Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 169 of 185
Found at i:50740397 original size:31 final size:32
Alignment explanation
Indices: 50740318--50740397 Score: 76
Period size: 33 Copynumber: 2.4 Consensus size: 32
50740308 AAATTAATTT
*
50740318 ATATTTTATTTATCATTATATTAAATTATTTAA
1 ATATTTTA-TTATCATTATATTAAATTATTAAA
*
50740351 ATATCGCTTATTATCA-TAT-TTAAAATT-TTAAA
1 ATAT--TTTATTATCATTATATT-AAATTATTAAA
50740383 ATATTTTATGTATCA
1 ATATTTTAT-TATCA
50740398 CTAGTTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
30 4 0.10
31 5 0.12
32 10 0.25
33 12 0.30
34 6 0.15
35 3 0.08
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (32 bp):
ATATTTTATTATCATTATATTAAATTATTAAA
Found at i:50744254 original size:19 final size:19
Alignment explanation
Indices: 50744209--50744255 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
50744199 ATCAAATTAA
*
50744209 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
50744228 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
50744247 AATAAAAAT
1 AATAAAAAT
50744256 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:50748388 original size:14 final size:14
Alignment explanation
Indices: 50748369--50748398 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
50748359 AAATCAAAGG
50748369 GATGGAGATTTAGA
1 GATGGAGATTTAGA
50748383 GATGGAGATTTAGA
1 GATGGAGATTTAGA
50748397 GA
1 GA
50748399 AGCAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.27
Consensus pattern (14 bp):
GATGGAGATTTAGA
Found at i:50748518 original size:14 final size:14
Alignment explanation
Indices: 50748499--50748528 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
50748489 AATGGTAGAA
50748499 GGATTTTGATTTGG
1 GGATTTTGATTTGG
50748513 GGATTTTGATTTGG
1 GGATTTTGATTTGG
50748527 GG
1 GG
50748529 GAAAAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (14 bp):
GGATTTTGATTTGG
Found at i:50748573 original size:13 final size:13
Alignment explanation
Indices: 50748557--50748590 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
50748547 TGGGGATACC
50748557 GATTTTAGGGGGA
1 GATTTTAGGGGGA
50748570 GATTTTAGGGGGA
1 GATTTTAGGGGGA
*
50748583 AATTTTAG
1 GATTTTAG
50748591 ACGTTCCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (13 bp):
GATTTTAGGGGGA
Found at i:50749993 original size:21 final size:22
Alignment explanation
Indices: 50749958--50749998 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
50749948 TGTTTTTTGG
50749958 AGTTTAGGGTTTTAGGGGTTAT
1 AGTTTAGGGTTTTAGGGGTTAT
*
50749980 AGTTTA-GTTTTTAGGGGTT
1 AGTTTAGGGTTTTAGGGGTT
50749999 TTTAGGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (22 bp):
AGTTTAGGGTTTTAGGGGTTAT
Found at i:50750055 original size:54 final size:53
Alignment explanation
Indices: 50749959--50750074 Score: 133
Period size: 54 Copynumber: 2.2 Consensus size: 53
50749949 GTTTTTTGGA
* * *
50749959 GTTTAGGGTTTTAGGGGTTATAGTTTAGTTTTTAGGGGTTTTTAGGATTTAGAG
1 GTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAG-G
* ** * * *
50750013 GTTTAGTGTTTTAGGGGTTATAGATTAGTGTTTATTATTTTTTGGGGTTTAGG
1 GTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAGG
50750066 GTTTTAGGG
1 G-TTTAGGG
50750075 ATTATATGAC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (53 bp):
GTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAGG
Found at i:50750212 original size:41 final size:41
Alignment explanation
Indices: 50750085--50750203 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
50750075 ATTATATGAC
* * *
50750085 TTTTAGCGGCGTTTTATCGAAAGCGCCGTTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
50750126 TTTTAGCGGCGTTTTCCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
50750167 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
50750204 CGTGTTTTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:50752404 original size:11 final size:11
Alignment explanation
Indices: 50752388--50752412 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50752378 ATCCCGTGTA
50752388 AGAAATTACTT
1 AGAAATTACTT
50752399 AGAAATTACTT
1 AGAAATTACTT
50752410 AGA
1 AGA
50752413 TGATATTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (11 bp):
AGAAATTACTT
Found at i:50757421 original size:21 final size:21
Alignment explanation
Indices: 50757395--50757438 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
50757385 AGGCGCATCC
50757395 AAAGTATTTTATCTCCAGAAA
1 AAAGTATTTTATCTCCAGAAA
50757416 AAAGTATTTTATCTCCAGAAA
1 AAAGTATTTTATCTCCAGAAA
50757437 AA
1 AA
50757439 CGGTGGTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (21 bp):
AAAGTATTTTATCTCCAGAAA
Found at i:50759733 original size:17 final size:17
Alignment explanation
Indices: 50759707--50759771 Score: 60
Period size: 17 Copynumber: 3.6 Consensus size: 17
50759697 CAACGTTTTC
*
50759707 TTTAACATATTTAAAAT
1 TTTAATATATTTAAAAT
*
50759724 TTTAATATATTTAAATTTT
1 TTTAATATATTTAAA--AT
*
50759743 TTTAAGT-TTTTTAAAAT
1 TTTAA-TATATTTAAAAT
50759760 TTTAAATATATT
1 TTT-AATATATT
50759772 AAGAAATCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
17 19 0.50
18 5 0.13
19 13 0.34
20 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
TTTAATATATTTAAAAT
Found at i:50759738 original size:62 final size:63
Alignment explanation
Indices: 50759609--50759739 Score: 160
Period size: 62 Copynumber: 2.1 Consensus size: 63
50759599 ATATTAAAAT
* * * * * *
50759609 TTTAAAAATTTAAATTTGCTTATACTTAAATTTTCTTTTAATATGTTTCAAAATTTTAATAGA
1 TTTAAATATTTAAAATTGATTATACTCAAATTTTCTTTTAACATATTTCAAAATTTTAATAGA
* *
50759672 -TTAAATATTTAAAATTGATTATACTCAACGTTTTC-TTTAACATATTT-AAAATTTTAATATA
1 TTTAAATATTTAAAATTGATTATACTCAA-ATTTTCTTTTAACATATTTCAAAATTTTAATAGA
50759733 TTTAAAT
1 TTTAAAT
50759740 TTTTTTAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
61 13 0.22
62 40 0.69
63 5 0.09
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.50
Consensus pattern (63 bp):
TTTAAATATTTAAAATTGATTATACTCAAATTTTCTTTTAACATATTTCAAAATTTTAATAGA
Found at i:50760062 original size:20 final size:21
Alignment explanation
Indices: 50760029--50760068 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
50760019 ACTTTCAAAA
*
50760029 TTAATTATACTTAATATTTTT
1 TTAATTATACTTAAAATTTTT
*
50760050 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
50760069 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
TTAATTATACTTAAAATTTTT
Found at i:50763248 original size:21 final size:20
Alignment explanation
Indices: 50763214--50763252 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
50763204 TTAATCAACC
50763214 ACTTTATATATAATAAAAAT
1 ACTTTATATATAATAAAAAT
*
50763234 ACTTATATTTATAATAAAA
1 ACTT-TATATATAATAAAA
50763253 TAGAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
ACTTTATATATAATAAAAAT
Found at i:50774635 original size:16 final size:17
Alignment explanation
Indices: 50774610--50774645 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
50774600 AAAACTTATG
*
50774610 TTTTCTATCCTTTCAAT
1 TTTTCTATCCTTCCAAT
50774627 TTTTC-ATCCTTCCAAT
1 TTTTCTATCCTTCCAAT
50774643 TTT
1 TTT
50774646 CTTTCTACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTCTATCCTTCCAAT
Found at i:50778842 original size:3 final size:3
Alignment explanation
Indices: 50778836--50778860 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
50778826 TTCTATTCAT
50778836 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
50778861 AACATGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:50779620 original size:17 final size:18
Alignment explanation
Indices: 50779592--50779625 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
50779582 GTTTAATTGA
50779592 ATAAATTATTAAAAAAAC
1 ATAAATTATTAAAAAAAC
50779610 ATAAA-TATTAAAAAAA
1 ATAAATTATTAAAAAAA
50779626 TATATGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAATTATTAAAAAAAC
Found at i:50780250 original size:16 final size:16
Alignment explanation
Indices: 50780197--50780250 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
50780187 ATTTACTATT
50780197 TATAA-AAGATATTTA
1 TATAATAAGATATTTA
**
50780212 T-TAATTAAG-TAACTA
1 TATAA-TAAGATATTTA
*
50780227 TATTATAAGATATTTA
1 TATAATAAGATATTTA
50780243 TATAATAA
1 TATAATAA
50780251 ATAAATTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 7
