Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 20 of 185
Found at i:5508689 original size:15 final size:16
Alignment explanation
Indices: 5508669--5508699 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
5508659 GTCACATCTC
5508669 AAAAATT-GGGTTAGT
1 AAAAATTGGGGTTAGT
5508684 AAAAATTGGGGTTAGT
1 AAAAATTGGGGTTAGT
5508700 GAACCAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (16 bp):
AAAAATTGGGGTTAGT
Found at i:5509372 original size:11 final size:10
Alignment explanation
Indices: 5509354--5509403 Score: 55
Period size: 11 Copynumber: 4.6 Consensus size: 10
5509344 AAAAATTGAA
5509354 ACACCACCAT
1 ACACCACCAT
5509364 ACAACCACCAT
1 AC-ACCACCAT
*
5509375 AGCACCACCAC
1 A-CACCACCAT
5509386 ACCACCACCAT
1 A-CACCACCAT
5509397 AGCACCA
1 A-CACCA
5509404 TCGTATCACC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
10 2 0.06
11 31 0.91
12 1 0.03
ACGTcount: A:0.40, C:0.50, G:0.04, T:0.06
Consensus pattern (10 bp):
ACACCACCAT
Found at i:5509416 original size:22 final size:22
Alignment explanation
Indices: 5509355--5509403 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
5509345 AAAATTGAAA
* *
5509355 CACCACCATACAACCACCATAG
1 CACCACCACACCACCACCATAG
5509377 CACCACCACACCACCACCATAG
1 CACCACCACACCACCACCATAG
5509399 CACCA
1 CACCA
5509404 TCGTATCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.51, G:0.04, T:0.06
Consensus pattern (22 bp):
CACCACCACACCACCACCATAG
Found at i:5513586 original size:48 final size:47
Alignment explanation
Indices: 5513511--5513601 Score: 137
Period size: 48 Copynumber: 1.9 Consensus size: 47
5513501 TTATCTACGA
* **
5513511 TTATGTGGTCGTTATTGGCAATCATGTGGTGGCTTGTCCACAATATC
1 TTATGTGGCCGTTATCAGCAATCATGTGGTGGCTTGTCCACAATATC
*
5513558 TTATGTGGCCGTTTATCAGCAATTATGTGGTGGCTTGTCCACAA
1 TTATGTGGCCG-TTATCAGCAATCATGTGGTGGCTTGTCCACAA
5513602 ATTGTGTGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 10 0.26
48 29 0.74
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (47 bp):
TTATGTGGCCGTTATCAGCAATCATGTGGTGGCTTGTCCACAATATC
Found at i:5515437 original size:49 final size:50
Alignment explanation
Indices: 5515384--5515613 Score: 246
Period size: 49 Copynumber: 4.8 Consensus size: 50
5515374 GGTGGAAGTA
* *
5515384 AGTGGCAATTTATCTACAAATCAGTGGTGGCTTGACCACAAAGTGTT-TC
1 AGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTATC
* * * *
5515433 AGTGGCAGTATATCTGC--AT-ATTAGTGG-TT-T-CACAAAGTGTTATC
1 AGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTATC
5515477 AGTGG-AAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTT-TC
1 AGTGGCAA-TTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTATC
* * ** * * *
5515526 AATGGCAGTACATTTGCATATCAGTGGTGGCTTGTCCACAAAGTGTTATT
1 AGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTATC
*
5515576 AGTGG-AAGTTTATCTGCAAATCAGTGGTGACTTGTCCA
1 AGTGGCAA-TTTATCTGCAAATCAGTGGTGGCTTGTCCA
5515614 TAAATTGAGT
Statistics
Matches: 146, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
43 12 0.08
44 15 0.10
45 2 0.01
46 8 0.05
47 8 0.05
48 2 0.01
49 57 0.39
50 42 0.29
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (50 bp):
AGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTATC
Found at i:5515603 original size:99 final size:93
Alignment explanation
Indices: 5515384--5515613 Score: 318
Period size: 93 Copynumber: 2.4 Consensus size: 93
5515374 GGTGGAAGTA
* * * *
5515384 AGTGGCAA-TTTATCTACAAATCAGTGGTGGCTTGACCACAAAGTGTTTCAGTGGCAGTATATCT
1 AGTGG-AAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTCAATGGCAGTACATCT
5515448 GCATATTAGTGGTTTCACAAAGTGTTATC
65 GCATATTAGTGGTTTCACAAAGTGTTATC
*
5515477 AGTGGAAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTCAATGGCAGTACATTTG
1 AGTGGAAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTCAATGGCAGTACATCTG
* *
5515542 CATATCAGTGGTGGCTTGTCCACAAAGTGTTATT
66 CATAT---TAGTGG-TT-T-CACAAAGTGTTATC
*
5515576 AGTGGAAGTTTATCTGCAAATCAGTGGTGACTTGTCCA
1 AGTGGAAGTTTATCTGCAAATCAGTGGTGGCTTGTCCA
5515614 TAAATTGAGT
Statistics
Matches: 122, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
92 2 0.02
93 62 0.51
96 5 0.04
97 2 0.02
98 1 0.01
99 50 0.41
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (93 bp):
AGTGGAAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTCAATGGCAGTACATCTG
CATATTAGTGGTTTCACAAAGTGTTATC
Found at i:5521139 original size:9 final size:9
Alignment explanation
Indices: 5521125--5521152 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
5521115 TGAGCTTTTG
5521125 AATTCGAAT
1 AATTCGAAT
5521134 AATTCGAAT
1 AATTCGAAT
5521143 AATTCGAAT
1 AATTCGAAT
5521152 A
1 A
5521153 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:5522316 original size:197 final size:199
Alignment explanation
Indices: 5522027--5522424 Score: 669
Period size: 197 Copynumber: 2.0 Consensus size: 199
5522017 GACAATGGTT
*
5522027 ACAAGGACCCAAAATTTTTTTTAAATTTAACTCGAACAAATATATTTGATTCGATTCGATTCGAT
1 ACAAGGACCCAAAATTTTTTTAAAATTTAACTCGAACAAATATA-TTGATTCGATTCGATTCGAT
5522092 TCGAATTCCATCTCACTCGACTCGATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAG
65 TCGAATTCCATCTCACTCGACTCGATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAG
* * *
5522157 ATTCAAAAACTCGATTAACTCAAAATTTTTCAATTCGATTTGATTCGATTCGATCGAATGCTCAC
130 ATTCAAAAACTCGATTAACTCAAAAATTTTCAATTCGATTCGATTCGATTCGATCGAATACTCAC
5522222 CCCTA
195 CCCTA
*
5522227 ACAATGACCCAAAATTACTTTTTAAAATTTAACTCGAAC-AA-ATA-T-ATTCGATTCGATTCGA
1 ACAAGGACCCAAAATT--TTTTTAAAATTTAACTCGAACAAATATATTGATTCGATTCGATTCGA
5522288 TTCGAATTCCATCTCACTCGACTCGATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGA
64 TTCGAATTCCATCTCACTCGACTCGATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGA
** *
5522353 GATTTGAAAACTCGATTAACTCAAAAATTTTCGATTCGATTCGATTCGATTCGATCGAATACTCA
129 GATTCAAAAACTCGATTAACTCAAAAATTTTCAATTCGATTCGATTCGATTCGATCGAATACTCA
5522418 CCCCTA
194 CCCCTA
5522424 A
1 A
5522425 TTGAATATAC
Statistics
Matches: 188, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
197 147 0.78
198 1 0.01
200 18 0.10
201 2 0.01
202 20 0.11
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (199 bp):
ACAAGGACCCAAAATTTTTTTAAAATTTAACTCGAACAAATATATTGATTCGATTCGATTCGATT
CGAATTCCATCTCACTCGACTCGATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAGA
TTCAAAAACTCGATTAACTCAAAAATTTTCAATTCGATTCGATTCGATTCGATCGAATACTCACC
CCTA
Found at i:5522392 original size:5 final size:5
Alignment explanation
Indices: 5522382--5522407 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
5522372 CTCAAAAATT
5522382 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
5522408 CGAATACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:5524207 original size:32 final size:32
Alignment explanation
Indices: 5524150--5524222 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
5524140 TTTTGATCAA
*
5524150 TTCAAGTACCAACTAGGTTCTTTTTGGACAAG
1 TTCAAGTACCAACTAGGTTCATTTTGGACAAG
* *
5524182 TTCAAGTACCAACTAGGTAT-ATTTTGTATAAG
1 TTCAAGTACCAACTAGGT-TCATTTTGGACAAG
*
5524214 TTTAAGTAC
1 TTCAAGTAC
5524223 TAATTAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
32 35 0.97
33 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (32 bp):
TTCAAGTACCAACTAGGTTCATTTTGGACAAG
Found at i:5525607 original size:24 final size:23
Alignment explanation
Indices: 5525553--5525599 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
5525543 AAGAAGAGAC
5525553 TGAGTTTTTCTGAGCTGGGTTGT
1 TGAGTTTTTCTGAGCTGGGTTGT
5525576 TGAGTTTTTCTGAGCTGGGTTGT
1 TGAGTTTTTCTGAGCTGGGTTGT
5525599 T
1 T
5525600 CTTGTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.09, C:0.09, G:0.34, T:0.49
Consensus pattern (23 bp):
TGAGTTTTTCTGAGCTGGGTTGT
Found at i:5533989 original size:13 final size:14
Alignment explanation
Indices: 5533972--5534015 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
5533962 TGTTTCAATT
5533972 TAATTTTAATAATA
1 TAATTTTAATAATA
*
5533986 -AATTTTAAAAATAA
1 TAATTTTAATAAT-A
5534000 TAATTTTAAATAATA
1 TAATTTT-AATAATA
5534015 T
1 T
5534016 TCTTCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 11 0.44
14 1 0.04
15 8 0.32
16 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATTTTAATAATA
Found at i:5534000 original size:16 final size:16
Alignment explanation
Indices: 5533978--5534014 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
5533968 AATTTAATTT
5533978 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
5533995 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
5534010 TAATA
1 TAATA
5534015 TTCTTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:5534024 original size:29 final size:27
Alignment explanation
Indices: 5533972--5534027 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
5533962 TGTTTCAATT
5533972 TAATTTTAATAATAAATTTTAAAAATAA
1 TAATTTTAATAAT-AATTTTAAAAATAA
5534000 TAATTTTAAATAAT-ATTCTTCAAAAATA
1 TAATTTT-AATAATAATT-TT-AAAAATA
5534028 TTAAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 3 0.12
28 9 0.36
29 13 0.52
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (27 bp):
TAATTTTAATAATAATTTTAAAAATAA
Found at i:5536010 original size:18 final size:17
Alignment explanation
Indices: 5535989--5536026 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
5535979 TTTCCCTTCA
5535989 TTTTA-TTTATTTATTTAT
1 TTTTATTTTA-TTATTT-T
5536007 TTTTATTTTATTATTTT
1 TTTTATTTTATTATTTT
5536024 TTT
1 TTT
5536027 AATGCTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 11 0.58
19 4 0.21
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTATTTTATTATTTT
Found at i:5538173 original size:31 final size:31
Alignment explanation
Indices: 5538138--5538199 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
5538128 TCTTGGGTTA
5538138 GGTTCCGTTTGTGACGAC-ATCTTTCCCTATG
1 GGTTCCGTTTGTGACGACAAT-TTTCCCTATG
*
5538169 GGTTCCGTTTGTGACGGCAATTTTCCCTATG
1 GGTTCCGTTTGTGACGACAATTTTCCCTATG
5538200 AGTTTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.39
Consensus pattern (31 bp):
GGTTCCGTTTGTGACGACAATTTTCCCTATG
Found at i:5538266 original size:21 final size:21
Alignment explanation
Indices: 5538242--5538283 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5538232 TTTATAGATG
* *
5538242 CCTTTGTTTTCTGTTGAAAAT
1 CCTTTATTCTCTGTTGAAAAT
*
5538263 CCTTTATTCTCTTTTGAAAAT
1 CCTTTATTCTCTGTTGAAAAT
