Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 171 of 185
Found at i:51311794 original size:18 final size:19
Alignment explanation
Indices: 51311773--51311813 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
51311763 AATGAAATGA
51311773 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
51311791 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
51311810 GAAA
1 GAAA
51311814 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:51317590 original size:19 final size:18
Alignment explanation
Indices: 51317566--51317611 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
51317556 CTTTTTTAGT
*
51317566 TTTGCATTCATCTCATGCA
1 TTTGCATTCATCGCAT-CA
51317585 TTTGCATTTCATCGCATCA
1 TTTGCA-TTCATCGCATCA
*
51317604 TGTGCATT
1 TTTGCATT
51317612 AAATTTCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 13 0.54
20 9 0.38
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (18 bp):
TTTGCATTCATCGCATCA
Found at i:51325894 original size:44 final size:43
Alignment explanation
Indices: 51325840--51326027 Score: 107
Period size: 44 Copynumber: 4.3 Consensus size: 43
51325830 TGAAGTTGGC
51325840 AGTGGAGCAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGACTGAAAATT-TAGATCTTATCTCCCTAAGCAGT
* * ** * *
51325884 AGTGGAGCAGA-TCGAAGACTGCGAATCTTATCT--CTATGCATCGAA
1 AGTGGAGCAGACT-GAAAATTTAG-ATCTTATCTCCCTAAGCA--G-T
* * * * ** ** *
51325929 AATGGAGCAGATTTAAGCCA-TTA-CCCTTATCTCCCTGAAGTTGC
1 AGTGGAGCAGACTGAA--AATTTAGATCTTATCTCCCT-AAGCAGT
*
51325973 AGCGGAGCAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGACTGAAAATT-TAGATCTTATCTCCCTAAGCAGT
51326017 AGTGGAGCAGA
1 AGTGGAGCAGA
51326028 TCGAAGACTG
Statistics
Matches: 102, Mismatches: 28, Indels: 28
0.65 0.18 0.18
Matches are distributed among these distances:
42 7 0.07
43 3 0.03
44 61 0.60
45 24 0.24
46 4 0.04
47 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (43 bp):
AGTGGAGCAGACTGAAAATTTAGATCTTATCTCCCTAAGCAGT
Found at i:51325957 original size:134 final size:134
Alignment explanation
Indices: 51325713--51326104 Score: 624
Period size: 133 Copynumber: 2.9 Consensus size: 134
51325703 GATGGTGTAA
** * * * * * *
51325713 CAGACTGAAAATTGCAGATATTATCTCCCTAAGTAGTAGTAGAACAGATCGAAGACGGTGAATCT
1 CAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGAATCT
* * * ** * * *
51325778 TATCTCCATGTATAGGCAATAGAGCAGATTTAAGCCACTAGCCTTATCTCCCTGAAGTTGGCAGT
66 TATCTCTATGCATCGAAAATGGAGCAGATTTAAGCCATTAGCCTTATCTCCCTGAAGTTGGCAGC
51325843 GGAG
131 GGAG
51325847 CAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGAATCT
1 CAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGAATCT
*
51325912 TATCTCTATGCATCGAAAATGGAGCAGATTTAAGCCATTACCCTTATCTCCCTGAAGTT-GCAGC
66 TATCTCTATGCATCGAAAATGGAGCAGATTTAAGCCATTAGCCTTATCTCCCTGAAGTTGGCAGC
51325976 GGAG
131 GGAG
51325980 CAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGAATCT
1 CAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGAATCT
51326045 TATCTCTATGCATCGAAAATGGAGCAGATTTAAGCCATTAGCCTTATCTCCCTGAAGTTG
66 TATCTCTATGCATCGAAAATGGAGCAGATTTAAGCCATTAGCCTTATCTCCCTGAAGTTG
51326105 TAGTGTAGTA
Statistics
Matches: 239, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
133 131 0.55
134 108 0.45
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (134 bp):
CAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGAATCT
TATCTCTATGCATCGAAAATGGAGCAGATTTAAGCCATTAGCCTTATCTCCCTGAAGTTGGCAGC
GGAG
Found at i:51326137 original size:177 final size:177
Alignment explanation
Indices: 51325954--51326513 Score: 838
Period size: 177 Copynumber: 3.2 Consensus size: 177
51325944 AGCCATTACC
*
51325954 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAAATTATAGATCTTATCTCCCTAAGCAGTAG
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAG
* * * *
51326019 TGGAGCAGATCGAAGACTGCGAATCTTATCTCTATGCATC-GAAAATGGAGCAGATTTAAGCCAT
66 TGGAGCAGATCGAAGACTGCGAATCTTATCTCCATGTATCAG-CAATGGAGCAGATTTAAGCCAC
*
51326083 TAGCCTTATCTCCCTGAAGTTGTAGTGTAGTAGGCTCAAGATACAAGT
130 TAGCCTTATCTCCCTGAAGTTGTAGTGGAGTAGGCTCAAGATACAAGT
* *
51326131 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAAATTGCAGATCTTATCTTCCTAAGCAGTAG
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAG
* * * * *
51326196 TGGAGCAGGTCGAAGACGGCAAATCTTATCTCCATGTATCATCAATAGAGCAGA-TTATAGCCAC
66 TGGAGCAGATCGAAGACTGCGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTA-AGCCAC
51326260 TAGCCTTATCTCCCTGAAGTTGTAGTGGAGTAGGCTCAAGATACAAGT
130 TAGCCTTATCTCCCTGAAGTTGTAGTGGAGTAGGCTCAAGATACAAGT
* * *
51326308 CTTATCTCCCTGAAGTGGCAGCGGAGCAGACTAAAAATTACAGATCTTATCTCCCTCAGCAGTAG
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAG
*** *
51326373 TGGAATTGATCGAAGA-TGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCAC
66 TGGAGCAGATCGAAGACT-GCGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCAC
* * *
51326437 TAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGATACAAGT
130 TAGCCTTATCTCCCTGAAGTTGTAGTGGAGTAGGCTCAAGATACAAGT
* * *
51326485 CTTATCTCCTTGAGGTTGCAGTGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAG
51326514 GTTGAAGTTA
Statistics
Matches: 345, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
176 3 0.01
177 339 0.98
178 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (177 bp):
CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTGCGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACT
AGCCTTATCTCCCTGAAGTTGTAGTGGAGTAGGCTCAAGATACAAGT
Found at i:51326466 original size:44 final size:44
Alignment explanation
Indices: 51326418--51326513 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
51326408 GTATCAGCAA
* * * *
51326418 TGGAGCAGATTTAAGCCACTAGCCTTATCTCCCTGAAGTTGCAG
1 TGGAGCAGACTCAAGACACAAGCCTTATCTCCCTGAAGTTGCAG
* * * *
51326462 TGGAGCAGACTCAAGATACAAGTCTTATCTCCTTGAGGTTGCAG
1 TGGAGCAGACTCAAGACACAAGCCTTATCTCCCTGAAGTTGCAG
51326506 TGGAGCAG
1 TGGAGCAG
51326514 GTTGAAGTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (44 bp):
TGGAGCAGACTCAAGACACAAGCCTTATCTCCCTGAAGTTGCAG
Found at i:51326841 original size:29 final size:31
Alignment explanation
Indices: 51326808--51326866 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
51326798 CGAACGGCTT
*
51326808 TTCTCCACAC-C-AGCACACCTACGAATGGA
1 TTCTCCACACGCTAGCACACCCACGAATGGA
* *
51326837 TTCTCCCCACGCTAGCACACCCATGAATGG
1 TTCTCCACACGCTAGCACACCCACGAATGG
51326867 CTCCTCCTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.36
30 1 0.04
31 15 0.60
ACGTcount: A:0.27, C:0.39, G:0.15, T:0.19
Consensus pattern (31 bp):
TTCTCCACACGCTAGCACACCCACGAATGGA
Found at i:51341990 original size:38 final size:38
Alignment explanation
Indices: 51341929--51342041 Score: 154
Period size: 38 Copynumber: 2.9 Consensus size: 38
51341919 ATTTGATGTG
*
51341929 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
51341969 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * *
51342007 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
51342042 TTATATTCGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 54 0.81
39 5 0.07
40 8 0.12
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:51342042 original size:38 final size:38
Alignment explanation
Indices: 51341945--51342052 Score: 162
Period size: 38 Copynumber: 2.8 Consensus size: 38
51341935 GGCTTAAAGA
** *
51341945 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
51341983 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * *
51342021 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
51342053 CCTTCGTGCC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:51342093 original size:43 final size:43
Alignment explanation
Indices: 51342045--51342249 Score: 313
Period size: 43 Copynumber: 4.8 Consensus size: 43
51342035 GCTGGTATTA
51342045 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
51342088 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
51342131 TATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGTTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * **
51342174 TATTTGGGCCTTCGTGCCTAGCA-GATGTAATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCT-TCGTGCCGGTGATGTG
*
51342217 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
51342250 TTAGCAGACG
Statistics
Matches: 147, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
42 2 0.01
43 143 0.97
44 2 0.01
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:51342247 original size:16 final size:16
Alignment explanation
Indices: 51342226--51342256 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51342216 GTATTTGGGC
51342226 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
*
51342242 CTTCGTGCTTAGCAG
1 CTTCGTGCCTAGCAG
51342257 ACGTAATGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.29
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:51345796 original size:47 final size:45
Alignment explanation
Indices: 51345725--51346084 Score: 271
Period size: 47 Copynumber: 7.7 Consensus size: 45
51345715 TGATTTGTGC
*
51345725 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATA-TATGAGA
* * *
51345771 GCTAGTGTAAGATCATGTCTGGGACATGGCATC-GGCATCCAGACT-AGG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAT--ATA-TGAGA
*
51345819 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATA-TATGAGA
* * * *
51345865 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGAGATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CATATATGAGA
* * * * * *
51345913 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTTGGCAGA-GATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT---ATATGAGA
* * * * * * * * *
51345960 GCCAGTGTAAGACGTGTTTGGGACACGCATC-GGC-TAAAAGTTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATATG-AGA
* *
51346004 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACGTATATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-C--ATATATGAGA
*
51346052 GCCAGTGTAAGATCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
51346085 GACAATTTAT
Statistics
Matches: 248, Mismatches: 43, Indels: 42
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 26 0.10
45 5 0.02