0.69 0.14 0.17
Matches are distributed among these distances:
14 3 0.10
15 10 0.34
16 16 0.55
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (16 bp):
TATAATAAGATATTTA
Found at i:50781624 original size:18 final size:18
Alignment explanation
Indices: 50781603--50781653 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
50781593 TAACTAATTA
50781603 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
**
50781621 TTACTGAATAAACGACTG
1 TTACTGAATAATTGACTG
50781639 TTACTGAATAATTGA
1 TTACTGAATAATTGA
50781654 TTAATACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:50781661 original size:18 final size:18
Alignment explanation
Indices: 50781586--50781681 Score: 79
Period size: 18 Copynumber: 5.4 Consensus size: 18
50781576 TAAATAAAAG
* *
50781586 TACTGAATAACTAATTAT
1 TACTGAATAACTGATTGT
* *
50781604 TACTGAATAATTGACTGT
1 TACTGAATAACTGATTGT
*
50781622 TACTGAATAAAC-GACTGT
1 TACTGAAT-AACTGATTGT
* **
50781640 TACTGAATAATTGATTAA
1 TACTGAATAACTGATTGT
* *
50781658 TACTG-ATGACTGATTGA
1 TACTGAATAACTGATTGT
50781675 TACTGAA
1 TACTGAA
50781682 CAATAAAGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
17 16 0.25
18 45 0.71
19 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:50785535 original size:21 final size:21
Alignment explanation
Indices: 50785497--50785536 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
50785487 ATTTGTATAT
* **
50785497 ACAATCTATATTCTATTAAAA
1 ACAATATATATTAGATTAAAA
50785518 ACAATATATATTAGATTAA
1 ACAATATATATTAGATTAA
50785537 TATATTAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (21 bp):
ACAATATATATTAGATTAAAA
Found at i:50786788 original size:3 final size:3
Alignment explanation
Indices: 50786782--50786808 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
50786772 CGTCTTATGC
50786782 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
50786809 CGTTTTCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:50787410 original size:99 final size:99
Alignment explanation
Indices: 50787280--50787483 Score: 372
Period size: 99 Copynumber: 2.1 Consensus size: 99
50787270 TGTCACCTCG
*
50787280 AAATAAGAATTTGTTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
1 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
*
50787345 AACTTATTGGGTTTTGATTTCTTTCGTTTACTCT
66 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
* *
50787379 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAATGTGCTCT
1 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
50787444 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
66 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
50787478 AAATAA
1 AAATAA
50787484 TCGAATACCC
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 101 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.39
Consensus pattern (99 bp):
AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
Found at i:50796022 original size:51 final size:51
Alignment explanation
Indices: 50795946--50796183 Score: 314
Period size: 51 Copynumber: 4.8 Consensus size: 51
50795936 TTTGAAATTG
50795946 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
50795997 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
* **
50796048 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACT-GTTAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA-GAAAA-TAAATAA
** **
50796100 GATAAA-T-A--A--TT-AAATAAATTA-AAACTGTTATAAGAAAATAAATAA
1 G-TAAAGTGAGGATTTTGAAATTGATTAGAAACT-AAATAAGAAAATAAATAA
50796145 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA
50796184 TTAAAACTGT
Statistics
Matches: 160, Mismatches: 14, Indels: 26
0.80 0.07 0.13
Matches are distributed among these distances:
44 5 0.03
45 14 0.09
46 13 0.08
47 2 0.01
48 1 0.01
49 1 0.01
50 2 0.01
51 103 0.64
52 14 0.09
53 5 0.03
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.29
Consensus pattern (51 bp):
GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
Found at i:50796167 original size:97 final size:97
Alignment explanation
Indices: 50796032--50796215 Score: 368
Period size: 97 Copynumber: 1.9 Consensus size: 97
50796022 TAGAAACTAA
50796032 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
1 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
50796097 TAAGATAAATAATTAAATAAATTAAAACTGTT
66 TAAGATAAATAATTAAATAAATTAAAACTGTT
50796129 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
1 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
50796194 TAAGATAAATAATTAAATAAAT
66 TAAGATAAATAATTAAATAAAT
50796216 CAGAAATTAA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.54, C:0.03, G:0.12, T:0.30
Consensus pattern (97 bp):
ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
TAAGATAAATAATTAAATAAATTAAAACTGTT
Found at i:50797108 original size:5 final size:5
Alignment explanation
Indices: 50797098--50797154 Score: 71
Period size: 5 Copynumber: 11.0 Consensus size: 5
50797088 AAGCTAAATT
*
50797098 AATAA AAT-A AATAA AATAA AATAAA AATAAA TAATAA AATAA AACAA
1 AATAA AATAA AATAA AATAA AAT-AA AAT-AA -AATAA AATAA AATAA
50797145 AATAA AATAA
1 AATAA AATAA
50797155 TATCTTCCTA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
4 4 0.09
5 30 0.64
6 10 0.21
7 3 0.06
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:50797119 original size:23 final size:23
Alignment explanation
Indices: 50797102--50797156 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 23
50797092 TAAATTAATA
50797102 AAATAAATAAAATAAAATAAAAAT
1 AAAT-AATAAAATAAAATAAAAAT
*
50797126 AAATAATAAAATAAAA-CAAAAT
1 AAATAATAAAATAAAATAAAAAT
50797148 AAAATAATA
1 -AAATAATA
50797157 TCTTCCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 5 0.17
23 20 0.69
24 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATAATAAAATAAAATAAAAAT
Found at i:50797129 original size:33 final size:33
Alignment explanation
Indices: 50797092--50797154 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
50797082 TAGCTTAAGC
*
50797092 TAAATTAATAAAAT-AAATAAAATAAAATAAAAA
1 TAAA-TAATAAAATAAAACAAAATAAAATAAAAA
50797125 TAAATAATAAAATAAAACAAAATAAAATAA
1 TAAATAATAAAATAAAACAAAATAAAATAA
50797155 TATCTTCCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 9 0.32
33 19 0.68
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (33 bp):
TAAATAATAAAATAAAACAAAATAAAATAAAAA
Found at i:50797156 original size:18 final size:17
Alignment explanation
Indices: 50797092--50797156 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 17
50797082 TAGCTTAAGC
* *
50797092 TAAATTAATAAAATAAA
1 TAAAATAATAAAAAAAA
50797109 TAAAATAAAATAAAAATAAA
1 TAAAAT--AATAAAAA-AAA
50797129 TAATAA-AATAAAACAAAA
1 TAA-AATAATAAAA-AAAA
50797147 TAAAATAATA
1 TAAAATAATA
50797157 TCTTCCTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
17 7 0.17
18 17 0.43
19 8 0.20
20 6 0.15
21 2 0.05
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (17 bp):
TAAAATAATAAAAAAAA
Found at i:50802075 original size:9 final size:9
Alignment explanation
Indices: 50802061--50802103 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
50802051 TTCAAATCTC
50802061 TCAAAACCT
1 TCAAAACCT
*
50802070 TTAAAACCT
1 TCAAAACCT
*
50802079 TCAAAATCT
1 TCAAAACCT
*
50802088 CCCAAAACCT
1 -TCAAAACCT
50802098 TCAAAA
1 TCAAAA
50802104 GTATCATAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (9 bp):
TCAAAACCT
Found at i:50804339 original size:24 final size:24
Alignment explanation
Indices: 50804251--50804338 Score: 158
Period size: 24 Copynumber: 3.7 Consensus size: 24
50804241 GAAATGATTT
*
50804251 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGTA
50804275 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
*
50804299 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
50804323 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
50804339 GGTTAACATG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.19, C:0.14, G:0.32, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGTA
Found at i:50804354 original size:24 final size:24
Alignment explanation
Indices: 50804251--50804356 Score: 97
Period size: 24 Copynumber: 4.4 Consensus size: 24
50804241 GAAATGATTT
* *
50804251 TGGCACTATGTGTGCGAATTTGA-A
1 TGGCACTATGTGTGCGGA-TTAACA
* ***