5538284 AAACAATTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (21 bp):
CCTTTATTCTCTGTTGAAAAT
Found at i:5540384 original size:101 final size:102
Alignment explanation
Indices: 5540264--5540448 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
5540254 AAAGTGATGG
* *
5540264 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACTGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTA-TCGAATGATAATGGTCACATGTGTAGT
5540327 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
* *
5540365 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
5540430 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
5540449 TGAACCGAAC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
100 7 0.09
101 37 0.47
102 34 0.44
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
Found at i:5540386 original size:51 final size:51
Alignment explanation
Indices: 5540260--5540455 Score: 218
Period size: 51 Copynumber: 3.9 Consensus size: 51
5540250 AGTGAAAGTG
* * * *
5540260 ATGGTCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACTGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * *
5540309 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * * *
5540360 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* *
5540412 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
5540456 AACATCATTG
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.02
50 38 0.31
51 79 0.65
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:5540450 original size:26 final size:26
Alignment explanation
Indices: 5540370--5540450 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
5540360 TTCGATCACG
5540370 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
5540396 CGTGTA-T-CGAATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
5540421 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
5540447 TGTG
1 TGTG
5540451 AACCGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:5540503 original size:45 final size:45
Alignment explanation
Indices: 5540452--5540546 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
5540442 TACTATGTGA
* * *
5540452 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
*
5540497 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
5540542 ACCGA
1 ACCGA
5540547 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:5547723 original size:41 final size:41
Alignment explanation
Indices: 5547677--5547790 Score: 167
Period size: 41 Copynumber: 2.8 Consensus size: 41
5547667 ATACTTAATT
*
5547677 ATACCCTTGAATTGCACATATGTGCCCCTGTTTGTACTTCG
1 ATACCCTTGAATTGCACATACGTGCCCCTGTTTGTACTTCG
*
5547718 ATACCCTTGAATTGCACATACGTGCCCCTATTTGTACTTCG
1 ATACCCTTGAATTGCACATACGTGCCCCTGTTTGTACTTCG
* * * *
5547759 GTACCCCT-AATTGCATATACGTGCCCATGTTT
1 ATACCCTTGAATTGCACATACGTGCCCCTGTTT
5547791 ACAGTCCAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
40 21 0.32
41 45 0.68
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (41 bp):
ATACCCTTGAATTGCACATACGTGCCCCTGTTTGTACTTCG
Found at i:5551091 original size:24 final size:24
Alignment explanation
Indices: 5551064--5551110 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
5551054 AAATGGAGTA
5551064 AGTTTATAGAATTTAGTGAGTTCC
1 AGTTTATAGAATTTAGTGAGTTCC
5551088 AGTTTATAGAATTTAGTGAGTTC
1 AGTTTATAGAATTTAGTGAGTTC
5551111 TAGAGGAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (24 bp):
AGTTTATAGAATTTAGTGAGTTCC
Found at i:5560478 original size:10 final size:10
Alignment explanation
Indices: 5560460--5560517 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
5560450 CAAATCTATC
*
5560460 AAAAATAATT
1 AAAATTAATT
*
5560470 AAAATTAATC
1 AAAATTAATT
*
5560480 AAAATTAATG
1 AAAATTAATT
*
5560490 AAAATTTTATAT
1 AAAA-TTAAT-T
5560502 AAAATTAATT
1 AAAATTAATT
*
5560512 TAAATT
1 AAAATT
5560518 TAACATGTTC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
10 27 0.69
11 8 0.21
12 4 0.10
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (10 bp):
AAAATTAATT
Found at i:5560480 original size:20 final size:20
Alignment explanation
Indices: 5560457--5560495 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
5560447 ATGCAAATCT
*
5560457 ATCAAAAATAATTAAAATTA
1 ATCAAAAATAATGAAAATTA
*
5560477 ATCAAAATTAATGAAAATT
1 ATCAAAAATAATGAAAATT
5560496 TTATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (20 bp):
ATCAAAAATAATGAAAATTA
Found at i:5561226 original size:15 final size:14
Alignment explanation
Indices: 5561208--5561241 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
5561198 TGTTCTTCTC
5561208 TTTTTTGTTTTCTTT
1 TTTTTTG-TTTCTTT
*
5561223 TTTTTTGTTTGTTT
1 TTTTTTGTTTCTTT
5561237 TTTTT
1 TTTTT
5561242 CTCGAGCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (14 bp):
TTTTTTGTTTCTTT
Found at i:5564157 original size:16 final size:15
Alignment explanation
Indices: 5564132--5564165 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
5564122 AAAGTTGATA
*
5564132 ATAATTAATATATATT
1 ATAATAAATATA-ATT
5564148 ATAATAAATATAATT
1 ATAATAAATATAATT
5564163 ATA
1 ATA
5564166 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:5567816 original size:21 final size:21
Alignment explanation
Indices: 5567780--5567819 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
5567770 GTCCTTTTAG
5567780 TTGCTAGGAAAGGCCTTCCAA
1 TTGCTAGGAAAGGCCTTCCAA
**
5567801 TTGCTAGGAATTGCCTTCC
1 TTGCTAGGAAAGGCCTTCC
5567820 TAGGATGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (21 bp):
TTGCTAGGAAAGGCCTTCCAA
Found at i:5567904 original size:21 final size:20
Alignment explanation
Indices: 5567859--5567900 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
5567849 CAAAGTCTAG
5567859 AATAACAAGGTCAGCAGGAA
1 AATAACAAGGTCAGCAGGAA
5567879 AATAACAAGGTCAGCAGGAA
1 AATAACAAGGTCAGCAGGAA
5567899 AA
1 AA
5567901 ATAAATTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.14, G:0.24, T:0.10
Consensus pattern (20 bp):
AATAACAAGGTCAGCAGGAA
Found at i:5573556 original size:18 final size:18
Alignment explanation
Indices: 5573533--5573568 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
5573523 AGGGTTGTCG
5573533 TGGTTTTATTGAACACAT
1 TGGTTTTATTGAACACAT
5573551 TGGTTTTATTGAACACAT
1 TGGTTTTATTGAACACAT
5573569 GATTAGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (18 bp):
TGGTTTTATTGAACACAT
Found at i:5580079 original size:30 final size:30
Alignment explanation
Indices: 5580040--5580101 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
5580030 ACAGGTATAT
5580040 ACATGGAAAT-GAT-ATTACATGATATATTGAA
1 ACATGGAAATGGATGA-TACATG-TATA-TGAA
5580071 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATGGAAATGGATGATACATGTATATGAA
5580100 AC
1 AC
5580102 TTGCTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (30 bp):
ACATGGAAATGGATGATACATGTATATGAA
Found at i:5581655 original size:15 final size:16
Alignment explanation
Indices: 5581626--5581655 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5581616 CAAACATGCT
5581626 TTAACACATTATCAAA
1 TTAACACATTATCAAA
5581642 TTAACACA-TATCAA
1 TTAACACATTATCAA
5581656 TAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:5583738 original size:50 final size:50
Alignment explanation
Indices: 5583679--5583851 Score: 163
Period size: 50 Copynumber: 3.5 Consensus size: 50
5583669 GAGTTCCTAT
* * ** *
5583679 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCAC
* *
5583729 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCAC
* * * * * * ** *
5583779 GTAAGACCATATCTGGTATATGACATTGGCA--GTACAACA-AACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCG-AGATGAGAAC-TCCCAC
5583828 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACCATGTCTGGGACATGGC
5583852 TTTGGCATGT
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
48 4 0.04
49 29 0.28
50 69 0.68
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCAC
Found at i:5591283 original size:56 final size:50
Alignment explanation
Indices: 5591211--5591448 Score: 185
Period size: 50 Copynumber: 4.7 Consensus size: 50
5591201 ATTTGGGTAA
* * * *
5591211 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATCATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* *
5591267 AGAGGTCCCACGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
5591317 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * * * * * *
5591367 AAAACTCCCATGTAAGACCATATCTAGGATATGAG-ATTGGCA--GTATAGG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATG-GCATTGGCACCG-AGATG
* ** *
5591416 AAACATCCCATGTAAGACCATGTCTGGGACATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATG
5591449 AATTTGGCAT
Statistics
Matches: 154, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
48 1 0.01
49 32 0.21
50 79 0.51
51 1 0.01
53 3 0.02
55 1 0.01
56 37 0.24
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:5591456 original size:49 final size:48
Alignment explanation
Indices: 5591328--5591457 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 48
5591318 GAGGTCCCCC
* * *
5591328 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAAAACTCCCAT
1 GTAAGACCATGTCTGGGACAT-GAATTGGCA-CGATAGGAAAACTCCCAT
* * *
5591378 GTAAGACCATATCTAGGATATGAGATTGGCA-GTATAGG-AAACATCCCAT
1 GTAAGACCATGTCTGGGACATGA-ATTGGCACG-ATAGGAAAAC-TCCCAT
5591427 GTAAGACCATGTCTGGGACATGAATTTGGCA
1 GTAAGACCATGTCTGGGACATGAA-TTGGCA
5591458 TGTTATTATC
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
48 6 0.09
49 37 0.55
50 24 0.36
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.23
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGAATTGGCACGATAGGAAAACTCCCAT
Found at i:5606459 original size:12 final size:13
Alignment explanation
Indices: 5606442--5606470 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
5606432 CTCATACATG
5606442 AATAAATAAA-GC
1 AATAAATAAATGC
5606454 AATAAATAAATGC
1 AATAAATAAATGC
5606467 AATA
1 AATA
5606471 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:5610246 original size:25 final size:25
Alignment explanation
Indices: 5610164--5610249 Score: 79
Period size: 25 Copynumber: 3.4 Consensus size: 25
5610154 TATGAACTGT
* * *
5610164 AATCAGTAATCTCATACGAGCTGAG
1 AATCGGTAACCTCATGCGAGCTGAG
5610189 TAA-CGGTAACCTCATGCGAGCTGA-
1 -AATCGGTAACCTCATGCGAGCTGAG
* *
5610213 ATATTGGTAACCTC-TCTCGAGCTGAG
1 A-ATCGGTAACCTCAT-GCGAGCTGAG
5610239 AATCGGTAACC
1 AATCGGTAACC
5610250 CTAATGACAT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