46 42 0.17
47 88 0.35
48 57 0.23
49 23 0.09
50 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATATGAGA
Found at i:51345890 original size:94 final size:93
Alignment explanation
Indices: 51345725--51346085 Score: 392
Period size: 94 Copynumber: 3.9 Consensus size: 93
51345715 TGATTTGTGC
* *
51345725 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGAGAGCTAGTGTAAGATCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGATCATGTC
* *
51345790 TGGGACATGGCATCGGCATCCAGACTAGG
66 TGGGACATGGCATCGGCAT-CAGAATAGT
* * *
51345819 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGATCATGTC
* *
51345884 TAGGACATGGCATCAGCA-CAGAGATGAGT
66 TGGGACATGGCATCGGCATCAGA-AT-AGT
* * * * *** *
51345913 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTTGGCA-GAGATAGCCAGTGTAAGA-CGTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAG--AGCCAGTGTAAGATCATG
* * * *
51345976 TTTGGGACA-CGCATCGGC-T-AAAAGTTGT
64 TCTGGGACATGGCATCGGCATCAGAA-TAGT
* * *
51346004 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACGTATATATGAAAGCCAGTGTAAGATCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CATAT-TATGAGAGCCAGTGTAAGATCATG
51346069 TCTGGGACATGGCATCG
64 TCTGGGACATGGCATCG
51346086 ACAATTTATC
Statistics
Matches: 221, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
91 33 0.15
92 22 0.10
93 23 0.10
94 131 0.59
95 12 0.05
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGATCATGTC
TGGGACATGGCATCGGCATCAGAATAGT
Found at i:51345978 original size:141 final size:137
Alignment explanation
Indices: 51345725--51346085 Score: 408
Period size: 141 Copynumber: 2.6 Consensus size: 137
51345715 TGATTTGTGC
*
51345725 GCTAGTGTAAGACATGTCTAGGACATGCATCAGC-CATATTATGAGAGCTAGTGTAAGATCATGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCACATA-TATGAGAGCCAGTGTAAGATCATGT
* * *
51345789 CTGGGACATGGCATCGGCATCCAGACTAGGGCTAGTGTAAGACATGTTTGGGACATGCATCAGCC
65 CTGGGACATGGCATCGGCATCCAGAATA-GGCCAGTGTAAGACATGTTTGGGACACGCATC-GCC
**
51345854 ATATTA-TGAGA
128 -TAAAAGT-AGA
* * * *
51345865 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGAGATGAGTGCCAGAGTAAGA-CATG
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCACATATATGAGAGCCAGTGTAAGATCATG
* * *
51345929 TCTGGGACAT-GCATCGGCCTTGGCAGAGATA-GCCAGTGTAAGACGTGTTTGGGACACGCATCG
64 TCTGGGACATGGCATCGG-CAT-CCAGA-ATAGGCCAGTGTAAGACATGTTTGGGACACGCATCG
* * *
51345992 GCTAAAAGTTGT
126 CCTAAAAGTAGA
* * *
51346004 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACGTATATATGAAAGCCAGTGTAAGATCATG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCAC--ATATATGAGAGCCAGTGTAAGATCATG
51346069 TCTGGGACATGGCATCG
64 TCTGGGACATGGCATCG
51346086 ACAATTTATC
Statistics
Matches: 187, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
137 9 0.05
138 13 0.07
139 33 0.18
140 36 0.19
141 64 0.34
142 27 0.14
143 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (137 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCACATATATGAGAGCCAGTGTAAGATCATGTC
TGGGACATGGCATCGGCATCCAGAATAGGCCAGTGTAAGACATGTTTGGGACACGCATCGCCTAA
AAGTAGA
Found at i:51361863 original size:46 final size:45
Alignment explanation
Indices: 51361715--51361979 Score: 178
Period size: 46 Copynumber: 5.7 Consensus size: 45
51361705 TTTGTACGCT
* * * * *
51361715 AGTGTAAGACATGTCTGGGACATACATCAGC-CATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTC-CA-GACGAGAGCC
* *
51361761 AGTGTAAGATCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCCAGACGAGAGCC
*
51361809 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGGCAGA-GATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTC--CAGACGAGAGCC
* * * * * * *
51361855 AGTATAAGACGTGTCTGGGACACGCATCGGCT-AAGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCCAGACG-AGAGCC
* * * * * * *
51361899 AGTGTAAGATATGTCTGGGAAATACATCAGCACACATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTC-C--AGACGAGAGCC
*
51361947 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
51361980 AATTTATCCC
Statistics
Matches: 169, Mismatches: 36, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.02
44 26 0.15
45 2 0.01
46 50 0.30
47 32 0.19
48 35 0.21
49 13 0.08
50 7 0.04
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCCAGACGAGAGCC
Found at i:51364071 original size:47 final size:47
Alignment explanation
Indices: 51363962--51364072 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
51363952 CCGGGATAAG
* *
51363962 CACATAGTGCTTTATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
51364009 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
51364056 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
51364073 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:51364845 original size:4 final size:4
Alignment explanation
Indices: 51364836--51364864 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
51364826 CCCTTTTCTA
51364836 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
51364865 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:51367218 original size:16 final size:17
Alignment explanation
Indices: 51367199--51367231 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51367189 CAATAGTCAT
51367199 CAAATTT-AAAAAAAAA
1 CAAATTTCAAAAAAAAA
51367215 CAAATTTCAAAAAAAAA
1 CAAATTTCAAAAAAAAA
51367232 ATCAAATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (17 bp):
CAAATTTCAAAAAAAAA
Found at i:51367390 original size:33 final size:34
Alignment explanation
Indices: 51367353--51367418 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
51367343 AAAGGCAGCC
51367353 AAAAAGAAAAAAAAAGTAAAAA-AAT-AAACAAAT
1 AAAAAGAAAAAAAAA-TAAAAACAATAAAACAAAT
* *
51367386 AAAAATAAAAAAGAATAAAAACAATAAAACAAA
1 AAAAAGAAAAAAAAATAAAAACAATAAAACAAA
51367419 GGTCATGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 6 0.21
33 16 0.55
34 7 0.24
ACGTcount: A:0.82, C:0.05, G:0.05, T:0.09
Consensus pattern (34 bp):
AAAAAGAAAAAAAAATAAAAACAATAAAACAAAT
Found at i:51367411 original size:9 final size:8
Alignment explanation
Indices: 51367361--51367414 Score: 56
Period size: 8 Copynumber: 6.5 Consensus size: 8
51367351 CCAAAAAGAA
51367361 AAAAAAAGT
1 AAAAAAA-T
51367370 AAAAAAAT
1 AAAAAAAT
*
51367378 AAACAAAT
1 AAAAAAAT
51367386 AAAAATAA-
1 AAAAA-AAT
*
51367394 AAAAGAAT
1 AAAAAAAT
51367402 AAAAACAAT
1 AAAAA-AAT
51367411 AAAA
1 AAAA
51367415 CAAAGGTCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
7 2 0.05
8 20 0.53
9 16 0.42
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:51372064 original size:171 final size:171
Alignment explanation
Indices: 51371775--51372758 Score: 1209
Period size: 171 Copynumber: 5.7 Consensus size: 171
51371765 GTGAATTCAT
* ** *
51371775 AGATCTCATCTCCCTAAGATAGTAGTGGAGCAGATCGAAGACAATGAAACTTATCTT-CTAGAGG
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTA-AGG
* * * * *
51371839 TAGTAGAGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAG
65 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* * *
51371904 ATTGTAGTCTTATCTTCTTGAGGTAGTAAGGAAGTAAACTAA
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
* * *
51371946 AGATCTCATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTTCTAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
* *
51372011 GGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
*
51372076 TTGTAGTCTTGTCTTCCTGAGGTAGCAAGGAAGCAAACTAA
131 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
* * ** *
51372117 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTTAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
* * * * *
51372182 AGCAGGGGAGCAGATTTTAACCACTAGCCTTATCTCTCTAAAGTAGCAAGAGAACAGGTTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
** * *
51372247 TTGTAGTCTTATCTTCCTGAGGTATTAAGGAAGCTGACTGAAGATTGA
131 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAA---G-C--AA-ACTAA
* * *
51372295 AGATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
* * * **
51372359 AGTAGGGAAGCAGATTTTATCCATTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
*
51372424 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGA
131 TTGTAGTCTTATCTTCCTGAGGTAGC----AAGGAAGCAAACT--A-A
* * * * *
51372472 TTGTAGACCTTATCTCCCTAA-ATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTG
1 ----AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTA
* *
51372536 AGGTAGCAGGGGAGCATATTTTAGCCACCAGCCTTACCTCTCTGAGGTAGCAAGAGAGCAGGTTG
62 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
*
51372601 AAGATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAACTAA
127 AAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
* * * * * ** * *
51372646 AGATCTCATCGCCCTAAGATAGCAATGGAGTAGATCAAAGACGGCGAATCTTGTCTTCCCAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
** * * *
51372711 AGCAGGGGAGCAGATTTTAGATAGCAGCCTTATCTCCCTGAAGTAGCA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
51372759 GTGGGGAAGA
Statistics
Matches: 707, Mismatches: 85, Indels: 42
0.85 0.10 0.05
Matches are distributed among these distances:
170 14 0.02
171 377 0.53
172 3 0.00
174 4 0.01
175 3 0.00
177 138 0.20
178 20 0.03
181 148 0.21
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (171 bp):
AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
Found at i:51372435 original size:44 final size:44
Alignment explanation
Indices: 51372039--51372633 Score: 194
Period size: 44 Copynumber: 13.5 Consensus size: 44
51372029 AGCCACCAGC
*
51372039 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* * *
51372083 CTTGTCTTCCTGAGGTAGCAAG-GAAGCAAACT-AA-A--G-A-T
1 CTTATCTTCCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAGT
* * * * * * * * *
51372121 CTCATCTCCCTGAGATAGC-AGTGGAGCAGATCGAAAATGGCGAAT
1 CTTATCTTCCTGAGGTAGCAAG-AGAGCAGATTGAAGATTG-TAGT
* * * * * * * *
51372166 CTTATCTTCTTAAGGTAGCAGGGGAGCAGATTTTAACCA--CTAGC
1 CTTATCTTCCTGAGGTAGCAAGAGAGCAGA-TTGAA-GATTGTAGT
* * * *
51372210 CTTATC-TCTCTAAAGTAGCAAGAGAACAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
** * * *
51372254 CTTATCTTCCTGAGGTATTAAG-GAAGCTGACTGAAGATTGAAGAT
1 CTTATCTTCCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAG-T