50804275 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGGATTAACA
***
50804299 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTAACA
*
50804323 TGGCACTATGTGTGCGGGTTAACA
1 TGGCACTATGTGTGCGGATTAACA
*
50804347 TGGTACTATG
1 TGGCACTATG
50804357 GATATGAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
23 2 0.03
24 71 0.97
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTAACA
Found at i:50804355 original size:48 final size:48
Alignment explanation
Indices: 50804251--50804356 Score: 140
Period size: 48 Copynumber: 2.2 Consensus size: 48
50804241 GAAATGATTT
***
50804251 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTAACA
* * **
50804299 TGGCACTATGTGTGCGGATTTGTATGGCACTATGTGTGCGGGTTAACA
1 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTAACA
*
50804347 TGGTACTATG
1 TGGCACTATG
50804357 GATATGAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (48 bp):
TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTAACA
Found at i:50804867 original size:69 final size:70
Alignment explanation
Indices: 50804736--50804867 Score: 203
Period size: 69 Copynumber: 1.9 Consensus size: 70
50804726 AGTTTATTAC
* * * * * *
50804736 TAATTAATTTGCTGTTGTGATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
50804801 TTAGT
66 TTAGT
50804806 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
50804868 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
69 36 0.64
70 20 0.36
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:50805075 original size:39 final size:39
Alignment explanation
Indices: 50805023--50805208 Score: 246
Period size: 39 Copynumber: 4.7 Consensus size: 39
50805013 ATTTGATGTA
*
50805023 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
50805062 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** *
50805101 TATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
50805141 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
50805180 TATCCGGACTTATGGTCCGCAGGCTTCGT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGT
50805209 ATTGGTACTA
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 94 0.73
40 34 0.27
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:50805184 original size:79 final size:79
Alignment explanation
Indices: 50805021--50805191 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 79
50805011 ATATTTGATG
* ** * * *
50805021 TATATCCAGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGG
1 TATATCCGGACTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
* *
50805085 CTTCATGCTGGAAT
66 CTTCATGCTAGAAC
* *
50805099 TGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
1 TATATCCGGACTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
* *
50805164 CTTCGTGCTAGTAC
66 CTTCATGCTAGAAC
50805178 TATATCCGGACTTA
1 TATATCCGGACTTA
50805192 TGGTCCGCAG
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
78 10 0.13
79 68 0.87
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (79 bp):
TATATCCGGACTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
CTTCATGCTAGAAC
Found at i:50805231 original size:118 final size:118
Alignment explanation
Indices: 50805023--50805245 Score: 302
Period size: 118 Copynumber: 1.9 Consensus size: 118
50805013 ATTTGATGTA
* * * * *
50805023 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCAGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * *
50805088 CATGCTGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
66 CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
* * *
50805141 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGTACTATATCCGGACTTATGGTCCGCAGGCTT
1 TATCCAGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * * * *
50805206 CGTATTGGTACTATATCTGGGCTTAAAGTCCCGTAGGCTT
66 CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTT
50805246 TGTGTTGGTG
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
118 89 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (118 bp):
TATCCAGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
Found at i:50805254 original size:40 final size:39
Alignment explanation
Indices: 50805021--50805254 Score: 137
Period size: 39 Copynumber: 5.9 Consensus size: 39
50805011 ATATTTGATG
* * ** * *
50805021 TATATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
* * * ** * *
50805060 TGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
* * * * ** * *
50805099 TGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAAG-TCCGCAGGCTTCGTATTGGTAC
* * ** *
50805139 TGTATCCGGACTT-AAGATCCGCAGACTTCGTGCTAGTAC
1 TATATCCGGACTTAAAG-TCCGCAGGCTTCGTATTGGTAC
**
50805178 TATATCCGGACTTATGGTCCGCAGGCTTCGTATTGGTAC
1 TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
* * * * *
50805217 TATATCTGGGCTTAAAGTCCCGTAGGCTTTGTGTTGGT
1 TATATCCGGACTTAAAGT-CCGCAGGCTTCGTATTGGT
50805255 GATTGAATTC
Statistics
Matches: 163, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
39 115 0.71
40 48 0.29
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
Found at i:50807561 original size:19 final size:19
Alignment explanation
Indices: 50807516--50807560 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
50807506 CAGTATAAAA
50807516 ATATGTTTAATATTATTAAT
1 ATAT-TTTAATATTATTAAT
50807536 ATATTTTAAT-TTATT-AT
1 ATATTTTAATATTATTAAT
50807553 ATAATTTT
1 AT-ATTTT
50807561 TTTCTTGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 6 0.25
20 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATATTTTAATATTATTAAT
Found at i:50810012 original size:17 final size:17
Alignment explanation
Indices: 50809992--50810052 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
50809982 ATTTCAAGAC
50809992 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* * ***
50810009 TTATTTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
50810028 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
50810046 TTATGTA
1 TTATGTA
50810053 GTAATTCAAA
Statistics
Matches: 31, Mismatches: 10, Indels: 6
0.66 0.21 0.13
Matches are distributed among these distances:
17 15 0.48
18 4 0.13
19 4 0.13
20 8 0.26
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:50810028 original size:37 final size:37
Alignment explanation
Indices: 50809987--50810092 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
50809977 TGTTAATTTC
*
50809987 AAGACTTATGTAATGTTTTTAATTATTTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
50810024 AAGACTTATGTAATGTTTTTAATTATGTAGTAATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
50810061 AAGACTTATGTAATATTTTTAATTATGTAGTG
1 AAGACTTATGTAATGTTTTTAATTATGTAGTG
50810093 TAGTGATTCA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:50810086 original size:17 final size:17
Alignment explanation
Indices: 50810029--50810089 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
50810019 ATTCAAAGAC
*
50810029 TTATGTAATGTTTTTAA
1 TTATGTAATATTTTTAA
* ***
50810046 TTATGTAGTAATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
50810065 CTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
50810083 TTATGTA
1 TTATGTA
50810090 GTGTAGTGAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 4 0.12
19 5 0.16
20 8 0.25
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.51
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:50810114 original size:9 final size:9
Alignment explanation
Indices: 50810102--50810168 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
50810092 GTAGTGATTC
*
50810102 AATTCGGTC
1 AATTCGGTT
50810111 AATTCGGTT
1 AATTCGGTT
*
50810120 AATTCGGTC
1 AATTCGGTT
50810129 AATTCGGTT
1 AATTCGGTT
*
50810138 AATTCGATT
1 AATTCGGTT
*
50810147 AATTCGGGT
1 AATTCGGTT
50810156 AATTCGGTT
1 AATTCGGTT
50810165 AATT
1 AATT
50810169 TTTAACCAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:50813625 original size:37 final size:37
Alignment explanation
Indices: 50813576--50813647 Score: 87
Period size: 37 Copynumber: 1.9 Consensus size: 37
50813566 TTCAATTTTC
50813576 CACTCAATATTCA-C-ATATTTTATTCAATATCAATAAT
1 CACTCAATATTCATCAAT-TTTTATTCAAT-TCAATAAT
*
50813613 CACT-AATAATTCATGAATTTTTATTCAATTCAATA
1 CACTCAAT-ATTCATCAATTTTTATTCAATTCAATA
50813648 CCATAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
36 3 0.10
37 15 0.48