23 1 0.02
24 2 0.04
25 44 0.88
26 3 0.06
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (25 bp):
AATCGGTAACCTCATGCGAGCTGAG
Found at i:5637493 original size:27 final size:27
Alignment explanation
Indices: 5637463--5637515 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
5637453 CACGGGGTGA
*
5637463 TCCAACGGGACAATAAAC-TCGAGATAG
1 TCCAACGGAACAATAAACAT-GAGATAG
*
5637490 TCCAATGGAACAATAAACATGAGATA
1 TCCAACGGAACAATAAACATGAGATA
5637516 ATATCAGGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.17
Consensus pattern (27 bp):
TCCAACGGAACAATAAACATGAGATAG
Found at i:5640559 original size:40 final size:40
Alignment explanation
Indices: 5640504--5640613 Score: 175
Period size: 40 Copynumber: 2.8 Consensus size: 40
5640494 NNNNNNGCCT
5640504 TCGGGTCTTAGCCCGGATATATCAATTCGCACAAACGCCG
1 TCGGGTCTTAGCCCGGATATATCAATTCGCACAAACGCCG
* * *
5640544 TCGGGTCTTAGCCCGGATATATCAGTTCGCACAAATGCCT
1 TCGGGTCTTAGCCCGGATATATCAATTCGCACAAACGCCG
* *
5640584 TCGGGTCTTATCTCGGATATATCAATTCGC
1 TCGGGTCTTAGCCCGGATATATCAATTCGC
5640614 CCGGATATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
TCGGGTCTTAGCCCGGATATATCAATTCGCACAAACGCCG
Found at i:5640620 original size:18 final size:18
Alignment explanation
Indices: 5640597--5640631 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
5640587 GGTCTTATCT
5640597 CGGATATATCAATTCGCC
1 CGGATATATCAATTCGCC
5640615 CGGATATATCAATTCGC
1 CGGATATATCAATTCGC
5640632 ACAAATGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (18 bp):
CGGATATATCAATTCGCC
Found at i:5640644 original size:58 final size:58
Alignment explanation
Indices: 5640554--5640671 Score: 209
Period size: 58 Copynumber: 2.0 Consensus size: 58
5640544 TCGGGTCTTA
* * *
5640554 GCCCGGATATATCAGTTCGCACAAATGCCTTCGGGTCTTATCTCGGATATATCAATTC
1 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
5640612 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
1 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
5640670 GC
1 GC
5640672 ACAAATGCCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (58 bp):
GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
Found at i:5640667 original size:40 final size:40
Alignment explanation
Indices: 5640612--5640706 Score: 181
Period size: 40 Copynumber: 2.4 Consensus size: 40
5640602 ATATCAATTC
5640612 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTA
1 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTA
5640652 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTA
1 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTA
*
5640692 TCCCGGATATATCAA
1 GCCCGGATATATCAA
5640707 NNNNNNNNNN
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (40 bp):
GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTA
Found at i:5640683 original size:98 final size:98
Alignment explanation
Indices: 5640514--5640706 Score: 350
Period size: 98 Copynumber: 2.0 Consensus size: 98
5640504 TCGGGTCTTA
*
5640514 GCCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 GCCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
5640579 TGCCTTCGGGTCTTATCTCGGATATATCAATTC
66 TGCCTTCGGGTCTTATCCCGGATATATCAATTC
* *
5640612 GCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 GCCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
5640677 TGCCTTCGGGTCTTATCCCGGATATATCAA
66 TGCCTTCGGGTCTTATCCCGGATATATCAA
5640707 NNNNNNNNNN
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (98 bp):
GCCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
TGCCTTCGGGTCTTATCCCGGATATATCAATTC
Found at i:5651797 original size:101 final size:101
Alignment explanation
Indices: 5651677--5651861 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 101
5651667 AAAGTGATGG
* *
5651677 TCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTACCGGAAT-G-ATGGGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTAATACGTGTACCGG-ATGGAAT-GGTCACATGTGTAGT
*
5651740 ACTATGTGCGGGCTACTATGCGTACCGAATAGCTTCGA
64 ACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
* *
5651778 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGAAATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTAATACGTGTACCGGATGG-AATGGTCACATGTGTAGTA
5651843 CTATGTGCAGGCTACTATG
65 CTATGTGCAGGCTACTATG
5651862 TGAACTGAGT
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
100 2 0.03
101 39 0.51
102 33 0.43
103 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTAATACGTGTACCGGATGGAATGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
Found at i:5651798 original size:51 final size:48
Alignment explanation
Indices: 5651671--5651859 Score: 216
Period size: 51 Copynumber: 3.8 Consensus size: 48
5651661 AAAGTGAAAG
* *
5651671 TGATGGTCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTACCGGAA
1 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAA
* * * *
5651720 TGATGGGTCGCATGTGTAGTACTATGTGCGGGCTACTATGCGTACCGAA
1 TGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
* * * *
5651769 TAGCTTCGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGA
1 T-G-AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
5651820 TGGAAATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 T-G--ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
5651860 TGTGAACTGA
Statistics
Matches: 117, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
49 8 0.07
50 36 0.31
51 72 0.62
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (48 bp):
TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
Found at i:5651863 original size:26 final size:26
Alignment explanation
Indices: 5651782--5651863 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
5651772 CTTCGATCAC
5651782 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* * *
5651808 ACGTGTA-T-CGGATG-GAAATGG-TCAC-
1 ATGTGTAGTAC-TATGTG-CA-GGCT-ACT
5651833 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
5651859 ATGTG
1 ATGTG
5651864 AACTGAGTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.39
26 21 0.51
27 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:5653844 original size:92 final size:92
Alignment explanation
Indices: 5653687--5653870 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
5653677 AATACTAAAA
5653687 ATTTAAGGGGTTAAAGTGTAAATATGAAAAAGTTGAAGGGCCAATAGTGAAAATATTTTAAGGGT
1 ATTTAAGGGGTTAAAGTGTAAATATGAAAAAGTTGAAGGGCCAATAGTGAAAATATTTTAAGGGT
5653752 AGAATAATCTAGAAACCAAGAAAAATG
66 AGAATAATCTAGAAACCAAGAAAAATG
5653779 ATTTAAGGGGTTAAAGTGTAAATATGAAAAAGTTGAAGGGCCAATAGTGAAAATATTTTAAGGGT
1 ATTTAAGGGGTTAAAGTGTAAATATGAAAAAGTTGAAGGGCCAATAGTGAAAATATTTTAAGGGT
5653844 AGAATAATCTAGAAACCAAGAAAAATG
66 AGAATAATCTAGAAACCAAGAAAAATG
5653871 GATGAATTAG
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.47, C:0.05, G:0.23, T:0.25
Consensus pattern (92 bp):
ATTTAAGGGGTTAAAGTGTAAATATGAAAAAGTTGAAGGGCCAATAGTGAAAATATTTTAAGGGT
AGAATAATCTAGAAACCAAGAAAAATG
Found at i:5663301 original size:17 final size:17
Alignment explanation
Indices: 5663279--5663313 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
5663269 CTCATGGTCC
5663279 CGTAAAGATGTATAAAA
1 CGTAAAGATGTATAAAA
5663296 CGTAAAGATGTATAAAA
1 CGTAAAGATGTATAAAA
5663313 C
1 C
5663314 TATTGAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.09, G:0.17, T:0.23
Consensus pattern (17 bp):
CGTAAAGATGTATAAAA
Found at i:5667156 original size:19 final size:19
Alignment explanation
Indices: 5667119--5667158 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
5667109 AATTGGTGAA
** *
5667119 ATTTGGTTTTGTTATTTTT
1 ATTTGGTTTCATTAGTTTT
5667138 ATTTGGTTTCATTAGTTTT
1 ATTTGGTTTCATTAGTTTT
5667157 AT
1 AT
5667159 CTAACTTAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.15, T:0.68
Consensus pattern (19 bp):
ATTTGGTTTCATTAGTTTT
Found at i:5680457 original size:40 final size:39
Alignment explanation
Indices: 5680413--5680517 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
5680403 AGTGACCATA
*
5680413 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
5680453 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
5680491 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
5680518 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:5680474 original size:39 final size:40
Alignment explanation
Indices: 5680373--5680536 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
5680363 TTGAATGATG
* *
5680373 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
5680413 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
5680452 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
5680492 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
5680532 TCCGG
1 TCCGG
5680537 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:5680536 original size:79 final size:80
Alignment explanation
Indices: 5680373--5680523 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
5680363 TTGAATGATG
*
5680373 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
5680438 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
5680453 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
5680515 TTGAACGAG
64 TTGAACGAG
5680524 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:5688669 original size:40 final size:40
Alignment explanation
Indices: 5688430--5688655 Score: 303
Period size: 40 Copynumber: 5.7 Consensus size: 40
5688420 TTGAATGATG
* * * * * *
5688430 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGGCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
5688470 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
5688510 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
5688550 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
5688590 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
5688631 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGGCCCGAAGGCATTTG
5688656 AACGAGTAGC
Statistics
Matches: 172, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
40 163 0.95
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:5701136 original size:13 final size:13
Alignment explanation
Indices: 5701118--5701142 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5701108 TGGTCATCAT
5701118 GGTGTGAACACAA
1 GGTGTGAACACAA
5701131 GGTGTGAACACA
1 GGTGTGAACACA
5701143 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:5702534 original size:20 final size:20