* * * * *
51372299 CTTATCTCCCTAAGCAGTAG--TG-GAGCAGATCGAAGA-TGATGAAT
1 CTTATCTTCCTGAG--GTAGCAAGAGAGCAGATTGAAGATTG-T-AGT
* * * * ** *
51372343 CTTATCTTCCTAAGGTAG-TAGGGAAGCAGATTTTATCCA-T-TAGC
1 CTTATCTTCCTGAGGTAGCAAGAG-AGCAGA-TTGA-AGATTGTAGT
*
51372387 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* *
51372431 CTTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGTAGAC
1 CTTATCTTCCTGAGGTAGCAA-G-A-G-AGCAGATTGAAGATTGTAG-T
* ** * * * * *
51372480 CTTATCTCCCT-AAATAG-TAGTGGAGCAGATCGAAGATGGTGAAT
1 CTTATCTTCCTGAGGTAGCAAG-AGAGCAGATTGAAGATTGT-AGT
* * * ** ***** *
51372524 CTTATCTTCCTGAGGTAGCAGGGGAGCATATTTTAGCCACCAGC
1 CTTATCTTCCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* *
51372568 CTTA-CCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
*
51372612 CTTATCTTCCTAAGGTAGCAAG
1 CTTATCTTCCTGAGGTAGCAAG
51372634 GAAGCAAACT
Statistics
Matches: 394, Mismatches: 113, Indels: 88
0.66 0.19 0.15
Matches are distributed among these distances:
37 2 0.01
38 21 0.05
39 4 0.01
40 2 0.01
42 8 0.02
43 22 0.06
44 212 0.54
45 75 0.19
46 9 0.02
47 8 0.02
48 21 0.05
49 10 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
CTTATCTTCCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
Found at i:51372571 original size:181 final size:181
Alignment explanation
Indices: 51372124--51372637 Score: 757
Period size: 181 Copynumber: 2.9 Consensus size: 181
51372114 TAAAGATCTC
* * * * *
51372124 ATCTCCCTGAGATAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTTAAGGTAGCAGGG
1 ATCTCCCT-AAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGG
* * *
51372189 GAGCAGATTTTAACCACTAGCCTTATCTCTCTAAAGTAGCAAGAGAACAGGTTGAAGATTGTAGT
65 GAGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
** * *
51372254 CTTATCTTCCTGAGGT----ATTAAGGAAGCTGACTGAAGATTGAAGATCTT
130 CTTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGAAGACCTT
** * * *
51372302 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGTAGTAGGGA
1 ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGGG
* *
51372367 AGCAGATTTTATCCATTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
66 AGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
*
51372432 TTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGTAGACCTT
131 TTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGAAGACCTT
*
51372483 ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTGAGGTAGCAGGGG
1 ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGGG
* * * *
51372548 AGCATATTTTAGCCACCAGCCTTACCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
66 AGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
*
51372613 TTATCTTCCTAAGGTAGCAAGGAAG
131 TTATCTTCCTGAGGTAGCAAGGAAG
51372638 CAAACTAAAG
Statistics
Matches: 300, Mismatches: 32, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
177 122 0.41
178 8 0.03
181 170 0.57
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (181 bp):
ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGGG
AGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
TTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGAAGACCTT
Found at i:51372798 original size:45 final size:45
Alignment explanation
Indices: 51372739--51372854 Score: 160
Period size: 45 Copynumber: 2.6 Consensus size: 45
51372729 AGATAGCAGC
* * * *
51372739 CTTATCTCCCTGAAGTAGCAGTGGGGAAGATTAAGGACGGTGATT
1 CTTATCTCCTTGAAGTAGCAGTGGAGAAGACTAAGGACAGTGATT
* *
51372784 CTTATCTCCTTGAAGTAGTAGTGGAGAAGACTGAGGACAGTGATT
1 CTTATCTCCTTGAAGTAGCAGTGGAGAAGACTAAGGACAGTGATT
**
51372829 CTTATCTCCTTGAAGTTCCAGTGGAG
1 CTTATCTCCTTGAAGTAGCAGTGGAG
51372855 TAGATTGAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (45 bp):
CTTATCTCCTTGAAGTAGCAGTGGAGAAGACTAAGGACAGTGATT
Found at i:51374552 original size:15 final size:15
Alignment explanation
Indices: 51374532--51374590 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 15
51374522 CTTAAATACC
51374532 TATTATTTTTATATA
1 TATTATTTTTATATA
*
51374547 TATTATTTATATTAGACTA
1 TATTA-TT-T-TTATA-TA
51374566 CCTATTATTTTTATATA
1 --TATTATTTTTATATA
51374583 TATTATTT
1 TATTATTT
51374591 ATATTAGACT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
15 13 0.36
16 2 0.06
17 3 0.08
18 8 0.22
19 3 0.08
20 2 0.06
21 5 0.14
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTTTTATATA
Found at i:51374568 original size:36 final size:36
Alignment explanation
Indices: 51374528--51374628 Score: 150
Period size: 36 Copynumber: 2.8 Consensus size: 36
51374518 TATTCTTAAA
51374528 TACCTATTATTTTTATATATATTATTTATATTAGAC
1 TACCTATTATTTTTATATATATTATTTATATTAGAC
51374564 TACCTATTATTTTTATATATATTATTTATATTAGAC
1 TACCTATTATTTTTATATATATTATTTATATTAGAC
* * *
51374600 TATCT-TTTTTAATTTATGTATATTATTTA
1 TACCTATTATT--TTTATATATATTATTTA
51374629 CTTATATATA
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
35 4 0.07
36 40 0.67
37 16 0.27
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (36 bp):
TACCTATTATTTTTATATATATTATTTATATTAGAC
Found at i:51374571 original size:21 final size:19
Alignment explanation
Indices: 51374545--51374602 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
51374535 TATTTTTATA
51374545 TATATTATTTATATTAGAC
1 TATATTATTTATATTAGAC
*
51374564 TACCTATTA-TT-T-TTATA-
1 TA--TATTATTTATATTAGAC
51374581 TATATTATTTATATTAGAC
1 TATATTATTTATATTAGAC
51374600 TAT
1 TAT
51374603 CTTTTTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 5 0.16
16 2 0.06
17 3 0.10
18 8 0.26
19 6 0.19
20 2 0.06
21 5 0.16
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.55
Consensus pattern (19 bp):
TATATTATTTATATTAGAC
Found at i:51380196 original size:30 final size:30
Alignment explanation
Indices: 51380162--51380218 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
51380152 TAACTCAAAA
51380162 TTTTGAAAAATTACAATTTTGCCCCTAAAC
1 TTTTGAAAAATTACAATTTTGCCCCTAAAC
* * * *
51380192 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGAAAAATTACAATTTTGCCCCTA
51380219 GGCTCGGTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:51389056 original size:12 final size:12
Alignment explanation
Indices: 51389026--51389057 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
51389016 TATATATTTT
51389026 AAAATT-ATATA
1 AAAATTAATATA
51389037 AAAA-TAATATA
1 AAAATTAATATA
51389048 AAAATTAATA
1 AAAATTAATA
51389058 CGAGCGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:51394462 original size:15 final size:15
Alignment explanation
Indices: 51394442--51394489 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
51394432 TTTATGGAAA
51394442 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
51394457 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
51394471 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
51394487 ATC
1 ATC
51394490 GAGATATTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:51394470 original size:30 final size:31
Alignment explanation
Indices: 51394436--51394499 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
51394426 TCCATATTTA
51394436 TGGAAAATCAAAGATATGGGTATC-AAATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
* *
51394466 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
51394497 TGG
1 TGG
51394500 CATAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 23 0.74
31 8 0.26
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.27
Consensus pattern (31 bp):
TGGAAAATCAAAGATATGGGTATCGAAATAT
Found at i:51398575 original size:15 final size:15
Alignment explanation
Indices: 51398555--51398697 Score: 150
Period size: 15 Copynumber: 9.5 Consensus size: 15
51398545 NNNNNNNNNN
51398555 TCAAATATATGGGTA
1 TCAAATATATGGGTA
**
51398570 TCAAATAT-TGGAAA
1 TCAAATATATGGGTA
51398584 GTCAAATATATGGGTA
1 -TCAAATATATGGGTA
**
51398600 TCAAATAT-TGGAAA
1 TCAAATATATGGGTA
51398614 GTCAAATATATGGGTA
1 -TCAAATATATGGGTA
**
51398630 TCAAATAT-TGGAAA
1 TCAAATATATGGGTA
51398644 GTCAAATATATGGGTA
1 -TCAAATATATGGGTA
**
51398660 TCAAATAT-TGGAAA
1 TCAAATATATGGGTA
51398674 GTCAAATATATGGGTA
1 -TCAAATATATGGGTA
51398690 TCAAATAT
1 TCAAATAT
51398698 TGGAAAGTCA
Statistics
Matches: 104, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
14 16 0.15
15 72 0.69
16 16 0.15
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (15 bp):
TCAAATATATGGGTA
Found at i:51398591 original size:30 final size:30
Alignment explanation
Indices: 51398555--51398731 Score: 320
Period size: 30 Copynumber: 5.9 Consensus size: 30
51398545 NNNNNNNNNN
51398555 TCAAATATATGGGTATCAAATATTGGAAAG
1 TCAAATATATGGGTATCAAATATTGGAAAG
51398585 TCAAATATATGGGTATCAAATATTGGAAAG
1 TCAAATATATGGGTATCAAATATTGGAAAG
51398615 TCAAATATATGGGTATCAAATATTGGAAAG
1 TCAAATATATGGGTATCAAATATTGGAAAG
51398645 TCAAATATATGGGTATCAAATATTGGAAAG
1 TCAAATATATGGGTATCAAATATTGGAAAG
51398675 TCAAATATATGGGTATCAAATATTGGAAAG
1 TCAAATATATGGGTATCAAATATTGGAAAG
*
51398705 TC-AATGATATGGGTATCGAGATATTGG
1 TCAAAT-ATATGGGTATC-AAATATTGG
51398732 CATAATAAAA
Statistics
Matches: 144, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
29 3 0.02
30 133 0.92
31 8 0.06
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (30 bp):
TCAAATATATGGGTATCAAATATTGGAAAG
Found at i:51403164 original size:21 final size:20
Alignment explanation
Indices: 51403140--51403230 Score: 94
Period size: 21 Copynumber: 4.3 Consensus size: 20
51403130 TCTGCTGCCA
*
51403140 TCGCTGCTGCCTCTGCCTCTC
1 TCGCTGCTGCCT-TGCCTCCC
51403161 TCGCT-CATGCCTCTGCCTCCC
1 TCGCTGC-TGCCT-TGCCTCCC
* *
51403182 TCGCTGTTGCAGTTGCCTCCC
1 TCGCTGCTGC-CTTGCCTCCC
51403203 TCGCTGCTGCCGTTGCCTCCC
1 TCGCTGCTGCC-TTGCCTCCC
*
51403224 TCTCTGC
1 TCGCTGC
51403231 CACCTCCGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.02
21 58 0.97
22 1 0.02
ACGTcount: A:0.02, C:0.46, G:0.20, T:0.32
Consensus pattern (20 bp):
TCGCTGCTGCCTTGCCTCCC
Found at i:51405061 original size:10 final size:10
Alignment explanation
Indices: 51405046--51405080 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
51405036 TTTGTACATA
51405046 ATATGCCATG
1 ATATGCCATG
51405056 ATATGCACATG
1 ATATGC-CATG
51405067 ATATGCCATG
1 ATATGCCATG