38 11 0.35
39 2 0.06
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.42
Consensus pattern (37 bp):
CACTCAATATTCATCAATTTTTATTCAATTCAATAAT
Found at i:50813658 original size:3 final size:3
Alignment explanation
Indices: 50813650--50813682 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
50813640 ATTCAATACC
50813650 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50813683 CTTACCATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50814315 original size:54 final size:54
Alignment explanation
Indices: 50814253--50814360 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
50814243 AAAGGGGCTA
*
50814253 AATTGACTTACCTATTAAACTTCTAAGCTTCAAAATCCCTATTTCCCCTTTTTC
1 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
50814307 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
1 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
50814361 CTTTCTTTCC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.29, G:0.04, T:0.40
Consensus pattern (54 bp):
AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
Found at i:50817310 original size:53 final size:49
Alignment explanation
Indices: 50817235--50817383 Score: 149
Period size: 52 Copynumber: 2.9 Consensus size: 49
50817225 CGGATCACAT
* *
50817235 ATCATACTGATGCCATATCCCAGATATGGTCTTATACAGAGGCACATTATCAC
1 ATCATACCGATGCCATAGCCCAG-TATGGTCTTATAC-G-GGCACA-TATCAC
* * *
50817288 ATCATACCGATGCCATAGCCCAGTCATGGTTTTATATGGGAGTACATATCAC
1 ATCATACCGATGCCATAGCCCAGT-ATGGTCTTATA-CGG-GCACATATCAC
50817340 A--ATGCACCGATGCCATAGCCCAGCTATGGTCTTATACGGGCACA
1 ATCAT--ACCGATGCCATAGCCCAG-TATGGTCTTATACGGGCACA
50817384 CACATCACAT
Statistics
Matches: 82, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
50 6 0.07
51 2 0.02
52 37 0.45
53 37 0.45
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
ATCATACCGATGCCATAGCCCAGTATGGTCTTATACGGGCACATATCAC
Found at i:50818029 original size:35 final size:35
Alignment explanation
Indices: 50817990--50818059 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
50817980 AGAACCCCAG
50817990 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
1 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
50818025 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
1 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
50818060 CTCATGGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (35 bp):
TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
Found at i:50827725 original size:33 final size:33
Alignment explanation
Indices: 50827683--50827748 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
50827673 TGCATTAAGT
*
50827683 TAGATTTCTAGATTTTTTTTAGTAAAATCCCTG
1 TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
50827716 TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
1 TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
50827749 CTCCTCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (33 bp):
TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
Found at i:50831764 original size:17 final size:18
Alignment explanation
Indices: 50831742--50831782 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
50831732 TATCAACTGT
50831742 AAAATG-AACA-GAAAATA
1 AAAATGAAACAGGAAAA-A
50831759 AAAATGAAACAGGAAAAA
1 AAAATGAAACAGGAAAAA
50831777 AAAATG
1 AAAATG
50831783 GTGCGCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.27
18 11 0.50
19 5 0.23
ACGTcount: A:0.71, C:0.05, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAATGAAACAGGAAAAA
Found at i:50840880 original size:5 final size:5
Alignment explanation
Indices: 50840870--50840894 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50840860 TTAATTCGAT
50840870 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
50840895 ATCAGATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:50841334 original size:18 final size:18
Alignment explanation
Indices: 50841308--50841358 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
50841298 CTTCTGCCAC
*
50841308 TCTTCTTTTCTTTTCT-TT
1 TCTTTTTTTCTTTT-TATT
*
50841326 TCTTTTTTTATTTTTATT
1 TCTTTTTTTCTTTTTATT
50841344 T-TTTTTTCTCTTTTT
1 TCTTTTTT-TCTTTTT
50841359 TTAATTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 7 0.25
18 21 0.75
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (18 bp):
TCTTTTTTTCTTTTTATT
Found at i:50841340 original size:24 final size:25
Alignment explanation
Indices: 50841313--50841359 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
50841303 GCCACTCTTC
*
50841313 TTTTCTTTTCTTTTCT-TTTTTTAT
1 TTTTATTTTCTTTTCTCTTTTTTAT
*
50841337 TTTTATTTTTTTTTCTCTTTTTT
1 TTTTATTTTCTTTTCTCTTTTTT
50841360 TAATTTGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (25 bp):
TTTTATTTTCTTTTCTCTTTTTTAT
Found at i:50852159 original size:12 final size:12
Alignment explanation
Indices: 50852142--50852176 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
50852132 TCAAAGAAAA
50852142 AATAAAATGAAT
1 AATAAAATGAAT
*
50852154 AATAAAATAAAT
1 AATAAAATGAAT
50852166 AATAACAATGA
1 AATAA-AATGA
50852177 TAACAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.23
Consensus pattern (12 bp):
AATAAAATGAAT
Found at i:50853884 original size:53 final size:52
Alignment explanation
Indices: 50853752--50853891 Score: 158
Period size: 52 Copynumber: 2.7 Consensus size: 52
50853742 GATATGTTCG
*
50853752 CCCGTATAAGACCATAGTTGGGCTATGGCATTGGTGCAATGTGATACATGTT
1 CCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGCAATGTGATACATGTT
* * * **
50853804 CCCGCATAAGACTATAGCTGGGCTATGG-AGTCGGTGTGATGTGATA-ATGTGAT
1 CCCGTATAAGACCATAGTTGGGCTATGGCA-TCGGTGCAATGTGATACATGT--T
* * *
50853857 TCCGTATAAGACCATATTTGGGATATGGCATCGGT
1 CCCGTATAAGACCATAGTTGGGCTATGGCATCGGT
50853892 ATTATATGTG
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
51 5 0.07
52 38 0.53
53 28 0.39
54 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (52 bp):
CCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGCAATGTGATACATGTT
Found at i:50871752 original size:5 final size:5
Alignment explanation
Indices: 50871744--50871769 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
50871734 AAAAAAATAA
50871744 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
50871770 CAATTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:50886023 original size:29 final size:29
Alignment explanation
Indices: 50885985--50886056 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
50885975 ACAAAATAGT
50885985 AACATAAGTGACTAAAACGTAAAATTTCA
1 AACATAAGTGACTAAAACGTAAAATTTCA
50886014 AACATAAGTGACTAAAACGTAAAATTTCA
1 AACATAAGTGACTAAAACGTAAAATTTCA
*
50886043 AACATAAGTAACTA
1 AACATAAGTGACTA
50886057 TTTTTATAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.53, C:0.14, G:0.10, T:0.24
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAAAATTTCA
Found at i:50887093 original size:11 final size:11
Alignment explanation
Indices: 50887077--50887103 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
50887067 GTTGCCAGCT
50887077 TGCTTGAGAAA
1 TGCTTGAGAAA
50887088 TGCTTGAGAAA
1 TGCTTGAGAAA
50887099 TGCTT
1 TGCTT
50887104 TTTGTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (11 bp):
TGCTTGAGAAA
Found at i:50892299 original size:22 final size:22
Alignment explanation
Indices: 50892275--50892318 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
50892265 TACACTTTTA
*
50892275 TTTTTAAATTTATTAAATAATAT
1 TTTTTAAATTT-TTAAAAAATAT
*
50892298 TTTTTTAATTTTTAAAAAATA
1 TTTTTAAATTTTTAAAAAATA
50892319 AATTTATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTTAAATTTTTAAAAAATAT
Found at i:50892364 original size:22 final size:23
Alignment explanation
Indices: 50892319--50892369 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
50892309 TTAAAAAATA
*
50892319 AATTTATATTAATAAATTGAGATTT
1 AATTTATAATAATAAATT-AGA-TT
50892344 AATTTATAATAA-AAATT-GATT
1 AATTTATAATAATAAATTAGATT
50892365 AATTT
1 AATTT
50892370 TGAAATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 7 0.28
22 2 0.08
24 5 0.20
25 11 0.44
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (23 bp):
AATTTATAATAATAAATTAGATT
Found at i:50893646 original size:19 final size:19
Alignment explanation
Indices: 50893618--50893661 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
