Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 170 of 185
Found at i:51032556 original size:20 final size:20
Alignment explanation
Indices: 51032531--51032580 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
51032521 TAATTATTTG
*
51032531 TAAAATTTAATTTAAATATA
1 TAAAATATAATTTAAATATA
*
51032551 TAAAATATATTTTAAATAT-
1 TAAAATATAATTTAAATATA
*
51032570 CAAAATATAAT
1 TAAAATATAAT
51032581 CCTTACCAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAATATAATTTAAATATA
Found at i:51033623 original size:11 final size:12
Alignment explanation
Indices: 51033587--51033616 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
51033577 CTATCGGACT
*
51033587 AAAAATAACTAA
1 AAAAATAATTAA
51033599 AAAAATAATTAA
1 AAAAATAATTAA
51033611 AAAAAT
1 AAAAAT
51033617 CATAAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAAATAATTAA
Found at i:51043646 original size:67 final size:67
Alignment explanation
Indices: 51043553--51043681 Score: 258
Period size: 67 Copynumber: 1.9 Consensus size: 67
51043543 TTAGGTCAAA
51043553 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAATGA
1 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAATGA
51043618 CC
66 CC
51043620 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAA
1 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAA
51043682 GCTAGATGAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.64, C:0.06, G:0.09, T:0.21
Consensus pattern (67 bp):
TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAATGA
CC
Found at i:51043873 original size:26 final size:27
Alignment explanation
Indices: 51043844--51043894 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
51043834 AAAGATTGTT
51043844 AAAATTCTTTAAAAG-AAAACTCAAGA
1 AAAATTCTTTAAAAGAAAAACTCAAGA
*
51043870 AAAATTTTTTAAAAGAAAAACTCAA
1 AAAATTCTTTAAAAGAAAAACTCAA
51043895 AGAGAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.25
Consensus pattern (27 bp):
AAAATTCTTTAAAAGAAAAACTCAAGA
Found at i:51043908 original size:27 final size:26
Alignment explanation
Indices: 51043844--51043908 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
51043834 AAAGATTGTT
51043844 AAAATTCT-TTAAAAGAAAACTCAAGA
1 AAAATT-TATTAAAAGAAAACTCAAGA
*
51043870 AAAATTTTTTAAAAGAAAAACTCAA-A
1 AAAATTTATTAAAAG-AAAACTCAAGA
*
51043896 GAGAATTTATTAA
1 -AAAATTTATTAA
51043909 CTTCAAAGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 1 0.03
26 14 0.41
27 19 0.56
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.28
Consensus pattern (26 bp):
AAAATTTATTAAAAGAAAACTCAAGA
Found at i:51047924 original size:26 final size:26
Alignment explanation
Indices: 51047895--51048028 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
51047885 TGATACAAAT
51047895 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51047921 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
51047947 TTATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51047973 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51047999 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51048025 TGAT
1 TGAT
51048029 GGGAATTTCA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 100 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51048845 original size:8 final size:8
Alignment explanation
Indices: 51048832--51048861 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
51048822 AGATCGGCAC
51048832 AAGCCGAA
1 AAGCCGAA
51048840 AAGCCGAA
1 AAGCCGAA
*
51048848 ATGCCGAA
1 AAGCCGAA
51048856 AAGCCG
1 AAGCCG
51048862 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:51049293 original size:27 final size:27
Alignment explanation
Indices: 51049255--51049333 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 27
51049245 AGCGTCCTGG
51049255 TGGCTATGCCACAATTATCTGATCTGA
1 TGGCTATGCCACAATTATCTGATCTGA
* *
51049282 TGGCTCTGCCAC-ATATATCTG-TCCTGG
1 TGGCTATGCCACAAT-TATCTGAT-CTGA
51049309 TGGCTATGCCACAATTATCTGATCT
1 TGGCTATGCCACAATTATCTGATCT
51049334 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
26 3 0.07
27 39 0.87
28 3 0.07
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
TGGCTATGCCACAATTATCTGATCTGA
Found at i:51051810 original size:39 final size:39
Alignment explanation
Indices: 51051748--51051904 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
51051738 ATGCAAGACA
*
51051748 CTGGAAATGTAT-CAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
51051786 CTAGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
51051825 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
51051864 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
51051903 CT
1 CT
51051905 TGTAATATAA
Statistics
Matches: 110, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 11 0.10
39 99 0.90
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:51052130 original size:61 final size:61
Alignment explanation
Indices: 51052055--51052177 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
51052045 AATTTGTGAA
*
51052055 ATTGTGAAATTAGTGAATTAAAAGAATTTTTTTGGTCAAACGGGTCAAAAATGAGGTATCG
1 ATTGTGAAATTAGTGAATTAAAAGAATTTTTTTGGTCAAACGGGTCAAAAACGAGGTATCG
51052116 ATTGTGAAATTAGTGAATTAAAAGAATTTTTTTGGTCAAACGGGTCAAAAACGAGGTATCG
1 ATTGTGAAATTAGTGAATTAAAAGAATTTTTTTGGTCAAACGGGTCAAAAACGAGGTATCG
51052177 A
1 A
51052178 GACCTCGAAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (61 bp):
ATTGTGAAATTAGTGAATTAAAAGAATTTTTTTGGTCAAACGGGTCAAAAACGAGGTATCG
Found at i:51056350 original size:29 final size:28
Alignment explanation
Indices: 51056316--51056422 Score: 124
Period size: 29 Copynumber: 3.8 Consensus size: 28
51056306 CCGAGCATTT
51056316 TGTGTGCGAGATCGGTTGTTGAAGCACTG
1 TGTGTGCGAGATCGGTTGTTG-AGCACTG
*
51056345 TGTGTGCGAGATCGATTGTTGAGACACTG
1 TGTGTGCGAGATCGGTTGTTGAG-CACTG
* * ****
51056374 TGTGTGCGAGTTCTGTAACCGAGCACTG
1 TGTGTGCGAGATCGGTTGTTGAGCACTG
*
51056402 TGTGTGCAAGATCGGTTGTTG
1 TGTGTGCGAGATCGGTTGTTG
51056423 GGGCACTAAG
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 21 0.34
29 41 0.66
ACGTcount: A:0.18, C:0.15, G:0.36, T:0.32
Consensus pattern (28 bp):
TGTGTGCGAGATCGGTTGTTGAGCACTG
Found at i:51059882 original size:3 final size:3
Alignment explanation
Indices: 51059876--51059911 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
51059866 ACACTACTAT
51059876 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51059912 TAGAAATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:51060579 original size:16 final size:16
Alignment explanation
Indices: 51060560--51060590 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51060550 TGCTGTTTTG
51060560 GGTGTTGAGTGTTGGT
1 GGTGTTGAGTGTTGGT
51060576 GGTGTTGAGTGTTGG
1 GGTGTTGAGTGTTGG
51060591 CCCCAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.00, G:0.52, T:0.42
Consensus pattern (16 bp):
GGTGTTGAGTGTTGGT
Found at i:51062429 original size:39 final size:39
Alignment explanation
Indices: 51062386--51062466 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
51062376 ATGCAAGATA
51062386 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
51062425 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
51062464 CTG
1 CTG
51062467 ATAATATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:51065323 original size:20 final size:20
Alignment explanation
Indices: 51065298--51065339 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51065288 AAAATAGACA
51065298 TATTTGAATCATACTGCATG
1 TATTTGAATCATACTGCATG
51065318 TATTTGAATCATACTGCATG
1 TATTTGAATCATACTGCATG
51065338 TA
1 TA
51065340 ATTTCCATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
TATTTGAATCATACTGCATG
Found at i:51066012 original size:34 final size:35
Alignment explanation
Indices: 51065943--51066012 Score: 106
Period size: 34 Copynumber: 2.0 Consensus size: 35
51065933 AAAGATTTCA
*
51065943 AGAAATCAATAAATTTCATGTACACTTCCGCATTT
1 AGAAATCAATAAATTTCAGGTACACTTCCGCATTT
* *
51065978 AGAAATCAATAAA-TTCAGGTACACTTTCGTATTT
1 AGAAATCAATAAATTTCAGGTACACTTCCGCATTT
51066012 A
1 A
51066013 TATTTATTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 19 0.59
35 13 0.41
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (35 bp):
AGAAATCAATAAATTTCAGGTACACTTCCGCATTT
Found at i:51067002 original size:14 final size:14
Alignment explanation
Indices: 51066983--51067009 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51066973 TTTGTGTGTT
51066983 CTTTATTTTATTTA
1 CTTTATTTTATTTA
51066997 CTTTATTTTATTT
1 CTTTATTTTATTT
51067010 TATTTTTCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (14 bp):
CTTTATTTTATTTA
Found at i:51071949 original size:32 final size:30
Alignment explanation
Indices: 51071909--51071967 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
51071899 ATATTAATAT
*
51071909 AAAAATTTAAATTTTTATTATATTTTTTTTG
1 AAAAATTTAAATATTTA-TATATTTTTTTTG
**
51071940 AAAATATTTATGTATTTATATATTTTTT
1 AAAA-ATTTAAATATTTATATATTTTTT
51071968 AAATTTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 14 0.58
32 10 0.42
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (30 bp):
AAAAATTTAAATATTTATATATTTTTTTTG
Found at i:51075850 original size:55 final size:54
Alignment explanation
Indices: 51075763--51075870 Score: 135
Period size: 55 Copynumber: 2.0 Consensus size: 54
51075753 TAGACATGTT
* * ** * *
51075763 ACATAACAATTAATTTAAATATATGAATAATCGATTCAAAAGAAGTAATATTTTA
1 ACATAACAATCAATTTAAACATAAAAACAATCGATCCAAAAGAAG-AATATTTTA
* *
51075818 ACATGACAATCAATTTAAACATAAAAACAATCGATCCAAAAGAAGCATATTTT
1 ACATAACAATCAATTTAAACATAAAAACAATCGATCCAAAAGAAGAATATTTT
51075871 TGAAAAATTA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
54 7 0.16
55 38 0.84
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (54 bp):
ACATAACAATCAATTTAAACATAAAAACAATCGATCCAAAAGAAGAATATTTTA