51405077 ATAT
1 ATAT
51405081 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:51405065 original size:21 final size:21
Alignment explanation
Indices: 51405041--51405080 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
51405031 ACTGATTTGT
51405041 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
51405062 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
51405081 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:51405086 original size:21 final size:20
Alignment explanation
Indices: 51405040--51405092 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
51405030 TACTGATTTG
*
51405040 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
51405061 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
51405082 TACATATATGC
1 TACATATATGC
51405093 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:51405426 original size:31 final size:31
Alignment explanation
Indices: 51405390--51405465 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
51405380 CATTTACAGT
* *
51405390 AAAGGCTTTGGCCTAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
51405421 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
51405452 AAAGGCTTCGGCCC
1 AAAGGCTTCGGCCC
51405466 CGTATATACT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:51408099 original size:80 final size:80
Alignment explanation
Indices: 51407856--51408117 Score: 327
Period size: 80 Copynumber: 3.3 Consensus size: 80
51407846 TATTCGAATG
* * * * * *
51407856 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAG-TGACTATATCCGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGAT-CCGAAGACATTTGTGCGAGTTG-CTATATCCGGGCTAAGACCCGAAGG
51407919 CATTTGTGCGAGTTGCT
64 CATTTGTGCGAGTTGCT
* * **
51407936 ATATCCGGGCTAAGA-CGTGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACGTGAAGGC
1 ATATCCGGGCTAAGATC-CGAAGACATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGC
51408000 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
51408016 ATATCCGGGCTAAGATCCGAAGACATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGATCCGAAGACATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCA
** * *
51408081 TTTGTGCTTGTGGTT
66 TTTGTGCGAGTTGCT
51408096 ATATCC-GGCTAA-ATTCCGAAGA
1 ATATCCGGGCTAAGA-TCCGAAGA
51408118 AACTTCCCGA
Statistics
Matches: 161, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 15 0.09
80 142 0.88
81 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGATCCGAAGACATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:51408103 original size:40 final size:40
Alignment explanation
Indices: 51407856--51408087 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
51407846 TATTCGAATG
* * * *
51407856 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
* *
51407896 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
**
51407936 ATATCCGGGCTAAGACGTGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
**
51407976 ATATCCGGGCTAAGACGTGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* *
51408016 ATATCCGGGCTAAGATCCGAAGACATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
51408056 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
51408088 TTGTGGTTAT
Statistics
Matches: 175, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 173 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:51408148 original size:51 final size:52
Alignment explanation
Indices: 51408071--51408168 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 52
51408061 CGGGCTAAGA
* **
51408071 CCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAAATTCCGAAGAAACTT
1 CCCGAAGGCACTTGTGCGAGTGGTTATATCCGGCTAAATTCCGAAGAAACTT
51408123 CCCGAAGGC-CTTGTGCGAGTGGTTATATCCGGCTAAATTCCGAAGA
1 CCCGAAGGCACTTGTGCGAGTGGTTATATCCGGCTAAATTCCGAAGA
51408169 TGCTTGGGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
51 34 0.79
52 9 0.21
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (52 bp):
CCCGAAGGCACTTGTGCGAGTGGTTATATCCGGCTAAATTCCGAAGAAACTT
Found at i:51408969 original size:20 final size:20
Alignment explanation
Indices: 51408946--51408985 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51408936 AATTAATAAA
51408946 TTATTTAATCGAACCTTGAT
1 TTATTTAATCGAACCTTGAT
51408966 TTATTTAATCGAACCTTGAT
1 TTATTTAATCGAACCTTGAT
51408986 GAATCTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (20 bp):
TTATTTAATCGAACCTTGAT
Found at i:51409763 original size:13 final size:14
Alignment explanation
Indices: 51409738--51409766 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
51409728 TGATGAATTG
51409738 AATTAAACAATTAT
1 AATTAAACAATTAT
51409752 AATTAAAC-ATTAT
1 AATTAAACAATTAT
51409765 AA
1 AA
51409767 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:51418638 original size:56 final size:54
Alignment explanation
Indices: 51418578--51418869 Score: 258
Period size: 56 Copynumber: 5.6 Consensus size: 54
51418568 GGTTATGTAA
*
51418578 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATACGTCATTATGT
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATA-AT-ATTATGT
51418634 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATACATCATTATGT
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATA-AT-ATTATGT
* ** * * ***
51418690 ATTATGTAAGTTATGTAAATTATGTAAGTTATTTATCTTATG-TAA-ATTATGT
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATAATATTATGT
* * *
51418742 A--A-GATATGTTATATAT-TTATGT--ATTATGTAAG-T-T-AT-GTA--A---
1 ATTATG-TAAGTTATTTATCTTATGTAAATTATGTAAGATATGATAATATTATGT
51418782 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATATATTTATGT
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATA-ATA-TTATGT
* ** *
51418838 ATTATGTAAGTTATGTAAATTATGTAAGTTAT
1 ATTATGTAAGTTATTTATCTTATGTAAATTAT
51418870 TTATCTTATG
Statistics
Matches: 192, Mismatches: 24, Indels: 40
0.75 0.09 0.16
Matches are distributed among these distances:
40 1 0.01
42 11 0.06
43 8 0.04
45 13 0.07
46 2 0.01
47 7 0.04
48 2 0.01
49 7 0.04
50 12 0.06
52 8 0.04
53 1 0.01
54 1 0.01
55 2 0.01
56 117 0.61
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.48
Consensus pattern (54 bp):
ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATAATATTATGT
Found at i:51418639 original size:74 final size:74
Alignment explanation
Indices: 51418518--51418665 Score: 217
Period size: 74 Copynumber: 2.0 Consensus size: 74
51418508 ATAAAAGGGA
* *
51418518 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAGGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
*
51418583 GTAAGTTAT
66 GTAAATTAT
* * **
51418592 TTATCTTATGTAAATTATGTAAGATATGATACGTCA-TTATGTATTATGTAAGTTATTTATCTTA
1 TTATCTTATGTAAATTATGTAAGATATGATACAT-ATTTATGTATTATGTAAGTTATGTAAATTA
51418656 TGTAAATTAT
65 TGTAAATTAT
51418666 GTAAGATATG
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 65 0.98
75 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (74 bp):
TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
GTAAATTAT
Found at i:51418641 original size:29 final size:28
Alignment explanation
Indices: 51418605--51418704 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 28
51418595 TCTTATGTAA
51418605 ATTATGTAAGATATGATACGTCATTATGT
1 ATTATGTAAGATATGATAC-TCATTATGT
* *
51418634 ATTATGTAAGTTAT-TTA-TC-TTATGT
1 ATTATGTAAGATATGATACTCATTATGT
51418659 AAATTATGTAAGATATGATACATCATTATGT
1 --ATTATGTAAGATATGATAC-TCATTATGT
*
51418690 ATTATGTAAGTTATG
1 ATTATGTAAGATATG
51418705 TAAATTATGT
Statistics
Matches: 60, Mismatches: 5, Indels: 12
0.78 0.06 0.16
Matches are distributed among these distances:
25 6 0.10
26 2 0.03
27 13 0.22
28 4 0.07
29 27 0.45
30 2 0.03
31 6 0.10
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (28 bp):
ATTATGTAAGATATGATACTCATTATGT
Found at i:51418712 original size:74 final size:74
Alignment explanation
Indices: 51418634--51418914 Score: 528
Period size: 74 Copynumber: 3.8 Consensus size: 74
51418624 GTCATTATGT
*
51418634 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATACATCA-TTATGTATTATGTA
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATAT-ATTTATGTATTATGTA
51418698 AGTTATGTAA
65 AGTTATGTAA
*
51418708 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGTTATATATTTATGTATTATGTAA
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAA
51418773 GTTATGTAA
66 GTTATGTAA
51418782 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAA
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAA
51418847 GTTATGTAA
66 GTTATGTAA
51418856 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATT
1 ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATT
51418915 GTGATTGTGT
Statistics
Matches: 203, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
73 1 0.00
74 202 1.00
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (74 bp):
ATTATGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAA
GTTATGTAA
Found at i:51418762 original size:130 final size:130
Alignment explanation
Indices: 51418518--51418795 Score: 443
Period size: 130 Copynumber: 2.1 Consensus size: 130
51418508 ATAAAAGGGA
* *
51418518 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAGGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
*
51418583 GTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATACGTCATTATGTATTATGTAAGTTAT
66 GTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATACATCATTATGTATTATGTAAGTTAT
51418648 TTATCTTATGTAAATTATGTAAGATATGATACATCA-TTATGTATTATGTAAGTTATGTAAATTA
1 TTATCTTATGTAAATTATGTAAGATATGATACAT-ATTTATGTATTATGTAAGTTATGTAAATTA
* *
51418712 TGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGTTATAT-ATTTATGTATTATGTAAGTT
65 TGTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATACATCA-TTATGTATTATGTAAGTT
51418776 AT
129 AT
* ** *
51418778 GTAAATTATGTAAGTTAT
1 TTATCTTATGTAAATTAT
51418796 TTATCTTATG
Statistics
Matches: 137, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
129 1 0.01
130 135 0.99
131 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (130 bp):
TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
GTAAGTTATTTATCTTATGTAAATTATGTAAGATATGATACATCATTATGTATTATGTAAGTTAT
