAGAGCACCAACGTGCTA
*
50439046 GTAGTCAGAGAGCACTAACGTGCTAATAATCAGAGAGC
1 G-A-ACAGAGAGCACTAACGTGCT-A-AATCAGAGAGC
50439084 GCGCTAAAGT
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
44 19 0.27
45 2 0.03
46 16 0.23
47 2 0.03
48 1 0.01
49 20 0.28
50 11 0.15
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.16
Consensus pattern (46 bp):
GAACAGAGAGCACTAACGTGCTAAATCAGAGAGCACCAACGTGCTA
Found at i:50439059 original size:25 final size:24
Alignment explanation
Indices: 50438958--50439083 Score: 136
Period size: 22 Copynumber: 5.3 Consensus size: 24
50438948 CACTAATGAA
*
50438958 CAGAGAGCACTAAAGTGCTAT-A-
1 CAGAGAGCACTAACGTGCTATAAT
*
50438980 CAGAGAGCAC-AGATGTGCTA-AA-
1 CAGAGAGCACTA-ACGTGCTATAAT
* *
50439002 CAGAGAGCACTGACGTGCTAAAAT
1 CAGAGAGCACTAACGTGCTATAAT
* *
50439026 CAGAGAGCACCAACGTGCTAGTAGT
1 CAGAGAGCACTAACGTGCTA-TAAT
50439051 CAGAGAGCACTAACGTGCTAATAAT
1 CAGAGAGCACTAACGTGCT-ATAAT
50439076 CAGAGAGC
1 CAGAGAGC
50439084 GCGCTAAAGT
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.01
22 35 0.40
23 2 0.02
24 18 0.20
25 31 0.35
26 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (24 bp):
CAGAGAGCACTAACGTGCTATAAT
Found at i:50439446 original size:14 final size:14
Alignment explanation
Indices: 50439429--50439457 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50439419 TAATATAAAC
50439429 ATTTAAATAAAATA
1 ATTTAAATAAAATA
50439443 ATTTAAATAAAATA
1 ATTTAAATAAAATA
50439457 A
1 A
50439458 GCTTGTAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATTTAAATAAAATA
Found at i:50440155 original size:5 final size:5
Alignment explanation
Indices: 50440137--50440176 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
50440127 TGTTTTATGT
*
50440137 ATATA ATAATA ATATA ATATT ATAATA ATATA ATATA ATA
1 ATATA AT-ATA ATATA ATATA AT-ATA ATATA ATATA ATA
50440177 ACTTACTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 22 0.71
6 9 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:50440161 original size:16 final size:16
Alignment explanation
Indices: 50440137--50440177 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
50440127 TGTTTTATGT
50440137 ATATAATAATAATATA
1 ATATAATAATAATATA
*
50440153 ATATTATAATAATATA
1 ATATAATAATAATATA
50440169 ATATAATAA
1 ATATAATAA
50440178 CTTACTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAATAATAATATA
Found at i:50440177 original size:8 final size:8
Alignment explanation
Indices: 50440142--50440171 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
50440132 TATGTATATA
50440142 ATAATAAT
1 ATAATAAT
*
50440150 ATAATATT
1 ATAATAAT
50440158 ATAATAAT
1 ATAATAAT
50440166 ATAATA
1 ATAATA
50440172 TAATAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATAAT
Found at i:50454958 original size:84 final size:84
Alignment explanation
Indices: 50454856--50455026 Score: 315
Period size: 84 Copynumber: 2.0 Consensus size: 84
50454846 ATAACCATAA
* * *
50454856 AACACGCTATATGAGCATAATATATAGTACCAGTTCCAGAAGAGAATGAGCTGGTTTAACAATTT
1 AACACACTATATGAGCATAAAATATAGTACCAGGTCCAGAAGAGAATGAGCTGGTTTAACAATTT
50454921 ATGAGTTCATTCTTCTTTT
66 ATGAGTTCATTCTTCTTTT
50454940 AACACACTATATGAGCATAAAATATAGTACCAGGTCCAGAAGAGAATGAGCTGGTTTAACAATTT
1 AACACACTATATGAGCATAAAATATAGTACCAGGTCCAGAAGAGAATGAGCTGGTTTAACAATTT
50455005 ATGAGTTCATTCTTCTTTT
66 ATGAGTTCATTCTTCTTTT
50455024 AAC
1 AAC
50455027 TTGGGGAAGC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (84 bp):
AACACACTATATGAGCATAAAATATAGTACCAGGTCCAGAAGAGAATGAGCTGGTTTAACAATTT
ATGAGTTCATTCTTCTTTT
Found at i:50455658 original size:18 final size:18
Alignment explanation
Indices: 50455637--50455671 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
50455627 TAGGAAAGGC
*
50455637 AATCAGTATAAGCAAGAT
1 AATCAATATAAGCAAGAT
50455655 AATCAATATAAGCAAGA
1 AATCAATATAAGCAAGA
50455672 GTACCTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.20
Consensus pattern (18 bp):
AATCAATATAAGCAAGAT
Found at i:50458606 original size:22 final size:20
Alignment explanation
Indices: 50458568--50458608 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
50458558 ATTAATGAGG
*
50458568 AAATTTATATTTTTATTAAA
1 AAATTTATATTTGTATTAAA
50458588 AAATTTATTTATTTGTATTAA
1 AAATTTA--TATTTGTATTAA
50458609 TCTATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
AAATTTATATTTGTATTAAA
Found at i:50462705 original size:12 final size:13
Alignment explanation
Indices: 50462678--50462710 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50462668 TCAATTTCTA
*
50462678 ATAAAATACTATG
1 ATAAAATTCTATG
50462691 ATAAAATTC-ATG
1 ATAAAATTCTATG
50462703 ATAAAATT
1 ATAAAATT
50462711 TCATCACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (13 bp):
ATAAAATTCTATG
Found at i:50468214 original size:11 final size:11
Alignment explanation
Indices: 50468195--50468228 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
50468185 TCAACATATA
50468195 ATACTAGAATT
1 ATACTAGAATT
*
50468206 ATTCTAGAATAT
1 ATACTAGAAT-T
50468218 ATACTAGAATT
1 ATACTAGAATT
50468229 TTGTCTCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (11 bp):
ATACTAGAATT
Found at i:50468226 original size:12 final size:12
Alignment explanation
Indices: 50468190--50468227 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
50468180 TTCCTTCAAC
50468190 ATATAATACTAGA
1 ATAT-ATACTAGA
*
50468203 AT-TATTCTAGA
1 ATATATACTAGA
50468214 ATATATACTAGA
1 ATATATACTAGA
50468226 AT
1 AT
50468228 TTTGTCTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 9 0.41
12 11 0.50
13 2 0.09
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (12 bp):
ATATATACTAGA
Found at i:50469916 original size:3 final size:3
Alignment explanation
Indices: 50469908--50469962 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
50469898 CTGAGGTGTT
50469908 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
50469956 TTA TTA T
1 TTA TTA T
50469963 GGATGACATA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:50474397 original size:21 final size:21
Alignment explanation
Indices: 50474373--50474413 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
50474363 CAAAATAAAT
50474373 AATCAAACAAAGTAAAACATC
1 AATCAAACAAAGTAAAACATC
** *
50474394 AATCTTACAAAGTACAACAT
1 AATCAAACAAAGTAAAACAT
50474414 ATATATAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.20
Consensus pattern (21 bp):
AATCAAACAAAGTAAAACATC
Found at i:50485832 original size:16 final size:16
Alignment explanation
Indices: 50485813--50485854 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
50485803 TACTATTATT
50485813 TTAAATTAAAAATATA
1 TTAAATTAAAAATATA
**
50485829 TTAAATTTCAAATATA
1 TTAAATTAAAAATATA
50485845 TATAAATTAA
1 T-TAAATTAA