Found at i:51078532 original size:6 final size:6
Alignment explanation
Indices: 51078521--51078545 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51078511 TCTCACTCTG
51078521 CATCTT CATCTT CATCTT CATCTT C
1 CATCTT CATCTT CATCTT CATCTT C
51078546 CACAACGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.36, G:0.00, T:0.48
Consensus pattern (6 bp):
CATCTT
Found at i:51079807 original size:21 final size:21
Alignment explanation
Indices: 51079783--51079822 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51079773 TTATTCAGTT
*
51079783 TTAAAGTATATGATT-TTAGCC
1 TTAAAATATAT-ATTATTAGCC
51079804 TTAAAATATATATTATTAG
1 TTAAAATATATATTATTAG
51079823 ATAAGATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (21 bp):
TTAAAATATATATTATTAGCC
Found at i:51081238 original size:26 final size:26
Alignment explanation
Indices: 51081202--51081251 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
51081192 AAGGGTGTGG
51081202 ATTTGGGTGTAATTGCTTGGAATTGA
1 ATTTGGGTGTAATTGCTTGGAATTGA
* *
51081228 ATTTGGGTGTAATTGTTTGTAATT
1 ATTTGGGTGTAATTGCTTGGAATT
51081252 ACACAAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.02, G:0.28, T:0.48
Consensus pattern (26 bp):
ATTTGGGTGTAATTGCTTGGAATTGA
Found at i:51086180 original size:3 final size:3
Alignment explanation
Indices: 51086166--51086518 Score: 81
Period size: 3 Copynumber: 116.0 Consensus size: 3
51086156 AATAGTACTT
* * *
51086166 TTA TTA TT- TTA TTA TTA TTT TTA CCTTT TTA TTA CTA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA TTA TT-A
* * * * * *
51086213 CTTA CTA TTA TTA GTT- TTA TTA ATA -TA GTA TTA TT- TTC TTT TTT
1 -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
51086257 TTA -TA TTG TTA TTA TTA TTA GCA -CA TATA TTA TTA TTA TTAA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT-A T-TA
* * * * *
51086303 TCA TTG TTA TTT TCTA TT- TTA TTA TTA CTT- TTA TTA CTA TTG TT-
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* *
51086347 TCTA TTA TTA TTA TT- TTCA TTA CTTCCA TTA TTA TTA TCA TTA TTT
1 T-TA TTA TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA
* * * *
51086393 TCTA TTA TCA TTA ATA TGTCG TT- TGT- TTA TTA TTA TTA TTA TTT TTA
1 T-TA TTA TTA TTA TTA T-T-A TTA T-TA TTA TTA TTA TTA TTA TTA TTA
** * * * * * * **
51086440 ACA CTG TTA TCA TCA TTA -TA TTTA CTT- TTC TTA ATA TTA TTA CCA
1 TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA
* *
51086485 TTA -TA TT- TTA TTA TTA TTA CTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51086519 CCTGTCCTAT
Statistics
Matches: 257, Mismatches: 58, Indels: 70
0.67 0.15 0.18
Matches are distributed among these distances:
2 29 0.11
3 192 0.75
4 27 0.11
5 8 0.03
6 1 0.00
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:51086502 original size:22 final size:21
Alignment explanation
Indices: 51086474--51086518 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
51086464 CTTTTCTTAA
51086474 TATTATTACCATTATATTTTAT
1 TATTATTACCATTAT-TTTTAT
*
51086496 TATTATTACTATTATTTTTAT
1 TATTATTACCATTATTTTTAT
51086517 TA
1 TA
51086519 CCTGTCCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTATTACCATTATTTTTAT
Found at i:51086949 original size:127 final size:127
Alignment explanation
Indices: 51086681--51087061 Score: 563
Period size: 127 Copynumber: 3.0 Consensus size: 127
51086671 ATTTTTCAAG
* * * * * * * ** * *
51086681 TAAAGGCAATATTCGGTACTTGGAAATTTGAGAAATCGTATCCTAACGTACTGGGTTTCGATTTT
1 TAAAGACAATATTCCGTATTTAGAAATTCGAGTAGTCGTGCCCTGACGTACTGGGTTTTGATTTT
* * * *
51086746 -TCGTTTGATCTAAGTAAC-CAATTATCC-TTTT-AAATTAAAATACATGAGTTTTAAATAAAA
66 CT-GTTTGATCTAAATATCTGAA-TATCCTTTTTAAAATTTAAATACATGAGTTTTAAATAAAA
51086806 TAAAGACAATATTCCGTATTTAGAAATTCGAGTAGTCGTGCCCTGACGTACTGGGTTTTGATTTT
1 TAAAGACAATATTCCGTATTTAGAAATTCGAGTAGTCGTGCCCTGACGTACTGGGTTTTGATTTT
51086871 CTGTTTGATCTAAATATCTGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATAAAA
66 CTGTTTGATCTAAATATCTGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATAAAA
51086933 TAAAGACAATATTCCGTATTTAGAAATTCGAGTAGTCGTGCCCTGACGTACTGGGTTTTGATTTT
1 TAAAGACAATATTCCGTATTTAGAAATTCGAGTAGTCGTGCCCTGACGTACTGGGTTTTGATTTT
* *
51086998 CTGTTTGATCTAAATATCTGAATATCCTTTTTAAAATTTAAATACATGGGTTTTAAATGAAA
66 CTGTTTGATCTAAATATCTGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATAAAA
51087060 TA
1 TA
51087062 GAAGGCAAGC
Statistics
Matches: 235, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
125 73 0.31
126 7 0.03
127 155 0.66
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (127 bp):
TAAAGACAATATTCCGTATTTAGAAATTCGAGTAGTCGTGCCCTGACGTACTGGGTTTTGATTTT
CTGTTTGATCTAAATATCTGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATAAAA
Found at i:51088021 original size:18 final size:17
Alignment explanation
Indices: 51087986--51088029 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
51087976 TCTTAGAAAT
*
51087986 TATTTTTATCATACTAA
1 TATTTTTATAATACTAA
*
51088003 TATTTTTATAATATTTAA
1 TATTTTTATAATA-CTAA
51088021 TAGTTTTTA
1 TA-TTTTTA
51088030 AAAATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (17 bp):
TATTTTTATAATACTAA
Found at i:51090092 original size:20 final size:20
Alignment explanation
Indices: 51090067--51090113 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
51090057 TTAAACACTA
51090067 AAAAATATTAATTATTTTAT
1 AAAAATATTAATTATTTTAT
*
51090087 AAAAATA--AATTATTTTCT
1 AAAAATATTAATTATTTTAT
*
51090105 AAAACTATT
1 AAAAATATT
51090114 TTCAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 16 0.70
20 7 0.30
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAAATATTAATTATTTTAT
Found at i:51096499 original size:69 final size:70
Alignment explanation
Indices: 51096419--51096552 Score: 191
Period size: 69 Copynumber: 1.9 Consensus size: 70
51096409 TTGTGATGTG
** *
51096419 TGAGCGATCATTAAAG-ATGTCTTTTATTACAATAAAA-AAATATTAACTAATAAAATTCGTTAA
1 TGAGCGATCATTAAAGAAAAT-TTTTATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAA
51096482 TGACGT
65 TGACGT
* * *
51096488 TGAGCGGTCATTAAAGAAAATTTTTATTACACCAAAAGAAATATTAACTAATAAAATTTGTTAAT
1 TGAGCGATCATTAAAGAAAATTTTTATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAAT
51096553 TCATTAATGA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
69 29 0.51
70 28 0.49
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (70 bp):
TGAGCGATCATTAAAGAAAATTTTTATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAAT
GACGT
Found at i:51097316 original size:22 final size:22
Alignment explanation
Indices: 51097286--51097335 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
51097276 AGAGAATATA
51097286 ACTGACGAAGTACACATATTCAG
1 ACTG-CGAAGTACACATATTCAG
*
51097309 ACTGCGAAGTATACATATTCAG
1 ACTGCGAAGTACACATATTCAG
51097331 ACTGC
1 ACTGC
51097336 ATTTGGAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (22 bp):
ACTGCGAAGTACACATATTCAG
Found at i:51100919 original size:156 final size:156
Alignment explanation
Indices: 51100449--51101192 Score: 987
Period size: 156 Copynumber: 4.8 Consensus size: 156
51100439 GATCGTTCAT
* ** *
51100449 ACGTCACTAAAG-AATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAATTTTTTT
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAAAATTTCT
* *
51100513 TTAATGATCGCTTAACGTCAGTAACGAAATTAACGAATTTTATTAGTTAATACTTTTTATTATAA
66 TTAATGATCGCTAAACGTCACTAACGAAATTAACGAATTTTATTAGTTAATACTTTTTATTATAA
*
51100578 TAAAAGACATCTTTAATAATCACTCA
131 TAAAAAACATCTTTAATAATCACTCA
* *
51100604 ACGTCACTAACAAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAAAATTGTT
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAAAATT-TC
*
51100669 TTTAATGATCGCTCAACGTCACTAACGAAATTAACGAATTTTATTAGTTAATACTTTTTATTATA
65 TTTAATGATCGCTAAACGTCACTAACGAAATTAACGAATTTTATTAGTTAATACTTTTTATTATA
51100734 ATAAAAAACATCTTTAATAATCACTCA
130 ATAAAAAACATCTTTAATAATCACTCA
51100761 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAAAATTTCT
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAAAATTTCT
* * * *
51100826 TTAATGATCGCTAAACATCACTAACGAAATTAACAAATTTTATTAGTAAATATTTTTTATTATAA
66 TTAATGATCGCTAAACGTCACTAACGAAATTAACGAATTTTATTAGTTAATACTTTTTATTATAA
* *
51100891 TAAAAGACATCTTTAATGATCACTCA
131 TAAAAAACATCTTTAATAATCACTCA
* * * **
51100917 ACGTCACTAACGAAATTGACAAATTTTATTAGTTAATATTT-TTTTATTGTAATA-AAAGACATC
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAAA-ATTTC
* * *
51100980 TTTAATGATCGCTCACACGTCACTAACGAAATTAACGAGTTTTATTAGTTAATATTCTCTTTATT
65 TTTAATGATCGCT-AAACGTCACTAACGAAATTAACGAATTTTATTAGTTAATA--CTTTTTATT
* * * *
51101045 GTAATAAAAAAAATTCTTTGATGATCACTCA
127 ATAATAAAAAACA-TCTTTAATAATCACTCA
* * * * * **
51101076 CACATCACTAACGAAATTAACGAATTTTATTGGTTATTGTTATC-TTTATTGTAATA-AAAAAAT
1 -ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATT-TCTTTTGTTGTAATAGAAAATTT
* * * * * * *
51101139 ATTTGATGATCGCTCACATGTCACTAA-AAAATTAACGAATTTTATCAATTAATA
64 CTTTAATGATCGCT-AAACGTCACTAACGAAATTAACGAATTTTATTAGTTAATA
51101193 TTCTCCTTAT
Statistics
Matches: 533, Mismatches: 46, Indels: 16
0.90 0.08 0.03
Matches are distributed among these distances:
154 3 0.01
155 38 0.07
156 207 0.39
157 152 0.29
158 17 0.03
159 39 0.07
160 61 0.11
161 16 0.03
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (156 bp):
ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAATAGAAAATTTCT
TTAATGATCGCTAAACGTCACTAACGAAATTAACGAATTTTATTAGTTAATACTTTTTATTATAA
TAAAAAACATCTTTAATAATCACTCA
Found at i:51101214 original size:79 final size:79
Alignment explanation
Indices: 51100437--51101239 Score: 874
Period size: 77 Copynumber: 10.2 Consensus size: 79
51100427 ACAATTTGTG
* * * *
51100437 ATGATCGTTCATACGTCACTAAAG-AATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAA
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTC-TTTATTGTAA
* **** *
51100501 TAGAATTTTTTTTTA
65 TAAAAAAAATCTTTA
* * * *
51100516 ATGATCGCTTA-ACGTCAGTAACGAAATTAACGAATTTTATTAGTTAATACTT-TTTATTATAAT
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAAT
* *
51100579 AAAAGACATCTTTA
66 AAAAAAAATCTTTA
* * * *
51100593 ATAATCACTCA-ACGTCACTAACAAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAA
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTC-TTTATTGTAA
*** *
51100657 TAGAAAATTGTTTTTA
65 TA-AAAAAAATCTTTA
* *
51100673 ATGATCGCTCA-ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATACTT-TTTATTATAAT
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAAT
*
51100736 AAAAAACATCTTTA
66 AAAAAAAATCTTTA
* * *
51100750 ATAATCACTCA-ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTTGTTGTAA
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTC-TTTATTGTAA
* **
51100814 TAGAAAATTTCTTTA
65 TAAAAAAAATCTTTA
* * * * *
51100829 ATGATCGCT-AAACATCACTAACGAAATTAACAAATTTTATTAGTAAATATTT-TTTATTATAAT
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAAT
* *
51100892 AAAAGACATCTTTA
66 AAAAAAAATCTTTA
* * * *
51100906 ATGATCACTCA-ACGTCACTAACGAAATTGACAAATTTTATTAGTTAATATTTTTTTATTGTAAT
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAAT
* *
51100970 AAAAGACATCTTTA
66 AAAAAAAATCTTTA
*
51100984 ATGATCGCTCACACGTCACTAACGAAATTAACGAGTTTTATTAGTTAATATTCTCTTTATTGTAA
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATT-TCTTTATTGTAA
*
51101049 TAAAAAAAATTCTTTG
65 TAAAAAAAA-TCTTTA
* * * * *
51101065 ATGATCACTCACACATCACTAACGAAATTAACGAATTTTATTGGTTATTGTTATCTTTATTGTAA
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATT-TCTTTATTGTAA
* *
51101130 T-AAAAAAATATTTG
65 TAAAAAAAATCTTTA
* * * * *
51101144 ATGATCGCTCACATGTCACTAA-AAAATTAACGAATTTTATCAATTAATATTCTCCTTATTGTAA
1 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATT-TCTTTATTGTAA
* * *
51101208 GAAAAAAATATATTTG
65 TAAAAAAA-ATCTTTA
51101224 ATGATCGCTCACACGT
1 ATGATCGCTCACACGT
51101240 GTTAATATTT
Statistics
Matches: 621, Mismatches: 89, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
77 186 0.30
78 90 0.14
79 178 0.29
80 103 0.17
81 64 0.10
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (79 bp):
ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAAT
AAAAAAAATCTTTA
Found at i:51101404 original size:18 final size:18
Alignment explanation
Indices: 51101369--51101417 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
51101359 GAAAATATAT
51101369 TTTTAATTTTTAATTAAACA
1 TTTT-ATTTTTAATTAAA-A
*
51101389 TTTTATTTTTTA-TAAAA
1 TTTTATTTTTAATTAAAA
51101406 TATTTATTTTTA
1 T-TTTATTTTTA
51101418 TCTAGAACTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 2 0.08
18 13 0.50
19 7 0.27
20 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTATTTTTAATTAAAA
Found at i:51103069 original size:20 final size:20
Alignment explanation
Indices: 51103044--51103081 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51103034 TCCTGCTATC
51103044 TAATAA-AAACCTAAAATTAT
1 TAATAATAAA-CTAAAATTAT
51103064 TAATAATAAACTAAAATT
1 TAATAATAAACTAAAATT
51103082 GCCTATCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.32
Consensus pattern (20 bp):
TAATAATAAACTAAAATTAT
Found at i:51106502 original size:27 final size:28
Alignment explanation
Indices: 51106472--51106526 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
51106462 TATTTAGGCA
*
51106472 AATAACAAAAAAATATA-TATATTATAT
1 AATAACAAAAAAATATATTATATAATAT
**
51106499 AATATTAAAAAAATATATTATATAATAT
1 AATAACAAAAAAATATATTATATAATAT
51106527 TAAAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (28 bp):
AATAACAAAAAAATATATTATATAATAT
Found at i:51106514 original size:25 final size:25
Alignment explanation
Indices: 51106479--51106531 Score: 83
Period size: 23 Copynumber: 2.2 Consensus size: 25
51106469 GCAAATAACA
51106479 AAAAAATATATATATTATATAATATT
1 AAAAAATA-ATATATTATATAATATT
51106505 -AAAAA-AATATATTATATAATATT
1 AAAAAATAATATATTATATAATATT
51106528 AAAA
1 AAAA
51106532 TTTTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 17 0.65
24 4 0.15
25 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
AAAAAATAATATATTATATAATATT
Found at i:51106518 original size:23 final size:23
Alignment explanation
Indices: 51106488--51106531 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
51106478 AAAAAAATAT
51106488 ATATATTATATAATATTAAAAAA
1 ATATATTATATAATATTAAAAAA
51106511 ATATATTATATAATATTAAAA
1 ATATATTATATAATATTAAAA
51106532 TTTTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATATATTATATAATATTAAAAAA
Found at i:51108835 original size:15 final size:15
Alignment explanation
Indices: 51108817--51108856 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
51108807 TGCTGCTGTC
51108817 CAAACTGTTTTTGTG
1 CAAACTGTTTTTGTG
51108832 CAAACTGTTTTTGTG
1 CAAACTGTTTTTGTG
*
51108847 CAAGCTGTTT
1 CAAACTGTTT
51108857 ATTACCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.45
Consensus pattern (15 bp):
CAAACTGTTTTTGTG
Found at i:51115580 original size:34 final size:35
Alignment explanation
Indices: 51115522--51115588 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
51115512 CAAACACCAG
*
51115522 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
51115557 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
51115589 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:51117039 original size:19 final size:19
Alignment explanation
Indices: 51117018--51117121 Score: 81
Period size: 18 Copynumber: 5.5 Consensus size: 19
51117008 TTTTAAGTTT
*
51117018 TTTTTATGA-TTTTTATAG
1 TTTTTATAACTTTTTATAG
* *
51117036 TTTTTATAATTTTTTATAA
1 TTTTTATAACTTTTTATAG
* * *
51117055 TTTTGAT-ACTTGTAATAG
1 TTTTTATAACTTTTTATAG
51117073 TTTTTATAA-TTTTTATGAG
1 TTTTTATAACTTTTTAT-AG
*
51117092 TTTTTATAGAATTTTGT-TATG
1 TTTTTATA-ACTTTT-TATA-G
51117113 TTTTTATAA
1 TTTTTATAA
51117122 AAAAATTAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
18 26 0.38
19 25 0.36
20 3 0.04
21 14 0.20
22 1 0.01
ACGTcount: A:0.27, C:0.01, G:0.10, T:0.62
Consensus pattern (19 bp):
TTTTTATAACTTTTTATAG
Found at i:51117058 original size:9 final size:9
Alignment explanation
Indices: 51117018--51117099 Score: 74
Period size: 9 Copynumber: 8.9 Consensus size: 9
51117008 TTTTAAGTTT
*
51117018 TTTTTATGA
1 TTTTTATAA
*
51117027 TTTTTATAG
1 TTTTTATAA
51117036 TTTTTATAA
1 TTTTTATAA
51117045 TTTTTTATAA
1 -TTTTTATAA
* *
51117055 TTTTGATAC
1 TTTTTATAA
* * *
51117064 TTGTAATAG
1 TTTTTATAA
51117073 TTTTTATAA
1 TTTTTATAA
*
51117082 TTTTTATGAG
1 TTTTTAT-AA
51117092 TTTTTATA
1 TTTTTATA
51117100 GAATTTTGTT
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
9 42 0.71
10 17 0.29
ACGTcount: A:0.27, C:0.01, G:0.09, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:51117253 original size:18 final size:18
Alignment explanation
Indices: 51117210--51117253 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
51117200 ATTTTCATAT
*
51117210 TTTTTAAATATTTAATAA
1 TTTTTATATATTTAATAA
* *
51117228 GTTATATATATTTAATAA
1 TTTTTATATATTTAATAA
51117246 TTTTTATA
1 TTTTTATA
51117254 AAAAATAGAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTTTATATATTTAATAA
Found at i:51117433 original size:14 final size:14
Alignment explanation
Indices: 51117414--51117440 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51117404 ATTAATACAA
51117414 GAACTTAATTAAAT
1 GAACTTAATTAAAT
51117428 GAACTTAATTAAA
1 GAACTTAATTAAA
51117441 ATTTTAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (14 bp):
GAACTTAATTAAAT
Found at i:51117495 original size:10 final size:10
Alignment explanation
Indices: 51117480--51117504 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51117470 TTTAATAAAC
51117480 AAAAAAAAAG
1 AAAAAAAAAG
51117490 AAAAAAAAAG
1 AAAAAAAAAG
51117500 AAAAA
1 AAAAA
51117505 GAGTATAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:51118519 original size:15 final size:17
Alignment explanation
Indices: 51118501--51118533 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
51118491 AAATTAAATA
51118501 TAAATTTA-A-AATACT
1 TAAATTTATATAATACT
51118516 TAAATTTATATAATACT
1 TAAATTTATATAATACT
51118533 T
1 T
51118534 TTATAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAATTTATATAATACT
Found at i:51124912 original size:13 final size:13
Alignment explanation
Indices: 51124894--51124926 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
51124884 AATGGGAGAA
51124894 AGAGAAAACTAAG
1 AGAGAAAACTAAG
51124907 AGAGAAAACTAAG
1 AGAGAAAACTAAG
51124920 AGAGAAA
1 AGAGAAA
51124927 GATTGGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.64, C:0.06, G:0.24, T:0.06
Consensus pattern (13 bp):
AGAGAAAACTAAG
Found at i:51127055 original size:21 final size:21
Alignment explanation
Indices: 51127029--51127069 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51127019 ATCTGCTCAA
* *
51127029 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
51127050 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
51127070 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:51131315 original size:59 final size:58
Alignment explanation
Indices: 51131227--51131339 Score: 199
Period size: 59 Copynumber: 1.9 Consensus size: 58
51131217 AACAAATCCA
*
51131227 AAATAAATAATAAAATTTAAATTTGAATTTAAAATATATTTTAAAATAATTGATGAAT
1 AAATAAATAATAAAATTTAAATTTCAATTTAAAATATATTTTAAAATAATTGATGAAT
*
51131285 AAATAAATAATAAAAATTTCAATTTCAATTTAAAATATATTTTAAAATAATTGAT
1 AAATAAATAAT-AAAATTTAAATTTCAATTTAAAATATATTTTAAAATAATTGAT
51131340 ATTAGCTATA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
58 11 0.21
59 41 0.79
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (58 bp):
AAATAAATAATAAAATTTAAATTTCAATTTAAAATATATTTTAAAATAATTGATGAAT