Found at i:51418770 original size:29 final size:31
Alignment explanation
Indices: 51418717--51418779 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
51418707 AATTATGTAA
*
51418717 GTTATTTATCTTATGTAAATTATGTAAGATAT
1 GTTATATATCTTATGT-AATTATGTAAGATAT
*
51418749 GTTATATAT-TTATGT-ATTATGTAAGTTAT
1 GTTATATATCTTATGTAATTATGTAAGATAT
51418778 GT
1 GT
51418780 AAATTATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 15 0.52
31 6 0.21
32 8 0.28
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.52
Consensus pattern (31 bp):
GTTATATATCTTATGTAATTATGTAAGATAT
Found at i:51419212 original size:105 final size:105
Alignment explanation
Indices: 51419035--51419253 Score: 332
Period size: 105 Copynumber: 2.1 Consensus size: 105
51419025 AATAATGATT
51419035 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAAAATTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAAAATTTTCCTGATTAAAATAAAA
* *
51419100 TAAAATAAAATATTTAAAAAAAAATTTTAAATACAATTTA
66 TAAAATAAAATATTCAAAAAAAAACTTTAAATACAATTTA
* * * *
51419140 ATTTAATTAGGTAATTTAAAATTAAAATAAAAGTAGAC-AAAATATTTATCGTGATTAAATTAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAAAATTT-TCCTGATTAAAATAAA
* * * *
51419204 ATAAAATAATATCTTCAAAATAAAACTTTAATTACAATTTA
65 ATAAAATAAAATATTCAAAAAAAAACTTTAAATACAATTTA
51419245 ATTTAATTA
1 ATTTAATTA
51419254 ATAAGGTTAA
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
104 8 0.08
105 95 0.92
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (105 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAAAATTTTCCTGATTAAAATAAAA
TAAAATAAAATATTCAAAAAAAAACTTTAAATACAATTTA
Found at i:51423843 original size:16 final size:16
Alignment explanation
Indices: 51423822--51423875 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
51423812 AGAATTAGAT
51423822 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
51423838 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
51423848 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
51423864 AAAATTTGAAAT
1 AAAATTTGAAAT
51423876 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:51424120 original size:7 final size:7
Alignment explanation
Indices: 51424108--51424237 Score: 68
Period size: 7 Copynumber: 18.1 Consensus size: 7
51424098 CCTAACATGT
51424108 ACCCTTA
1 ACCCTTA
*
51424115 ACCCTTGG
1 ACCCTT-A
51424123 ACCCTTA
1 ACCCTTA
*
51424130 ACTCCTAA
1 AC-CCTTA
*
51424138 ACCCTGA
1 ACCCTTA
*
51424145 ACCTTTA
1 ACCCTTA
*
51424152 ACCCCTA
1 ACCCTTA
* *
51424159 AGCTTTAA
1 ACCCTT-A
51424167 ACCC-TA
1 ACCCTTA
*
51424173 A-CATGT-
1 ACCCT-TA
51424179 ACCCTTA
1 ACCCTTA
*
51424186 ACCCTTGG
1 ACCCTT-A
51424194 ACCCTTA
1 ACCCTTA
*
51424201 ACTCCTAA
1 AC-CCTTA
51424209 ACCCTTA
1 ACCCTTA
*
51424216 ACCTTTA
1 ACCCTTA
**
51424223 ACTTTTA
1 ACCCTTA
51424230 ACCCTTA
1 ACCCTTA
51424237 A
1 A
51424238 ATCATAAACC
Statistics
Matches: 91, Mismatches: 23, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
5 1 0.01
6 4 0.04
7 59 0.65
8 27 0.30
ACGTcount: A:0.29, C:0.36, G:0.05, T:0.29
Consensus pattern (7 bp):
ACCCTTA
Found at i:51424149 original size:71 final size:71
Alignment explanation
Indices: 51424074--51424224 Score: 293
Period size: 71 Copynumber: 2.1 Consensus size: 71
51424064 TAGCCCTTAG
51424074 ACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACTCCTAAA
1 ACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACTCCTAAA
51424139 CCCTGA
66 CCCTGA
51424145 ACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACTCCTAAA
1 ACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACTCCTAAA
*
51424210 CCCTTA
66 CCCTGA
51424216 ACCTTTAAC
1 ACCTTTAAC
51424225 TTTTAACCCT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 79 1.00
ACGTcount: A:0.30, C:0.36, G:0.06, T:0.28
Consensus pattern (71 bp):
ACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACTCCTAAA
CCCTGA
Found at i:51424158 original size:22 final size:23
Alignment explanation
Indices: 51424109--51424159 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
51424099 CTAACATGTA
* *
51424109 CCCTTAACCCTTGGACCCTTAAC
1 CCCTAAACCCTTGAACCCTTAAC
* *
51424132 TCCTAAACCC-TGAACCTTTAAC
1 CCCTAAACCCTTGAACCCTTAAC
51424154 CCCTAA
1 CCCTAA
51424160 GCTTTAAACC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.27, C:0.41, G:0.06, T:0.25
Consensus pattern (23 bp):
CCCTAAACCCTTGAACCCTTAAC
Found at i:51424303 original size:15 final size:14
Alignment explanation
Indices: 51424283--51424316 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
51424273 AACCATAAAT
*
51424283 CATAATCCCTAAGTC
1 CATAATCCATAA-TC
51424298 CATAATCCATAATC
1 CATAATCCATAATC
51424312 CATAA
1 CATAA
51424317 ACCTTGAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (14 bp):
CATAATCCATAATC
Found at i:51424306 original size:7 final size:7
Alignment explanation
Indices: 51424283--51424316 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
51424273 AACCATAAAT
51424283 CATAATC
1 CATAATC
*
51424290 CCTAAGTC
1 CATAA-TC
51424298 CATAATC
1 CATAATC
51424305 CATAATC
1 CATAATC
51424312 CATAA
1 CATAA
51424317 ACCTTGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (7 bp):
CATAATC
Found at i:51424356 original size:15 final size:14
Alignment explanation
Indices: 51424336--51424375 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
51424326 TATTAACTCA
51424336 TAAACCATAAACCCC
1 TAAACCATAAA-CCC
*
51424351 TAAACCTTAAACCC
1 TAAACCATAAACCC
51424365 TAAACCCATAA
1 TAAA-CCATAA
51424376 TTCATAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:51424383 original size:22 final size:22
Alignment explanation
Indices: 51424333--51424390 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
51424323 AGATATTAAC
*
51424333 TCATAAACCATAAACCCCTAAA
1 TCATAAACCATAAACCCATAAA
* * * *
51424355 CCTTAAACCCTAAACCCATAAT
1 TCATAAACCATAAACCCATAAA
*
51424377 TCATAAACCTTAAA
1 TCATAAACCATAAA
51424391 ATATTAACTC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (22 bp):
TCATAAACCATAAACCCATAAA
Found at i:51424450 original size:14 final size:14
Alignment explanation
Indices: 51424334--51424451 Score: 56
Period size: 14 Copynumber: 8.0 Consensus size: 14
51424324 GATATTAACT
*
51424334 CATAAACCATAAACC
1 CATAAACCTTAAA-C
*
51424349 CCTAAACCTTAAAC
1 CATAAACCTTAAAC
* * **
51424363 CCTAAACCCATAATT
1 CATAAA-CCTTAAAC
*
51424378 CATAAACCTTAAAA
1 CATAAACCTTAAAC
* *
51424392 TATTAACTCATCATAAAC
1 CATAAAC-C-T--TAAAC
*
51424410 CATAAACCCTAAAC
1 CATAAACCTTAAAC
* ** *
51424424 TATATTCCCTAAAC
1 CATAAACCTTAAAC
51424438 CATAAACCTTAAAC
1 CATAAACCTTAAAC
51424452 TAAAATGATA
Statistics
Matches: 76, Mismatches: 22, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
14 43 0.57
15 22 0.29
16 1 0.01
17 1 0.01
18 9 0.12
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:51424919 original size:41 final size:41
Alignment explanation
Indices: 51424749--51424904 Score: 197
Period size: 41 Copynumber: 3.8 Consensus size: 41
51424739 TTTGAAAAAA
* * * * *
51424749 CGCCGCTATAAAT-AGAGCAATAGCGGTGTTTTTCAAAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
*
51424789 CGCCGCTATATATCTGAGCATTAGCGGCGTTTTTCATAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
* * *
51424830 CGCCGCTATAGATTTGAGCATTAGTGACGTTTTTCATAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
* * *
51424871 TGCCGCTATAGATCTAAGCATTAGCGGCGCTTTT
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTT
51424905 GGCAAAACGC
Statistics
Matches: 100, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 12 0.12
41 88 0.88
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (41 bp):
CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
Found at i:51425028 original size:39 final size:38
Alignment explanation
Indices: 51424969--51425073 Score: 138
Period size: 39 Copynumber: 2.6 Consensus size: 38
51424959 TTACTTTTGT
51424969 GGCGTTTTTTTGCAAACGCCGCTAATGCCCGATCTGTAGC
1 GGCGTTTTTTT--AAACGCCGCTAATGCCCGATCTGTAGC
* *
51425009 GGCGTTTTTTTAAAGCGCCGCTAATGCTCGATCTTTAGC
1 GGCGTTTTTTTAAA-CGCCGCTAATGCCCGATCTGTAGC
51425048 GGCGTTTTTACTTTAAACGCCGCTAA
1 GGCG-TTTT--TTTAAACGCCGCTAA
51425074 AAATGCCGCG
Statistics
Matches: 59, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
38 3 0.05
39 26 0.44
40 15 0.25
41 9 0.15
42 6 0.10
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (38 bp):
GGCGTTTTTTTAAACGCCGCTAATGCCCGATCTGTAGC
Found at i:51426451 original size:19 final size:19
Alignment explanation
Indices: 51426429--51426485 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
51426419 AAGAAATATT
51426429 AAAATAATTTTTAAAATTC
1 AAAATAATTTTTAAAATTC
* *
51426448 AAAAT-ATTTATAAAAATTT
1 AAAATAATTT-TTAAAATTC
51426467 AAAATTTATATTTTTAAAA
1 AAAA--TA-ATTTTTAAAA
51426486 AATTATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.13
19 16 0.53
21 1 0.03
22 5 0.17
23 4 0.13
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATAATTTTTAAAATTC
Found at i:51426475 original size:17 final size:17
Alignment explanation
Indices: 51426453--51426503 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
51426443 AATTCAAAAT
51426453 ATTTATAAAAATTTAAA
1 ATTTATAAAAATTTAAA
**
51426470 ATTTAT--ATTTTTAAAA
1 ATTTATAAAAATTT-AAA
*
51426486 AATTATAAAAATTTAAA
1 ATTTATAAAAATTTAAA
51426503 A
1 A
51426504 AAAATTCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
15 4 0.15
16 8 0.31
17 10 0.38
18 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATTTATAAAAATTTAAA
Found at i:51426484 original size:23 final size:26
Alignment explanation
Indices: 51426451--51426500 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
51426441 AAAATTCAAA
51426451 ATATTTAT-AAAAATT-T-AAAATTT
1 ATATTTATAAAAAATTATAAAAATTT
*
51426474 ATATTTTTAAAAAATTATAAAAATTT
1 ATATTTATAAAAAATTATAAAAATTT
51426500 A
1 A
51426501 AAAAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 7 0.30
24 7 0.30
25 1 0.04
26 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATTTATAAAAAATTATAAAAATTT
Found at i:51426611 original size:17 final size:17
Alignment explanation
Indices: 51426589--51426627 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