50485855 TAAAAAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAATTAAAAATATA
Found at i:50486856 original size:12 final size:12
Alignment explanation
Indices: 50486839--50486863 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50486829 AGACCTGATA
50486839 AAATAAGAAAAC
1 AAATAAGAAAAC
50486851 AAATAAGAAAAC
1 AAATAAGAAAAC
50486863 A
1 A
50486864 TCTCCTGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (12 bp):
AAATAAGAAAAC
Found at i:50488004 original size:51 final size:51
Alignment explanation
Indices: 50487947--50488048 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
50487937 CATACACTTC
*
50487947 CCTTGTCAATATGATTGGTCATCACATTGTCCATCAAGCATACACACTCTT
1 CCTTGTCAATATGATTGGTCATCACATTGTCCACCAAGCATACACACTCTT
50487998 CCTTGTCAATATGATTGGTCATCACATTGTCCACCAAGCATACACACTCTT
1 CCTTGTCAATATGATTGGTCATCACATTGTCCACCAAGCATACACACTCTT
50488049 TCCAAAGTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.32
Consensus pattern (51 bp):
CCTTGTCAATATGATTGGTCATCACATTGTCCACCAAGCATACACACTCTT
Found at i:50494390 original size:23 final size:23
Alignment explanation
Indices: 50494340--50494384 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
50494330 GCGCTTAAGG
* *
50494340 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
50494363 TGTAATACCCCAAAAATTACTA
1 TGTAATACCCCAAAAATTACTA
50494385 TAGTAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:50495311 original size:256 final size:256
Alignment explanation
Indices: 50494843--50495324 Score: 932
Period size: 256 Copynumber: 1.9 Consensus size: 256
50494833 AATATTAGTT
50494843 TATAAATATTTTAATTTGATTTTTAAATATTATTTTTTTATTATTTTATTATTTTATTTAGTATA
1 TATAAATATTTTAATTTGATTTTTAAATATTATTTTTTTATTATTTTATTATTTTATTTAGTATA
50494908 TATATAAGAAAAGGAAGATGAAGAATCACCATCCCACCATTTTTTTCCCATGCACCAACGTGAGA
66 TATATAAGAAAAGGAAGATGAAGAATCACCATCCCACCATTTTTTTCCCATGCACCAACGTGAGA
50494973 AGAAGAGAGAAAGAAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTACCACCAAAAATTCACCA
131 AGAAGAGAGAAAGAAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTACCACCAAAAATTCACCA
50495038 TATTTACCAAGAAATCAAAAGAATTTCCATATCCATCAAGAGAGAAAGATAACAAGGAGAC
196 TATTTACCAAGAAATCAAAAGAATTTCCATATCCATCAAGAGAGAAAGATAACAAGGAGAC
50495099 TATAAATATTTTAATTTGATTTTTAAATATTATTTTTTTATTATTTTATTATTTTATTTAGTATA
1 TATAAATATTTTAATTTGATTTTTAAATATTATTTTTTTATTATTTTATTATTTTATTTAGTATA
50495164 TATATAAGAAAAGGAAGATGAAGAATCACCATCCCACCATTTTTTTCCCATGCACCAACGTGAGA
66 TATATAAGAAAAGGAAGATGAAGAATCACCATCCCACCATTTTTTTCCCATGCACCAACGTGAGA
50495229 AGAAGAGAGAAAGAAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTACCACCAAAAATTCACCA
131 AGAAGAGAGAAAGAAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTACCACCAAAAATTCACCA
50495294 T-TTTCACCTAA-AAATCAAAAGAATTTCCATA
196 TATTT-ACC-AAGAAATCAAAAGAATTTCCATA
50495325 GCTACTAAGA
Statistics
Matches: 224, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
255 3 0.01
256 219 0.98
257 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (256 bp):
TATAAATATTTTAATTTGATTTTTAAATATTATTTTTTTATTATTTTATTATTTTATTTAGTATA
TATATAAGAAAAGGAAGATGAAGAATCACCATCCCACCATTTTTTTCCCATGCACCAACGTGAGA
AGAAGAGAGAAAGAAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTACCACCAAAAATTCACCA
TATTTACCAAGAAATCAAAAGAATTTCCATATCCATCAAGAGAGAAAGATAACAAGGAGAC
Found at i:50497477 original size:3 final size:3
Alignment explanation
Indices: 50497469--50497537 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
50497459 TAATAGCTCC
50497469 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
50497517 ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
50497538 CCTATATATA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:50504712 original size:3 final size:3
Alignment explanation
Indices: 50504704--50504729 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
50504694 AAAAAATATA
50504704 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
50504730 ATATCCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:50507310 original size:13 final size:13
Alignment explanation
Indices: 50507292--50507331 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
50507282 ACTTCTTTAT
*
50507292 TGCTTTTGAGAAG
1 TGCTTTTGAGAAA
*
50507305 TGCTTTAGAGAAA
1 TGCTTTTGAGAAA
*
50507318 TACTTTTGAGAAA
1 TGCTTTTGAGAAA
50507331 T
1 T
50507332 ATGAGTGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAGAAA
Found at i:50508057 original size:19 final size:20
Alignment explanation
Indices: 50508035--50508081 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 20
50508025 AACAATCCAT
50508035 CAATA-TTATCTAAATCATA
1 CAATATTTATCTAAATCATA
50508054 CAATAACATTTATCTAAATCATA
1 CAAT---ATTTATCTAAATCATA
50508077 CAATA
1 CAATA
50508082 ACATTTAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 4 0.17
20 1 0.04
22 1 0.04
23 18 0.75
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (20 bp):
CAATATTTATCTAAATCATA
Found at i:50508070 original size:23 final size:23
Alignment explanation
Indices: 50508040--50508088 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
50508030 TCCATCAATA
50508040 TTATCTAAATCATACAATAACAT
1 TTATCTAAATCATACAATAACAT
50508063 TTATCTAAATCATACAATAACAT
1 TTATCTAAATCATACAATAACAT
50508086 TTA
1 TTA
50508089 AGGAGTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (23 bp):
TTATCTAAATCATACAATAACAT
Found at i:50509427 original size:20 final size:20
Alignment explanation
Indices: 50509402--50509441 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50509392 CGTAAAATTA
*
50509402 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
*
50509422 TTTCTGTAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
50509442 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:50509431 original size:34 final size:35
Alignment explanation
Indices: 50509387--50509453 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
50509377 CAGTAAAATA
* *
50509387 TTTTCCGTAAAATTATTT-CTGAAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
* *
50509421 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
50509454 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:50516326 original size:33 final size:33
Alignment explanation
Indices: 50516289--50516644 Score: 192
Period size: 33 Copynumber: 10.5 Consensus size: 33
50516279 ATAGGTGGAT
* *
50516289 TCAGCACTTAGCAACCACCAGTGATTCGGGGAG
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
*
50516322 TCAGCACTTAGCAACCCCTTTCACATTCAAAGATAT-GGTGGAA
1 TCAGCACTTAGCAA---C---CAC---CAATGAT-TCGG-GGAA
50516365 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
*
50516398 TCAGCACTTAGCAACCA-C-----TTGGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
* * * *