Found at i:51135922 original size:40 final size:40
Alignment explanation
Indices: 51135846--51136305 Score: 685
Period size: 40 Copynumber: 11.6 Consensus size: 40
51135836 AACCCAAGTA
* * *
51135846 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
51135885 CCTTCGGGACTTAGCCCGGATATAATTACTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
51135925 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
51135965 CCTTCGGGACTTAGCCCGGATATAATTACTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
51136005 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
51136045 CCTTCGGGACTTAGCCCGGATATAATTACTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
51136085 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
51136125 CCTTCGGGACTTAGCCCGGATATAATTACTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
51136165 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
51136205 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
51136245 CCTTCGGGAC--AGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
51136283 CCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGA-CTTAGCCCGGATAT
51136306 CATTCGAATA
Statistics
Matches: 377, Mismatches: 40, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
37 3 0.01
38 32 0.08
39 13 0.03
40 329 0.87
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:51135978 original size:80 final size:80
Alignment explanation
Indices: 51135846--51136305 Score: 820
Period size: 80 Copynumber: 5.8 Consensus size: 80
51135836 AACCCAAGTA
* * *
51135846 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
51135910 TTACTAGAACAAATG
66 TTACTAGAACAAATG
51135925 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
51135990 TTACTAGAACAAATG
66 TTACTAGAACAAATG
51136005 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
51136070 TTACTAGAACAAATG
66 TTACTAGAACAAATG
51136085 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
51136150 TTACTAGAACAAATG
66 TTACTAGAACAAATG
51136165 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* *
51136230 TCACTAGCACAAATG
66 TTACTAGAACAAATG
* *
51136245 CCTTCGGGAC--AGCCCGGATATAGTAACTAGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGA-CTTAGCCCGGATAT
51136306 CATTCGAATA
Statistics
Matches: 372, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
77 3 0.01
78 45 0.12
79 13 0.03
80 311 0.84
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TTACTAGAACAAATG
Found at i:51137722 original size:13 final size:13
Alignment explanation
Indices: 51137706--51137733 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51137696 TTTATTATTT
51137706 TTAACACAAAATA
1 TTAACACAAAATA
51137719 TTAACACAAAATA
1 TTAACACAAAATA
51137732 TT
1 TT
51137734 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:51140916 original size:24 final size:26
Alignment explanation
Indices: 51140870--51140919 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
51140860 GTACGACAAT
51140870 TTAAAATAGAGGATATATATATAATA
1 TTAAAATAGAGGATATATATATAATA
*
51140896 TTAAAATAG-GTA-ATATATATAATA
1 TTAAAATAGAGGATATATATATAATA
51140920 AATACTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.52
25 2 0.09
26 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (26 bp):
TTAAAATAGAGGATATATATATAATA
Found at i:51141058 original size:24 final size:24
Alignment explanation
Indices: 51141026--51141124 Score: 80
Period size: 25 Copynumber: 4.1 Consensus size: 24
51141016 ATAAGACAAT
*
51141026 TTTAAAAT-AATATATATAAAGAAA
1 TTTAAAATAAATATGTA-AAAGAAA
* **
51141050 TTTAAAATAAATAT-T--AGGAGG
1 TTTAAAATAAATATGTAAAAGAAA
* *
51141071 CTCAAAATAATAATATGTAAAAGAAA
1 TTTAAAAT-A-AATATGTAAAAGAAA
51141097 TTTAAAATAAATAATGTAAAAGAAA
1 TTTAAAATAAAT-ATGTAAAAGAAA
51141122 TTT
1 TTT
51141125 TAAAGTGAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
21 9 0.16
22 1 0.02
23 5 0.09
24 13 0.22
25 21 0.36
26 9 0.16
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (24 bp):
TTTAAAATAAATATGTAAAAGAAA
Found at i:51141104 original size:26 final size:26
Alignment explanation
Indices: 51141074--51141154 Score: 87
Period size: 26 Copynumber: 3.1 Consensus size: 26
51141064 TAGGAGGCTC
51141074 AAAATAATAATATGTAAAAGAAATTT
1 AAAATAATAATATGTAAAAGAAATTT
51141100 AAAAT-A-AATAATGTAAAAGAAATTTT
1 AAAATAATAAT-ATGTAAAAGAAA-TTT
* * *
51141126 AAAGTGAATAACATGTAAAA-CAATTT
1 AAAAT-AATAATATGTAAAAGAAATTT
51141152 AAA
1 AAA
51141155 CCAAGTAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
24 3 0.06
25 13 0.28
26 18 0.38
27 2 0.04
28 9 0.19
29 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.28
Consensus pattern (26 bp):
AAAATAATAATATGTAAAAGAAATTT
Found at i:51141122 original size:14 final size:13
Alignment explanation
Indices: 51141082--51141122 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 13
51141072 TCAAAATAAT
51141082 AATATGTAAAAGA
1 AATATGTAAAAGA
*
51141095 AAT-T-TAAAATA
1 AATATGTAAAAGA
51141106 AATAATGTAAAAGA
1 AAT-ATGTAAAAGA
51141120 AAT
1 AAT
51141123 TTTAAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
11 9 0.39
12 1 0.04
13 4 0.17
14 9 0.39
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (13 bp):
AATATGTAAAAGA
Found at i:51141743 original size:26 final size:25
Alignment explanation
Indices: 51141707--51141758 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
51141697 TAGATGGTAT
**
51141707 ATATACATAAAAGTGTAAAATAAATA
1 ATATACATAAAA-CCTAAAATAAATA
*
51141733 ATATATATAAAACCTAAAATAAATA
1 ATATACATAAAACCTAAAATAAATA
51141758 A
1 A
51141759 CAATAAAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (25 bp):
ATATACATAAAACCTAAAATAAATA
Found at i:51143882 original size:24 final size:24
Alignment explanation
Indices: 51143850--51143895 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
51143840 TACTCCACCG
51143850 TTAAAAGATATTAAAAAAAAAAAC
1 TTAAAAGATATTAAAAAAAAAAAC
51143874 TTAAAAGATATTAAAAAAAAAA
1 TTAAAAGATATTAAAAAAAAAA
51143896 TCATGTTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (24 bp):
TTAAAAGATATTAAAAAAAAAAAC
Found at i:51147449 original size:23 final size:23
Alignment explanation
Indices: 51147422--51147466 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
51147412 TCCCTTGGAT
51147422 GTATCATAATTTAGTGTGTATAA
1 GTATCATAATTTAGTGTGTATAA
51147445 GTATCATAATTTAGTGTGTATA
1 GTATCATAATTTAGTGTGTATA
51147467 TATATACACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.44
Consensus pattern (23 bp):
GTATCATAATTTAGTGTGTATAA
Found at i:51149295 original size:23 final size:21
Alignment explanation
Indices: 51149256--51149299 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
51149246 TTCATAAAAT
51149256 TTTAAAATAAAGATATAATTTA
1 TTTAAAATAAAGATAT-ATTTA
**
51149278 TTTAAAATCAAATTTATATTTA
1 TTTAAAAT-AAAGATATATTTA
51149300 ACATATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
TTTAAAATAAAGATATATTTA
Found at i:51151812 original size:6 final size:6
Alignment explanation
Indices: 51151801--51151867 Score: 125
Period size: 6 Copynumber: 11.2 Consensus size: 6
51151791 TTTATACCAT
*
51151801 TATGTA TATGTA TATGTA TATATA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
51151849 TATGTA TATGTA TATGTA T
1 TATGTA TATGTA TATGTA T
51151868 GTAACGTCCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (6 bp):
TATGTA
Found at i:51152823 original size:8 final size:10
Alignment explanation
Indices: 51152794--51152834 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
51152784 ATTCTAATAA
*
51152794 TCACATATTT
1 TCACACATTT
51152804 TCACACATTT
1 TCACACATTT
51152814 TCACA-A-TT
1 TCACACATTT
*
51152822 TCATACATTT
1 TCACACATTT
51152832 TCA
1 TCA
51152835 TTCAATTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 6 0.22
9 2 0.07
10 19 0.70
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (10 bp):
TCACACATTT
Found at i:51154284 original size:4 final size:4
Alignment explanation
Indices: 51154275--51154305 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
51154265 CCTTTTCTCC
51154275 CTTT CTTT CTTT CTTT CTTT CCTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CT
51154306 CCCCTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:51154890 original size:6 final size:6
Alignment explanation
Indices: 51154879--51154909 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
51154869 GGTCATTACA
51154879 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT A
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT A
51154910 CATGCATGCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.48
Consensus pattern (6 bp):
ATGTAT
Found at i:51161134 original size:18 final size:18
Alignment explanation
Indices: 51161078--51161146 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 18
51161068 ACTCTTTAAT
*
51161078 GTCAGTTATTCAGTAAC-
1 GTCAATTATTCAGTAACA
* * *
51161095 GATAAATTATCCAGTAATA
1 G-TCAATTATTCAGTAACA
*
51161114 GTCAATTATTCAGTAGCA
1 GTCAATTATTCAGTAACA
*
51161132 GTCAGTTATTCAGTA
1 GTCAATTATTCAGTA
51161147 CCTTTATTTA
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
17 1 0.02
18 39 0.95
19 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (18 bp):
GTCAATTATTCAGTAACA
Found at i:51162429 original size:17 final size:15
Alignment explanation
Indices: 51162401--51162434 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
51162391 TCCCTATTTC
51162401 TCCCTTTTCTTTCTT
1 TCCCTTTTCTTTCTT
51162416 TCCCTTTTTCCTTTCTT
1 TCCC-TTTT-CTTTCTT
51162433 TC
1 TC
51162435 TTTCTCCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (15 bp):
TCCCTTTTCTTTCTT
Found at i:51162449 original size:25 final size:25
Alignment explanation
Indices: 51162406--51162454 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51162396 ATTTCTCCCT
*