Alignment explanation
Indices: 5702463--5702534 Score: 54
Period size: 20 Copynumber: 3.3 Consensus size: 20
5702453 CATAAGTGAA
5702463 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
* * * *
5702483 CTCAGACATTAACATCCATAAGTGAA
1 CTCGGAC-TCAAC-T-C--AA-CGAG
5702509 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
5702529 CTCGGA
1 CTCGGA
5702535 TGCCCAAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
20 14 0.37
21 6 0.16
22 1 0.03
23 2 0.05
24 1 0.03
25 6 0.16
26 8 0.21
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (20 bp):
CTCGGACTCAACTCAACGAG
Found at i:5717163 original size:24 final size:23
Alignment explanation
Indices: 5717136--5717180 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
5717126 ATGTTGCTCT
*
5717136 GCTTC-AACTCAAGAAACTCTTTAC
1 GCTTCTAA-TCAACAAA-TCTTTAC
5717160 GCTTCTAATCAACAAATCTTT
1 GCTTCTAATCAACAAATCTTT
5717181 CACTGATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (23 bp):
GCTTCTAATCAACAAATCTTTAC
Found at i:5719222 original size:46 final size:45
Alignment explanation
Indices: 5719155--5719328 Score: 147
Period size: 46 Copynumber: 3.8 Consensus size: 45
5719145 ATGTAACCCT
*
5719155 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACAAGCTCAGGCATTC-CA
* *
5719201 TCCATAAGTGAACTCGGACTCAACTCAACAAGCTC-GG-ATGCCTA
1 TCCATAAGCGAACTCGGACTCAACTCAACAAGCTCAGGCATTCC-A
* * * * * *
5719245 GTTACATTTCA-CGAACTCGAACTCAACTCAATAAGCTCAGACATTAACA
1 --TCCA--TAAGCGAACTCGGACTCAACTCAACAAGCTCAGGCATT-CCA
* * * *
5719294 TCCATAAGTGAAATCAGACTCAACTCAACGAGCTC
1 TCCATAAGCGAACTCGGACTCAACTCAACAAGCTC
5719329 GGATGCCCAA
Statistics
Matches: 100, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 4 0.04
46 57 0.57
47 27 0.27
48 3 0.03
49 3 0.03
50 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (45 bp):
TCCATAAGCGAACTCGGACTCAACTCAACAAGCTCAGGCATTCCA
Found at i:5719269 original size:93 final size:93
Alignment explanation
Indices: 5719163--5719335 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
5719153 CTTCCATAAG
* * * ** * *
5719163 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACAAGCTCAGACATTAACATCCATAAGTGAAATCAGACTCAACTCA
5719228 ACAAGCTCGGATGCCTAGTTACATTTCA
66 ACAAGCTCGGATGCCTAGTTACATTTCA
*
5719256 CGAACTCGAACTCAACTCAATAAGCTCAGACATTAACATCCATAAGTGAAATCAGACTCAACTCA
1 CGAACTCGAACTCAACTCAACAAGCTCAGACATTAACATCCATAAGTGAAATCAGACTCAACTCA
*
5719321 ACGAGCTCGGATGCC
66 ACAAGCTCGGATGCC
5719336 CAAATATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACAAGCTCAGACATTAACATCCATAAGTGAAATCAGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATTTCA
Found at i:5727147 original size:19 final size:19
Alignment explanation
Indices: 5727123--5727162 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
5727113 GTTTCTTGTG
5727123 CATAGAGAACAACAAGGGA
1 CATAGAGAACAACAAGGGA
5727142 CATAGAGAACAACAAGGGA
1 CATAGAGAACAACAAGGGA
5727161 CA
1 CA
5727163 GGTTCTAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.53, C:0.17, G:0.25, T:0.05
Consensus pattern (19 bp):
CATAGAGAACAACAAGGGA
Found at i:5734790 original size:101 final size:101
Alignment explanation
Indices: 5734607--5734808 Score: 388
Period size: 101 Copynumber: 2.0 Consensus size: 101
5734597 CACAAGGTAA
5734607 TTTCGAAAGGGGTTAGCAAAAGAATTCCTCTCTTTTTCGTGATTACTCACTTCACTCGTTTCTTT
1 TTTCGAAAGGGGTTAGCAAAAGAATTCCTCTCTTTTTCGTGATTACTCACTTCACTCGTTTCTTT
5734672 TACAGACTCTCTTTCTTTTTCACTTGA-TTCTTTTC
66 TACAGACTCTCTTTCTTTTTCACTTGATTTCTTTTC
5734707 TTTCGAAAGGGGGTTAGCAAAAGAATTCCTCTCTTTTTCGTGATTACTCACTTCACTCGTTTCTT
1 TTTCGAAA-GGGGTTAGCAAAAGAATTCCTCTCTTTTTCGTGATTACTCACTTCACTCGTTTCTT
5734772 TTACAGACTCTCTTTCTTTTTCACTTGATTTCTTTTC
65 TTACAGACTCTCTTTCTTTTTCACTTGATTTCTTTTC
5734809 AAGCTCTCTT
Statistics
Matches: 100, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
100 8 0.08
101 84 0.84
102 8 0.08
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.46
Consensus pattern (101 bp):
TTTCGAAAGGGGTTAGCAAAAGAATTCCTCTCTTTTTCGTGATTACTCACTTCACTCGTTTCTTT
TACAGACTCTCTTTCTTTTTCACTTGATTTCTTTTC
Found at i:5734796 original size:33 final size:33
Alignment explanation
Indices: 5734758--5734820 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
5734748 GATTACTCAC
5734758 TTCACTCG-TTTCTTTT-ACAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
5734791 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
5734821 AATTTCTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.27, G:0.06, T:0.54
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:5734847 original size:27 final size:26
Alignment explanation
Indices: 5734817--5734902 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
5734807 TCAAGCTCTC
*
5734817 TTTCAATTTCTTTATTTGCTTTTTCTT
1 TTTCAATTTCTTTATTT-CATTTTCTT
* *
5734844 TTTCAATTTTTTTCATTCTCAATTTCTT
1 TTTCAATTTCTTT-ATT-TCATTTTCTT
5734872 TTTCAATTTTCTTT-TCTTCATTTTCTT
1 TTTCAA-TTTCTTTAT-TTCATTTTCTT
5734899 TTTC
1 TTTC
5734903 TCTCACTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 26 0.52
28 17 0.34
29 7 0.14
ACGTcount: A:0.13, C:0.17, G:0.01, T:0.69
Consensus pattern (26 bp):
TTTCAATTTCTTTATTTCATTTTCTT
Found at i:5734877 original size:12 final size:12
Alignment explanation
Indices: 5734838--5734935 Score: 61
Period size: 12 Copynumber: 7.6 Consensus size: 12
5734828 TTATTTGCTT
5734838 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
5734850 TTTTTTTCATTCTCAA
1 -TTTCTT--TT-TCAA
5734866 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
5734878 TTTTCTTTTCTTCAT
1 -TTTC-TTT-TTCAA
**
5734893 TTTCTTTTTCTC
1 TTTCTTTTTCAA
** *
5734905 TCACTTTTTCGA
1 TTTCTTTTTCAA
5734917 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
5734929 TCTCTTT
1 TTTCTTT
5734936 CTCCTTTTCT
Statistics
Matches: 66, Mismatches: 13, Indels: 13
0.72 0.14 0.14
Matches are distributed among these distances:
12 30 0.45
13 14 0.21
14 7 0.11
15 11 0.17
16 4 0.06
ACGTcount: A:0.12, C:0.20, G:0.01, T:0.66
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:5734878 original size:28 final size:27
Alignment explanation
Indices: 5734838--5734902 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 27
5734828 TTATTTGCTT
*
5734838 TTTCTTTTTCAATTTTTTTCATTC-TCAA
1 TTTCTTTTTCAATTTTCTT--TTCTTCAA
*
5734866 TTTCTTTTTCAATTTTCTTTTCTTCAT
1 TTTCTTTTTCAATTTTCTTTTCTTCAA
5734893 TTTCTTTTTC
1 TTTCTTTTTC
5734903 TCTCACTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 3 0.09
27 13 0.38
28 18 0.53
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTCTTTTTCAATTTTCTTTTCTTCAA
Found at i:5734944 original size:24 final size:24
Alignment explanation
Indices: 5734859--5734945 Score: 68
Period size: 24 Copynumber: 3.5 Consensus size: 24
5734849 ATTTTTTTCA
* *
5734859 TTCTCAATTTCTTTTTCAATTTTCTT
1 TTCTCATTTTCTTTTTCAA-TCTC-T
** *
5734885 TTCTTCATTTTCTTTTTCTCTCACT
1 TTC-TCATTTTCTTTTTCAATCTCT
*
5734910 TTTTCGA-TTTCTTTTTCAATCTCT
1 TTCTC-ATTTTCTTTTTCAATCTCT
*
5734934 TTCTCCTTTTCT
1 TTCTCATTTTCT
5734946 CGCTCAATGG
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
24 25 0.53
25 4 0.09
26 5 0.11
27 13 0.28
ACGTcount: A:0.10, C:0.24, G:0.01, T:0.64
Consensus pattern (24 bp):
TTCTCATTTTCTTTTTCAATCTCT
Found at i:5738588 original size:20 final size:19
Alignment explanation
Indices: 5738565--5738629 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
5738555 AAGCTCAAAC
5738565 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
5738585 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
5738605 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
5738625 GAGCT
1 GAGCT
5738630 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:5741362 original size:19 final size:19
Alignment explanation
Indices: 5741340--5741377 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
5741330 GGGTTTCAAG
5741340 TAAGTGTAGGAATAGTGAT
1 TAAGTGTAGGAATAGTGAT
5741359 TAAGTGTAGGAATAGTGAT
1 TAAGTGTAGGAATAGTGAT
5741378 AGGTTCGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.32, T:0.32
Consensus pattern (19 bp):
TAAGTGTAGGAATAGTGAT
Found at i:5744181 original size:30 final size:30
Alignment explanation
Indices: 5744147--5744234 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
5744137 TAAACTAAAA
*
5744147 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
5744177 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
5744207 TGAGCTAAGGTTTAGCTCGTGAGCTAAA
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAA
5744235 TACGAGCTAG
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:5744764 original size:12 final size:12
Alignment explanation
Indices: 5744747--5744772 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
5744737 TGGTAGGCAC
5744747 TTAAACACAATA
1 TTAAACACAATA
5744759 TTAAACACAATA
1 TTAAACACAATA
5744771 TT
1 TT
5744773 CCTCATCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (12 bp):
TTAAACACAATA
Found at i:5746451 original size:12 final size:12
Alignment explanation
Indices: 5746436--5746466 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
5746426 TTCTTTTTGC
5746436 TTTTCAAAGGCT
1 TTTTCAAAGGCT
5746448 TTTTCAAAGGCT
1 TTTTCAAAGGCT
5746460 TTTTCAA
1 TTTTCAA
5746467 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:5746543 original size:6 final size:6
Alignment explanation
Indices: 5746527--5746576 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
5746517 TTTCTTTTTA
*
5746527 TTTCAT TTTCTT TTTCTT CTCTTGCTT TTTCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT -T-TT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
5746576 T
1 T
5746577 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 10 0.26
6 20 0.51
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:5746559 original size:37 final size:37
Alignment explanation
Indices: 5746516--5746586 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
5746506 CTTGCCTCTC
5746516 TTTTCTTTTT-ATTTCATTTTCTTT-TTCTTCTCTTGCT
1 TTTTCTTTTTCATTTC-TTTTCTTTGTT-TTCTCTTGCT
*
5746553 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTT
5746587 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (37 bp):
TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTTGCT
Found at i:5746587 original size:16 final size:16
Alignment explanation
Indices: 5746512--5746572 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