50893608 TAAAGGATGT
* *
50893618 TTTTATTAATATATTAAAA
1 TTTTAATAATATAATAAAA
* *
50893637 TTTTAATAATTTAATATAA
1 TTTTAATAATATAATAAAA
50893656 TTTTAA
1 TTTTAA
50893662 AACTTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAATAATATAATAAAA
Found at i:50893668 original size:19 final size:18
Alignment explanation
Indices: 50893635--50893675 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
50893625 AATATATTAA
50893635 AATTTTAATAATTTAATAT
1 AATTTTAATAATTTAA-AT
50893654 AATTTTAA-AACTTTAAAT
1 AATTTTAATAA-TTTAAAT
50893672 AATT
1 AATT
50893676 CAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
AATTTTAATAATTTAAAT
Found at i:50893680 original size:28 final size:27
Alignment explanation
Indices: 50893628--50893695 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
50893618 TTTTATTAAT
* * *
50893628 ATATTAAAATTTTAATAATTTAATATA
1 ATATTAAAATTTAAATAATTCAATAAA
*
50893655 ATTTTAAAACTTTAAATAATTCAATAAA
1 ATATTAAAA-TTTAAATAATTCAATAAA
50893683 ATATTAAATATTT
1 ATATTAAA-ATTT
50893696 TACGTTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 8 0.24
28 25 0.74
29 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (27 bp):
ATATTAAAATTTAAATAATTCAATAAA
Found at i:50897903 original size:4 final size:4
Alignment explanation
Indices: 50897894--50897923 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
50897884 ATGCAAGTTT
50897894 CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CA
50897924 GATTCCCTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:50908056 original size:18 final size:17
Alignment explanation
Indices: 50908024--50908057 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50908014 ATCCGATATG
*
50908024 TTTTATTTTACTTTTAC
1 TTTTATTTTAATTTTAC
50908041 TTTTATTTTTAATTTTA
1 TTTTA-TTTTAATTTTA
50908058 GTCATGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTTTAATTTTAC
Found at i:50916690 original size:22 final size:23
Alignment explanation
Indices: 50916639--50916690 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
50916629 TTATTTAAAT
* *
50916639 TATTTT-ATAATTTATAAAATTT
1 TATTTTAATAATTAATAAAATTA
**
50916661 TAAATTAATAA-TAATAAAATTA
1 TATTTTAATAATTAATAAAATTA
50916683 TATTTTAA
1 TATTTTAA
50916691 CTCTCTTAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TATTTTAATAATTAATAAAATTA
Found at i:50920344 original size:15 final size:15
Alignment explanation
Indices: 50920324--50920401 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
50920314 TTTATGGAAA
50920324 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
50920339 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
50920353 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
50920369 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
50920383 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
50920399 ATC
1 ATC
50920402 GAGATATTGG
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:50920361 original size:30 final size:30
Alignment explanation
Indices: 50920320--50920401 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
50920310 CATATTTATG
*
50920320 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
50920350 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
50920380 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
50920402 GAGATATTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:50925007 original size:15 final size:15
Alignment explanation
Indices: 50924987--50925064 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
50924977 TTTATGGAAA
50924987 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
50925002 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
50925016 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
50925032 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
50925046 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
50925062 ATC
1 ATC
50925065 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 9 0.19
15 29 0.62
16 9 0.19
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:50925016 original size:30 final size:30
Alignment explanation
Indices: 50924980--50925064 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
50924970 ATCCATATTT
*
50924980 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
50925010 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
50925040 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
50925065 GAGATATTGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:50926067 original size:3 final size:3
Alignment explanation
Indices: 50926054--50926100 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
50926044 CTAAGATAAG
*
50926054 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50926101 CTATAAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:50928968 original size:46 final size:46
Alignment explanation
Indices: 50928911--50929184 Score: 433
Period size: 46 Copynumber: 6.0 Consensus size: 46
50928901 TTTGACATGA
* * * *
50928911 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCAGGT
** *
50928957 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
*
50929003 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
50929049 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
* *
50929095 TGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
*
50929141 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAG
50929185 AGAGCACACT
Statistics
Matches: 215, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 211 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
Found at i:50930835 original size:11 final size:11
Alignment explanation
Indices: 50930794--50930836 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
50930784 TTATATACTA
* *
50930794 ATAAAATAATA
1 ATAAAATATTT
50930805 ATAAAATATCTT
1 ATAAAATAT-TT
50930817 ATTAAAATATTT
1 A-TAAAATATTT
50930829 ATAAAATA
1 ATAAAATA
50930837 ATATTTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 15 0.54
12 5 0.18
13 8 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAAAATATTT
Found at i:50930877 original size:31 final size:30
Alignment explanation
Indices: 50930799--50930877 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
50930789 TACTAATAAA
* *
50930799 ATAATAAT-AAAATATCTTATTAAAATATTT
1 ATAA-AATAAAAATATCTAATTAAAATAATT
**
50930829 ATAAAATAATATTTATCTAATT-AAATAATT
1 ATAAAATAA-AAATATCTAATTAAAATAATT
50930859 ATAAAATATCAAAATATCT
1 ATAAAATA--AAAATATCT
50930878 CTAGCATCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
29 3 0.08
30 20 0.51
31 15 0.38
32 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATAAAAATATCTAATTAAAATAATT
Found at i:50936283 original size:50 final size:51
Alignment explanation
Indices: 50936177--50936303 Score: 195
Period size: 50 Copynumber: 2.5 Consensus size: 51
50936167 ATATGATCAG
* * *
50936177 GTAGCTGAAGCTATCACTTTTCACTTATCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCATTTGTCATTGATCAAATAAGT
*
50936228 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCA-TTTGTCATTGATCAAATAAGT
50936278 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
50936304 GTTGCCATGG
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTATCATTTGTCATTGATCAAATAAGT
Found at i:50938727 original size:90 final size:90
Alignment explanation
Indices: 50938632--50938810 Score: 349
Period size: 90 Copynumber: 2.0 Consensus size: 90
50938622 AATTGAAAAA
50938632 AAAATTAACGATGTGAACTTGATTTTTAAATTTGAAAAGTAAAAGGACTAAATTCTTGAAAATAA
1 AAAATTAACGATGTGAACTTGATTTTTAAATTTGAAAAGTAAAAGGACTAAATTCTTGAAAATAA
*
50938697 AAGTACAAAGACTAAATTACAAATC
66 AAGTACAAAGACTAAATTAAAAATC
50938722 AAAATTAACGATGTGAACTTGATTTTTAAATTTGAAAAGTAAAAGGACTAAATTCTTGAAAATAA
1 AAAATTAACGATGTGAACTTGATTTTTAAATTTGAAAAGTAAAAGGACTAAATTCTTGAAAATAA
50938787 AAGTACAAAGACTAAATTAAAAAT
66 AAGTACAAAGACTAAATTAAAAAT
50938811 TTATAAACTG
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 88 1.00
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (90 bp):
AAAATTAACGATGTGAACTTGATTTTTAAATTTGAAAAGTAAAAGGACTAAATTCTTGAAAATAA
AAGTACAAAGACTAAATTAAAAATC
Found at i:50938881 original size:15 final size:15
Alignment explanation
Indices: 50938861--50938928 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 15