51162406 TTTCTTTCTTTCCCTTTTTCCTTTC
1 TTTCTTTCTTCCCCTTTTTCCTTTC
*
51162431 TTTCTTTC-TCCCCTGTTTTTCTTT
1 TTTCTTTCTTCCCCT-TTTTCCTTT
51162455 TCTATTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTCTTTCTTCCCCTTTTTCCTTTC
Found at i:51167144 original size:24 final size:23
Alignment explanation
Indices: 51167095--51167148 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
51167085 TACTTTAAGT
* *
51167095 AAATTTTGATAAAACTCAGCTGA
1 AAATTTTGATAAAAATCACCTGA
* *
51167118 AAATTTTGCTAAAAATCCCCTGTA
1 AAATTTTGATAAAAATCACCTG-A
51167142 AAATTTT
1 AAATTTT
51167149 TAACTCTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (23 bp):
AAATTTTGATAAAAATCACCTGA
Found at i:51172920 original size:25 final size:25
Alignment explanation
Indices: 51172886--51172944 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
51172876 ATATCGGGAG
*
51172886 AAGAGCCATTAACAGGAATCTTACA
1 AAGAGCCATTAACAGGAATCTCACA
51172911 AAGAGCCATTAACAGGAATCTCACA
1 AAGAGCCATTAACAGGAATCTCACA
51172936 AAGAGCCAT
1 AAGAGCCAT
51172945 ATAAAGGGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.44, C:0.22, G:0.17, T:0.17
Consensus pattern (25 bp):
AAGAGCCATTAACAGGAATCTCACA
Found at i:51175916 original size:15 final size:17
Alignment explanation
Indices: 51175896--51175935 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
51175886 AATCCTTTAA
51175896 AAATTATAAAAATA-T-
1 AAATTATAAAAATAGTG
*
51175911 AAATTATTAAAATAGTG
1 AAATTATAAAAATAGTG
51175928 AAATTATA
1 AAATTATA
51175936 TTTTTATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 1 0.05
17 7 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (17 bp):
AAATTATAAAAATAGTG
Found at i:51175979 original size:24 final size:23
Alignment explanation
Indices: 51175952--51175999 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
51175942 TCATCATAAA
51175952 AATTATAATTTAATTTCGACCCCT
1 AATTATAATTTAATTTC-ACCCCT
* **
51175976 AATTTTTTTTTAATTTCACCCCT
1 AATTATAATTTAATTTCACCCCT
51175999 A
1 A
51176000 TCAATCGGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.29, C:0.21, G:0.02, T:0.48
Consensus pattern (23 bp):
AATTATAATTTAATTTCACCCCT
Found at i:51185086 original size:17 final size:16
Alignment explanation
Indices: 51185060--51185091 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
51185050 GAATACAATG
51185060 ATAATAAGATGATTAA
1 ATAATAAGATGATTAA
51185076 ATAAGTAAGATGATTA
1 ATAA-TAAGATGATTA
51185092 TTTTGAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (16 bp):
ATAATAAGATGATTAA
Found at i:51187806 original size:21 final size:21
Alignment explanation
Indices: 51187742--51187807 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
51187732 TTTTTCTTAG
51187742 ATTATATATTATTATT-AATT-
1 ATTAT-TATTATTATTAAATTA
** *
51187762 ATTATTATGGTT-TTATATTAA
1 ATTATTATTATTATTAAATT-A
51187783 ATTATTATTATTATTAAATTA
1 ATTATTATTATTATTAAATTA
51187804 ATTA
1 ATTA
51187808 AGATAGTAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
18 2 0.06
19 8 0.22
20 5 0.14
21 15 0.42
22 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (21 bp):
ATTATTATTATTATTAAATTA
Found at i:51188065 original size:13 final size:12
Alignment explanation
Indices: 51188037--51188070 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
51188027 AAATAGATAT
51188037 TTATTATAATAA
1 TTATTATAATAA
*
51188049 TTATTATATTAAA
1 TTATTATAAT-AA
51188062 TTATTATAA
1 TTATTATAA
51188071 AACTAACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TTATTATAATAA
Found at i:51188468 original size:7 final size:7
Alignment explanation
Indices: 51188452--51188486 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
51188442 ATTTAATCCG
51188452 AATT-TT
1 AATTATT
51188458 AATTATT
1 AATTATT
51188465 AATTATT
1 AATTATT
51188472 AATTATT
1 AATTATT
51188479 AATTATT
1 AATTATT
51188486 A
1 A
51188487 TATTCTGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.14
7 24 0.86
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATTATT
Found at i:51189147 original size:20 final size:19
Alignment explanation
Indices: 51189106--51189152 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
51189096 TGTTACTGAA
* *
51189106 TGATATTG-ATAAATTGAT
1 TGATATTGAAAAAATTGAC
51189124 TGATATTGAAAAATATTGAC
1 TGATATTGAAAAA-ATTGAC
51189144 TGATATTGA
1 TGATATTGA
51189153 GCTTGGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.32
19 3 0.12
20 14 0.56
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.40
Consensus pattern (19 bp):
TGATATTGAAAAAATTGAC
Found at i:51190015 original size:19 final size:19
Alignment explanation
Indices: 51189993--51190055 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
51189983 AAGCACATGT
*
51189993 GCTAAGCGGAAGCCCGAAG
1 GCTAAGCAGAAGCCCGAAG
*
51190012 GCTAA-CTGAAGCACAC-AAG
1 GCTAAGCAGAAGC-C-CGAAG
51190031 TGCT-AGACAGAAGCCCGAAG
1 -GCTAAG-CAGAAGCCCGAAG
51190051 GCTAA
1 GCTAA
51190056 CTAAAGCTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 13
0.70 0.04 0.26
Matches are distributed among these distances:
18 6 0.17
19 14 0.40
20 9 0.26
21 6 0.17
ACGTcount: A:0.37, C:0.25, G:0.29, T:0.10
Consensus pattern (19 bp):
GCTAAGCAGAAGCCCGAAG
Found at i:51190024 original size:37 final size:37
Alignment explanation
Indices: 51189964--51190062 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 37
51189954 ATCGTGATCT
* * * *
51189964 GAAGCCCGAAGTCTAGCTAAAGCACATGTGCTA-AGCG
1 GAAGCCCGAAGGCTAACTAAAGCACAAGTGCTAGA-CA
*
51190001 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAGACA
1 GAAGCCCGAAGGCTAACTAAAG--CACAAGTGCTAGACA
51190040 GAAGCCCGAAGGCTAACTAAAGC
1 GAAGCCCGAAGGCTAACTAAAGC
51190063 TCATCAGAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
37 20 0.38
39 32 0.60
40 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.26, T:0.12
Consensus pattern (37 bp):
GAAGCCCGAAGGCTAACTAAAGCACAAGTGCTAGACA
Found at i:51190501 original size:21 final size:22
Alignment explanation
Indices: 51190461--51190501 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51190451 TTCCAAATAA
* *
51190461 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
51190483 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
51190502 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:51192872 original size:21 final size:21
Alignment explanation
Indices: 51192843--51192887 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51192833 CGGGCTCTCA
*
51192843 ACATGGCCGTGTGACCTAGCG
1 ACATCGCCGTGTGACCTAGCG
* * *
51192864 ACATCGCCGTTTGATCTAGTG
1 ACATCGCCGTGTGACCTAGCG
51192885 ACA
1 ACA
51192888 CAACCGTGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (21 bp):
ACATCGCCGTGTGACCTAGCG
Found at i:51195080 original size:86 final size:86
Alignment explanation
Indices: 51194989--51195171 Score: 215
Period size: 86 Copynumber: 2.1 Consensus size: 86
51194979 AAATTTAAAC
* * ** * * * *
51194989 TTAAAAATAATTATAT-TGTATATTTATATTAAGCTTTTAATCGAGTTGGTATTACAAGTTAATC
1 TTAAAAAAAATTATATATCTATACATATA-TAAGCTTCTAATCAAGTTGATATTACAAGTTAACC
* **
51195053 GGGCATTAATTTAGTTGAGAAA
65 GGGAACCAATTTAGTTGAGAAA
* *
51195075 TTAAAAAAAATTATATATCTATACATATATGAGCTTCTAATTAAGTTGATATTACAAGTTAACCG
1 TTAAAAAAAATTATATATCTATACATATATAAGCTTCTAATCAAGTTGATATTACAAGTTAACCG
*
51195140 GGAACCAATTTATTTGAGAAA
66 GGAACCAATTTAGTTGAGAAA
51195161 TTACAAAAAAA
1 TTA-AAAAAAA
51195172 ATGTCATTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
86 65 0.80
87 16 0.20
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (86 bp):
TTAAAAAAAATTATATATCTATACATATATAAGCTTCTAATCAAGTTGATATTACAAGTTAACCG
GGAACCAATTTAGTTGAGAAA
Found at i:51195586 original size:24 final size:24
Alignment explanation
Indices: 51195559--51195606 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
51195549 ATGAGATTAT
51195559 TCCTATATTAGGGAATCCTGACAA
1 TCCTATATTAGGGAATCCTGACAA
51195583 TCCTATATTAGGGAATCCTGACAA
1 TCCTATATTAGGGAATCCTGACAA
51195607 ACTCAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (24 bp):
TCCTATATTAGGGAATCCTGACAA
Found at i:51197362 original size:20 final size:20
Alignment explanation
Indices: 51197285--51197366 Score: 71
Period size: 20 Copynumber: 4.0 Consensus size: 20
51197275 TATTAAGGAT
*
51197285 TTTATTTAGATTTAATCTTATGA
1 TTTATTTATATTT-ATCTT-T-A
*
51197308 TTTATTT-TCATTTATATTTA
1 TTTATTTAT-ATTTATCTTTA
51197328 TTTATCCTTA-A-TTATCTTTA
1 TTTAT--TTATATTTATCTTTA
51197348 TTTATTTATATTTATCTTT
1 TTTATTTATATTTATCTTT
51197367 TAGAATTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
18 3 0.06
19 1 0.02
20 27 0.54
21 2 0.04
22 6 0.12
23 11 0.22
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTATTTATATTTATCTTTA
Found at i:51214332 original size:18 final size:18
Alignment explanation
Indices: 51214306--51214340 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51214296 TGTTTTTTAT
* *
51214306 TGTTTATATTATTTGTAA
1 TGTTAATATTAATTGTAA
51214324 TGTTAATATTAATTGTA
1 TGTTAATATTAATTGTA
51214341 TCATTGGTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (18 bp):
TGTTAATATTAATTGTAA
Found at i:51214664 original size:24 final size:25
Alignment explanation
Indices: 51214637--51214685 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51214627 CTTTTTTTAT
*
51214637 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
51214661 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
51214686 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:51214678 original size:25 final size:23
Alignment explanation
Indices: 51214649--51214713 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
51214639 AATAAAAAAC
*
51214649 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
51214674 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
51214695 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