5746502 GCCTCTTGCC
*
5746512 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
5746528 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
5746544 TCTC-TTGCTTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
5746560 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
5746573 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.30
16 17 0.46
17 9 0.24
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:5751871 original size:144 final size:144
Alignment explanation
Indices: 5751611--5751897 Score: 497
Period size: 144 Copynumber: 2.0 Consensus size: 144
5751601 GTAATCAAAG
5751611 TACCAAATTCGTATTAAAGTGAAGCTATAAGCCACAAATGACTAGTATACCTAGTCAATTTTGTT
1 TACCAAATTCGTATTAAAGTGAAGCTATAAGCCACAAATGACTAGTATACCTAGTCAATTTTGTT
* *
5751676 ATGATGAAATTGATGTACAAGTATATATATGTGGTAGGGCCGAATGGCCAATGTGATGAATGTGA
66 ATGATGAAATTGATGTACAAGCATATATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGA
5751741 AAGTATATATATGC
131 AAGTATATATATGC
5751755 TACCAAATTCGTATTAAAGTGAAGCTATAAGCCACAAATGACTAGTATACCTAGTCAATTTTGTT
1 TACCAAATTCGTATTAAAGTGAAGCTATAAGCCACAAATGACTAGTATACCTAGTCAATTTTGTT
* *
5751820 ATGATGAAATTGATGTA-AA-CATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
66 ATGATGAAATTGATGTACAAGCATATATATGTG-G-TAAGGCCGAATGGCCAATGTGATGAATGT
*
5751883 GAAAGTGTATATATG
129 GAAAGTATATATATG
5751898 TGATAAGGCC
Statistics
Matches: 136, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
142 9 0.07
143 3 0.02
144 124 0.91
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (144 bp):
TACCAAATTCGTATTAAAGTGAAGCTATAAGCCACAAATGACTAGTATACCTAGTCAATTTTGTT
ATGATGAAATTGATGTACAAGCATATATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGA
AAGTATATATATGC
Found at i:5751874 original size:22 final size:22
Alignment explanation
Indices: 5751849--5751923 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
5751839 CATGTGTATG
5751849 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
5751871 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
5751896 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
5751918 TGTGAT
1 TGTGAT
5751924 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:5751901 original size:47 final size:47
Alignment explanation
Indices: 5751849--5751951 Score: 179
Period size: 47 Copynumber: 2.2 Consensus size: 47
5751839 CATGTGTATG
*
5751849 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAA
* *
5751896 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAA
5751943 TGTGATAAG
1 TGTGATAAG
5751952 TCCCGAAGGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.33, C:0.08, G:0.32, T:0.27
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAA
Found at i:5759356 original size:18 final size:20
Alignment explanation
Indices: 5759325--5759366 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
5759315 AAAATCAGTC
*
5759325 AAAAAAGTCAAAA-T-AATA
1 AAAAAAGACAAAATTCAATA
*
5759343 AAAAAAGACGAAATTCAATA
1 AAAAAAGACAAAATTCAATA
5759363 AAAA
1 AAAA
5759367 TTTAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 11 0.55
19 1 0.05
20 8 0.40
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14
Consensus pattern (20 bp):
AAAAAAGACAAAATTCAATA
Found at i:5769310 original size:132 final size:132
Alignment explanation
Indices: 5769073--5769337 Score: 512
Period size: 132 Copynumber: 2.0 Consensus size: 132
5769063 TAACCATACA
5769073 ACTAGTACACCTATTGTGATTCCCAATACAAGAGTCAAAATAGGGACCAACATCCATATGATCCC
1 ACTAGTACACCTATTGTGATTCCCAATACAAGAGTCAAAATAGGGACCAACATCCATATGATCCC
*
5769138 ATAGACCTCTTTTAAAGATTCCAATGTGTAAAAGGAATTGATATCTTCTACTTCTGTCGTATAAA
66 ATAGACCTCTTTTAAAGATTCCAATGTGTAAAAAGAATTGATATCTTCTACTTCTGTCGTATAAA
5769203 TT
131 TT
*
5769205 ACTAGTACACCTATTGTGATTCCTAATACAAGAGTCAAAATAGGGACCAACATCCATATGATCCC
1 ACTAGTACACCTATTGTGATTCCCAATACAAGAGTCAAAATAGGGACCAACATCCATATGATCCC
5769270 ATAGACCTCTTTTAAAGATTCCAATGTGTAAAAAGAATTGATATCTTCTACTTCTGTCGTATAAA
66 ATAGACCTCTTTTAAAGATTCCAATGTGTAAAAAGAATTGATATCTTCTACTTCTGTCGTATAAA
5769335 TT
131 TT
5769337 A
1 A
5769338 TCATTTCAAC
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 131 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.31
Consensus pattern (132 bp):
ACTAGTACACCTATTGTGATTCCCAATACAAGAGTCAAAATAGGGACCAACATCCATATGATCCC
ATAGACCTCTTTTAAAGATTCCAATGTGTAAAAAGAATTGATATCTTCTACTTCTGTCGTATAAA
TT
Found at i:5771086 original size:30 final size:30
Alignment explanation
Indices: 5771052--5771148 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
5771042 TAAACTAAAA
5771052 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
5771082 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
5771112 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
5771142 TGAGCTA
1 TGAGCTA
5771149 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:5772082 original size:4 final size:4
Alignment explanation
Indices: 5772073--5772100 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
5772063 TTAAACTAAG
5772073 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
5772101 AATAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:5772105 original size:6 final size:6
Alignment explanation
Indices: 5772094--5772119 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
5772084 ATAAATAAAT
5772094 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
5772120 CTTTACAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:5772471 original size:20 final size:20
Alignment explanation
Indices: 5772425--5772471 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
5772415 AGCTCGTTTC
*
5772425 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
5772445 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
5772465 CAGCTCA
1 CAGCTCA
5772472 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:5774989 original size:142 final size:142
Alignment explanation
Indices: 5774802--5775083 Score: 519
Period size: 142 Copynumber: 2.0 Consensus size: 142
5774792 TGATTTCATC
*
5774802 TTTGCCTAAGTTGATCGTATGAAAGCGTCTTTCATTTGAGAGGTATTGAAGTTGAAAGTTATCTT
1 TTTGCCTAAGTTGATCATATGAAAGCGTCTTTCATTTGAGAGGTATTGAAGTTGAAAGTTATCTT
* *
5774867 TCGATCTTTCGGGAACCTGAAAAGTAGCAACACAAGAAAAATTCATATCTTGGTTAGTGGAAACA
66 TCGATCCTTCGGGAACCTGAAAAGTAGCAACACAAGAAAAATTCATATCTTGGTTAGTGAAAACA
5774932 TTCCTCACTACG
131 TTCCTCACTACG
*
5774944 TTTGCCTAAGTTGATCATATGAAAGCGTCTTTCATTTTAGAGGTATTGAAGTTGAAAGTTATCTT
1 TTTGCCTAAGTTGATCATATGAAAGCGTCTTTCATTTGAGAGGTATTGAAGTTGAAAGTTATCTT
*
5775009 TCGGTCCTTCGGGAACCTGAAAAGTAGCAACACAAGAAAAATTCATATCTTGGTTAGTGAAAACA
66 TCGATCCTTCGGGAACCTGAAAAGTAGCAACACAAGAAAAATTCATATCTTGGTTAGTGAAAACA
5775074 TTCCTCACTA
131 TTCCTCACTA
5775084 GCCTTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 135 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (142 bp):
TTTGCCTAAGTTGATCATATGAAAGCGTCTTTCATTTGAGAGGTATTGAAGTTGAAAGTTATCTT
TCGATCCTTCGGGAACCTGAAAAGTAGCAACACAAGAAAAATTCATATCTTGGTTAGTGAAAACA
TTCCTCACTACG
Found at i:5775151 original size:23 final size:22
Alignment explanation
Indices: 5775100--5775151 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
5775090 CCTCGTCTTT
*
5775100 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
5775122 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
5775145 TTCTTTT
1 TTCTTTT
5775152 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:5779294 original size:4 final size:4
Alignment explanation
Indices: 5779276--5779309 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
5779266 TATAAAAATT
5779276 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
5779310 AATAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:5783812 original size:35 final size:35
Alignment explanation
Indices: 5783715--5783814 Score: 87
Period size: 35 Copynumber: 2.8 Consensus size: 35
5783705 ATATCCAGCA
* *
5783715 TTCTTTGTTTCAG-CTTTCATCAC-TGATTTATTTTT
1 TTCTTTGTTTCAGCCTTT-ATC-CTTGAATTATTTGT
* * * ** *
5783750 TTCCTTCGTTTCAGCATTCATTGTTGAATTGTTTGT
1 TT-CTTTGTTTCAGCCTTTATCCTTGAATTATTTGT
5783786 TTCTTTGTTTCAGCCTTTATCCTTGAATT
1 TTCTTTGTTTCAGCCTTTATCCTTGAATT
5783815 TCAGTTCCAT
Statistics
Matches: 49, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
35 24 0.49
36 23 0.47
37 2 0.04
ACGTcount: A:0.14, C:0.18, G:0.12, T:0.56
Consensus pattern (35 bp):
TTCTTTGTTTCAGCCTTTATCCTTGAATTATTTGT
Found at i:5787769 original size:44 final size:44
Alignment explanation
Indices: 5787715--5787803 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
5787705 TCGTAGACTA
5787715 TAAATATGTACAATTCTTCACTCATTAGTAATATACGAAAGAGG
1 TAAATATGTACAATTCTTCACTCATTAGTAATATACGAAAGAGG
* * *
5787759 TAAATGTGTACAATTCTTTACTCATTAGTAATATATGAAAGAGG
1 TAAATATGTACAATTCTTCACTCATTAGTAATATACGAAAGAGG
5787803 T
1 T
5787804 TTCTCTTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (44 bp):
TAAATATGTACAATTCTTCACTCATTAGTAATATACGAAAGAGG
Found at i:5788761 original size:168 final size:168
Alignment explanation
Indices: 5788483--5788818 Score: 582
Period size: 168 Copynumber: 2.0 Consensus size: 168
5788473 GCATCTAATC
** *
5788483 AAAAACTGAAACGATAAATCTTAAATTTTTTACTAAGGGGCAAAAAACAATTTTAAGAATAATTT
1 AAAAACTGAAAAAATAAATCTCAAATTTTTTACTAAGGGGCAAAAAACAATTTTAAGAATAATTT
*
5788548 GCTGAACTGAAGTGTTGAGATTCTGGAAACCAGGACATGCAAGTCATTGACTTCCCCAGAATGAA
66 GCTGAACTAAAGTGTTGAGATTCTGGAAACCAGGACATGCAAGTCATTGACTTCCCCAGAATGAA
5788613 TCAAAAGAAAAAGAACTAAAAAGGTTTAGGTTGAAAGT
131 TCAAAAGAAAAAGAACTAAAAAGGTTTAGGTTGAAAGT
* * * *
5788651 AAAAACTGAAAAAATTAATCTCAAGTTTTTTACTAAGGGGCAAAAACCAATTTTAAGAATAGTTT
1 AAAAACTGAAAAAATAAATCTCAAATTTTTTACTAAGGGGCAAAAAACAATTTTAAGAATAATTT
* *
5788716 GCTGAACTAAAGTGTTGAGATTTTGGAAACCAGGACATGCAAGTCATTGACTTTCCCAGAATGAA
66 GCTGAACTAAAGTGTTGAGATTCTGGAAACCAGGACATGCAAGTCATTGACTTCCCCAGAATGAA
5788781 TCAAAAGAAAAAGAACTAAAAAGGTTTAGGTTGAAAGT
131 TCAAAAGAAAAAGAACTAAAAAGGTTTAGGTTGAAAGT
5788819 GAATGAGAAT
Statistics
Matches: 158, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
168 158 1.00
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.26
Consensus pattern (168 bp):
AAAAACTGAAAAAATAAATCTCAAATTTTTTACTAAGGGGCAAAAAACAATTTTAAGAATAATTT
GCTGAACTAAAGTGTTGAGATTCTGGAAACCAGGACATGCAAGTCATTGACTTCCCCAGAATGAA
TCAAAAGAAAAAGAACTAAAAAGGTTTAGGTTGAAAGT
Found at i:5802686 original size:24 final size:21
Alignment explanation