50938851 ACACTACAAA
50938861 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
50938876 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
50938893 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
50938910 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
50938923 ATATTT
1 ATATTT
50938929 TCAATAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.25
15 12 0.27
16 1 0.02
17 7 0.16
18 1 0.02
19 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:50938978 original size:16 final size:16
Alignment explanation
Indices: 50938947--50938983 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
50938937 ATGTGAATAA
50938947 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
50938963 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
50938979 TATTA
1 TATTA
50938984 AAATAAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:50945094 original size:17 final size:18
Alignment explanation
Indices: 50945060--50945104 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
50945050 AATTCATGTG
50945060 TAATTTTATTATTTTTAA
1 TAATTTTATTATTTTTAA
50945078 TAATTTTATTA-TTTTAA
1 TAATTTTATTATTTTTAA
50945095 -AGATTTTATT
1 TA-ATTTTATT
50945105 TTTATTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.04
17 14 0.54
18 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TAATTTTATTATTTTTAA
Found at i:50946457 original size:20 final size:20
Alignment explanation
Indices: 50946434--50946471 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
50946424 AATATTTTGT
*
50946434 ATAATTATCTAAAATATTAG
1 ATAATTACCTAAAATATTAG
*
50946454 ATAATTACCTAAACTATT
1 ATAATTACCTAAAATATT
50946472 TCAATATCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (20 bp):
ATAATTACCTAAAATATTAG
Found at i:50947835 original size:60 final size:60
Alignment explanation
Indices: 50947751--50947869 Score: 186
Period size: 60 Copynumber: 2.0 Consensus size: 60
50947741 ATACTAAACT
* * * *
50947751 AAACACAACAATTTATAACTTAATCCTAAATTACTAATAACTTAATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
50947811 AAACACGAAAAATTT-TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACAC-AAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
50947870 TAAAAAAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 47 0.87
61 7 0.13
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:50949822 original size:27 final size:27
Alignment explanation
Indices: 50949790--50949845 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
50949780 TAGATTTTCA
50949790 AAGAATTCTTCATGTTAATACTTGATT
1 AAGAATTCTTCATGTTAATACTTGATT
50949817 AAGAATTCTTCATGTTAATACTTGATT
1 AAGAATTCTTCATGTTAATACTTGATT
50949844 AA
1 AA
50949846 TAATGTAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (27 bp):
AAGAATTCTTCATGTTAATACTTGATT
Found at i:50963878 original size:23 final size:25
Alignment explanation
Indices: 50963852--50963898 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
50963842 TATCATTCAT
*
50963852 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
50963875 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
50963899 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:50967162 original size:206 final size:206
Alignment explanation
Indices: 50966807--50967246 Score: 844
Period size: 206 Copynumber: 2.1 Consensus size: 206
50966797 GAAAAGACAA
50966807 ATTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGCTTACGCTAAAGA
1 ATTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGCTTACGCTAAAGA
50966872 AAGTATAAGATGATTTGACATCTTTATATTGTCAGAGAACAAGTCGAAATCTGGCATCTCCATTT
66 AAGTATAAGATGATTTGACATCTTTATATTGTCAGAGAACAAGTCGAAATCTGGCATCTCCATTT
50966937 CGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGAT
131 CGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGAT
50967002 AATTTGGCATC
196 AATTTGGCATC
*
50967013 CTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGCTTACGCTAAAGA
1 ATTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGCTTACGCTAAAGA
50967078 AAGTATAAGATGATTTGACATCTTTATATTGTCAGAGAACAAGTCGAAATCTGGCATCTCCATTT
66 AAGTATAAGATGATTTGACATCTTTATATTGTCAGAGAACAAGTCGAAATCTGGCATCTCCATTT
*
50967143 CGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGTAAGATCCAAGAT
131 CGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGAT
*
50967208 GATTTGGCATC
196 AATTTGGCATC
*
50967219 ATTGTGCTTACAAGGAACAAATCGAAGA
1 ATTGTGCTTACAAGGAGCAAATCGAAGA
50967247 AGCAGATTTG
Statistics
Matches: 229, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
206 229 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (206 bp):
ATTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGCTTACGCTAAAGA
AAGTATAAGATGATTTGACATCTTTATATTGTCAGAGAACAAGTCGAAATCTGGCATCTCCATTT
CGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGAT
AATTTGGCATC
Found at i:50967430 original size:45 final size:46
Alignment explanation
Indices: 50967334--50967430 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 46
50967324 AAATTGACAA
* **
50967334 AGCAAATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCGGAGATT
1 AGCAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCAAAGATT
* *
50967380 A-CAGATTTGGCGTCTCTGTATTAGACGGGTAGCAGATCAAAGA-T
1 AGCAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCAAAGATT
50967424 AGCAGAT
1 AGCAGAT
50967431 ATCGCTTTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
44 2 0.04
45 42 0.93
46 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (46 bp):
AGCAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCAAAGATT
Found at i:50967642 original size:15 final size:15
Alignment explanation
Indices: 50967615--50967660 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
50967605 ATTTTGCCCT
50967615 GCTAAAAAGCCCAACA
1 GCTAAAAA-CCCAACA
*
50967631 TCTAAAAACCCAACA
1 GCTAAAAACCCAACA
**
50967646 GCCCAAAACCCAACA
1 GCTAAAAACCCAACA
50967661 ACCTTCAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.50, C:0.37, G:0.07, T:0.07
Consensus pattern (15 bp):
GCTAAAAACCCAACA
Found at i:50967760 original size:13 final size:13
Alignment explanation
Indices: 50967742--50967799 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 13
50967732 TCTTCACTCC
50967742 AACCACCCCACTA
1 AACCACCCCACTA
*
50967755 AACCACTCCACTA
1 AACCACCCCACTA
*
50967768 AACCA---CTCT-
1 AACCACCCCACTA
50967777 AACCACCCCACTA
1 AACCACCCCACTA
*
50967790 AACCATCCCA
1 AACCACCCCA
50967800 ACCACTCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 5 0.14
10 3 0.08
12 3 0.08
13 26 0.70
ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:50967780 original size:22 final size:22
Alignment explanation
Indices: 50967755--50967810 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
50967745 CACCCCACTA
*
50967755 AACCACTCCACTAAACCA-CTCT
1 AACCACTCCACTAAACCATC-CC
*
50967777 AACCACCCCACTAAACCATCCC
1 AACCACTCCACTAAACCATCCC
50967799 AACCACTCCACT
1 AACCACTCCACT
50967811 TGCCGACAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 29 0.97
23 1 0.03
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (22 bp):
AACCACTCCACTAAACCATCCC
Found at i:50968209 original size:19 final size:18
Alignment explanation
Indices: 50968172--50968213 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
50968162 GGAGAGAGTG
*
50968172 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
50968190 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
50968209 TTATT
1 TTATT
50968214 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:50971185 original size:22 final size:23
Alignment explanation
Indices: 50971160--50971222 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 23
50971150 TCTCTTTTAA
50971160 TTAATTAAT-TAA-AAATATATTT
1 TTAATTAATATAATAAA-ATATTT
*
50971182 TTAATTGATATAATAAAATA--T
1 TTAATTAATATAATAAAATATTT
50971203 TT-A--AATATAATAAAATATTT
1 TTAATTAATATAATAAAATATTT
50971223 ACTTTTCAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
18 13 0.37
20 2 0.06
21 3 0.09
22 8 0.23
23 6 0.17
24 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
TTAATTAATATAATAAAATATTT
Found at i:50971212 original size:18 final size:18
Alignment explanation
Indices: 50971189--50971223 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