50516425 TCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGTGGAA
1 TCAGCACTTAGCAA-CCAC--CA-A--T--GATTC-GGGGAA
*
50516467 TCAGCACTTAGCAACCAACAATGATTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
*
50516500 TCAGCACTTAGCAACC-CC-----TTGGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
* * *
50516527 TCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAA
1 TCAGCACTTAGCAA-CCAC--CA-A--T--GATTCGG-GGAA
50516569 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
*
50516602 TCAGCACTTAGCAACC-CC-----TTGGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
50516629 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
50516645 CCCTTTATAT
Statistics
Matches: 259, Mismatches: 22, Indels: 90
0.70 0.06 0.24
Matches are distributed among these distances:
27 68 0.26
28 4 0.02
29 1 0.00
31 2 0.01
32 4 0.02
33 77 0.30
34 16 0.06
36 3 0.01
37 3 0.01
38 2 0.01
39 7 0.03
40 1 0.00
41 9 0.03
42 44 0.17
43 18 0.07
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.21
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGATTCGGGGAA
Found at i:50516492 original size:102 final size:102
Alignment explanation
Indices: 50516316--50516649 Score: 596
Period size: 102 Copynumber: 3.3 Consensus size: 102
50516306 CCAGTGATTC
* * * *
50516316 GGGGAGTCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAA-ATACGGTGGAATCAGCACTTAGCAACC
*
50516381 ACCAATGATTCGGGGAATCAGCACTTAGCAACCACTTG
65 ACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
*
50516419 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
*
50516484 ACAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
50516521 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
50516586 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
50516623 GGGGAATCAGCACTTAGCAACCCCCTT
1 GGGGAATCAGCACTTAGCAACCCCCTT
50516650 TATATTCAAT
Statistics
Matches: 222, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
102 188 0.85
103 34 0.15
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:50518580 original size:22 final size:22
Alignment explanation
Indices: 50518555--50518597 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
50518545 AAAGAAACTC
* * *
50518555 ACCAGCGGAAGAGGAACAAAGA
1 ACCAGAGGAAAAGAAACAAAGA
50518577 ACCAGAGGAAAAGAAACAAAG
1 ACCAGAGGAAAAGAAACAAAG
50518598 GCTAAGAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.28, T:0.00
Consensus pattern (22 bp):
ACCAGAGGAAAAGAAACAAAGA
Found at i:50521277 original size:16 final size:16
Alignment explanation
Indices: 50521256--50521323 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
50521246 TTTGGTTCGC
50521256 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* **
50521272 TGTATTGGATTAAATA
1 TGTATTGGATTAGAGG
50521288 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
50521304 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
50521320 TGTA
1 TGTA
50521324 ATAGCAAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:50521580 original size:18 final size:17
Alignment explanation
Indices: 50521559--50521593 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50521549 TTATTATTAA
*
50521559 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
50521577 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
50521594 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:50521700 original size:18 final size:17
Alignment explanation
Indices: 50521679--50521713 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50521669 TTATTATTAA
*
50521679 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
50521697 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
50521714 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:50521755 original size:120 final size:120
Alignment explanation
Indices: 50521542--50522644 Score: 2125
Period size: 120 Copynumber: 9.2 Consensus size: 120
50521532 ATCATATTTA
*
50521542 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
50521607 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
50521662 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
50521727 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
50521782 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
50521847 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
50521902 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
50521967 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
50522022 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
50522087 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
50522142 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
50522207 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
50522262 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
50522327 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
50522382 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
50522447 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
50522502 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
50522567 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
50522622 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
50522645 AACTTGAAAA
Statistics
Matches: 978, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 978 1.00
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:50521940 original size:18 final size:17
Alignment explanation
Indices: 50521919--50521953 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50521909 TTATTATTAA
*
50521919 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
50521937 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
50521954 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:50527572 original size:21 final size:21
Alignment explanation
Indices: 50527529--50527584 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
50527519 AAGCAGATGG
*
50527529 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAA-CAATTATAT
*
50527551 AGCCACTGCAAACAATTGTAT
1 AGCCACTGCAAACAATTATAT
50527572 AGCCACTGCAAAC
1 AGCCACTGCAAAC
50527585 GGGGGAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.21
Consensus pattern (21 bp):
AGCCACTGCAAACAATTATAT
Found at i:50528694 original size:33 final size:33
Alignment explanation
Indices: 50528652--50528787 Score: 167
Period size: 33 Copynumber: 4.3 Consensus size: 33
50528642 AAAAATGGCA
*
50528652 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
**
50528685 AGAGAAACAAAA-A----ACCA-CTACAGAAAAT
1 AGAGAAACAAAACATGGTA-CAGAAACAGAAAAT
*
50528713 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
* *
50528746 AAAGAAACAAAACACGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
50528779 AGAGAAACA
1 AGAGAAACA
50528788 TAAAGCAGAC