51214714 AATAATGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:51214712 original size:19 final size:20
Alignment explanation
Indices: 51214675--51214713 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
51214665 TCAAATACAT
51214675 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
51214695 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
51214714 AATAATGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:51214992 original size:16 final size:17
Alignment explanation
Indices: 51214971--51215003 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
51214961 ATTTAAATAC
51214971 ATTTTTAAACAT-TAAT
1 ATTTTTAAACATATAAT
*
51214987 ATTTTTATACATATAAT
1 ATTTTTAAACATATAAT
51215004 TTCTTTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTTTTAAACATATAAT
Found at i:51215327 original size:23 final size:24
Alignment explanation
Indices: 51215282--51215327 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
51215272 TTCACATGTA
51215282 TATGGTACATATTAAATTATTTTAC
1 TATGGTACATATT-AATTATTTTAC
*
51215307 TATGGTACATGTT-ATTATTTT
1 TATGGTACATATTAATTATTTT
51215328 CATATAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
25 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (24 bp):
TATGGTACATATTAATTATTTTAC
Found at i:51215955 original size:132 final size:130
Alignment explanation
Indices: 51215762--51216153 Score: 570
Period size: 132 Copynumber: 3.0 Consensus size: 130
51215752 TAGCTTTATA
* * * * *
51215762 ATCATTCATTCAAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGT
1 ATCAGTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
*
51215827 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAACCGAATATCACTTCAAAATTTC
66 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTC
* * * *
51215892 ATTCAAGTCTTTTAAAAATTCTTTAAAATGAAGACGAAATTTGGTATTTGGCAATTCGCGGAATC
1 A-TC-AGTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATC
* * * * * * *
51215957 GTACCCTAACGTGCTGGGTTGCAATTCCGAGTTTGCTGAAAATAATCAAATATCACTTCAAGATT
64 GTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATT
51216022 TC
129 TC
*
51216024 ATCATTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
1 ATCAGTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
* * *
51216089 GCTCTAACGTGTTGGGTTACAATTTCGCGTTCGCTCAAAATAATCGAATATCACTTC-AAATTTC
66 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTC
51216153 A
1 A
51216154 CTCGTATCTT
Statistics
Matches: 228, Mismatches: 32, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
129 7 0.03
130 106 0.46
131 4 0.02
132 111 0.49
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (130 bp):
ATCAGTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTC
Found at i:51216096 original size:130 final size:130
Alignment explanation
Indices: 51215763--51216269 Score: 581
Period size: 130 Copynumber: 3.9 Consensus size: 130
51215753 AGCTTTATAA
* * * *
51215763 TCATTCATTCAAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTG
1 TCATTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGTG
*
51215828 CCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAACCGAATATCACTTCAAAATTTCA
66 CCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTC-AAATTTCA
*
51215893 T
130 C
* * * * *
51215894 TCAAGTCTTTTAAAAATTCTTTAAAATGAAGACGAAATTTGGTATTTGGCAATTCGCGGAATCGT
1 TC-ATTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
* * * * * *
51215959 ACCCTAACGTGCTGGGTTGCAATTCCGAGTTTGCTGAAAATAATCAAATATCACTTCAAGATTTC
65 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAA-ATTTC
51216024 A-
129 AC
51216025 TCATTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGTG
1 TCATTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGTG
* * *
51216090 CTCTAACGTGTTGGGTTACAATTTCGCGTTCGCTCAAAATAATCGAATATCACTTCAAATTTCAC
66 CCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAATTTCAC
* * * * * * * * * *
51216155 TCGTATC-TTCTAAAAATCCCTTAAAACGAAGGC-AATACTCGGTGTTTGACGATTCG-GGAATC
1 TCAT-TCATTC-AAAAATTCTTTAAAACGAAGACGAA-ATTTGATATTTGGCAATTCGCGGAATC
* * * * ** * * *
51216217 ATGCCCTATCGCGCTGGGTTGTGATTTCTCGTTTGGTCAAAACAATCGAATAT
63 GTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAT
51216270 TCCTTTAGGT
Statistics
Matches: 318, Mismatches: 52, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
129 6 0.02
130 162 0.51
131 41 0.13
132 109 0.34
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (130 bp):
TCATTCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGTG
CCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAATTTCAC
Found at i:51216548 original size:132 final size:128
Alignment explanation
Indices: 51215773--51216551 Score: 543
Period size: 132 Copynumber: 5.9 Consensus size: 128
51215763 TCATTCATTC
* * *
51215773 AAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAACTCTTTAAAACGAA-A-GAAATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * *
51215838 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAACCGAATATCACTTCAAAATTTCATTCAAGTCTT
64 CTGGGTTGCAATTTCCCGTTTGCTCAAAATAATCGAATATCACTTC-AAATTTCACTCAA-TTTT
51215903 TT
127 TT
* * * * * *
51215905 AAAAATTCTTTAAAATGAAGACGAAATTTGGTATTTGGCAATTCGCGGAATCGTACCCTAACGTG
1 AAAAACTCTTTAAAACGAA-A-GAAATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
51215970 CTGGGTTGCAA-TTCCGAGTTTGCTGAAAATAATCAAATATCACTTCAAGATTTCA-TC-ATTCA
64 CTGGGTTGCAATTTCC-CGTTTGCTCAAAATAATCGAATATCACTTCAA-ATTTCACTCAATT-T
*
51216032 TTC
126 TTT
* * * *
51216035 AAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGTGCTCTAACGTG
1 AAAAACTCTTTAAAACGAA-A-GAAATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * * *
51216100 TTGGGTTACAATTTCGCGTTCGCTCAAAATAATCGAATATCACTTCAAATTTCACTCGTATCTTC
64 CTGGGTTGCAATTTCCCGTTTGCTCAAAATAATCGAATATCACTTCAAATTTCACTC-AATTTTT
51216165 T
128 T
* * * * * * * * *
51216166 AAAAA-TCCCTTAAAACGAAGGCAATACTCGGTGTTTGACGATTCG-GGAATCATGCCCTATCGC
1 AAAAACT-CTTTAAAACGAAAG-AA-ATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGT
** * * * * ** *
51216229 GCTGGGTTGTGATTTCTCGTTTGGTCAAAACAATCGAATATTC-CTTTAGGTTTTCACTCATTTT
63 GCTGGGTTGCAATTTCCCGTTTGCTCAAAATAATCGAATA-TCACTTCA-AATTTCACTCAATTT
51216293 TTT
126 TTT
* ** * ** * * * *
51216296 AAGAAAACAT-TTTAAAACGAAGGTGATGTCCAATGTTTGGGGATTTG-AGAATCGTGACCTATC
1 -A-AAAAC-TCTTTAAAACGAAAGAAAT-T-CGATGTTTGGCAATTCGCGGAATCGTGCCCTAAC
* * * * * * * *
51216359 GTGCTGGGTTGCGCATTT-TC-TTTGGTTCAAAACAATTGAAGATCCCTTCAGAGTTTCACTCAC
61 GTGCTGGGTTGC-AATTTCCCGTTT-GCTCAAAATAATCGAATATCACTTCA-AATTTCACTCA-
51216422 ATTTTTT
122 ATTTTTT
** * * * *
51216429 AAAAACTCTAAAAAATGAAAGAAACGTTCGATGTTTGGCAATTCGGGGAATAGTGCCCTATCGTG
1 AAAAACTCTTTAAAACGAAAGAAA--TTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* * **
51216494 CTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTTCTTCGAAATTTCACTC
64 CTGGGTTGCAATTTCCCGTTTGCTCAAAATAATCGAATATCACTTC-AAATTTCACTC
51216552 GTATTTTCTA
Statistics
Matches: 516, Mismatches: 102, Indels: 58
0.76 0.15 0.09
Matches are distributed among these distances:
129 8 0.02
130 162 0.31
131 89 0.17
132 241 0.47
133 15 0.03
134 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (128 bp):
AAAAACTCTTTAAAACGAAAGAAATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGCT
GGGTTGCAATTTCCCGTTTGCTCAAAATAATCGAATATCACTTCAAATTTCACTCAATTTTTT
Found at i:51238424 original size:583 final size:583
Alignment explanation
Indices: 51237318--51238483 Score: 2244
Period size: 583 Copynumber: 2.0 Consensus size: 583
51237308 GGTTTCGACA
51237318 GCTTGGCGACTCCGCTGGGGATTGAACTTGAGTCGAGCCATAAAAATCGATTTTTTGCTGTCCTT
1 GCTTGGCGACTCCGCTGGGGATTGAACTTGAGTCGAGCCATAAAAATCGATTTTTTGCTGTCCTT
*
51237383 TTGTCAAAAATCAAAATTTGTTTTAAAAATCATGTATCTATCGATTGCATTTGATTGTATGTTTG
66 TTGTCAAAAATCAAAATCTGTTTTAAAAATCATGTATCTATCGATTGCATTTGATTGTATGTTTG
* *
51237448 TTTTGGTGTGGGTCTTGTAGAATAACACTGCATTTCATTGCACGACCACTGAGGTTACACCTTCT
131 TTTTGGTGCGGGTCTTGTAGAATAACACTGCATTTCATTGCACGACCACTGAGGTCACACCTTCT
51237513 AAGTGGGAGTAAGTAGCTACGCTTTCGTGAGGTTTTCACCTCCACATGGGCTAGTGGATTGCTTC
196 AAGTGGGAGTAAGTAGCTACGCTTTCGTGAGGTTTTCACCTCCACATGGGCTAGTGGATTGCTTC
51237578 CGGGGTACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTAC
261 CGGGGTACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTAC
51237643 CCCCTCGAATTGAACTCAATCTATATGAGCCTATAATGGGTAAAGATTGAGGAATCTGCTGGTTC
326 CCCCTCGAATTGAACTCAATCTATATGAGCCTATAATGGGTAAAGATTGAGGAATCTGCTGGTTC
51237708 GGGTACCCTTTTTCCTAGAACTAAACCACATATAGTGAACCTTAGGAGCTATCCTTGGGCGAAGC
391 GGGTACCCTTTTTCCTAGAACTAAACCACATATAGTGAACCTTAGGAGCTATCCTTGGGCGAAGC
51237773 CGCGTCGAGCCTTAGTACTTACCCGTATATGCGTTATGATTATCGTTTATGTGCTTGCATTTTAT
456 CGCGTCGAGCCTTAGTACTTACCCGTATATGCGTTATGATTATCGTTTATGTGCTTGCATTTTAT
51237838 CACTATTTTTTGATACTAACCGGTGTTTTGTTTTGATTGTCTTTTTTGCATGACATTGCATAC
521 CACTATTTTTTGATACTAACCGGTGTTTTGTTTTGATTGTCTTTTTTGCATGACATTGCATAC
51237901 GCTTGGCGACTCCGCTGGGGATTGAACTTGAGTCGAGCCATAAAAATCGATTTTTTGCTGTCCTT
1 GCTTGGCGACTCCGCTGGGGATTGAACTTGAGTCGAGCCATAAAAATCGATTTTTTGCTGTCCTT
*
51237966 TTGTCAAAAATCAAAATCTGTTTTAAAAATCATGTATCTTTCGATTGCATTTGATTGTATGTTTG
66 TTGTCAAAAATCAAAATCTGTTTTAAAAATCATGTATCTATCGATTGCATTTGATTGTATGTTTG
* *
51238031 TTTTGGTGCGGGTCTTGTAGAATAGCACTGCATTTCATTGCATGACCACT-ATGGTCACACCTTC
131 TTTTGGTGCGGGTCTTGTAGAATAACACTGCATTTCATTGCACGACCACTGA-GGTCACACCTTC
*
51238095 TAAGTGGGAGTAAGTAGCTACGCTTTCGTGAGGTTTTCACCTCCGCATGGGCTAGTGGATTGCTT
195 TAAGTGGGAGTAAGTAGCTACGCTTTCGTGAGGTTTTCACCTCCACATGGGCTAGTGGATTGCTT
51238160 CCGGGGTACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTA
260 CCGGGGTACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTA
51238225 CCCCCTCGAATTGAACTCAATCTATATGAGCCTATAATGGGTAAAGATTGAGGAATCTGCTGGTT
325 CCCCCTCGAATTGAACTCAATCTATATGAGCCTATAATGGGTAAAGATTGAGGAATCTGCTGGTT