50971179 TTTTTAATTG
50971189 ATATAATAAAATATTTAA
1 ATATAATAAAATATTTAA
50971207 ATATAATAAAATATTTA
1 ATATAATAAAATATTTA
50971224 CTTTTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATAATAAAATATTTAA
Found at i:50973770 original size:26 final size:26
Alignment explanation
Indices: 50973734--50973820 Score: 84
Period size: 26 Copynumber: 3.2 Consensus size: 26
50973724 ACCAACATCC
*
50973734 AATTGAATGTTTGTTATTATATTTTT
1 AATTTAATGTTTGTTATTATATTTTT
* * * *
50973760 AATTTAGTGTTACTATTAATATTGTTTTT
1 AATTTAATGTT--TGTTATTA-TATTTTT
* *
50973789 AATGTAATATTTGTTATTATATTTTT
1 AATTTAATGTTTGTTATTATATTTTT
50973815 AATTTA
1 AATTTA
50973821 TTAATTGAAA
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
26 20 0.43
27 6 0.13
28 6 0.13
29 14 0.30
ACGTcount: A:0.30, C:0.01, G:0.09, T:0.60
Consensus pattern (26 bp):
AATTTAATGTTTGTTATTATATTTTT
Found at i:50974158 original size:17 final size:15
Alignment explanation
Indices: 50974119--50974175 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
50974109 TAAAGTCAAC
50974119 ACTTAATTTTTTTAAT
1 ACTT-ATTTTTTTAAT
50974135 ACTTATTTTTTTAAT
1 ACTTATTTTTTTAAT
* * * *
50974150 ATTTATATTTTCAAC
1 ACTTATTTTTTTAAT
*
50974165 ACTGATTTTTT
1 ACTTATTTTTT
50974176 CATTTTTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.61
Consensus pattern (15 bp):
ACTTATTTTTTTAAT
Found at i:50984105 original size:24 final size:24
Alignment explanation
Indices: 50984060--50984105 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
50984050 TATATGAAAT
* * *
50984060 ATAAATTTTAAATATTTTTAAACA
1 ATAAATATTAAATACTTATAAACA
*
50984084 ATAAATATTAATTACTTATAAA
1 ATAAATATTAAATACTTATAAA
50984106 TTTTAATTAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
ATAAATATTAAATACTTATAAACA
Found at i:50985255 original size:41 final size:41
Alignment explanation
Indices: 50985176--50985395 Score: 327
Period size: 41 Copynumber: 5.4 Consensus size: 41
50985166 CGTTTTTTAC
* * **
50985176 TAAAATGCCGCTAAAAA-TAGAGAATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
* *
50985216 TAAAACGCCGCTAAAAACCATATCATTAGCGGCGCTTTAGT
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
50985257 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTT-GG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
*
50985297 TTAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTGGG
1 -TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
* * *
50985339 TAAAACGCCGCTAAAAACCAGACCATTAGTGGCGCTTTGGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
50985380 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
50985396 GTCATAAACC
Statistics
Matches: 167, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
40 17 0.10
41 148 0.89
42 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
Found at i:50985822 original size:25 final size:25
Alignment explanation
Indices: 50985793--50985844 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
50985783 GTGATTTTGA
50985793 ATGTGGAATTAGCATTTGTTGAACT
1 ATGTGGAATTAGCATTTGTTGAACT
*
50985818 ATGTGGAATTAGCATTTGTTTAACT
1 ATGTGGAATTAGCATTTGTTGAACT
50985843 AT
1 AT
50985845 TAGCTAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (25 bp):
ATGTGGAATTAGCATTTGTTGAACT
Found at i:50988132 original size:43 final size:44
Alignment explanation
Indices: 50988063--50988278 Score: 287
Period size: 43 Copynumber: 5.0 Consensus size: 44
50988053 CTGGGCAAAT
* *
50988063 TAGCGGCGTTTTTTTGCAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTA
* * *
50988107 TAGCGGCG-TTTTTTACAGAAGCGCCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTAC-AGGTCTA
*
50988150 TAGCGGCGCTTTTTTACAAAAGCGTCGCTAAAAGTACAGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTA
* * * *
50988194 TAGCGGCG-TTTTTTACAGAAGCACCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTAC-AGGTCTA
*
50988237 TAGCGGCGCTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTC
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTC
50988279 CTGGTCTTTG
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
42 12 0.08
43 63 0.43
44 61 0.41
45 12 0.08
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (44 bp):
TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTA
Found at i:50988209 original size:87 final size:87
Alignment explanation
Indices: 50988063--50988278 Score: 387
Period size: 87 Copynumber: 2.5 Consensus size: 87
50988053 CTGGGCAAAT
* *
50988063 TAGCGGCGTTTTTTTGCAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
*
50988128 CGCCGCTAAAGTTCTTGGTCTA
66 CACCGCTAAAGTTCTTGGTCTA
*
50988150 TAGCGGCGCTTTTTTACAAAAGCGTCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
50988215 CACCGCTAAAGTTCTTGGTCTA
66 CACCGCTAAAGTTCTTGGTCTA
*
50988237 TAGCGGCGCTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTC
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTC
50988279 CTGGTCTTTG
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 123 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (87 bp):
TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
CACCGCTAAAGTTCTTGGTCTA
Found at i:50989203 original size:25 final size:23
Alignment explanation
Indices: 50989174--50989219 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
50989164 AATAAAAAAT
*
50989174 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
50989199 TTTAAAACATAAAAATAAATA
1 TTTAAAACATAAAAATAAATA
50989220 TTAAACCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
25 11 0.55
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:50989345 original size:12 final size:12
Alignment explanation
Indices: 50989323--50989351 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
50989313 AAACTAAAAC
50989323 AAATT-AGAACT
1 AAATTAAGAACT
50989334 AAATTAAGAACT
1 AAATTAAGAACT
50989346 AAATTA
1 AAATTA
50989352 TATATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (12 bp):
AAATTAAGAACT
Found at i:50989457 original size:9 final size:10
Alignment explanation
Indices: 50989437--50989463 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
50989427 AAAGTTACTT
50989437 AAAATTTAAA
1 AAAATTTAAA
50989447 AAAATTTAAA
1 AAAATTTAAA
50989457 AAAATTT
1 AAAATTT
50989464 TAATATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:50991009 original size:42 final size:42
Alignment explanation
Indices: 50990962--50991075 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 42
50990952 CGTGTTTTAC
* ***
50990962 TTTCTGTTTAGCTCTTACTTTCTTCCGTTAAACT-TATACGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCCGTTAAACTCT-TACGAG
* * *
50991004 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCCGTTAAACTCTTACGAG
* *
50991046 TTTCTGTTCAGCTCTTGCGAGCTTCTGTTA
1 TTTCTGTTCAGCTCTTACGAGCTTCCGTTA
50991076 GCTTTCGAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 61 0.98
43 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.46
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACGAGCTTCCGTTAAACTCTTACGAG
Found at i:50991023 original size:21 final size:21
Alignment explanation
Indices: 50990998--50991092 Score: 124
Period size: 21 Copynumber: 4.7 Consensus size: 21
50990988 GTTAAACTTA
*
50990998 TACGAGTTTCTGTTCAGCTCT
1 TACGAGCTTCTGTTCAGCTCT
*
50991019 TACGAGCTTCTGTTCAACTCT
1 TACGAGCTTCTGTTCAGCTCT
* *
50991040 TATGAGTTTCTGTTCAGCTCT
1 TACGAGCTTCTGTTCAGCTCT
*
50991061 TGCGAGCTTCTGTT-AGCT-T
1 TACGAGCTTCTGTTCAGCTCT
50991080 T-CGAGCTTCTGTT
1 TACGAGCTTCTGTT
50991093 AACGTGTACT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
18 12 0.18
19 2 0.03
20 4 0.06
21 48 0.73
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (21 bp):
TACGAGCTTCTGTTCAGCTCT
Found at i:50993180 original size:13 final size:14
Alignment explanation
Indices: 50993159--50993187 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
50993149 TGAAAAATAG
50993159 ATTAGAAAATATTT
1 ATTAGAAAATATTT
50993173 ATTA-AAAATATTT
1 ATTAGAAAATATTT
50993186 AT
1 AT
50993188 AAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:50994200 original size:19 final size:19
Alignment explanation
Indices: 50994159--50994200 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
50994149 ATATACCTTT
*
50994159 TTATATATAGTATCATTTT
1 TTATATATAGTATCATTTA