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
28 21 0.24
29 3 0.03
32 3 0.03
33 59 0.69
ACGTcount: A:0.61, C:0.14, G:0.18, T:0.07
Consensus pattern (33 bp):
AGAGAAACAAAACATGGTACAGAAACAGAAAAT
Found at i:50528771 original size:18 final size:17
Alignment explanation
Indices: 50528718--50528772 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
50528708 AAAATAGAGG
50528718 AACAAAACATGGTACAGA
1 AACAAAACA-GGTACAGA
*
50528736 AACAGAAA-A--TAAAGA
1 AACA-AAACAGGTACAGA
50528751 AACAAAACACGGTACAGA
1 AACAAAACA-GGTACAGA
50528769 AACA
1 AACA
50528773 GAAAATAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.10
15 10 0.33
18 14 0.47
19 3 0.10
ACGTcount: A:0.62, C:0.16, G:0.15, T:0.07
Consensus pattern (17 bp):
AACAAAACAGGTACAGA
Found at i:50542455 original size:27 final size:27
Alignment explanation
Indices: 50542391--50542459 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
50542381 AATGGAGGGT
* *
50542391 CTGCCACAGGCGGCACCAATGGTTCCT
1 CTGCCACAGGCGGCACCAATGGTGCCA
* * *
50542418 TTGGCAGAGGCGGCACCAATGGTGCCA
1 CTGCCACAGGCGGCACCAATGGTGCCA
50542445 CTGCCACAGGCGGCA
1 CTGCCACAGGCGGCA
50542460 TCCCCTTTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.20, C:0.33, G:0.32, T:0.14
Consensus pattern (27 bp):
CTGCCACAGGCGGCACCAATGGTGCCA
Found at i:50543721 original size:19 final size:19
Alignment explanation
Indices: 50543697--50543746 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
50543687 GGAAAAAAAG
50543697 ACGAACAAAGGGCTGAAAT
1 ACGAACAAAGGGCTGAAAT
50543716 ACGAACAAAGGGCTGAAAT
1 ACGAACAAAGGGCTGAAAT
50543735 ACGAACAAAGGG
1 ACGAACAAAGGG
50543747 GGGTGCCGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (19 bp):
ACGAACAAAGGGCTGAAAT
Found at i:50543796 original size:27 final size:27
Alignment explanation
Indices: 50543748--50543814 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
50543738 AACAAAGGGG
* **
50543748 GGTGCCGCCTGTGGCAGTGGCACCATT
1 GGTGCCGCCTGTGCCACAGGCACCATT
*
50543775 GGTGCCGCCTTTGCCACAGGCACCATT
1 GGTGCCGCCTGTGCCACAGGCACCATT
*
50543802 GGTGCTGCCTGTG
1 GGTGCCGCCTGTG
50543815 GCAGGCCCTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.10, C:0.31, G:0.34, T:0.24
Consensus pattern (27 bp):
GGTGCCGCCTGTGCCACAGGCACCATT
Found at i:50548896 original size:23 final size:23
Alignment explanation
Indices: 50548870--50548914 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
50548860 ATAAGTGCAA
50548870 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
50548893 CACTGTTATGTAGCCGAAGCTA
1 CACTGATATGTAGCCGAAGCTA
50548915 AACGACTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:50574989 original size:25 final size:25
Alignment explanation
Indices: 50574958--50575009 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
50574948 TACATATATC
* *
50574958 TTGATTTTATTTGATTCCAATGAAT
1 TTGATTTGATTTGATTCAAATGAAT
* *
50574983 TTGATTTGATTTTATTCAAATTAAT
1 TTGATTTGATTTGATTCAAATGAAT
50575008 TT
1 TT
50575010 TAAATGCTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.56
Consensus pattern (25 bp):
TTGATTTGATTTGATTCAAATGAAT
Found at i:50575453 original size:6 final size:6
Alignment explanation
Indices: 50575437--50575511 Score: 102
Period size: 6 Copynumber: 13.0 Consensus size: 6
50575427 TTAAATATAA
* **
50575437 ATATTT AT-TTT ATTTTT ATATAA ATA-TT -TATTT ATATTT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT
50575482 ATATTT ATATTT ATATTT ATATTT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATATTT
50575512 GTTCGCTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
4 2 0.03
5 7 0.11
6 52 0.85
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
ATATTT
Found at i:50575740 original size:85 final size:83
Alignment explanation
Indices: 50575640--50575886 Score: 257
Period size: 84 Copynumber: 2.9 Consensus size: 83
50575630 GAGAATAAAA
* * * * *
50575640 AATTAAAATTGAATAAAATTTGTTTCAGGATTTATTCCCGTCGTTTAATATATTTTATTCTATTT
1 AATTAAAATTAAATAAAATTTATTT-AGGATTTATTCCCGACGTTTAACAGATTTTATTCTATTT
50575705 TGATTTTGTTTCCAATTCAG
65 TGATTTTGTTTCCAA-TCAG
* ** * *
50575725 AATTAAAATTAAAT--AATTCTATTTGGGAATTTATTCATGACGCTTAACAGATTTTATTCCATT
1 AATTAAAATTAAATAAAATT-TATTTAGG-ATTTATTCCCGACGTTTAACAGATTTTATTCTATT
* *
50575788 TTGATTTTGTTTTCGAATGAG
64 TTGATTTTG-TTTCCAATCAG
* * * *
50575809 AATTAAAAATTAAATAAAATTTATTTTGAAATTTATTCCCGCCATTTAACAGATTTTATT-TGAT
1 AATT-AAAATTAAATAAAATTTATTTAG-GATTTATTCCCGACGTTTAACAGATTTTATTCT-AT
50575873 TTTGATTTTGTTTC
63 TTTGATTTTGTTTC
50575887 TCATTTGAAA
Statistics
Matches: 134, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
83 6 0.04
84 48 0.36
85 33 0.25
86 43 0.32
87 4 0.03
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.48
Consensus pattern (83 bp):
AATTAAAATTAAATAAAATTTATTTAGGATTTATTCCCGACGTTTAACAGATTTTATTCTATTTT
GATTTTGTTTCCAATCAG
Found at i:50575867 original size:86 final size:85
Alignment explanation
Indices: 50575669--50575885 Score: 251
Period size: 86 Copynumber: 2.6 Consensus size: 85
50575659 TTGTTTCAGG
* * * *
50575669 ATTTATTCCCGTCGTTTAATATATTTTATTCTATTTTGATTTTG-TTTCCAATTCAGAATTAAAA
1 ATTTATTCCCGACGTTTAACAGATTTTATTCCATTTTGATTTTGTTTTCCAATTCAGAATTAAAA
*
50575733 TTAAATAATTCTATTTGGGA
66 TTAAATAATTCTATTTGGAA
** * * *
50575753 ATTTATTCATGACGCTTAACAGATTTTATTCCATTTTGATTTTGTTTTCGAA-TGAGAATTAAAA
1 ATTTATTCCCGACGTTTAACAGATTTTATTCCATTTTGATTTTGTTTTCCAATTCAGAATT-AAA
*
50575817 ATTAAATAAAATT-TATTTTGAA
65 ATTAAAT--AATTCTATTTGGAA
* * **
50575839 ATTTATTCCCGCCATTTAACAGATTTTATTTGATTTTGATTTTGTTT
1 ATTTATTCCCGACGTTTAACAGATTTTATTCCATTTTGATTTTGTTT
50575886 CTCATTTGAA
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
84 44 0.40
85 16 0.14
86 47 0.42
87 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.49
Consensus pattern (85 bp):
ATTTATTCCCGACGTTTAACAGATTTTATTCCATTTTGATTTTGTTTTCCAATTCAGAATTAAAA
TTAAATAATTCTATTTGGAA
Found at i:50576048 original size:85 final size:84
Alignment explanation
Indices: 50575905--50576078 Score: 215
Period size: 85 Copynumber: 2.0 Consensus size: 84
50575895 AAAAAGTAAA
* * * *
50575905 AATTCTCGTTTAAAAACAAAATCAAAATGGAATAAAATCGGTTAAACAACGAAAATAAATTCCTA
1 AATTCTCGTTTAAAAACAAAATCAAAAAGGAAAAAAATCGATTAAAC-ACGAAAATAAATTCCAA
* *
50575970 AATAGATTTTATTTAATTTT
65 AACAGATTTTATTCAATTTT
** * * *
50575990 AATTCTCGTTTGGAAACAAAATCAAAAAGGAAAAAAATCTATTAAAC-GGTATGAATAAATTCCA
1 AATTCTCGTTTAAAAACAAAATCAAAAAGGAAAAAAATCGATTAAACACG-A-AAATAAATTCCA
50576054 AAACAGATTTTATTCAATTTT
64 AAACAGATTTTATTCAATTTT
50576075 AATT
1 AATT
50576079 TTTTATTCTC
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
83 1 0.01
84 1 0.01
85 74 0.97
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.32
Consensus pattern (84 bp):