51426579 CATATTAAAG
*
51426589 TATTTTATTTTTAAAAT
1 TATTTTATTTTGAAAAT
*
51426606 TATTTTGTTTTGAAAAT
1 TATTTTATTTTGAAAAT
51426623 T-TTTT
1 TATTTT
51426628 CAAATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (17 bp):
TATTTTATTTTGAAAAT
Found at i:51432453 original size:46 final size:45
Alignment explanation
Indices: 51432400--51432575 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
51432390 TATTTGGGCA
51432400 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
51432446 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
** * *
51432493 TCCGGGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
51432539 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51432576 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.63
47 28 0.27
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:51432555 original size:93 final size:93
Alignment explanation
Indices: 51432396--51432567 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
51432386 AGGATATTTG
* * *
51432396 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
51432461 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
** * *
51432489 GGCATCCGGGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51432554 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51432568 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51435334 original size:18 final size:17
Alignment explanation
Indices: 51435293--51435327 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
51435283 CAAATATTAC
51435293 TATTTATGTATTTTTTA
1 TATTTATGTATTTTTTA
51435310 TATTTAT-TATTTTTTA
1 TATTTATGTATTTTTTA
51435326 TA
1 TA
51435328 GATTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TATTTATGTATTTTTTA
Found at i:51437120 original size:20 final size:19
Alignment explanation
Indices: 51437084--51437122 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
51437074 AATCGAGTTA
**
51437084 AATAAAGAAATTTAAAAAT
1 AATAAAGAAATAAAAAAAT
51437103 AATAATAGAAATAAAAAAAT
1 AATAA-AGAAATAAAAAAAT
51437123 TGAAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (19 bp):
AATAAAGAAATAAAAAAAT
Found at i:51437267 original size:52 final size:53
Alignment explanation
Indices: 51437209--51437332 Score: 137
Period size: 53 Copynumber: 2.4 Consensus size: 53
51437199 TAAGTGATTA
51437209 AAATAATATGGCGGCACCAAAAAATAA-TTTTTTA-TTTAATTTAT-ATACCTCC
1 AAATAATATGGCGGCACCAAAAAATAATTTTTTTAGTTT-ATTT-TGATACCTCC
* ** * * * *
51437261 AAATAATGTGTTGTCACCAAAAGATAATTTTTTTAGTTTATTTTGGTGCCTCC
1 AAATAATATGGCGGCACCAAAAAATAATTTTTTTAGTTTATTTTGATACCTCC
*
51437314 AAATAACATGGCGGCACCA
1 AAATAATATGGCGGCACCA
51437333 CAAATATTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
52 23 0.40
53 31 0.54
54 3 0.05
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (53 bp):
AAATAATATGGCGGCACCAAAAAATAATTTTTTTAGTTTATTTTGATACCTCC
Found at i:51444437 original size:14 final size:14
Alignment explanation
Indices: 51444405--51444457 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
51444395 TCACCAAACT
* *
51444405 GAAAATGACTTCCG
1 GAAAATGATTTCTG
* *
51444419 AAAAATAATTTCTG
1 GAAAATGATTTCTG
51444433 GAAAATGATTTCTG
1 GAAAATGATTTCTG
51444447 GAAAATGATTT
1 GAAAATGATTT
51444458 ACTTTTCTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (14 bp):
GAAAATGATTTCTG
Found at i:51452960 original size:28 final size:28
Alignment explanation
Indices: 51452920--51452975 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
51452910 TTACAAAGAG
51452920 AAAATTAGAATTGAAAGAAATAAGCCTT
1 AAAATTAGAATTGAAAGAAATAAGCCTT
51452948 AAAATTAGAATTGAAAGAAATAAGCCTT
1 AAAATTAGAATTGAAAGAAATAAGCCTT
51452976 TCATTACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (28 bp):
AAAATTAGAATTGAAAGAAATAAGCCTT
Found at i:51453527 original size:12 final size:12
Alignment explanation
Indices: 51453512--51453537 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51453502 AGTATTTGTG
51453512 GAAGGAGATCCA
1 GAAGGAGATCCA
51453524 GAAGGAGATCCA
1 GAAGGAGATCCA
51453536 GA
1 GA
51453538 GATGGCAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.35, T:0.08
Consensus pattern (12 bp):
GAAGGAGATCCA
Found at i:51458318 original size:29 final size:30
Alignment explanation
Indices: 51458261--51458318 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
51458251 CGGAAGTTTT
* *
51458261 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCAATTTAAACCAGCTTG
51458291 GGCACTAAGTGTGCAATTT-AACCAGCTT
1 GGCACTAAGTGTGCAATTTAAACCAGCTT
51458319 CGGCTATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (30 bp):
GGCACTAAGTGTGCAATTTAAACCAGCTTG
Found at i:51467811 original size:15 final size:15
Alignment explanation
Indices: 51467772--51467812 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
51467762 CAAGGAAACC
51467772 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
51467787 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
51467802 GAATAAAGAAA
1 GAATAAAGAAA
51467813 CCCAAGGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:51470892 original size:93 final size:93
Alignment explanation
Indices: 51470784--51470954 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
51470774 GCCCCTAAGT
* * * *
51470784 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
51470849 CAAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCGGATGCCTAGTTACATTTCAC
*
51470877 GAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
51470942 CGAGTTGGGATGC
66 CAAGTTCGGATGC
51470955 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATTTCAC
Found at i:51470970 original size:46 final size:46
Alignment explanation
Indices: 51470779--51470947 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
51470769 AACTCGCCCC
* * * * *
51470779 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
* * *
51470825 TAAGTGAACTCGGACTCAACTCAACAAGTTCGG--ATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-CC--GCATCCA
* *
51470871 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
51470918 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
51470948 GGGATGCTCA
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 59 0.59
47 31 0.31
48 4 0.04
49 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
Found at i:51481616 original size:33 final size:33
Alignment explanation
Indices: 51481574--51481799 Score: 117
Period size: 33 Copynumber: 6.5 Consensus size: 33
51481564 TCCCCCAAGG
51481574 GGTTGCTAAGTGCTGATTCCTCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCTCGAATCATTGGT
* * * *
51481607 GGTTGCTAAGTTCTGATTCCATCGTATTTTAAATGTAAAGGG
1 GGTTGCTAAGTGCTGATTCC-TCG-A--AT-CAT-T---GGT
* *
51481649 GGTTGCTAAGTGCTGATTCCCCCAA--A---G-
1 GGTTGCTAAGTGCTGATTCCTCGAATCATTGGT
* *
51481676 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCTCGAATCATTGGT
* *
51481709 GGTTGCTAAGTGCTGA-TCCTACCGTATCTTAAATATGAAAGG
1 GGTTGCTAAGTGCTGATTCCT--CGAATC----AT-TG---GT
*
51481751 GGTTGCTAAGTGCTGATTCC-CTGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCTC-GAATCATTGGT
51481784 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
51481800 ATCCACCGAT
Statistics
Matches: 149, Mismatches: 17, Indels: 54
0.68 0.08 0.25
Matches are distributed among these distances:
27 23 0.15
28 1 0.01
29 1 0.01
32 4 0.03
33 52 0.35
34 7 0.05
35 2 0.01
36 2 0.01
37 2 0.01
38 4 0.03
39 3 0.02
40 2 0.01
41 5 0.03
42 38 0.26
43 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCTCGAATCATTGGT
Found at i:51481716 original size:102 final size:102
Alignment explanation
Indices: 51481536--51481771 Score: 368
Period size: 102 Copynumber: 2.3 Consensus size: 102
51481526 GAGTACATTG
* * *
51481536 AATATAAAGGGGGTTGCTAAGTGTTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCTCGAATC
1 AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAAGGGTTGCTAAGTGCTGATTCCCCGAATC
* * *
51481601 ATTGGTGGTTGCTAAGTTCTGATTCC-ATCGTATTTTA
66 ATTGGTGGTTGCTAAGTGCTGA-TCCTACCGTATCTTA
* *
51481638 AATGTAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAAGGGTTGCTAAGTGCTGATTCCCCGACTC
1 AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAAGGGTTGCTAAGTGCTGATTCCCCGAATC
51481703 ATTGGTGGTTGCTAAGTGCTGATCCTACCGTATCTTA
66 ATTGGTGGTTGCTAAGTGCTGATCCTACCGTATCTTA
51481740 AATATGAAA-GGGGTTGCTAAGTGCTGATTCCC
1 AATAT-AAAGGGGGTTGCTAAGTGCTGATTCCC
51481772 TGAATCACTG
Statistics
Matches: 123, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
101 3 0.02
102 117 0.95
103 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (102 bp):
AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAAGGGTTGCTAAGTGCTGATTCCCCGAATC
ATTGGTGGTTGCTAAGTGCTGATCCTACCGTATCTTA
Found at i:51488270 original size:34 final size:35
Alignment explanation
Indices: 51488215--51488281 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
51488205 CAAACACCAG
*
51488215 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
51488250 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
51488282 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:51497868 original size:21 final size:21
Alignment explanation
Indices: 51497842--51497882 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51497832 ATCTGCTCAA
* *
51497842 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
51497863 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
51497883 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:51502891 original size:39 final size:40
Alignment explanation
Indices: 51502813--51502902 Score: 121
Period size: 39 Copynumber: 2.2 Consensus size: 40
51502803 ATATTTTATA
* * *
51502813 TTTAATACAATAAAATATTTATTATATTTATTTGTG-TTT
1 TTTAATATAATAAAACATTTATTATATTTATTGGTGTTTT
51502852 TTTAATATAATAAAACATTTATTATATTTA-TGGTAGTTTTT
1 TTTAATATAATAAAACATTTATTATATTTATTGGT-G-TTTT
51502893 TTTAATATAA
1 TTTAATATAA
51502903 ATACTTTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
38 3 0.07
39 29 0.64
41 13 0.29
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (40 bp):
TTTAATATAATAAAACATTTATTATATTTATTGGTGTTTT
Found at i:51505797 original size:13 final size:13