*
50994178 TTATATATCATTAT-ATTTA
1 TTATATAT-AGTATCATTTA
50994197 TTAT
1 TTAT
50994201 CGTACTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (19 bp):
TTATATATAGTATCATTTA
Found at i:50996758 original size:29 final size:29
Alignment explanation
Indices: 50996724--50996781 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
50996714 CAAAAAACTT
*
50996724 ATATATATAATTATCATTTTTTAATTTTTTG
1 ATAT-TATAATAATCATTTTTT-ATTTTTTG
* *
50996755 ATATTATTATAATTATTTTTTATTTTT
1 ATATTATAATAATCATTTTTTATTTTT
50996782 ATCTAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 6 0.25
30 14 0.58
31 4 0.17
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (29 bp):
ATATTATAATAATCATTTTTTATTTTTTG
Found at i:50997325 original size:24 final size:25
Alignment explanation
Indices: 50997294--50997365 Score: 130
Period size: 24 Copynumber: 3.0 Consensus size: 25
50997284 CCCTCCCAAA
50997294 AAAAAACCTAA-CCAAAAAAAAAAG
1 AAAAAACCTAACCCAAAAAAAAAAG
50997318 AAAAAACCTAACCCAAAAAAAAAAG
1 AAAAAACCTAACCCAAAAAAAAAAG
50997343 -AAAAACCTAACCCAAAAAAAAAA
1 AAAAAACCTAACCCAAAAAAAAAA
50997366 CCAAGAAACC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
24 34 0.72
25 13 0.28
ACGTcount: A:0.74, C:0.19, G:0.03, T:0.04
Consensus pattern (25 bp):
AAAAAACCTAACCCAAAAAAAAAAG
Found at i:51009853 original size:18 final size:18
Alignment explanation
Indices: 51009830--51009897 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
51009820 GCCCTCCCCC
51009830 AAAAAAAAACCTAACCAA
1 AAAAAAAAACCTAACCAA
**
51009848 AAAAAAAAA-AGAA--AA
1 AAAAAAAAACCTAACCAA
*
51009863 AAGAAAAAAACCTAACCCA
1 AA-AAAAAAACCTAACCAA
51009882 AAAAAAAAACCTAACC
1 AAAAAAAAACCTAACC
51009898 CCCCCCCAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
15 4 0.10
16 7 0.17
17 4 0.10
18 23 0.56
19 3 0.07
ACGTcount: A:0.74, C:0.19, G:0.03, T:0.04
Consensus pattern (18 bp):
AAAAAAAAACCTAACCAA
Found at i:51009898 original size:18 final size:17
Alignment explanation
Indices: 51009830--51009897 Score: 75
Period size: 17 Copynumber: 3.9 Consensus size: 17
51009820 GCCCTCCCCC
51009830 AAAAAAAAACCTAACCA
1 AAAAAAAAACCTAACCA
*** *
51009847 AAAAAAAAAAAGAA-AA
1 AAAAAAAAACCTAACCA
51009863 AAGAAAAAAACCTAACCCA
1 AA-AAAAAAACCTAA-CCA
51009882 AAAAAAAAACCTAACC
1 AAAAAAAAACCTAACC
51009898 CCCCCCCAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
16 3 0.08
17 22 0.55
18 12 0.30
19 3 0.08
ACGTcount: A:0.74, C:0.19, G:0.03, T:0.04
Consensus pattern (17 bp):
AAAAAAAAACCTAACCA
Found at i:51011505 original size:12 final size:12
Alignment explanation
Indices: 51011481--51011519 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
51011471 TAAAAATATC
51011481 ATAAACAAA-CAA
1 ATAAA-AAATCAA
51011493 ATAAAAAATCAA
1 ATAAAAAATCAA
51011505 ATAAAAAATCAA
1 ATAAAAAATCAA
51011517 ATA
1 ATA
51011520 TTCTCCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.15
Consensus pattern (12 bp):
ATAAAAAATCAA
Found at i:51014657 original size:37 final size:37
Alignment explanation
Indices: 51014616--51014697 Score: 87
Period size: 37 Copynumber: 2.2 Consensus size: 37
51014606 TATTAAACTA
51014616 TAATTATAAAAATA-AATTTT-AATTTTTATAATATTTT
1 TAATTATAAAAATATAATTTTCAATTTTTA-AA-ATTTT
* * * *
51014653 TAATTTTATACATATTATTTTCAATTTTTAAAATTTT
1 TAATTATAAAAATATAATTTTCAATTTTTAAAATTTT
*
51014690 AAATTATA
1 TAATTATA
51014698 CTTTTCAGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
37 22 0.59
38 7 0.19
39 8 0.22
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (37 bp):
TAATTATAAAAATATAATTTTCAATTTTTAAAATTTT
Found at i:51014659 original size:17 final size:19
Alignment explanation
Indices: 51014632--51014682 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 19
51014622 TAAAAATAAA
51014632 TTTTAATTTTTATA-ATAT
1 TTTTAATTTTTATACATAT
51014650 TTTTAA-TTTTATACATATT
1 TTTTAATTTTTATACATA-T
51014669 ATTTTCAATTTTTA
1 -TTTT-AATTTTTA
51014683 AAATTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 7 0.25
18 9 0.32
19 1 0.04
20 4 0.14
21 2 0.07
22 5 0.18
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTAATTTTTATACATAT
Found at i:51014673 original size:21 final size:18
Alignment explanation
Indices: 51014632--51014694 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 18
51014622 TAAAAATAAA
51014632 TTTTAATTTTTATAATAT
1 TTTTAATTTTTATAATAT
51014650 TTTTAA-TTTTATACATATT
1 TTTTAATTTTTATA-ATA-T
51014669 ATTTTCAATTTTTA-AA-AT
1 -TTTT-AATTTTTATAATAT
*
51014687 TTTAAATT
1 TTTTAATT
51014695 ATACTTTTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
16 4 0.10
17 10 0.26
18 10 0.26
19 2 0.05
20 5 0.13
21 3 0.08
22 5 0.13
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAATTTTTATAATAT
Found at i:51014846 original size:21 final size:21
Alignment explanation
Indices: 51014800--51014847 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
51014790 ATCAACGCTT
* *
51014800 AGTCAACATTGATTAACAGTT
1 AGTCAACATTGATTAACAATC
* *
51014821 GGTCAACATTGATTAATAATC
1 AGTCAACATTGATTAACAATC
51014842 AGTCAA
1 AGTCAA
51014848 AGTTAATTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (21 bp):
AGTCAACATTGATTAACAATC
Found at i:51024054 original size:23 final size:23
Alignment explanation
Indices: 51024028--51024076 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
51024018 TATCAAATGC
* *
51024028 TTTTTTTTATAA-AAAAACAATA
1 TTTTTTTTAAAATAAAAAAAATA
51024050 TTTTTTTTAAAATAAAAAAAATA
1 TTTTTTTTAAAATAAAAAAAATA
51024073 TTTT
1 TTTT
51024077 CATATATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTTTTTTAAAATAAAAAAAATA
Found at i:51025423 original size:12 final size:12
Alignment explanation
Indices: 51025406--51025438 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
51025396 CCTATATTGA
51025406 AATTATAATAAT
1 AATTATAATAAT
51025418 AATTATAATAAT
1 AATTATAATAAT
*
51025430 AATAATAAT
1 AATTATAAT
51025439 GAATTCTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AATTATAATAAT
Found at i:51026932 original size:20 final size:20
Alignment explanation
Indices: 51026909--51026948 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51026899 AAAAACCATT
51026909 GAAAAA-AAAGAAGAGATGAA
1 GAAAAATAAA-AAGAGATGAA
*
51026929 GAAAAATAAAAGGAGATGAA
1 GAAAAATAAAAAGAGATGAA
51026949 TAGTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (20 bp):
GAAAAATAAAAAGAGATGAA
Found at i:51028077 original size:17 final size:19
Alignment explanation
Indices: 51028050--51028107 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 19
51028040 TAAAGTGATA
51028050 AACACTTTAATATTAAATT
1 AACACTTTAATATTAAATT
51028069 AA-A-TTTAATATTAAGA-T
1 AACACTTTAATATTAA-ATT
51028086 AATCACTTTAATATTAAATT
1 AA-CACTTTAATATTAAATT
51028106 AA
1 AA
51028108 TAAAATACTA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 14 0.41
18 2 0.06
19 4 0.12
20 14 0.41
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (19 bp):
AACACTTTAATATTAAATT
Found at i:51028108 original size:20 final size:20
Alignment explanation
Indices: 51028052--51028108 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
51028042 AAGTGATAAA
51028052 CACTTTAATATTAAATTAA-
1 CACTTTAATATTAAATTAAT
51028071 -A-TTTAATATTAAGA-TAAT
1 CACTTTAATATTAA-ATTAAT
51028089 CACTTTAATATTAAATTAAT
1 CACTTTAATATTAAATTAAT
51028109 AAAATACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 14 0.42
18 2 0.06
19 2 0.06
20 15 0.45
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (20 bp):
CACTTTAATATTAAATTAAT
Found at i:51028150 original size:17 final size:17
Alignment explanation
Indices: 51028058--51028153 Score: 58
Period size: 17 Copynumber: 5.6 Consensus size: 17
51028048 TAAACACTTT
*
51028058 AATATTAAATTAAATTT
1 AATATTAAATTAAATTA
*
51028075 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAA--A-TTA
*
51028095 AATATTAAATT-AATAA
1 AATATTAAATTAAATTA
* *
51028111 AATACT--ATCAAGA-TA
1 AATATTAAATTAA-ATTA
*
51028126 AGTATTAAATTAAATTA
1 AATATTAAATTAAATTA
51028143 AATATTAAATT
1 AATATTAAATT
51028154 TGTTAAAATA
Statistics
Matches: 60, Mismatches: 9, Indels: 20
0.67 0.10 0.22
Matches are distributed among these distances:
14 2 0.03
15 6 0.10
16 8 0.13
17 28 0.47
18 1 0.02
19 3 0.05
20 12 0.20
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Done.