*
51238290 CGGGTACCCTTTTTCCTAGAACTAAACCACATATAGTGAACCTTAGGAGCTATCCTTGGGTGAAG
390 CGGGTACCCTTTTTCCTAGAACTAAACCACATATAGTGAACCTTAGGAGCTATCCTTGGGCGAAG
51238355 CCGCGTCGAGCCTTAGTACTTACCCGTATATGCGTTATGATTATCGTTTATGTGCTTGCATTTTA
455 CCGCGTCGAGCCTTAGTACTTACCCGTATATGCGTTATGATTATCGTTTATGTGCTTGCATTTTA
51238420 TCACTATTTTTTGATACTAACCGGTGTTTTGTTTTGATTGTCTTTTTTGCATGACATTGCATAC
520 TCACTATTTTTTGATACTAACCGGTGTTTTGTTTTGATTGTCTTTTTTGCATGACATTGCATAC
51238484 TAAAGGAGGC
Statistics
Matches: 574, Mismatches: 8, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
582 1 0.00
583 573 1.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (583 bp):
GCTTGGCGACTCCGCTGGGGATTGAACTTGAGTCGAGCCATAAAAATCGATTTTTTGCTGTCCTT
TTGTCAAAAATCAAAATCTGTTTTAAAAATCATGTATCTATCGATTGCATTTGATTGTATGTTTG
TTTTGGTGCGGGTCTTGTAGAATAACACTGCATTTCATTGCACGACCACTGAGGTCACACCTTCT
AAGTGGGAGTAAGTAGCTACGCTTTCGTGAGGTTTTCACCTCCACATGGGCTAGTGGATTGCTTC
CGGGGTACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTAC
CCCCTCGAATTGAACTCAATCTATATGAGCCTATAATGGGTAAAGATTGAGGAATCTGCTGGTTC
GGGTACCCTTTTTCCTAGAACTAAACCACATATAGTGAACCTTAGGAGCTATCCTTGGGCGAAGC
CGCGTCGAGCCTTAGTACTTACCCGTATATGCGTTATGATTATCGTTTATGTGCTTGCATTTTAT
CACTATTTTTTGATACTAACCGGTGTTTTGTTTTGATTGTCTTTTTTGCATGACATTGCATAC
Found at i:51244003 original size:11 final size:11
Alignment explanation
Indices: 51243989--51244019 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
51243979 AGGAGCTCGA
51243989 AAAGAAGAAAG
1 AAAGAAGAAAG
51244000 AAAGAAGAAAG
1 AAAGAAGAAAG
51244011 AAAGAAGAA
1 AAAGAAGAA
51244020 GAGCGCGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
AAAGAAGAAAG
Found at i:51246586 original size:18 final size:18
Alignment explanation
Indices: 51246560--51246594 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51246550 GTTTTTTTAT
* *
51246560 TGTTTATATTATTTGTAA
1 TGTTAATATTAATTGTAA
51246578 TGTTAATATTAATTGTA
1 TGTTAATATTAATTGTA
51246595 TCATTTGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (18 bp):
TGTTAATATTAATTGTAA
Found at i:51247232 original size:23 final size:24
Alignment explanation
Indices: 51247187--51247232 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
51247177 TTCACATGTA
51247187 TATGGTACATATTAAATTATTTTAC
1 TATGGTACATATT-AATTATTTTAC
*
51247212 TATGGTACATGTT-ATTATTTT
1 TATGGTACATATTAATTATTTT
51247233 CATATAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
25 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (24 bp):
TATGGTACATATTAATTATTTTAC
Found at i:51247999 original size:130 final size:131
Alignment explanation
Indices: 51247666--51248172 Score: 551
Period size: 130 Copynumber: 3.9 Consensus size: 131
51247656 AGCTTTATAA
* * * * * *
51247666 TCAT-TCATTCAAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCACGAAATCGT
1 TCATATCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
* *
51247730 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAACCGAATATCACTGCAAAATTTC
66 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTC-AAATTTC
*
51247795 AT
130 AC
* * * *
51247797 TCATGTCTTTTAAAAATTCTTTAAAATGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
1 TCATATCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
* * * * * *
51247862 ACCCTAACGTGCTGGGTTGCAATTCCGAGTTTGCTGAAAATAATCAAATATC-CTTTCAAGATTT
66 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCAC-TTCAA-ATTT
51247926 CA-
129 CAC
51247928 TCAT-TCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
1 TCATATCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
* * *
51247992 GCTCTAACGTGTTGGGTTACAATTTCGCGTTCGCTCAAAATAATCGAATATCACTTCAAATTTCA
66 GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAATTTCA
51248057 C
131 C
* * * * * * * * * *
51248058 TCGTATC-TTCTAAAAATCCCTTAAAACGAAGGC-AATACTCGGTGTTTGACGATTCG-GGAATC
1 TCATATCATTC-AAAAATTCTTTAAAACGAAGACGAA-ATTTGATATTTGGCAATTCGCGGAATC
* * * * ** * * *
51248120 ATGCCCTATCGCGCTGGGTTGTGATTTCTCGTTTGGTCAAAACAATCGAATAT
64 GTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAT
51248173 TCCTTTAGGT
Statistics
Matches: 317, Mismatches: 51, Indels: 17
0.82 0.13 0.04
Matches are distributed among these distances:
129 6 0.02
130 160 0.50
131 47 0.15
132 104 0.33
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (131 bp):
TCATATCATTCAAAAATTCTTTAAAACGAAGACGAAATTTGATATTTGGCAATTCGCGGAATCGT
GCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAATTTCA
C
Found at i:51248319 original size:132 final size:132
Alignment explanation
Indices: 51248100--51248337 Score: 295
Period size: 132 Copynumber: 1.8 Consensus size: 132
51248090 CAATACTCGG
* * *
51248100 TGTTTGACGATTCGGGAATCATGCCCTATCGCGCTGGGTTGTGATTTCTCGTTTGGTCAAAACAA
1 TGTTTGACGATTCGAGAATCATGCCCTATCGCGCTGAGTTGCGATTTCTCGTTTGGTCAAAACAA
* * * *
51248165 TCGAATATTCCTTTAGGTTTTCACTCA-TTTTTTTAAGAAAACATTTTAAAACGAAGGTGATGTC
66 TCGAAGATTCCCTTAGGGTTTCACTCACATTTTTTAA-AAAACATTTTAAAACGAAGGTGATGTC
51248229 CAA
130 CAA
* * * *
51248232 TGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGAGTTGCGCATTT-TC-TTTGGTTCAAAAC
1 TGTTTGACGATTCGAGAATCATGCCCTATCGCGCTGAGTTGCG-ATTTCTCGTTTGG-TCAAAAC
* *
51248295 AATTGAAGA-TCCCTTCGGAGTTTCACTCACATTTTTTAAAAAA
64 AATCGAAGATTCCCTTAGG-GTTTCACTCACATTTTTTAAAAAA
51248338 TCTAAAAAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
131 12 0.13
132 65 0.73
133 12 0.13
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (132 bp):
TGTTTGACGATTCGAGAATCATGCCCTATCGCGCTGAGTTGCGATTTCTCGTTTGGTCAAAACAA
TCGAAGATTCCCTTAGGGTTTCACTCACATTTTTTAAAAAACATTTTAAAACGAAGGTGATGTCC
AA
Found at i:51250558 original size:6 final size:6
Alignment explanation
Indices: 51250549--51250580 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
51250539 CACCGTAATG
*
51250549 GTAACA GTAACA GTAGCA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
51250581 CAGGTACAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:51254852 original size:21 final size:21
Alignment explanation
Indices: 51254826--51254882 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
51254816 TAATCAGAAT
51254826 ACGACACATAAAGTGCATAAA
1 ACGACACATAAAGTGCATAAA
* * *
51254847 ACGACACA-CAAGATGCCTAAT
1 ACGACACATAAAG-TGCATAAA
51254868 ACGACACATAAAGTG
1 ACGACACATAAAGTG
51254883 TCTGATCGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.47, C:0.23, G:0.16, T:0.14
Consensus pattern (21 bp):
ACGACACATAAAGTGCATAAA
Found at i:51259545 original size:23 final size:23
Alignment explanation
Indices: 51259519--51259564 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
51259509 ATCATGGTTG
51259519 AATTTGGATGATAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
51259542 AATTTGGATGATAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
51259565 CTAGATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (23 bp):
AATTTGGATGATAATCATCTCTT
Found at i:51261553 original size:30 final size:30
Alignment explanation
Indices: 51261493--51261553 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
51261483 TAGTTATGTT
* * *
51261493 TGTGAAAAGTTAATTGCTTAATAGATTAGC
1 TGTGAAAAGTTAATTACTTAACAGACTAGC
*
51261523 TGTGAAAAGCTT-ATTACTTAACAGCCTAGC
1 TGTGAAAAG-TTAATTACTTAACAGACTAGC
51261553 T
1 T
51261554 TTCAAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (30 bp):
TGTGAAAAGTTAATTACTTAACAGACTAGC
Found at i:51261942 original size:58 final size:57
Alignment explanation
Indices: 51261888--51262050 Score: 142
Period size: 58 Copynumber: 2.9 Consensus size: 57
51261878 TTTTTATAGT
*
51261888 ATTATATATTATGATTT-TTTAATTCATA-TAATAATAATTATATTAAGAATTTTATTAA
1 ATTATATATTAT--TTTATTAAATT-ATATTAATAATAATTATATTAAGAATTTTATTAA
* * **
51261946 ATTATATATTATTTTATTAAATTATATTTAATAATAATTATGTTAA-AATATGGTTAA
1 ATTATATATTATTTTATTAAATTATA-TTAATAATAATTATATTAAGAATTTTATTAA
* * * * *
51262003 AATATTTATT-TTTTATT-AATTTTTTTAACAATAATCT-TATTAA-AATTT
1 ATTATATATTATTTTATTAAATTATATTAATAATAAT-TATATTAAGAATTT
51262051 AATAACAATA
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
54 19 0.21
55 6 0.07
56 13 0.15
57 22 0.25
58 29 0.33
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (57 bp):
ATTATATATTATTTTATTAAATTATATTAATAATAATTATATTAAGAATTTTATTAA
Found at i:51262046 original size:54 final size:57
Alignment explanation
Indices: 51261920--51262048 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 57
51261910 TTCATATAAT
* ** * *
51261920 AATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATTTAAT
1 AATAATTATATTAA-AATATGGTTAAAATATATATTATTTTATTAAATTATATTTAAC
* * *
51261978 AATAATTATGTTAAAATATGGTTAAAATATTTATT-TTTTATT-AATT-TTTTTAAC
1 AATAATTATATTAAAATATGGTTAAAATATATATTATTTTATTAAATTATATTTAAC
51262032 AATAATCT-TATTAAAAT
1 AATAAT-TATATTAAAAT
51262049 TTAATAACAA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
54 20 0.33
55 5 0.08
56 7 0.11
57 16 0.26
58 13 0.21
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (57 bp):
AATAATTATATTAAAATATGGTTAAAATATATATTATTTTATTAAATTATATTTAAC
Found at i:51262245 original size:16 final size:16
Alignment explanation
Indices: 51262226--51262256 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51262216 ATTACAGTTC
51262226 TATTCAATTACAGCCT
1 TATTCAATTACAGCCT
*
51262242 TATTCCATTACAGCC
1 TATTCAATTACAGCC
51262257 AACCAAACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.35
Consensus pattern (16 bp):
TATTCAATTACAGCCT
Found at i:51262604 original size:24 final size:25
Alignment explanation
Indices: 51262576--51262636 Score: 76
Period size: 23 Copynumber: 2.6 Consensus size: 25
51262566 AGTAAATTAG
*
51262576 TTATTTTATTACAAGTGTA-C-ATA
1 TTATTTTATTACAAATGTACCAATA
51262599 TCTA-TTTATTACAAATGTACCAATA
1 T-TATTTTATTACAAATGTACCAATA
51262624 TT-TTTTATTACAA
1 TTATTTTATTACAA