Alignment explanation
Indices: 51505779--51505806 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51505769 GTTATTCAAG
51505779 TTATTCGAATTAT
1 TTATTCGAATTAT
51505792 TTATTCGAATTAT
1 TTATTCGAATTAT
51505805 TT
1 TT
51505807 GAGTCAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTATTCGAATTAT
Found at i:51506004 original size:20 final size:19
Alignment explanation
Indices: 51505979--51506034 Score: 71
Period size: 18 Copynumber: 2.9 Consensus size: 19
51505969 AAAAATAATC
51505979 AAAATAATTTTCAAAATTTG
1 AAAATAATTTT-AAAATTTG
*
51505999 AAAATAATTTTAAAA-TTC
1 AAAATAATTTTAAAATTTG
51506017 AAAAT-ATTTATAAAATTT
1 AAAATAATTT-TAAAATTT
51506035 ATGCTTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
17 4 0.12
18 12 0.36
19 6 0.18
20 11 0.33
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATAATTTTAAAATTTG
Found at i:51506098 original size:16 final size:16
Alignment explanation
Indices: 51506077--51506108 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51506067 AAATATATAA
*
51506077 AAAAATTTGAAATTTT
1 AAAAATTTAAAATTTT
51506093 AAAAATTTAAAATTTT
1 AAAAATTTAAAATTTT
51506109 TATAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AAAAATTTAAAATTTT
Found at i:51512669 original size:17 final size:17
Alignment explanation
Indices: 51512649--51512682 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51512639 TAAGAGATTA
51512649 TAAATAAAAATAAACAT
1 TAAATAAAAATAAACAT
* *
51512666 TAAATCAAAATATACAT
1 TAAATAAAAATAAACAT
51512683 ACATCTTAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAATAAAAATAAACAT
Found at i:51521825 original size:41 final size:41
Alignment explanation
Indices: 51521778--51521858 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
51521768 CCTATATTCC
*
51521778 AAGCAAACCTCTACTTCTCAACTTGTTCCCTAAAGAGTCTG
1 AAGCAAACATCTACTTCTCAACTTGTTCCCTAAAGAGTCTG
51521819 AAGCAAACATCTACTTCTCAACTTGTTCCCTAAAGAGTCT
1 AAGCAAACATCTACTTCTCAACTTGTTCCCTAAAGAGTCT
51521859 AAAACCCGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (41 bp):
AAGCAAACATCTACTTCTCAACTTGTTCCCTAAAGAGTCTG
Found at i:51525506 original size:24 final size:24
Alignment explanation
Indices: 51525474--51525525 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
51525464 GCGACATTGG
*
51525474 CAGCCGCAGCCGCAGCCT-TTGCAA
1 CAGCAGCAGCCGCAG-CTATTGCAA
* *
51525498 CAGCAGCAGCTGCTGCTATTGCAA
1 CAGCAGCAGCCGCAGCTATTGCAA
51525522 CAGC
1 CAGC
51525526 TGCGGAAGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.23, C:0.37, G:0.25, T:0.15
Consensus pattern (24 bp):
CAGCAGCAGCCGCAGCTATTGCAA
Found at i:51540642 original size:20 final size:20
Alignment explanation
Indices: 51540619--51540656 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51540609 TATGTTAGAA
51540619 ATGTTA-TGTTTTAGTTATTT
1 ATGTTATTGTTTT-GTTATTT
51540639 ATGTTATTGTTTTGTTAT
1 ATGTTATTGTTTTGTTAT
51540657 GAAGTGGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.66
Consensus pattern (20 bp):
ATGTTATTGTTTTGTTATTT
Found at i:51544390 original size:13 final size:13
Alignment explanation
Indices: 51544372--51544398 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51544362 CACTGATCCT
51544372 TATTAATATATTA
1 TATTAATATATTA
51544385 TATTAATATATTA
1 TATTAATATATTA
51544398 T
1 T
51544399 GTCTTAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTAATATATTA
Found at i:51546923 original size:27 final size:26
Alignment explanation
Indices: 51546892--51546944 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
51546882 AGGTAGCACT
51546892 AGGGAAAGAAAAATGATGACAAATTC
1 AGGGAAAGAAAAATGATGACAAATTC
*
51546918 NAGGGAAAGAAAAATGTTGACAAATTC
1 -AGGGAAAGAAAAATGATGACAAATTC
51546945 CATGTCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.23, T:0.17
Consensus pattern (26 bp):
AGGGAAAGAAAAATGATGACAAATTC
Found at i:51548660 original size:30 final size:30
Alignment explanation
Indices: 51548624--51548683 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
51548614 CTTCTCATTC
* *
51548624 CTGCTGTTGAATCAGCTGTTCCCACCCACT
1 CTGCTGTTGAAGCAGCTGCTCCCACCCACT
51548654 CTGCTGTTGAAGCAGCTGCTCCCACCCACT
1 CTGCTGTTGAAGCAGCTGCTCCCACCCACT
51548684 TCTAATTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.38, G:0.18, T:0.27
Consensus pattern (30 bp):
CTGCTGTTGAAGCAGCTGCTCCCACCCACT
Found at i:51555785 original size:18 final size:18
Alignment explanation
Indices: 51555751--51555784 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
51555741 TTGTGTATAT
51555751 ATATATTTTTTCCTTTTC
1 ATATATTTTTTCCTTTTC
51555769 ATATA-TTTTTCCTTTT
1 ATATATTTTTTCCTTTT
51555785 TACCTGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.68
Consensus pattern (18 bp):
ATATATTTTTTCCTTTTC
Found at i:51564117 original size:21 final size:21
Alignment explanation
Indices: 51564091--51564131 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51564081 AGACAAGCAA
* *
51564091 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
51564112 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
51564132 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:51580758 original size:5 final size:5
Alignment explanation
Indices: 51580748--51580778 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
51580738 ATCAAAAGTN
51580748 CCGAC CCGAC CCGAC CCGAC CCGAC CCGAC C
1 CCGAC CCGAC CCGAC CCGAC CCGAC CCGAC C
51580779 GTATTTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.61, G:0.19, T:0.00
Consensus pattern (5 bp):
CCGAC
Found at i:51581564 original size:24 final size:24
Alignment explanation
Indices: 51581529--51581574 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
51581519 TACCAAGTTT
51581529 ATTTATAGTAAAATT-ATATATTGA
1 ATTTATAGT-AAATTCATATATTGA
*
51581553 ATTTATATTAAATTCATATATT
1 ATTTATAGTAAATTCATATATT
51581575 TATATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (24 bp):
ATTTATAGTAAATTCATATATTGA
Found at i:51581582 original size:23 final size:23
Alignment explanation
Indices: 51581539--51581585 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
51581529 ATTTATAGTA
*
51581539 AAATTATATATTGAATTTATATT
1 AAATTATATATTGAATATATATT
*
51581562 AAATTCATATATTTATATATATAT
1 AAATT-ATATATTGA-ATATATAT
51581586 ATTAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 8 0.40
25 7 0.35
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
AAATTATATATTGAATATATATT
Found at i:51586096 original size:14 final size:14
Alignment explanation
Indices: 51586077--51586114 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
51586067 CTATTATCTC
51586077 TAGAAGAACCAAGT
1 TAGAAGAACCAAGT
51586091 TAGAAGAACCAAGT
1 TAGAAGAACCAAGT
*
51586105 TAGAATAACC
1 TAGAAGAACC
51586115 GCACACCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.16, G:0.18, T:0.16
Consensus pattern (14 bp):
TAGAAGAACCAAGT
Found at i:51600440 original size:11 final size:11
Alignment explanation
Indices: 51600424--51600448 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51600414 AAAATATCAA
51600424 TTAAAAATATT
1 TTAAAAATATT
51600435 TTAAAAATATT
1 TTAAAAATATT
51600446 TTA
1 TTA
51600449 TGAAGTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TTAAAAATATT
Found at i:51603813 original size:61 final size:63
Alignment explanation
Indices: 51603738--51603859 Score: 176
Period size: 64 Copynumber: 1.9 Consensus size: 63
51603728 TTTTATATTT
* * *
51603738 TTTTTTCAAATTTAGATTT-TAAAAAAATAAAACTTATATTTATAAAGCCACCA-AAAATATA
1 TTTTTTCAAATTTAGATTTAAAAAAAAAGAAAACTAATATTTATAAAGCCACCAGAAAATATA
*
51603799 TTTTTTCAAATTTAGATTTAAAAAAAAAAAGAAAACTAATATTTATAAAGCGACCAGAAAA
1 TTTTTTCAAATTTAGATTT--AAAAAAAAAGAAAACTAATATTTATAAAGCCACCAGAAAA
51603860 GAAGTGTACC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
61 19 0.36
64 30 0.57
65 4 0.08
ACGTcount: A:0.52, C:0.09, G:0.06, T:0.34
Consensus pattern (63 bp):
TTTTTTCAAATTTAGATTTAAAAAAAAAGAAAACTAATATTTATAAAGCCACCAGAAAATATA
Found at i:51605453 original size:55 final size:55
Alignment explanation
Indices: 51605387--51605497 Score: 177
Period size: 55 Copynumber: 2.0 Consensus size: 55
51605377 AAATAATTTT
* * * *
51605387 AAATGAAAAAATTCCTAAAAAGAAACAGCTGTTTTTTTTTTTTTTTGAGGGATTC
1 AAATAAAAAAATGCCCAAAAAAAAACAGCTGTTTTTTTTTTTTTTTGAGGGATTC
*
51605442 AAATAAAAAAATGCCCAAAAAAAAACAGGTGTTTTTTTTTTTTTTTGAGGGATTC
1 AAATAAAAAAATGCCCAAAAAAAAACAGCTGTTTTTTTTTTTTTTTGAGGGATTC
51605497 A
1 A
51605498 CATGCAGATA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (55 bp):
AAATAAAAAAATGCCCAAAAAAAAACAGCTGTTTTTTTTTTTTTTTGAGGGATTC
Found at i:51606561 original size:73 final size:73
Alignment explanation
Indices: 51606442--51606590 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 73
51606432 GACACTAACA
*
51606442 TGAGTGACCAAAACGTGACATTTCAAATATAAGTAATTAAAATATAACCTGAAAGAAACAAAAGT
1 TGAGTGACCAAAACGTAACATTTCAAATATAAGTAATTAAAATATAACCTGAAAGAAACAAAAGT
51606507 GACTATTT
66 GACTATTT
51606515 TGAGTGACCAAAACGTAACATTTCAAATATAAGTAATTAAAATATAACCTGAAAGAAACAAAAGT
1 TGAGTGACCAAAACGTAACATTTCAAATATAAGTAATTAAAATATAACCTGAAAGAAACAAAAGT
51606580 GACTATTT
66 GACTATTT
51606588 TGA
1 TGA
51606591 TAATTTACCC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.26
Consensus pattern (73 bp):
TGAGTGACCAAAACGTAACATTTCAAATATAAGTAATTAAAATATAACCTGAAAGAAACAAAAGT
GACTATTT
Found at i:51607297 original size:20 final size:21
Alignment explanation
Indices: 51607262--51607300 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51607252 AAACAATCGC
*
51607262 TTTTATTTATTTTATATTATA
1 TTTTAGTTATTTTATATTATA
51607283 TTTTAGTTA-TTTATATTA
1 TTTTAGTTATTTTATATTA
51607301 ATGTATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (21 bp):
TTTTAGTTATTTTATATTATA
Found at i:51609480 original size:18 final size:19
Alignment explanation
Indices: 51609457--51609493 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
51609447 ATATTATTTA
51609457 ATATTTATAATTA-TAACT
1 ATATTTATAATTATTAACT
*
51609475 ATATTTATATTTATTAACT
1 ATATTTATAATTATTAACT
51609494 TCGTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (19 bp):
ATATTTATAATTATTAACT
Found at i:51612004 original size:52 final size:52