AATTCTCGTTTAAAAACAAAATCAAAAAGGAAAAAAATCGATTAAACACGAAAATAAATTCCAAA
ACAGATTTTATTCAATTTT
Found at i:50578095 original size:11 final size:11
Alignment explanation
Indices: 50578079--50578119 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
50578069 TATTTTCTCC
50578079 CTATTTTACTA
1 CTATTTTACTA
*
50578090 CCATTTTACTA
1 CTATTTTACTA
* *
50578101 TTATATTACTA
1 CTATTTTACTA
50578112 CTATTTTA
1 CTATTTTA
50578120 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:50578852 original size:19 final size:18
Alignment explanation
Indices: 50578828--50578868 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
50578818 TTGGTATGGA
50578828 TATTGTATAACATTTGTT-T
1 TATTGT-TAA-ATTTGTTAT
50578847 TATTGTTAAATTTGTTAT
1 TATTGTTAAATTTGTTAT
50578865 TATT
1 TATT
50578869 TTAGAGGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.33
18 8 0.38
19 6 0.29
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (18 bp):
TATTGTTAAATTTGTTAT
Found at i:50585374 original size:24 final size:24
Alignment explanation
Indices: 50585345--50585390 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
50585335 AAAATGATTG
50585345 TTTAAAATATAAATATTTTACTCA
1 TTTAAAATATAAATATTTTACTCA
50585369 TTTAAAATATAAATATTTTACT
1 TTTAAAATATAAATATTTTACT
50585391 AACAATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTAAAATATAAATATTTTACTCA
Found at i:50587162 original size:3 final size:3
Alignment explanation
Indices: 50587154--50587192 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
50587144 TGCATTTACT
50587154 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
50587193 ACTTCCTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:50590838 original size:33 final size:34
Alignment explanation
Indices: 50590796--50590863 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
50590786 ACTCGGAATC
*
50590796 ATTGAAAAATT-GCAAAATAAATAAATTCTCTCA
1 ATTGAAAAATTAGAAAAATAAATAAATTCTCTCA
*
50590829 ATTGAAAAATTATAAAAATAAATAAATTCTCTCA
1 ATTGAAAAATTAGAAAAATAAATAAATTCTCTCA
50590863 A
1 A
50590864 ATAATATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 11 0.34
34 21 0.66
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.31
Consensus pattern (34 bp):
ATTGAAAAATTAGAAAAATAAATAAATTCTCTCA
Found at i:50590918 original size:17 final size:17
Alignment explanation
Indices: 50590898--50590951 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
50590888 GACAAGAGTA
50590898 AAAATAAAGATAATTTC
1 AAAATAAAGATAATTTC
50590915 AAAAT-AA-AT--TTT-
1 AAAATAAAGATAATTTC
*
50590927 AAAACAAAGATAATTTC
1 AAAATAAAGATAATTTC
*
50590944 AAGATAAA
1 AAAATAAA
50590952 TTTTAAAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 10
0.69 0.07 0.24
Matches are distributed among these distances:
12 4 0.14
13 5 0.17
14 2 0.07
15 2 0.07
16 5 0.17
17 11 0.38
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (17 bp):
AAAATAAAGATAATTTC
Found at i:50590935 original size:29 final size:29
Alignment explanation
Indices: 50590898--50590958 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
50590888 GACAAGAGTA
*
50590898 AAAATAAAGATAATTTCAAAATAAATTTT
1 AAAACAAAGATAATTTCAAAATAAATTTT
*
50590927 AAAACAAAGATAATTTCAAGATAAATTTT
1 AAAACAAAGATAATTTCAAAATAAATTTT
50590956 AAA
1 AAA
50590959 GAATACTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (29 bp):
AAAACAAAGATAATTTCAAAATAAATTTT
Found at i:50596321 original size:30 final size:32
Alignment explanation
Indices: 50596263--50596332 Score: 99
Period size: 30 Copynumber: 2.2 Consensus size: 32
50596253 TACTAACTAA
50596263 ATTTAAAAAAATTATAAAATGATAATTAAATT
1 ATTTAAAAAAATTATAAAATGATAATTAAATT
** *
50596295 ATTTAAAAAAATTATTTAA-G-TTATTAAATT
1 ATTTAAAAAAATTATAAAATGATAATTAAATT
50596325 ATTTAAAA
1 ATTTAAAA
50596333 TTTTTTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 17 0.49
31 1 0.03
32 17 0.49
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (32 bp):
ATTTAAAAAAATTATAAAATGATAATTAAATT
Found at i:50596344 original size:31 final size:31
Alignment explanation
Indices: 50596287--50596369 Score: 98
Period size: 30 Copynumber: 2.7 Consensus size: 31
50596277 TAAAATGATA
*** *
50596287 ATTAAATTATTTAAAA-AAATTATTTAAGTT
1 ATTAAATTATTTAAAATTTTTTATTTAAGTC
50596317 ATTAAATTATTTAAAATTTTTTATTTAAGTC
1 ATTAAATTATTTAAAATTTTTTATTTAAGTC
* *
50596348 ATTAAACT-TTTAAATTTTTTTA
1 ATTAAATTATTTAAAATTTTTTA
50596370 AAAAAATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 29 0.63
31 17 0.37
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (31 bp):
ATTAAATTATTTAAAATTTTTTATTTAAGTC
Found at i:50596360 original size:30 final size:31
Alignment explanation
Indices: 50596306--50596369 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
50596296 TTTAAAAAAA
* *
50596306 TTATTTAAGTTATTAAATTATTTAAAATTTT
1 TTATTTAAGTCATTAAACTATTTAAAATTTT
*
50596337 TTATTTAAGTCATTAAACT-TTTAAATTTTT
1 TTATTTAAGTCATTAAACTATTTAAAATTTT
50596367 TTA
1 TTA
50596370 AAAAAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (31 bp):
TTATTTAAGTCATTAAACTATTTAAAATTTT
Found at i:50603964 original size:30 final size:31
Alignment explanation
Indices: 50603913--50603974 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
50603903 ACTTACCAGC
50603913 TTAATAACTTAAAAGAATATTTTTAAACAAT
1 TTAATAACTTAAAAGAATATTTTTAAACAAT
* * *
50603944 TTAATAA-TTTAAATAATATTTTTAAATAAT
1 TTAATAACTTAAAAGAATATTTTTAAACAAT
50603974 T
1 T
50603975 AAGTCACTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (31 bp):
TTAATAACTTAAAAGAATATTTTTAAACAAT
Found at i:50613277 original size:24 final size:25
Alignment explanation
Indices: 50613230--50613277 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
50613220 TTGTCAATTT
**
50613230 AATATCAATTCTAAAAATTCAAAAA
1 AATATCAATTCTAAAAATAAAAAAA
*
50613255 AATA-CAATTTTAAAAATAAAAAA
1 AATATCAATTCTAAAAATAAAAAA
50613278 TACTATAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (25 bp):
AATATCAATTCTAAAAATAAAAAAA
Found at i:50617964 original size:11 final size:11
Alignment explanation
Indices: 50617948--50617980 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
50617938 CTGCTTTAGG
50617948 TAGTGCGTGCC
1 TAGTGCGTGCC
50617959 TAGTGCGTGCC
1 TAGTGCGTGCC
*
50617970 TAGTGCTTGCC
1 TAGTGCGTGCC
50617981 CACAGCAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.27, G:0.33, T:0.30
Consensus pattern (11 bp):
TAGTGCGTGCC
Found at i:50621130 original size:21 final size:21
Alignment explanation
Indices: 50621106--50621147 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
50621096 GTGAAGAAAA
*
50621106 GATTCTGACCTGAAAATAAGG
1 GATTCTGACCTCAAAATAAGG
50621127 GATTCTGACCTCAAAATAAGG
1 GATTCTGACCTCAAAATAAGG
50621148 ACAGCAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (21 bp):