Indices: 5802655--5802709 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
5802645 AATGCCTACT
5802655 TTTTTTCTTCTTTTCCTTCCTTC
1 TTTTTTCTTC--TTCCTTCCTTC
*
5802678 TTTTCTTCTGCTTCCTTCCTTC
1 TTTT-TTCTTCTTCCTTCCTTC
*
5802700 TTCTTTCTTC
1 TTTTTTCTTC
5802710 CGTTTTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 5 0.18
22 14 0.50
23 4 0.14
24 5 0.18
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTTTCTTCTTCCTTCCTTC
Found at i:5802692 original size:22 final size:21
Alignment explanation
Indices: 5802657--5802701 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5802647 TGCCTACTTT
*
5802657 TTTTCTTCTTTTCCTTCCTTC
1 TTTTCTTCTCTTCCTTCCTTC
5802678 TTTTCTTCTGCTTCCTTCCTTC
1 TTTTCTTCT-CTTCCTTCCTTC
5802700 TT
1 TT
5802702 CTTTCTTCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTCTTCTCTTCCTTCCTTC
Found at i:5802816 original size:27 final size:26
Alignment explanation
Indices: 5802767--5802895 Score: 159
Period size: 27 Copynumber: 4.8 Consensus size: 26
5802757 AAAATCACAG
* * *
5802767 CATTGGCACCTTCTAATATGGCACCAC
1 CATTGGCGCCTCCAAATA-GGCACCAC
* *
5802794 CATTGGCGCCTGCTACATAGGCACCAC
1 CATTGGCGCCT-CCAAATAGGCACCAC
*
5802821 CATTGGCGCCTCCAAATAAGCACCAC
1 CATTGGCGCCTCCAAATAGGCACCAC
5802847 CATTGGCGCCTCCCAAATAGGCACCAC
1 CATTGGCGCCT-CCAAATAGGCACCAC
*
5802874 CATTGGAGCCTTCCAAATAGGC
1 CATTGGCGCC-TCCAAATAGGC
5802896 GCCAATACCA
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
26 23 0.26
27 62 0.70
28 4 0.04
ACGTcount: A:0.26, C:0.36, G:0.19, T:0.19
Consensus pattern (26 bp):
CATTGGCGCCTCCAAATAGGCACCAC
Found at i:5802848 original size:53 final size:54
Alignment explanation
Indices: 5802787--5802892 Score: 169
Period size: 53 Copynumber: 2.0 Consensus size: 54
5802777 TTCTAATATG
* * * *
5802787 GCACCACCATTGGCGCCTGCTACATAGGCACCACCATTGGCGCC-TCCAAATAA
1 GCACCACCATTGGCGCCTCCCAAATAGGCACCACCATTGGAGCCTTCCAAATAA
5802840 GCACCACCATTGGCGCCTCCCAAATAGGCACCACCATTGGAGCCTTCCAAATA
1 GCACCACCATTGGCGCCTCCCAAATAGGCACCACCATTGGAGCCTTCCAAATA
5802893 GGCGCCAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 40 0.83
54 8 0.17
ACGTcount: A:0.27, C:0.38, G:0.18, T:0.17
Consensus pattern (54 bp):
GCACCACCATTGGCGCCTCCCAAATAGGCACCACCATTGGAGCCTTCCAAATAA
Found at i:5802850 original size:26 final size:27
Alignment explanation
Indices: 5802781--5802895 Score: 160
Period size: 27 Copynumber: 4.3 Consensus size: 27
5802771 GGCACCTTCT
* *
5802781 AATATGGCACCACCATTGGCGCCTGCTA
1 AATA-GGCACCACCATTGGCGCCTCCCA
*
5802809 CATAGGCACCACCATTGGCGCCT-CCA
1 AATAGGCACCACCATTGGCGCCTCCCA
*
5802835 AATAAGCACCACCATTGGCGCCTCCCA
1 AATAGGCACCACCATTGGCGCCTCCCA
* *
5802862 AATAGGCACCACCATTGGAGCCTTCCA
1 AATAGGCACCACCATTGGCGCCTCCCA
5802889 AATAGGC
1 AATAGGC
5802896 GCCAATACCA
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 23 0.29
27 53 0.67
28 3 0.04
ACGTcount: A:0.28, C:0.36, G:0.19, T:0.17
Consensus pattern (27 bp):
AATAGGCACCACCATTGGCGCCTCCCA
Found at i:5806703 original size:23 final size:23
Alignment explanation
Indices: 5806677--5806746 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
5806667 AAAAATAGAT
5806677 TGGAAGGTCTAAAATTATACTAA
1 TGGAAGGTCTAAAATTATACTAA
* * *
5806700 TGGAAGAG---AAAA-AATA-GAT
1 TGGAAG-GTCTAAAATTATACTAA
5806719 TGGAAGGTCTAAAATTATACTAA
1 TGGAAGGTCTAAAATTATACTAA
5806742 TGGAA
1 TGGAA
5806747 TTATGTCTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
18 1 0.03
19 7 0.20
20 3 0.09
21 8 0.23
22 3 0.09
23 12 0.34
24 1 0.03
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26
Consensus pattern (23 bp):
TGGAAGGTCTAAAATTATACTAA
Found at i:5806721 original size:42 final size:42
Alignment explanation
Indices: 5806662--5806746 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
5806652 TAGAATAGAT
5806662 AGAGAAAAAATAGATTGGAAGGTCTAAAATTATACTAATGGA
1 AGAGAAAAAATAGATTGGAAGGTCTAAAATTATACTAATGGA
5806704 AGAGAAAAAATAGATTGGAAGGTCTAAAATTATACTAATGGA
1 AGAGAAAAAATAGATTGGAAGGTCTAAAATTATACTAATGGA
5806746 A
1 A
5806747 TTATGTCTGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.05, G:0.21, T:0.24
Consensus pattern (42 bp):
AGAGAAAAAATAGATTGGAAGGTCTAAAATTATACTAATGGA
Found at i:5806732 original size:19 final size:19
Alignment explanation
Indices: 5806668--5806733 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
5806658 AGATAGAGAA
5806668 AAAATAGATTGGAAGGTCT
1 AAAATAGATTGGAAGGTCT
* **
5806687 AAAATTATACTAATGGAAGAG-AA
1 AAAA-TAGA-T--TGGAAG-GTCT
5806710 AAAATAGATTGGAAGGTCT
1 AAAATAGATTGGAAGGTCT
5806729 AAAAT
1 AAAAT
5806734 TATACTAATG
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
18 1 0.03
19 15 0.43
20 3 0.09
21 2 0.06
22 3 0.09
23 10 0.29
24 1 0.03
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.24
Consensus pattern (19 bp):
AAAATAGATTGGAAGGTCT
Found at i:5814897 original size:48 final size:48
Alignment explanation
Indices: 5814817--5814914 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
5814807 CGTTGGTCCG
* *
5814817 ATGCTACGACATTGGGCCTCAACACATGTACTTCTACTACTTCTTTCC
1 ATGCTACAACATTGGGCCTCAACACATATACTTCTACTACTTCTTTCC
* *
5814865 ATGCTACAACATTGGGCCTCAGCACGTATACTTCTACTACTTCTTTCC
1 ATGCTACAACATTGGGCCTCAACACATATACTTCTACTACTTCTTTCC
5814913 AT
1 AT
5814915 TTAATCCAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (48 bp):
ATGCTACAACATTGGGCCTCAACACATATACTTCTACTACTTCTTTCC
Found at i:5825826 original size:15 final size:17
Alignment explanation
Indices: 5825786--5825823 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
5825776 TTTAAGACTT
5825786 TGAAAACTATAGAATTG
1 TGAAAACTATAGAATTG
5825803 TGAAAACTATAG-ATTG
1 TGAAAACTATAGAATTG
5825819 TGAAA
1 TGAAA
5825824 CTAAAGGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.29
Consensus pattern (17 bp):
TGAAAACTATAGAATTG
Found at i:5830265 original size:15 final size:17
Alignment explanation
Indices: 5830231--5830267 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
5830221 TCAAATCATA
5830231 ATAATTAACCAAATATT
1 ATAATTAACCAAATATT
*
5830248 ATAATT-ACCATA-ATT
1 ATAATTAACCAAATATT
5830263 ATAAT
1 ATAAT
5830268 AATGGTCGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 5 0.26
17 6 0.32
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATTAACCAAATATT
Found at i:5840467 original size:19 final size:20
Alignment explanation
Indices: 5840432--5840469 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
5840422 AATCATATCT
5840432 TCTAAGATTTACATATCTTA
1 TCTAAGATTTACATATCTTA
*
5840452 TCTAAGA-TTGCATATCTT
1 TCTAAGATTTACATATCTT
5840470 CGAAGATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.45
Consensus pattern (20 bp):
TCTAAGATTTACATATCTTA
Found at i:5845167 original size:56 final size:50
Alignment explanation
Indices: 5844955--5845194 Score: 243
Period size: 50 Copynumber: 4.7 Consensus size: 50
5844945 TAATAATAAC
* * *
5844955 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TGT-TTCTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * ** *
5845002 TACTGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTG
1 -A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * ** *
5845054 GTGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGGCCTCTCATCTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* *
5845104 GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGTACCTCTCATAACCTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CT---TG
*
5845160 ATGCCAATGCAATGTCCCAGACATGGTCTTACATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATG
5845195 AGATCTCTTT
Statistics
Matches: 159, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 34 0.21
50 81 0.51
51 2 0.01
52 4 0.03
53 2 0.01
56 35 0.22
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
Found at i:5859537 original size:22 final size:25
Alignment explanation
Indices: 5859483--5859537 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 25
5859473 CAAACTTTAT
5859483 TTAATAATATGTTTTGAAATAATAAA
1 TTAA-AATATGTTTTGAAATAATAAA
*
5859509 TTAAAATAT-TTTTG-AATAA-AAG
1 TTAAAATATGTTTTGAAATAATAAA
5859531 TTAAAAT
1 TTAAAAT
5859538 TAAATAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 9 0.32
23 5 0.18
24 5 0.18
25 5 0.18
26 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (25 bp):
TTAAAATATGTTTTGAAATAATAAA
Found at i:5863919 original size:29 final size:29
Alignment explanation
Indices: 5863846--5863921 Score: 104
Period size: 29 Copynumber: 2.6 Consensus size: 29
5863836 ATCAAAAAAA
5863846 TTTCTTCTCTCAA-TTTCTCCCAACAGTTT
1 TTTCTTCTCT-AATTTTCTCCCAACAGTTT
5863875 TTTCTTCTACT-ATTTTCTCCCAACA-TCTT
1 TTTCTTCT-CTAATTTTCTCCCAACAGT-TT
5863904 TTTCTTCTCTAATTTTCT
1 TTTCTTCTCTAATTTTCT
5863922 TTCCAACACA
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
28 4 0.09
29 37 0.86
30 2 0.05
ACGTcount: A:0.16, C:0.29, G:0.01, T:0.54
Consensus pattern (29 bp):
TTTCTTCTCTAATTTTCTCCCAACAGTTT
Found at i:5870409 original size:25 final size:25
Alignment explanation
Indices: 5870376--5870429 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
5870366 TGACAAAAAC
* *
5870376 AAAATCTAATCTAAAAA-GAAAAGA
1 AAAACCTAAGCTAAAAATGAAAAGA
5870400 GAAAACCTAAGCTAAAAATGAAAAGA
1 -AAAACCTAAGCTAAAAATGAAAAGA
5870426 AAAA
1 AAAA
5870430 GAAAAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (25 bp):
AAAACCTAAGCTAAAAATGAAAAGA
Found at i:5873112 original size:97 final size:96
Alignment explanation
Indices: 5873000--5873322 Score: 318
Period size: 97 Copynumber: 3.3 Consensus size: 96
5872990 TGCCGATTCA
* *
5873000 ATGTCCCAGACATGGTCTTACACTGGCACTCATCTGGTGCCGATGTCATGTCCCAGACATGGTCT
1 ATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGGTGCCGATGCCATGTCCCAGACATGGTCT
* **
5873065 TACACTGACTCTCCTTTGCCCGTGTCGATAAC
66 TACACTGACTCTCCTATGCCCGTG-CGATGCC
*
5873097 ATGTCCCAGACATGGTCTTACACTAGCACTCCTC-GGTCTATGCCGATGCCATGTCCCAGACATG
1 ATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGG----TGCCGATGCCATGTCCCAGACATG
* * * *
5873161 GTCTTACACTGGCACT-C-AT-CTCGAGCAGATGCC
62 GTCTTACACTGACTCTCCTATGCCCGTGC-GATGCC
* * * * * *
5873194 ATATCCCAGACATGGTCTTACACTGACTCTCCTCTGTCTGTACCGATGCCATGTCCTAGACATGC
1 ATGTCCCAGACATGGTCTTACACTGGCACTCCTCTG---GTGCCGATGCCATGTCCCAGACATGG
* *
5873259 TCTTACACT-AGCAT-TCCTCA-GTCTGTGCCGATGCC
63 TCTTACACTGA-C-TCTCCT-ATGCCCGTG-CGATGCC
5873294 ATGTCCCAGACATGGTCTTACACTGGCAC
1 ATGTCCCAGACATGGTCTTACACTGGCAC
5873323 ACTCACTGCC
Statistics