Alignment explanation
Indices: 51611926--51612029 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
51611916 AGGACGTTGG
* *
51611926 TTTAGAGGCAGGGAGGGCATGGAGAGTACGGTGGTCAGGTGGGTTATGACCC
1 TTTAGAGGCAGGGAGGGCATGGAGAGTACGGGGGTCAGGGGGGTTATGACCC
51611978 TTTAGAGGCAGGGAGGGCATGGAGAGTACGGGGGTCAGGGGGGTTATGACCC
1 TTTAGAGGCAGGGAGGGCATGGAGAGTACGGGGGTCAGGGGGGTTATGACCC
51612030 ACTGGGTTTC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.21, C:0.13, G:0.46, T:0.19
Consensus pattern (52 bp):
TTTAGAGGCAGGGAGGGCATGGAGAGTACGGGGGTCAGGGGGGTTATGACCC
Found at i:51615581 original size:19 final size:19
Alignment explanation
Indices: 51615532--51615585 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
51615522 TAATCTTTTT
51615532 AACCCTGAACATTGAATCTA
1 AACCCTGAAC-TTGAATCTA
*
51615552 AATCCTGAACTTGAAGTC-A
1 AACCCTGAACTTGAA-TCTA
*
51615571 AACCCTAAACTTGAA
1 AACCCTGAACTTGAA
51615586 CTGAGGTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 19 0.63
20 11 0.37
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (19 bp):
AACCCTGAACTTGAATCTA
Found at i:51617188 original size:22 final size:21
Alignment explanation
Indices: 51617147--51617219 Score: 53
Period size: 22 Copynumber: 3.5 Consensus size: 21
51617137 TATATAATAG
*
51617147 AAATATTATTATTTTAATAAT
1 AAATATTATTATTTAAATAAT
51617168 AAATATTAATTA-TTAACATAAT
1 AAATATT-ATTATTTAA-ATAAT
* * **
51617190 TAATAGTGCTATTT-AATAA-
1 AAATATTATTATTTAAATAAT
*
51617209 AATTATTATTA
1 AAATATTATTA
51617220 AAAATAAGAA
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
19 6 0.15
20 4 0.10
21 13 0.33
22 16 0.41
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (21 bp):
AAATATTATTATTTAAATAAT
Found at i:51628613 original size:29 final size:30
Alignment explanation
Indices: 51628551--51628613 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
51628541 AAAGTCATAT
* * * * *
51628551 TTTAAGTACCAAATTGAAAAGTGAATATAC
1 TTTAAGTACAAAATTAAAAAATAAATATAA
51628581 TTTAAGTACAAAATTAAAAAATAAATA-AA
1 TTTAAGTACAAAATTAAAAAATAAATATAA
51628610 TTTA
1 TTTA
51628614 GGTATATAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (30 bp):
TTTAAGTACAAAATTAAAAAATAAATATAA
Found at i:51633440 original size:2 final size:2
Alignment explanation
Indices: 51633433--51633458 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
51633423 TGATATTGAT
51633433 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
51633459 TTATTCTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:51638254 original size:42 final size:42
Alignment explanation
Indices: 51638205--51638293 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
51638195 TTGCCTAGCT
* *
51638205 GTGTGTCACACACAGCTGAGACACACGTCTGTGTCTCTGGCC
1 GTGTGTCACACACAGCTGAGACACACGCCTGTGTCTCTGCCC
* *
51638247 GTGTGTCACACACAGTTGAGACACATGCCTGTGTCTCTGCCC
1 GTGTGTCACACACAGCTGAGACACACGCCTGTGTCTCTGCCC
51638289 GTGTG
1 GTGTG
51638294 AACGAAATAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (42 bp):
GTGTGTCACACACAGCTGAGACACACGCCTGTGTCTCTGCCC
Found at i:51640323 original size:22 final size:22
Alignment explanation
Indices: 51640294--51640359 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
51640284 TGCATTAATG
51640294 AACAGAGAGCACTGAAGTGCTA
1 AACAGAGAGCACTGAAGTGCTA
* ** *
51640316 TACAGAGAGCA-TAGATTTACTA
1 AACAGAGAGCACT-GAAGTGCTA
*
51640338 AACAGAGAGCACTGACGTGCTA
1 AACAGAGAGCACTGAAGTGCTA
51640360 GTAATCAAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (22 bp):
AACAGAGAGCACTGAAGTGCTA
Found at i:51640380 original size:25 final size:25
Alignment explanation
Indices: 51640343--51640397 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
51640333 TACTAAACAG
** *
51640343 AGAGCACTGACGTGCTAGTAATCAA
1 AGAGCACCAACGTGCTAATAATCAA
*
51640368 AGAGCACCAACGTGCTAATAATCAG
1 AGAGCACCAACGTGCTAATAATCAA
51640393 AGAGC
1 AGAGC
51640398 GCGCTTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (25 bp):
AGAGCACCAACGTGCTAATAATCAA
Found at i:51643455 original size:35 final size:35
Alignment explanation
Indices: 51643416--51643505 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 35
51643406 TTATTCGTTG
*
51643416 GTTTATCCGACTAGCGCTGGGTGCA-ACTTTCGTCA
1 GTTTATCCGACTAGCGCTGGG-GCACACATTCGTCA
** * * *
51643451 GTTTATTTGACTAGTG-TTGGGCACACATTCGTCG
1 GTTTATCCGACTAGCGCTGGGGCACACATTCGTCA
51643485 GTTTATCCGACTAGCGCTGGG
1 GTTTATCCGACTAGCGCTGGG
51643506 CGCGAATATT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
33 3 0.07
34 24 0.56
35 16 0.37
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (35 bp):
GTTTATCCGACTAGCGCTGGGGCACACATTCGTCA
Found at i:51643470 original size:74 final size:73
Alignment explanation
Indices: 51643349--51643584 Score: 214
Period size: 74 Copynumber: 3.3 Consensus size: 73
51643339 TCGATTCGTT
* * * ** *
51643349 CGACTAGCGCTAGGTGCAAATATCGTTGGTTTATCCAACTACAGTTGGGCTCACTAATTATTCGT
1 CGACTAGCGCTGGGCGC-AATATTGTCAGTTTATCCAACTAGAGTTGGGCTCACTAATTATTCGT
*
51643414 TGGTTTATC
65 CGGTTTATC
* *** * *
51643423 CGACTAGCGCTGGGTGCAACT-TTCGTCAGTTTATTTGACTAGTGTTGGG--CAC--A-CATTCG
1 CGACTAGCGCTGGGCGCAA-TATT-GTCAGTTTATCCAACTAGAGTTGGGCTCACTAATTATTCG
51643482 TCGGTTTATC
64 TCGGTTTATC
** * * * *
51643492 CGACTAGCGCTGGGCGCGAATATTGTTGGTTTATCCAACTAGAGCTAGGCTAACTAATTATTCAT
1 CGACTAGCGCTGGGCGC-AATATTGTCAGTTTATCCAACTAGAGTTGGGCTCACTAATTATTCGT
51643557 CGGTTTATC
65 CGGTTTATC
*
51643566 CGACTAGTGCTGGGCGCAA
1 CGACTAGCGCTGGGCGCAA
51643585 ATTCTTTCGC
Statistics
Matches: 129, Mismatches: 24, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
69 48 0.37
70 5 0.04
71 2 0.02
72 3 0.02
73 6 0.05
74 65 0.50
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.33
Consensus pattern (73 bp):
CGACTAGCGCTGGGCGCAATATTGTCAGTTTATCCAACTAGAGTTGGGCTCACTAATTATTCGTC
GGTTTATC
Found at i:51643497 original size:34 final size:35
Alignment explanation
Indices: 51643408--51643588 Score: 118
Period size: 35 Copynumber: 5.1 Consensus size: 35
51643398 CTCACTAATT
*
51643408 ATTCGTTGGTTTATCCGACTAGCGCTGGGTGCAAC
1 ATTCGTCGGTTTATCCGACTAGCGCTGGGTGCAAC
* * ** * *
51643443 TTTCGTCAGTTTATTTGACTAGTG-TTGG-GCACAC
1 ATTCGTCGGTTTATCCGACTAGCGCTGGGTGCA-AC
* *
51643477 ATTCGTCGGTTTATCCGACTAGCGCTGGGCGCGAAT
1 ATTCGTCGGTTTATCCGACTAGCGCTGGGTGC-AAC
* * * * * *
51643513 ATT-GTTGGTTTATCCAACTAGAGCTAGGCTAACTAATT
1 ATTCGTCGGTTTATCCGACTAGCGCT-GGGT-GC-AA-C
* * *
51643551 ATTCATCGGTTTATCCGACTAGTGCTGGGCGCAA-
1 ATTCGTCGGTTTATCCGACTAGCGCTGGGTGCAAC
51643585 ATTC
1 ATTC
51643589 TTTCGCGGAT
Statistics
Matches: 110, Mismatches: 28, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
33 3 0.03
34 28 0.25
35 40 0.36
36 10 0.09
37 5 0.05
38 6 0.05
39 18 0.16
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (35 bp):
ATTCGTCGGTTTATCCGACTAGCGCTGGGTGCAAC
Found at i:51646555 original size:24 final size:24
Alignment explanation
Indices: 51646485--51646561 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
51646475 AAAAGAGTGC
* *
51646485 CCCGTTATTAGCTCTCAT-GAGCTT
1 CCCGTTAATAGCTCT-TTGGAGCTT
* * *
51646509 CCCATTATATGGTTC-TTGCGAGCTT
1 CCCGTTA-ATAGCTCTTTG-GAGCTT
*
51646534 CCCGTTAATAGCTCTTTGGAGCAT
1 CCCGTTAATAGCTCTTTGGAGCTT
51646558 CCCG
1 CCCG
51646562 ATTGGTTGTG
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
23 1 0.03
24 20 0.50
25 19 0.47
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.35
Consensus pattern (24 bp):
CCCGTTAATAGCTCTTTGGAGCTT
Found at i:51646652 original size:25 final size:26
Alignment explanation
Indices: 51646624--51646674 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
51646614 CCTGATATAT
51646624 GGCTCTTT-GGAGCTTCCCGATTAAA
1 GGCTCTTTAGGAGCTTCCCGATTAAA
*
51646649 GGCTCTTTCATGAGCTTCCCGATTAA
1 GGCTCTTT-AGGAGCTTCCCGATTAA
51646675 TTTTCTCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.35
27 15 0.65
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (26 bp):
GGCTCTTTAGGAGCTTCCCGATTAAA
Found at i:51646727 original size:24 final size:23
Alignment explanation
Indices: 51646622--51646767 Score: 69
Period size: 24 Copynumber: 5.8 Consensus size: 23
51646612 GTCCTGATAT
*
51646622 ATGGCTCTTTGGAGCTTCCCGATTA
1 ATGGCTCTAT-GAGCTTCCCG-TTA
*
51646647 AAGGCTCTTTCATGAGCTTCCCGATTA
1 ATGGCTC--T-ATGAGCTTCCCG-TTA
** ** * *
51646674 ATTTTCTCTCCGGAGCTTCTCGATA
1 A-TGGCTCT-ATGAGCTTCCCGTTA
*
51646699 TTGGCTCGTATGAGCTTCCCGTTA
1 ATGGCTC-TATGAGCTTCCCGTTA
*
51646723 ATGGCTCT-TCGAAGCTTCCTGTTA
1 ATGGCTCTAT-G-AGCTTCCCGTTA
*
51646747 CATGGCTCACATGAGCTTCCC
1 -ATGGCTC-TATGAGCTTCCC
51646768 ATTTATGTTT
Statistics
Matches: 91, Mismatches: 20, Indels: 20
0.69 0.15 0.15
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 32 0.35
25 23 0.25
26 12 0.13
27 17 0.19
28 4 0.04
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (23 bp):
ATGGCTCTATGAGCTTCCCGTTA
Found at i:51648364 original size:26 final size:25
Alignment explanation
Indices: 51648329--51648424 Score: 92
Period size: 25 Copynumber: 3.9 Consensus size: 25
51648319 TATGCCTATA
*
51648329 CGAG-CATGTAAATGGGAAGCTCTTT
1 CGAGCCATGT-AATGGGAAGCTCTTG
51648354 CGAGCCATGTAATGGGAAGCTCTTG
1 CGAGCCATGTAATGGGAAGCTCTTG
* *
51648379 CGAGCCAAT-T-ATCGGGAAGCTCATA
1 CGAGCC-ATGTAAT-GGGAAGCTCTTG
* *
51648404 CGAGCCAT-AAACGGGAAGCTC
1 CGAGCCATGTAATGGGAAGCTC
51648425 AAGAGAGCCA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
24 13 0.21
25 42 0.68
26 7 0.11
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (25 bp):
CGAGCCATGTAATGGGAAGCTCTTG
Found at i:51648367 original size:25 final size:24
Alignment explanation
Indices: 51648339--51648424 Score: 93
Period size: 25 Copynumber: 3.5 Consensus size: 24
51648329 CGAGCATGTA
*
51648339 AATGGGAAGCTCTTTCGAGCCATGT
1 AATGGGAAGCTCTTACGAGCCAT-T
*
51648364 AATGGGAAGCTCTTGCGAGCCAATT
1 AATGGGAAGCTCTTACGAGCC-ATT
* *
51648389 -ATCGGGAAGCTCATACGAGCCATA
1 AAT-GGGAAGCTCTTACGAGCCATT
*
51648413 AACGGGAAGCTC
1 AATGGGAAGCTC
51648425 AAGAGAGCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
24 13 0.25
25 38 0.72
26 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (24 bp):
AATGGGAAGCTCTTACGAGCCATT
Done.