GATTCTGACCTCAAAATAAGG
Found at i:50621923 original size:37 final size:37
Alignment explanation
Indices: 50621862--50622008 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
50621852 TACGTATGAT
* *
50621862 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
50621897 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
50621934 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
50621971 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
50622008 C
1 C
50622009 GAAGCTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:50622050 original size:52 final size:52
Alignment explanation
Indices: 50621971--50622187 Score: 293
Period size: 52 Copynumber: 4.2 Consensus size: 52
50621961 TAAGTGTAGC
* *
50621971 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
50622024 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
50622076 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * ** *
50622122 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
50622174 CACTTTGTCACTTG
1 CACTTT-TCACTTG
50622188 ATCAGAAGTA
Statistics
Matches: 145, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.30
49 1 0.01
52 86 0.59
53 15 0.10
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:50622102 original size:98 final size:98
Alignment explanation
Indices: 50621970--50622193 Score: 394
Period size: 98 Copynumber: 2.3 Consensus size: 98
50621960 ATAAGTGTAG
* *
50621970 CCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACT
*
50622035 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
* *
50622068 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACT
*
50622133 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
50622166 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
50622194 AGTACTCAAA
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 119 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACT
TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
Found at i:50628204 original size:79 final size:81
Alignment explanation
Indices: 50628069--50628252 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
50628059 TGAATGATGT
* *
50628069 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
50628133 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
50628149 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
50628211 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
50628228 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50628253 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATAA
Found at i:50628259 original size:40 final size:40
Alignment explanation
Indices: 50628068--50628252 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
50628058 TTGAATGATG
* * * *
50628068 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50628108 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50628148 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50628187 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50628228 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50628253 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50628274 original size:79 final size:79
Alignment explanation
Indices: 50628121--50628285 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
50628111 GGACTAAGAT
* ** **
50628121 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
50628186 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50628200 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
50628263 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50628279 CCGAAGG
1 CCGAAGG
50628286 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50636110 original size:22 final size:22
Alignment explanation
Indices: 50636082--50636126 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
50636072 AATGGATGAA
50636082 TGAATAAATGACAAATGAATGT
1 TGAATAAATGACAAATGAATGT
*
50636104 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATGAATGT
50636126 T
1 T
50636127 AGACATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.04, G:0.20, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATGT
Found at i:50639457 original size:50 final size:50
Alignment explanation
Indices: 50639374--50639472 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 50
50639364 CGCACGAGGA
* *
50639374 AGGTATTAGCACCCTCGCGACACTCAAACTTGGTATCTCGTTAAACATGC
1 AGGTATTAGCACCCTCGCGACACCCAAAATTGGTATCTCGTTAAACATGC
* *
50639424 AGGTATTAGCACCCTCGTGACGCCCAAAATTGGTATCTCGTTAAACATG
1 AGGTATTAGCACCCTCGCGACACCCAAAATTGGTATCTCGTTAAACATG
50639473 TGTTGTCTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
AGGTATTAGCACCCTCGCGACACCCAAAATTGGTATCTCGTTAAACATGC
Found at i:50639755 original size:6 final size:6
Alignment explanation
Indices: 50639744--50639768 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
50639734 NNNNNNNNCC
50639744 CAGCCT CAGCCT CAGCCT CAGCCT C
1 CAGCCT CAGCCT CAGCCT CAGCCT C
50639769 GGAGACCCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.52, G:0.16, T:0.16
Consensus pattern (6 bp):
CAGCCT
Found at i:50641938 original size:16 final size:16
Alignment explanation
Indices: 50641917--50641949 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50641907 AAGGAATGTG
50641917 TCTAATGACGTCTGCT
1 TCTAATGACGTCTGCT
*
50641933 TCTAATGATGTCTGCT
1 TCTAATGACGTCTGCT
50641949 T
1 T
50641950 GTTTCAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.42
Consensus pattern (16 bp):
TCTAATGACGTCTGCT
Found at i:50642679 original size:18 final size:18
Alignment explanation
Indices: 50642656--50642695 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
50642646 TTCAGGTAAC
*
50642656 TCTTGCTTATATTGATTG
1 TCTTGCTTATACTGATTG
50642674 TCTTGCTTATACTGATTG
1 TCTTGCTTATACTGATTG
50642692 TCTT
1 TCTT
50642696 TCCTAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (18 bp):
TCTTGCTTATACTGATTG
Found at i:50657698 original size:46 final size:46
Alignment explanation
Indices: 50657680--50657836 Score: 149
Period size: 46 Copynumber: 3.3 Consensus size: 46
50657670 TGACAAGTGG
* * *
50657680 AAAGTGATAAGTAATAGCT-TCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
*
50657726 AAAGTGATAAGTGATAGCT-TCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* * *
50657772 AAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
50657824 AAAGTGATAAGTG
1 AAAGTGATAAGTG
50657837 GCTACACTTA
Statistics
Matches: 101, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
46 57 0.56
52 44 0.44
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
Found at i:50657699 original size:52 final size:51
Alignment explanation
Indices: 50657628--50657836 Score: 284