51262637 TCGTCATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
23 15 0.45
24 14 0.42
25 4 0.12
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.48
Consensus pattern (25 bp):
TTATTTTATTACAAATGTACCAATA
Found at i:51262884 original size:3 final size:3
Alignment explanation
Indices: 51262876--51262949 Score: 82
Period size: 3 Copynumber: 25.3 Consensus size: 3
51262866 ATATGAAACC
* **
51262876 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- TTA AT- ATA A-A ACC
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
51262921 ATA CTA ATA ATTA ATA ATA ATA ATA ATA A
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA A
51262950 AATCTTAGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
2 5 0.08
3 52 0.87
4 3 0.05
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:51265213 original size:14 final size:14
Alignment explanation
Indices: 51265194--51265223 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
51265184 TTATATCGAG
51265194 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
51265208 ACCAATCCAATTCA
1 ACCAATCCAAATCA
51265222 AC
1 AC
51265224 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:51276498 original size:19 final size:17
Alignment explanation
Indices: 51276466--51276508 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
51276456 CTACTTGTGC
*
51276466 ATTTATGTTTTGAACTTG
1 ATTTATGTTATGAA-TTG
51276484 ATTTGATGTTATGAATTG
1 ATTT-ATGTTATGAATTG
*
51276502 AATTATG
1 ATTTATG
51276509 ATAATACCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (17 bp):
ATTTATGTTATGAATTG
Found at i:51279565 original size:34 final size:32
Alignment explanation
Indices: 51279516--51279593 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 32
51279506 ATAAACATGA
* *
51279516 TAAAAAAAATAAATTA-TTCGATACACTCATTTTT
1 TAAAATAAATAAATTATTTC-ATA-AAT-ATTTTT
51279550 T-AAATAAATATAATTATTTCATAAATATTTTT
1 TAAAATAAATA-AATTATTTCATAAATATTTTT
51279582 TAAAATAAATAA
1 TAAAATAAATAA
51279594 TATAACTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
32 8 0.21
33 19 0.49
34 9 0.23
35 3 0.08
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (32 bp):
TAAAATAAATAAATTATTTCATAAATATTTTT
Found at i:51283696 original size:49 final size:49
Alignment explanation
Indices: 51283638--51283739 Score: 204
Period size: 49 Copynumber: 2.1 Consensus size: 49
51283628 AAATGAAGTC
51283638 ATAATGCTAAAATTCATCACCTTTATATCGTTAAAGAAATCAGCATCCA
1 ATAATGCTAAAATTCATCACCTTTATATCGTTAAAGAAATCAGCATCCA
51283687 ATAATGCTAAAATTCATCACCTTTATATCGTTAAAGAAATCAGCATCCA
1 ATAATGCTAAAATTCATCACCTTTATATCGTTAAAGAAATCAGCATCCA
51283736 ATAA
1 ATAA
51283740 AGTCAACCCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (49 bp):
ATAATGCTAAAATTCATCACCTTTATATCGTTAAAGAAATCAGCATCCA
Found at i:51284929 original size:45 final size:44
Alignment explanation
Indices: 51284880--51284972 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 44
51284870 TCTTAGGTTA
51284880 AATTTGATATTTAATTTTAATCTTTATATTTTTATAATATTATT
1 AATTTGATATTTAATTTTAATCTTTATATTTTTATAATATTATT
*
51284924 CAATTTGATATTTAATTTTAATTTTTATATTTTTATAATATTATT
1 -AATTTGATATTTAATTTTAATCTTTATATTTTTATAATATTATT
51284969 AATT
1 AATT
51284973 AATCTAGATA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 4 0.09
45 43 0.91
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (44 bp):
AATTTGATATTTAATTTTAATCTTTATATTTTTATAATATTATT
Found at i:51285071 original size:24 final size:22
Alignment explanation
Indices: 51285038--51285081 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
51285028 AATTTAAAAA
*
51285038 TAAAATTATAAATTATAAAAATCT
1 TAAAAATATAAA-TA-AAAAATCT
51285062 TAAAAATATAAATAAAAAAT
1 TAAAAATATAAATAAAAAAT
51285082 TAGATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAAAATATAAATAAAAAATCT
Found at i:51285074 original size:15 final size:14
Alignment explanation
Indices: 51285028--51285100 Score: 53
Period size: 13 Copynumber: 5.1 Consensus size: 14
51285018 GATTAAATCT
51285028 AATTTAAAAATA-A
1 AATTTAAAAATATA
* *
51285041 AATTATAAATTATAAA
1 AATT-TAAA-AATATA
51285057 AATCTTAAAAATATA
1 AAT-TTAAAAATATA
*
51285072 AA-TAAAAAAT-TA
1 AATTTAAAAATATA
*
51285084 GATTTTAAAAATATA
1 -AATTTAAAAATATA
51285099 AA
1 AA
51285101 AATTAAAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 13
0.70 0.11 0.20
Matches are distributed among these distances:
12 2 0.04
13 12 0.26
14 12 0.26
15 11 0.24
16 8 0.17
17 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (14 bp):
AATTTAAAAATATA
Found at i:51285805 original size:20 final size:20
Alignment explanation
Indices: 51285782--51285823 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
51285772 TTTTTTTAAA
* *
51285782 TTAAAAATTATTAAAATTAT
1 TTAAAAAGTATGAAAATTAT
*
51285802 TTAAAAAGTATGAAATTTAT
1 TTAAAAAGTATGAAAATTAT
51285822 TT
1 TT
51285824 TTTAAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
TTAAAAAGTATGAAAATTAT
Found at i:51286104 original size:16 final size:16
Alignment explanation
Indices: 51286065--51286104 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
51286055 TATTTAGTTC
51286065 GCTGTAATAAAATAGA
1 GCTGTAATAAAATAGA
* * *
51286081 ACTATAATATAATAGA
1 GCTGTAATAAAATAGA
51286097 GCTGTAAT
1 GCTGTAAT
51286105 CATTAATTTA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (16 bp):
GCTGTAATAAAATAGA
Found at i:51305069 original size:86 final size:85
Alignment explanation
Indices: 51304969--51305137 Score: 232
Period size: 86 Copynumber: 2.0 Consensus size: 85
51304959 GTTTTTCTTA
* * * *
51304969 TTTTTTCATTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAGGCCC-TCAAATTTCTTTA
1 TTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAGACCCTTAAAATTT-TTCA
*
51305033 AAAAAAGCAATTAAGCCCCTAT
65 AAAAAA-CAATTAAACCCCTAT
* * *
51305055 TTTTTTCACTCAATTGAGTACTTGAACTTTCAAAATGCATCAGAAAGACCCTTAAAATTTTTCAA
1 TTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAGACCCTTAAAATTTTTCAA
*
51305120 ATAAACAATTAAACCCCT
66 AAAAACAATTAAACCCCT
51305138 GCTCATATTA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
85 12 0.16
86 54 0.74
87 7 0.10
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (85 bp):
TTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAGACCCTTAAAATTTTTCAA
AAAAACAATTAAACCCCTAT
Found at i:51305587 original size:86 final size:88
Alignment explanation
Indices: 51305497--51305702 Score: 265
Period size: 88 Copynumber: 2.3 Consensus size: 88
51305487 TAAGAACAGG
* * **
51305497 GGCTTAATTGCTTTTTTAAAAAATTTTGA-GGT-TTTTTTATGTATTTTGAAAGTTTAAGTACCC
1 GGCTTAATTGCTTTTTTAAAAAAGTTTGAGGGTCTTTTTGATACATTTTGAAAGTTTAAGTACCC
*
51305560 AATTGAGTG-AATAAAAAAGTAGA
66 AATTGAGTGAAAAAAAAAAG-AGA
* * * *
51305583 GGCTTAATTGTTTTTTTGAAAAAGTTTGAGGGTCTTTTTGATACATTTTGAAAGTTTAAGTGCTC
1 GGCTTAATTGCTTTTTTAAAAAAGTTTGAGGGTCTTTTTGATACATTTTGAAAGTTTAAGTACCC
51305648 AATTGAGTGAAAAAAAAAAGAGA
66 AATTGAGTGAAAAAAAAAAGAGA
* *
51305671 GGCTTAATTACTTTTTAAAAAAAAAGTTTGAG
1 GGCTTAATTGCTTTTT--TAAAAAAGTTTGAG
51305703 AAATTTTTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
86 26 0.25
87 3 0.03
88 52 0.51
89 9 0.09
90 12 0.12
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (88 bp):
GGCTTAATTGCTTTTTTAAAAAAGTTTGAGGGTCTTTTTGATACATTTTGAAAGTTTAAGTACCC
AATTGAGTGAAAAAAAAAAGAGA
Found at i:51306217 original size:12 final size:13
Alignment explanation
Indices: 51306189--51306218 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
51306179 AAAATACAAA
51306189 TAAAAGAAAACAT
1 TAAAAGAAAACAT
51306202 TAAAAGAAAA-AT
1 TAAAAGAAAACAT
51306214 TAAAA
1 TAAAA
51306219 TGTAAGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (13 bp):
TAAAAGAAAACAT
Found at i:51310297 original size:13 final size:13
Alignment explanation
Indices: 51310279--51310310 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
51310269 ATAGTTTAAT
51310279 AATAAAATAAAGA
1 AATAAAATAAAGA
51310292 AATAAAATAAAGA
1 AATAAAATAAAGA
51310305 AATAAA
1 AATAAA
51310311 TGAAATGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:51311048 original size:83 final size:82
Alignment explanation
Indices: 51310957--51311122 Score: 298
Period size: 83 Copynumber: 2.0 Consensus size: 82
51310947 AGAAACAGCG
51310957 TAAGCAATTGAATTGTAAATTATGAGATATAATAAATTTTGTGAA-ACAAGGTCAGAATGAATTC
1 TAAGCAATTGAATTGTAAATTATGAGATATAATAAATTTTGT-AAGACAAGGTCAGAATGAATTC
51311021 GGGTTCCCCTGTTCTGANA
65 GGGTTCCCCTGTTCTGA-A
*
51311040 TAAGCAATTGAATTGTAAATTATGAGATATAATGAATTTTGTAAGACAAGGTCAGAATGAATTCG
1 TAAGCAATTGAATTGTAAATTATGAGATATAATAAATTTTGTAAGACAAGGTCAGAATGAATTCG
51311105 GGTTCCCCTGTTCTGAA
66 GGTTCCCCTGTTCTGAA
51311122 T
1 T
51311123 TTGGAAAATC
Statistics
Matches: 81, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
82 4 0.05
83 77 0.95
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (82 bp):
TAAGCAATTGAATTGTAAATTATGAGATATAATAAATTTTGTAAGACAAGGTCAGAATGAATTCG
GGTTCCCCTGTTCTGAA
Found at i:51311143 original size:83 final size:83
Alignment explanation
Indices: 51310973--51311143 Score: 209
Period size: 83 Copynumber: 2.1 Consensus size: 83
51310963 ATTGAATTGT
51310973 AAATTATGAGATATAATAAATTTTGTGAAACAAGGTCAGAATGAATTCGGGTTCCCCTGTTCTGA
1 AAATTATGAGATATAATAAATTTTGTGAAACAAGGTCAGAATGAATTCGGGTTCCCCTGTTCTGA
* * * * ****
51311038 NATAAGCAATTGAATTGT
66 AATAAGAAAATCAACAAA
*
51311056 AAATTATGAGATATAATGAATTTTGT-AAGACAAGGTCAGAATGAATTCGGGTTCCCCTGTTCTG
1 AAATTATGAGATATAATAAATTTTGTGAA-ACAAGGTCAGAATGAATTCGGGTTCCCCTGTTCTG
* ** *
51311120 AATTTGGAAAATCACCAAA
65 AAATAAGAAAATCAACAAA
51311139 AAATT
1 AAATT
51311144 GGAGAAAAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
82 2 0.03
83 72 0.97
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (83 bp):
AAATTATGAGATATAATAAATTTTGTGAAACAAGGTCAGAATGAATTCGGGTTCCCCTGTTCTGA
AATAAGAAAATCAACAAA
Done.