Matches: 184, Mismatches: 26, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
96 3 0.02
97 103 0.56
98 3 0.02
99 1 0.01
100 72 0.39
101 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.28
Consensus pattern (96 bp):
ATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGGTGCCGATGCCATGTCCCAGACATGGTCT
TACACTGACTCTCCTATGCCCGTGCGATGCC
Found at i:5873129 original size:50 final size:50
Alignment explanation
Indices: 5872989--5873322 Score: 383
Period size: 50 Copynumber: 6.8 Consensus size: 50
5872979 TCGTATATCG
* * *
5872989 GTGCCGATTCAATGTCCCAGACATGGTCTTACACTGGCACTCATCTG---
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGTCT
* * * * * *
5873036 GTGCCGATGTCATGTCCCAGACATGGTCTTACACTGACTCTCCTTTGCCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGTCT
* ** * *
5873086 GTGTCGATAACATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGTCT
* *
5873136 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATC--TC-
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGTCT
* * * * *
5873183 GAGCAGATGCCATATCCCAGACATGGTCTTACACTGACTCTCCTCTGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGTCT
* * * * * *
5873233 GTACCGATGCCATGTCCTAGACATGCTCTTACACTAGCATTCCTCAGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGTCT
5873283 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
5873323 ACTCACTGCC
Statistics
Matches: 235, Mismatches: 46, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
47 78 0.33
48 2 0.01
49 2 0.01
50 153 0.65
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.28
Consensus pattern (50 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTGTCT
Found at i:5873257 original size:147 final size:147
Alignment explanation
Indices: 5872990--5873322 Score: 495
Period size: 147 Copynumber: 2.3 Consensus size: 147
5872980 CGTATATCGG
* * * * * * *
5872990 TGCCGATTCAATGTCCCAGACATGGTCTTACACTGGCACTCATCTGGTGCCGATGTCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCAGATGCCATATCCCA
* ** *
5873055 GACATGGTCTTACACTGACTCTCCTTTGCCCGTGTCGATAACATGTCCCAGACATGGTCTTACAC
66 GACATGGTCTTACACTGACTCTCCTCTGCCCGTACCGATAACATGTCCCAGACATGCTCTTACAC
*
5873120 TAGCACTCCTCGGTCTA
131 TAGCACTCCTCAGTCTA
5873137 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCAGATGCCATATCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCAGATGCCATATCCCA
* * ** *
5873202 GACATGGTCTTACACTGACTCTCCTCTGTCTGTACCGATGCCATGTCCTAGACATGCTCTTACAC
66 GACATGGTCTTACACTGACTCTCCTCTGCCCGTACCGATAACATGTCCCAGACATGCTCTTACAC
* *
5873267 TAGCATTCCTCAGTCTG
131 TAGCACTCCTCAGTCTA
5873284 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
5873323 ACTCACTGCC
Statistics
Matches: 167, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
147 167 1.00
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.28
Consensus pattern (147 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCAGATGCCATATCCCA
GACATGGTCTTACACTGACTCTCCTCTGCCCGTACCGATAACATGTCCCAGACATGCTCTTACAC
TAGCACTCCTCAGTCTA
Found at i:5877653 original size:141 final size:141
Alignment explanation
Indices: 5877449--5877704 Score: 494
Period size: 141 Copynumber: 1.8 Consensus size: 141
5877439 TTGGAAACTC
* *
5877449 TTGGAAAAATTTAGAAAATTTTTGTCAAAACAGGGGTCACACACTCGTGTGGTTTTGAAGTTGGC
1 TTGGAAAAATTTAGAAAATTTTTGTCAAAACAGGGGTCACACACTCATGTGGTTTGGAAGTTGGC
5877514 TATTTTCCAAGCCAATTCCCCACTCTAAAACACAAACTCTCCTGTATCCATTTCATCAACATGTA
66 TATTTTCCAAGCCAATTCCCCACTCTAAAACACAAACTCTCCTGTATCCATTTCATCAACATGTA
5877579 TCATACTATAA
131 TCATACTATAA
5877590 TTGGAAAAATTTAGAAAATTTTTGTCAAAACAGGGGTCACACACTCATGTGGTTTGGAAGTTGGC
1 TTGGAAAAATTTAGAAAATTTTTGTCAAAACAGGGGTCACACACTCATGTGGTTTGGAAGTTGGC
5877655 TATTTTCCAAGCCAATTCCCCACTCTAAAACACAAACTCTCCTGTATCCA
66 TATTTTCCAAGCCAATTCCCCACTCTAAAACACAAACTCTCCTGTATCCA
5877705 ATTTTGCTTA
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
141 113 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.31
Consensus pattern (141 bp):
TTGGAAAAATTTAGAAAATTTTTGTCAAAACAGGGGTCACACACTCATGTGGTTTGGAAGTTGGC
TATTTTCCAAGCCAATTCCCCACTCTAAAACACAAACTCTCCTGTATCCATTTCATCAACATGTA
TCATACTATAA
Found at i:5879147 original size:47 final size:48
Alignment explanation
Indices: 5879080--5879266 Score: 205
Period size: 50 Copynumber: 3.8 Consensus size: 48
5879070 TCGTATATCG
* *
5879080 GTGCCGATTCCATGTCCCAGACATGGTCTTACACTGGCACTCATCT-T
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCT
* * * *
5879127 GAGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATCTGCCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCT--CT
* ** * *
5879177 GTGCTGATGCCATGTCCCAGATGTGGTCTTAAACTAGCACTCCTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATC--TCT
* * *
5879227 GTGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
5879267 ACTCACTACC
Statistics
Matches: 115, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
47 41 0.36
50 73 0.63
52 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCT
Found at i:5879259 original size:100 final size:97
Alignment explanation
Indices: 5879080--5879261 Score: 247
Period size: 97 Copynumber: 1.8 Consensus size: 97
5879070 TCGTATATCG
* * *
5879080 GTGCCGATTCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTTGAGCCGATGCCATGTCCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCACTCATCTTGAGCCGATGCCATGTCCC
5879145 AGACATGGTCTTACACTAACTCTCATCTGCCC
66 AGACATGGTCTTACACTAACTCTCATCTGCCC
* ** * * *
5879177 GTGCTGATGCCATGTCCCAGATGTGGTCTTAAACTAGCACTCCTCGGTCTGTGCTGATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCACTCATC--T-TGAGCCGATGCCATGT
*
5879242 CCTAGACATGGTCTTACACT
63 CCCAGACATGGTCTTACACT
5879262 GGCACACTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
97 38 0.53
99 1 0.01
100 33 0.46
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.29
Consensus pattern (97 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCACTCATCTTGAGCCGATGCCATGTCCC
AGACATGGTCTTACACTAACTCTCATCTGCCC
Found at i:5888415 original size:13 final size:14
Alignment explanation
Indices: 5888388--5888416 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5888378 CAAAAATTAT
5888388 AATTAAAGTAAAAG
1 AATTAAAGTAAAAG
5888402 AATTAAAG-AAAAG
1 AATTAAAGTAAAAG
5888415 AA
1 AA
5888417 AGATAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (14 bp):
AATTAAAGTAAAAG
Found at i:5890331 original size:20 final size:21
Alignment explanation
Indices: 5890292--5890331 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
5890282 ATTTTTCTAT
**
5890292 CACTTCAATTTTTGCTCTGTC
1 CACTTCAATTCCTGCTCTGTC
5890313 CACTTCAATTCCT-CTCTGT
1 CACTTCAATTCCTGCTCTGT
5890332 GATATCCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.33, G:0.07, T:0.45
Consensus pattern (21 bp):
CACTTCAATTCCTGCTCTGTC
Found at i:5894452 original size:281 final size:279
Alignment explanation
Indices: 5893719--5894578 Score: 1585
Period size: 279 Copynumber: 3.1 Consensus size: 279
5893709 AGTTGAAATA
*
5893719 AAAAAATAAGTTAAAATAGTGTCCTAAAAAATAAATTATATATATGTATAGATAAATAAAATGAT
1 AAAAAA-AA-TTAAAATAGGGTCCTAAAAAATAAATTATATATATGTATAGATAAATAAAATGAT
*
5893784 GTAATAATATATTATATACTCGTATATGTTTTAATAAAATGATTTAATATAAGTTGTATATAGAT
64 GTAATAATGTATTATATACTCGTATATGTTTTAATAAAATGATTTAATATAAGTTGTATATAGAT
* * * *
5893849 ATAAAATAGTATTGTATAAAAATATTAAAAACCTAAAATCATATTACACAATAACCTAAAATAAT
129 ATAAAATAATATTGTATAAAAATATTAAAAACCTAAAATAATATTACATAATAACATAAAATAAT
5893914 TTATATACGTAAATAATGGCAATTAAATATACAAACTAATATAATAACAATATCAATAATAATAT
194 TTATATACGTAAATAATGGCAATTAAATATACAAACTAATATAATAACAATATCAATAATAATAT
*
5893979 CAGTAGCAATAATGTGATAAT
259 CAGTAGTAATAATGTGATAAT
5894000 AAAAAAAATTAAAATAGGGTCCTAAAAAATAAATTATATATATGTATAGATAAATAAAATGATGT
1 AAAAAAAATTAAAATAGGGTCCTAAAAAATAAATTATATATATGTATAGATAAATAAAATGATGT
5894065 AATAATGTATTATATACTCGTATATGTTTTAATAAAATGATTTAATATAAGTTGTATATAGATAT
66 AATAATGTATTATATACTCGTATATGTTTTAATAAAATGATTTAATATAAGTTGTATATAGATAT
5894130 AAAATAATATTGTATAAAAATATTAAAAACCTAAAATAATATTACATAATAACATAAAATAATTT
131 AAAATAATATTGTATAAAAATATTAAAAACCTAAAATAATATTACATAATAACATAAAATAATTT
5894195 ATATACGTAAATAATGGCAATTAAATATACAAACTAATATAATAACAATATCAATAATAATATCA
196 ATATACGTAAATAATGGCAATTAAATATACAAACTAATATAATAACAATATCAATAATAATATCA
*
5894260 GTAGTAATAATATGATAAT
261 GTAGTAATAATGTGATAAT
5894279 AAAAAAAATTAAAATAGGGTCCTAAAAAATAAATTATATATATATGTATAGATAAATAAAATGAT
1 AAAAAAAATTAAAATAGGGTCCTAAAAAATAAA-T-TATATATATGTATAGATAAATAAAATGAT
5894344 GTAATAATGTATTATATACTCGTATATGTTTTAATAAAATGATTTAATATAAGTTGTATATAGAT
64 GTAATAATGTATTATATACTCGTATATGTTTTAATAAAATGATTTAATATAAGTTGTATATAGAT
5894409 ATAAAATAATATTGTATAAAAATATTAAAAACCTAAAATAATATTACATAATAACATAAAATAAT
129 ATAAAATAATATTGTATAAAAATATTAAAAACCTAAAATAATATTACATAATAACATAAAATAAT
5894474 TTATATACGTAAATAATGGCAATTAAATATACAAACTAATATAATAACAATATCAATAATAATAT
194 TTATATACGTAAATAATGGCAATTAAATATACAAACTAATATAATAACAATATCAATAATAATAT
5894539 CAGTAGTAATAATGGTGATAAT
259 CAGTAGTAATAAT-GTGATAAT
5894561 AATAAAAAATTAATAATA
1 AA-AAAAAATTAA-AATA
5894579 ATAGATTAAT
Statistics
Matches: 565, Mismatches: 9, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
279 296 0.52
280 3 0.01
281 243 0.43
282 9 0.02
283 10 0.02
284 4 0.01
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.34
Consensus pattern (279 bp):
AAAAAAAATTAAAATAGGGTCCTAAAAAATAAATTATATATATGTATAGATAAATAAAATGATGT
AATAATGTATTATATACTCGTATATGTTTTAATAAAATGATTTAATATAAGTTGTATATAGATAT
AAAATAATATTGTATAAAAATATTAAAAACCTAAAATAATATTACATAATAACATAAAATAATTT
ATATACGTAAATAATGGCAATTAAATATACAAACTAATATAATAACAATATCAATAATAATATCA
GTAGTAATAATGTGATAAT
Found at i:5894594 original size:14 final size:14
Alignment explanation
Indices: 5894557--5894595 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
5894547 ATAATGGTGA
*
5894557 TAATAATAAAAAAT
1 TAATAATAATAAAT
*
5894571 TAATAATAATAGAT
1 TAATAATAATAAAT
5894585 TAATAATAATA
1 TAATAATAATA
5894596 TTACTGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
TAATAATAATAAAT
Found at i:5896239 original size:44 final size:44
Alignment explanation
Indices: 5896191--5896303 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
5896181 TCAATCTATT
* *
5896191 CCACTGCAACCTC-GGAGAGATAAGATTTGCTTCT-TCGGTCTGCC
1 CCACTGCAACCTCAGG-GAGATAAGAATTG-TTCTCTCAGTCTGCC
** * * * *
5896235 CCACTGTGACTTCAGGGGGATAAGAATTGTTTTCTCAGTCTGCT
1 CCACTGCAACCTCAGGGAGATAAGAATTGTTCTCTCAGTCTGCC
5896279 CCACTGCAACCTCAGGGAGATAAGA