Period size: 52 Copynumber: 4.1 Consensus size: 51
50657618 ATCAAGTGAC
* **
50657628 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
* *
50657680 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
50657726 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
* *
50657777 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTG
1 -AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-AAGTG
50657830 ATAAGTG
1 A-AAGTG
50657837 GCTACACTTA
Statistics
Matches: 140, Mismatches: 9, Indels: 15
0.85 0.05 0.09
Matches are distributed among these distances:
46 44 0.31
52 86 0.61
53 10 0.07
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:50657734 original size:98 final size:98
Alignment explanation
Indices: 50657614--50657837 Score: 394
Period size: 98 Copynumber: 2.3 Consensus size: 98
50657604 TTTGAGTACT
*
50657614 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
50657679 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
50657712 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
50657777 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
50657810 TCTGATCAAGAGACAAAGTGATAAGTGG
1 TCTGATCAAGTGACAAAGTGATAAGTGG
50657838 CTACACTTAT
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 119 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:50657846 original size:37 final size:37
Alignment explanation
Indices: 50657799--50657945 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
50657789 TGATAGCTTC
* *
50657799 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
50657836 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
50657873 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
**
50657910 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
50657945 G
1 G
50657946 ATCATACGTA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
Found at i:50659275 original size:58 final size:58
Alignment explanation
Indices: 50659198--50659365 Score: 228
Period size: 58 Copynumber: 3.0 Consensus size: 58
50659188 CATGTGAACA
50659198 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
*
50659257 TGTGATATGTGATTCCGTGTAGGACCATAGCTGGGCTATGGCATCGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
50659313 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
50659364 TG
1 TG
50659366 ATTACGTGTA
Statistics
Matches: 102, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
49 37 0.36
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 50 0.49
59 5 0.05
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.33
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:50659332 original size:49 final size:49
Alignment explanation
Indices: 50659258--50659400 Score: 207
Period size: 49 Copynumber: 2.9 Consensus size: 49
50659248 AGTGATATGT
* *
50659258 GTGATATGTGATTCCGTGTAGGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
50659307 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
50659356 GTGATTTGTGATTACGTGTAAGACCATA-CTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGC-TGGGCTATGGCATCG
50659401 AGAAAACGAA
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
49 85 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:50667398 original size:50 final size:50
Alignment explanation
Indices: 50667274--50667473 Score: 208
Period size: 50 Copynumber: 4.0 Consensus size: 50
50667264 TATATGTAGC
* * * *
50667274 TAGGTCGCATGTGTAGTACTAATTGCAGGCTACTATGCGTACCCA-ATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGAT-AGT
* * * * * *
50667325 TCGATCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
* * * *
50667375 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
** *
50667425 T-GGTGGCATGTGTAGTACTAAGTGCAGGCTAC-ATGCGTACCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
50667473 T
1 T
50667474 TGGCTACATA
Statistics
Matches: 125, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
48 13 0.10
49 28 0.22
50 49 0.39
51 35 0.28
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
Found at i:50669761 original size:80 final size:81
Alignment explanation
Indices: 50669553--50669812 Score: 307
Period size: 81 Copynumber: 3.2 Consensus size: 81
50669543 TTACACTATA
* * * * *
50669553 AGGGTATTTCAGTAATTTTATACAA-CAAGGGTATTTCGATAATTTTACAAA-TCGAGGGTATTT
1 AGGGTATTTCGGTAATTTTACA-AATCGAGGGTGTTTCGATAATTTTACAAACT-GAGGGTACTT
*
50669616 CGGTAATTTTAAAAATCG
64 CGGTAATTTTACAAATCG
* * * * *
50669634 AAGGTGTTTTGGTGATTTTACAAATCGAGGGTGTTTCCG-TAATTTTACAAACTGATGGTACTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTT-CGATAATTTTACAAACTGAGGGTACTTC
50669698 GGTAATTTTACAAATCG
65 GGTAATTTTACAAATCG
*
50669715 AGGGTA-TTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAACCG-GGAGTACTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAACTGAGG-GTACTTC
* *
50669778 GATAATTTTACAAATTG
65 GGTAATTTTACAAATCG
50669795 -GGGTTATTTCGGTAATTT
1 AGGG-TATTTCGGTAATTT
50669813 CTCTTTATTA
Statistics
Matches: 153, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
79 6 0.04
80 67 0.44
81 77 0.50
82 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAACTGAGGGTACTTCG
GTAATTTTACAAATCG
Found at i:50669763 original size:27 final size:27
Alignment explanation
Indices: 50669553--50669812 Score: 278
Period size: 27 Copynumber: 9.7 Consensus size: 27
50669543 TTACACTATA
* * *
50669553 AGGGTATTTCAGTAATTTTATACAA-CA
1 AGGGTATTTCGGTAATTTTACA-AATCG
*
50669580 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
50669607 AGGGTATTTCGGTAATTTTAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
50669634 AAGGTGTTTTGGTGATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
50669661 AGGGTGTTTCCGTAATTTTACAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
* *
50669688 ATGGTACTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
50669715 AGGGTA-TTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
50669741 AGGGTGTTTCGATAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
50669768 -GGAGTACTTCGATAATTTTACAAATTG
1 AGG-GTATTTCGGTAATTTTACAAATCG
50669795 -GGGTTATTTCGGTAATTT
1 AGGG-TATTTCGGTAATTT
50669813 CTCTTTATTA
Statistics
Matches: 198, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
26 31 0.16
27 166 0.84
28 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:50670164 original size:28 final size:28
Alignment explanation
Indices: 50670128--50670191 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
50670118 TGGCCCGTTT
*
50670128 AGGCCCAATCTCATTCACATAGCCCATC
1 AGGCCCAATCACATTCACATAGCCCATC
* *
50670156 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATAGCCCATC
50670184 AGGCCCAA
1 AGGCCCAA
50670192 CTACTTCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.30, C:0.38, G:0.14, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATAGCCCATC
Found at i:50677254 original size:103 final size:103
Alignment explanation
Indices: 50677075--50677282 Score: 398
Period size: 103 Copynumber: 2.0 Consensus size: 103
50677065 TCGAAAATAT
50677075 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACGGTGAGGTCTGAGGCATGGGCGCCGGCCAGGG
1 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACGGTGAGGTCTGAGGCATGGGCGCCGGCCAGGG
*
50677140 CTTTTTTCATTCATGCTTGCAAAGATGCGTTAGTGCCA
66 CTTTTTTCATTCAAGCTTGCAAAGATGCGTTAGTGCCA
50677178 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACGGTGAGGTCTGAGGCATGGGCGCCGGCCAGGG
1 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACGGTGAGGTCTGAGGCATGGGCGCCGGCCAGGG
*
50677243 CTTTTTTCATTCAAGCTTGCGAAGATGCGTTAGTGCCA
66 CTTTTTTCATTCAAGCTTGCAAAGATGCGTTAGTGCCA
50677281 GA
1 GA
50677283 TGTTATCACT
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.20, C:0.19, G:0.36, T:0.25
Consensus pattern (103 bp):
GAGTGGTAGTCGAGATGCTACGAGGGATTCTACGGTGAGGTCTGAGGCATGGGCGCCGGCCAGGG
CTTTTTTCATTCAAGCTTGCAAAGATGCGTTAGTGCCA
Found at i:50680478 original size:21 final size:21
Alignment explanation
Indices: 50680454--50680494 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
50680444 ATTGAGAAGG
50680454 CTACTTGGGAACCCGAGGAGT
1 CTACTTGGGAACCCGAGGAGT
50680475 CTACTTGGGAACCCGAGGAG
1 CTACTTGGGAACCCGAGGAG
50680495 ACCATGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.17
Consensus pattern (21 bp):
CTACTTGGGAACCCGAGGAGT
Found at i:50690504 original size:108 final size:109
Alignment explanation
Indices: 50690314--50690510 Score: 333
Period size: 108 Copynumber: 1.8 Consensus size: 109
50690304 CCAATTTAGT
**
50690314 TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGTTTATATAACTGGGTTTGTG
1 TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGCATATATAACTGGGTTTGTG
50690379 GTTTGACAAGCGTATACAAAATATTATGTAAGGCATATAAAGTA
66 GTTTGACAAGCGTATACAAAATATTATGTAAGGCATATAAAGTA
* *
50690423 TTATATTATGTATCTCCATTGTTATCAAATTTCG-AAATGGTTTGCATATATAATTGGGTTTGTG
1 TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGCATATATAACTGGGTTTGTG
* *
50690487 GTTTGATAAGCGTATACAAGATAT
66 GTTTGACAAGCGTATACAAAATAT
50690511 AAAGTATCTA
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 49 0.60
109 33 0.40
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (109 bp):
TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGCATATATAACTGGGTTTGTG
GTTTGACAAGCGTATACAAAATATTATGTAAGGCATATAAAGTA
Found at i:50696533 original size:20 final size:20
Alignment explanation
Indices: 50696486--50696533 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
50696476 AATCAGATAA
50696486 TAACTAACAACTAACTACTT
1 TAACTAACAACTAACTACTT
* **
50696506 T-GCTTAACAACTAACTTTTT
1 TAAC-TAACAACTAACTACTT
50696526 TAACTAAC
1 TAACTAAC
50696534 TGCAACAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
19 1 0.05
20 20 0.91
21 1 0.05
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (20 bp):
TAACTAACAACTAACTACTT
Found at i:50709193 original size:42 final size:43
Alignment explanation
Indices: 50709137--50709218 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
50709127 CCTAATTGGG
50709137 AAAATAGTTCTCTTA-TTCTAATAAACTACTAAAACATAAGGA
1 AAAATAGTTCTCTTATTTCTAATAAACTACTAAAACATAAGGA
*
50709179 AAAATAGTTCTCTTATTTCTAATAAACTACTAAAAGATAA
1 AAAATAGTTCTCTTATTTCTAATAAACTACTAAAACATAA
50709219 AATAAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
42 15 0.39
43 23 0.61
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (43 bp):
AAAATAGTTCTCTTATTTCTAATAAACTACTAAAACATAAGGA
Found at i:50709290 original size:19 final size:19
Alignment explanation
Indices: 50709250--50709288 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
50709240 TGAATAAAAC
*
50709250 TTATCTACTTAAATAAGAT
1 TTATCTACCTAAATAAGAT
50709269 TTATCTACCTAAATAA-AT
1 TTATCTACCTAAATAAGAT
50709287 TT
1 TT
50709289 TAAATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.44
Consensus pattern (19 bp):
TTATCTACCTAAATAAGAT
Found at i:50716393 original size:24 final size:24
Alignment explanation
Indices: 50716365--50716417 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
50716355 TTAGTAAGTC
* *
50716365 AAATAAACTATGCTAATAAATATT
1 AAATAAACTATACTAATAAATACT
* *
50716389 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
50716413 AAATA
1 AAATA
50716418 TTCTAGAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:50720987 original size:51 final size:51
Alignment explanation
Indices: 50720919--50721022 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 51
50720909 AATAACAAAT
** * *
50720919 TTAGCCCTCAACTTTTACATAT-TATATCAATTT-AGTCATAATTTTAAAAAA
1 TTAGCCCTCAAAATTTACAAATGT-TATCAATTTGA-TCATAATTCTAAAAAA
* *
50720970 TTAGCCCTCAAAATTTACAAATGTTCTCAATTTGATCCTAATTCTAAAAAA
1 TTAGCCCTCAAAATTTACAAATGTTATCAATTTGATCATAATTCTAAAAAA
50721021 TT
1 TT
50721023 TTAAATATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 43 0.96
52 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.39
Consensus pattern (51 bp):
TTAGCCCTCAAAATTTACAAATGTTATCAATTTGATCATAATTCTAAAAAA
Found at i:50721188 original size:20 final size:19
Alignment explanation
Indices: 50721150--50721189 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50721140 CCCGTCCCTT
*
50721150 TCCCTTTCCCCCACCACCA
1 TCCCTCTCCCCCACCACCA
*
50721169 TCCCTCTCCCTCCTCCACCA
1 TCCCTCTCCC-CCACCACCA
50721189 T
1 T
50721190 TGTCTCTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.12, C:0.62, G:0.00, T:0.25
Consensus pattern (19 bp):
TCCCTCTCCCCCACCACCA
Found at i:50721313 original size:12 final size:12
Alignment explanation
Indices: 50721289--50721321 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50721279 GGGGAATTTT
50721289 TTAATAT-AATA
1 TTAATATAAATA
50721300 TTAATATAAATA
1 TTAATATAAATA
*
50721312 TTAGTATAAA
1 TTAATATAAA
50721322 ATTTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 7 0.35
12 13 0.65
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (12 bp):
TTAATATAAATA
Found at i:50730610 original size:5 final size:5
Alignment explanation
Indices: 50730600--50730624 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50730590 CATACAGAAA
50730600 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
50730625 TGGTTCACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:50736898 original size:3 final size:3
Alignment explanation
Indices: 50736890--50736928 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
50736880 GATCATCCAA
50736890 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50736929 GGTCAAGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Done.