1 CCACTGCAACCTCAGGGAGATAAGA
5896304 CCTAATGCGA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
43 3 0.05
44 50 0.91
45 2 0.04
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (44 bp):
CCACTGCAACCTCAGGGAGATAAGAATTGTTCTCTCAGTCTGCC
Found at i:5896491 original size:217 final size:216
Alignment explanation
Indices: 5896104--5896560 Score: 600
Period size: 217 Copynumber: 2.1 Consensus size: 216
5896094 CAATCTGTTG
* * *
5896104 TACTGCAACTTTAGAGAGATAAGATCCATGGTTTTAATCCACTCCACTAGAACTTCAGGGAGATA
1 TACTGCAAC-TTAGAGAGATAAGATCCATGATTTTAATCCACTCCACTACAACTTCAAGGAGATA
* * *
5896169 GGATTATCGACTTCAATCTATTCCACTGCAACCTCGGAGAGATAAGATTTGCTTCTTCGGTCTGC
65 GGATTATCGACTTCAATCTACTCCACTGCAACCTCGGAGAGATAAGATTTGCATCTTCGATCTGC
** * * * *
5896234 CCCACTGTGACTTCAGGGGGATAAGAATTGTTTTCTCAGTCTGCTCCACTGCAACCTCAGGGAGA
130 CCCACTGCAACTTCAGAGAGATAAGAACTGTTTACTCAGTCTGCTCCACTGCAACCTCAGGGAGA
*
5896299 TAAGA-CCTAATGCGATCCACTT
195 TAAGAGCC-AATGCGATCCACTC
* * *
5896321 TACTGCAACTTCAGAGAGATAAGATCTATTATTTTAATCCGCTCCACTACAACTTCAAGGAGATA
1 TACTGCAACTT-AGAGAGATAAGATCCATGATTTTAATCCACTCCACTACAACTTCAAGGAGATA
* * * *
5896386 GGATTATCGGCTTC-TTCTGCTCTACTGCAACCTCAGG-GAGATAAGATTTGCCATCTTCGATCT
65 GGATTATCGACTTCAATCTACTCCACTGCAACCTC-GGAGAGATAAGATTTG-CATCTTCGATCT
* * **
5896449 GTCCCACTGCAACTTCAGAGAGATAAGACCTGTTTACTCAGTCTGCTCCGTTGCAACCTCAGGGA
128 GCCCCACTGCAACTTCAGAGAGATAAGAACTGTTTACTCAGTCTGCTCCACTGCAACCTCAGGGA
5896514 GATAAGAGCCAATGCGATCCACTC
193 GATAAGAGCCAATGCGATCCACTC
*
5896538 TACCGCAAACTT-GA-AGATAAGAT
1 TACTGC-AACTTAGAGAGATAAGAT
5896561 TCACCGTCTT
Statistics
Matches: 210, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
215 9 0.04
216 33 0.16
217 161 0.77
218 7 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (216 bp):
TACTGCAACTTAGAGAGATAAGATCCATGATTTTAATCCACTCCACTACAACTTCAAGGAGATAG
GATTATCGACTTCAATCTACTCCACTGCAACCTCGGAGAGATAAGATTTGCATCTTCGATCTGCC
CCACTGCAACTTCAGAGAGATAAGAACTGTTTACTCAGTCTGCTCCACTGCAACCTCAGGGAGAT
AAGAGCCAATGCGATCCACTC
Found at i:5896941 original size:128 final size:128
Alignment explanation
Indices: 5896546--5897164 Score: 954
Period size: 128 Copynumber: 4.8 Consensus size: 128
5896536 TCTACCGCAA
* * * *
5896546 ACTTGAAGATAAGATTCACCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAATATCTATAA
1 ACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAA
* * * *
5896611 TTTCCCAATCTTTTCCACTACTGACCAGGGATATAGGACTTGTGGCTTAAATCTTCTTCCTTAC
66 TTT-CCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC
* *
5896675 ACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAATATATGTAA
1 ACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAA
5896740 TTTCCAAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC
66 TTTCC-AACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC
* * * *
5896804 ACTTAAAGATAAGATTCGCTGTCTTCGATCTGCTCTGCTATTGCTTAGGGAGACAAGATCTGTAA
1 ACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAA
*
5896869 TTTCCAACCTATTCCACTGCTGACCAGGGATATAGAACTTGTGGCTTAAATCTGCTTCCTTAC
66 TTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC
* * *
5896932 TCTTGAAGATAAGATTTGCCG-CTTTCGATCTGCTCCGCTACTACTTAGGGAGACAAGATCTGTA
1 ACTTGAAGATAAGATTCGCCGTC-TTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTA
5896996 ATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC
65 ATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC
* * * * *
5897060 TCTTGAAGATAAGATTTGCC-ACTTTCGATCTGCTTCGCTACTACTTAGGGAGACAAGATCTGTA
1 ACTTGAAGATAAGATTCGCCGTC-TTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTA
* * *
5897124 ATTTCCAACCTATTCCATTGCTGACTAGGGATATAAGACTT
65 ATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTT
5897165 ATGATTTCAT
Statistics
Matches: 460, Mismatches: 27, Indels: 7
0.93 0.05 0.01
Matches are distributed among these distances:
127 1 0.00
128 277 0.60
129 182 0.40
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (128 bp):
ACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAA
TTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTAC
Found at i:5899394 original size:19 final size:19
Alignment explanation
Indices: 5899346--5899395 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 19
5899336 GACTTTGACT
* *
5899346 TTGATTTTTCTTTTTCTTC
1 TTGATTTTGCTTTTTCATC
*
5899365 TT--TTTTG-TTTTTGATC
1 TTGATTTTGCTTTTTCATC
5899381 TTGATTTTGCTTTTT
1 TTGATTTTGCTTTTT
5899396 TTTTGGGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
16 9 0.36
17 4 0.16
18 5 0.20
19 7 0.28
ACGTcount: A:0.06, C:0.10, G:0.10, T:0.74
Consensus pattern (19 bp):
TTGATTTTGCTTTTTCATC
Found at i:5904059 original size:23 final size:22
Alignment explanation
Indices: 5904033--5904080 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
5904023 ATTAAAAACC
5904033 TAAAATAATATTACATA-ATAACA
1 TAAAATAAT-TTACATACATAA-A
*
5904056 TAAAATAATTTATATACATAAA
1 TAAAATAATTTACATACATAAA
5904078 TAA
1 TAA
5904081 TGGCAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAATTTACATACATAAA
Found at i:5919640 original size:965 final size:965
Alignment explanation
Indices: 5917771--5919700 Score: 3860
Period size: 965 Copynumber: 2.0 Consensus size: 965
5917761 ATGATGTATT
5917771 TGTAGATAGAATTTAGGATTTAAAACATGATGCTGGTTTTGATGAAGTTGCAATCTTATTCATTC
1 TGTAGATAGAATTTAGGATTTAAAACATGATGCTGGTTTTGATGAAGTTGCAATCTTATTCATTC
5917836 ATACTTATGTATTGTCGATGCAATATTTTGTCATCTGAATGTGACTCATTCATTGGGATTTTAGG
66 ATACTTATGTATTGTCGATGCAATATTTTGTCATCTGAATGTGACTCATTCATTGGGATTTTAGG
5917901 TGCTTCAAGTTGCTAGAATGATCATTTGCCTTAGTGAATTTTTGTGTAGCCTTGCTTGTTTCTGC
131 TGCTTCAAGTTGCTAGAATGATCATTTGCCTTAGTGAATTTTTGTGTAGCCTTGCTTGTTTCTGC
5917966 TTTACTTGAGGACAATTAAAAACTCAAGTTTGGGGGTGTGATAGTACTAGAAAGAACATATGTTT
196 TTTACTTGAGGACAATTAAAAACTCAAGTTTGGGGGTGTGATAGTACTAGAAAGAACATATGTTT
5918031 TCTCCCTACTTATTGGTTAATTTGTCCCCATTTAGTTATATTCAGCACATATTTTAGCATTTCAT
261 TCTCCCTACTTATTGGTTAATTTGTCCCCATTTAGTTATATTCAGCACATATTTTAGCATTTCAT
5918096 TTTACAATTTATATTTTATAACTCAGTGGATCTTAGCCTATTTATCCTTAATTTTCTTATGTTTT
326 TTTACAATTTATATTTTATAACTCAGTGGATCTTAGCCTATTTATCCTTAATTTTCTTATGTTTT
5918161 GGTACTGATGTCGCTGCATCAAAATTTCACATTGCGCCCAGAATTGTCGCCGCATCTGATAGCTG
391 GGTACTGATGTCGCTGCATCAAAATTTCACATTGCGCCCAGAATTGTCGCCGCATCTGATAGCTG
5918226 TCTGGATAGGAACAAAAATGCATGAGCTGTCTAATCTGGTACAACTAACTTGTATGTACACAAGC
456 TCTGGATAGGAACAAAAATGCATGAGCTGTCTAATCTGGTACAACTAACTTGTATGTACACAAGC
5918291 AACATGATTCTGATGAAAGGACACCTAGGTTATTTGGGAAAAAGATAAATATTCACATAAAAAGA
521 AACATGATTCTGATGAAAGGACACCTAGGTTATTTGGGAAAAAGATAAATATTCACATAAAAAGA
5918356 CAAAAAAGGGGAGCTTTGGTATGACCATCTTCTTGAACCTATCCTTTGAAAATTTTGGCTATGGT
586 CAAAAAAGGGGAGCTTTGGTATGACCATCTTCTTGAACCTATCCTTTGAAAATTTTGGCTATGGT
5918421 GGCTTAAGTATCCTACGGGTGAACCGACGTGAAATGGATGCAGACCAGCTCTTGACGAGGAGCCC
651 GGCTTAAGTATCCTACGGGTGAACCGACGTGAAATGGATGCAGACCAGCTCTTGACGAGGAGCCC
5918486 TAAGTATGACACAAAAGGGAATAGAAAGATTCAAGTGGAGTTGTCTAGGAATAGTATTCTCCAAT
716 TAAGTATGACACAAAAGGGAATAGAAAGATTCAAGTGGAGTTGTCTAGGAATAGTATTCTCCAAT
5918551 TGTTTCTTTTATTTTTATTTTCTAAATGCTGGTGAGTACTTTCTATTTCATGTTAGTATGGAAGT
781 TGTTTCTTTTATTTTTATTTTCTAAATGCTGGTGAGTACTTTCTATTTCATGTTAGTATGGAAGT
5918616 ACACATGATTTCAGGGTTAGATGTTATTTTATTCAATCTTGCTTCTACTATTTAATCTTTAGGTT
846 ACACATGATTTCAGGGTTAGATGTTATTTTATTCAATCTTGCTTCTACTATTTAATCTTTAGGTT
5918681 TGAATGTTTTTAGCACAAAAGTGTTATTGCGGCCACTGACTCTGGAAGGTGCAAC
911 TGAATGTTTTTAGCACAAAAGTGTTATTGCGGCCACTGACTCTGGAAGGTGCAAC
5918736 TGTAGATAGAATTTAGGATTTAAAACATGATGCTGGTTTTGATGAAGTTGCAATCTTATTCATTC
1 TGTAGATAGAATTTAGGATTTAAAACATGATGCTGGTTTTGATGAAGTTGCAATCTTATTCATTC
5918801 ATACTTATGTATTGTCGATGCAATATTTTGTCATCTGAATGTGACTCATTCATTGGGATTTTAGG
66 ATACTTATGTATTGTCGATGCAATATTTTGTCATCTGAATGTGACTCATTCATTGGGATTTTAGG
5918866 TGCTTCAAGTTGCTAGAATGATCATTTGCCTTAGTGAATTTTTGTGTAGCCTTGCTTGTTTCTGC
131 TGCTTCAAGTTGCTAGAATGATCATTTGCCTTAGTGAATTTTTGTGTAGCCTTGCTTGTTTCTGC
5918931 TTTACTTGAGGACAATTAAAAACTCAAGTTTGGGGGTGTGATAGTACTAGAAAGAACATATGTTT
196 TTTACTTGAGGACAATTAAAAACTCAAGTTTGGGGGTGTGATAGTACTAGAAAGAACATATGTTT
5918996 TCTCCCTACTTATTGGTTAATTTGTCCCCATTTAGTTATATTCAGCACATATTTTAGCATTTCAT
261 TCTCCCTACTTATTGGTTAATTTGTCCCCATTTAGTTATATTCAGCACATATTTTAGCATTTCAT
5919061 TTTACAATTTATATTTTATAACTCAGTGGATCTTAGCCTATTTATCCTTAATTTTCTTATGTTTT
326 TTTACAATTTATATTTTATAACTCAGTGGATCTTAGCCTATTTATCCTTAATTTTCTTATGTTTT
5919126 GGTACTGATGTCGCTGCATCAAAATTTCACATTGCGCCCAGAATTGTCGCCGCATCTGATAGCTG
391 GGTACTGATGTCGCTGCATCAAAATTTCACATTGCGCCCAGAATTGTCGCCGCATCTGATAGCTG
5919191 TCTGGATAGGAACAAAAATGCATGAGCTGTCTAATCTGGTACAACTAACTTGTATGTACACAAGC
456 TCTGGATAGGAACAAAAATGCATGAGCTGTCTAATCTGGTACAACTAACTTGTATGTACACAAGC
5919256 AACATGATTCTGATGAAAGGACACCTAGGTTATTTGGGAAAAAGATAAATATTCACATAAAAAGA
521 AACATGATTCTGATGAAAGGACACCTAGGTTATTTGGGAAAAAGATAAATATTCACATAAAAAGA
5919321 CAAAAAAGGGGAGCTTTGGTATGACCATCTTCTTGAACCTATCCTTTGAAAATTTTGGCTATGGT
586 CAAAAAAGGGGAGCTTTGGTATGACCATCTTCTTGAACCTATCCTTTGAAAATTTTGGCTATGGT
5919386 GGCTTAAGTATCCTACGGGTGAACCGACGTGAAATGGATGCAGACCAGCTCTTGACGAGGAGCCC
651 GGCTTAAGTATCCTACGGGTGAACCGACGTGAAATGGATGCAGACCAGCTCTTGACGAGGAGCCC
5919451 TAAGTATGACACAAAAGGGAATAGAAAGATTCAAGTGGAGTTGTCTAGGAATAGTATTCTCCAAT
716 TAAGTATGACACAAAAGGGAATAGAAAGATTCAAGTGGAGTTGTCTAGGAATAGTATTCTCCAAT
5919516 TGTTTCTTTTATTTTTATTTTCTAAATGCTGGTGAGTACTTTCTATTTCATGTTAGTATGGAAGT
781 TGTTTCTTTTATTTTTATTTTCTAAATGCTGGTGAGTACTTTCTATTTCATGTTAGTATGGAAGT
5919581 ACACATGATTTCAGGGTTAGATGTTATTTTATTCAATCTTGCTTCTACTATTTAATCTTTAGGTT
846 ACACATGATTTCAGGGTTAGATGTTATTTTATTCAATCTTGCTTCTACTATTTAATCTTTAGGTT
5919646 TGAATGTTTTTAGCACAAAAGTGTTATTGCGGCCACTGACTCTGGAAGGTGCAAC
911 TGAATGTTTTTAGCACAAAAGTGTTATTGCGGCCACTGACTCTGGAAGGTGCAAC
5919701 GACAGTTCAA
Statistics
Matches: 965, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
965 965 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (965 bp):
TGTAGATAGAATTTAGGATTTAAAACATGATGCTGGTTTTGATGAAGTTGCAATCTTATTCATTC
ATACTTATGTATTGTCGATGCAATATTTTGTCATCTGAATGTGACTCATTCATTGGGATTTTAGG
TGCTTCAAGTTGCTAGAATGATCATTTGCCTTAGTGAATTTTTGTGTAGCCTTGCTTGTTTCTGC
TTTACTTGAGGACAATTAAAAACTCAAGTTTGGGGGTGTGATAGTACTAGAAAGAACATATGTTT
TCTCCCTACTTATTGGTTAATTTGTCCCCATTTAGTTATATTCAGCACATATTTTAGCATTTCAT
TTTACAATTTATATTTTATAACTCAGTGGATCTTAGCCTATTTATCCTTAATTTTCTTATGTTTT
GGTACTGATGTCGCTGCATCAAAATTTCACATTGCGCCCAGAATTGTCGCCGCATCTGATAGCTG
TCTGGATAGGAACAAAAATGCATGAGCTGTCTAATCTGGTACAACTAACTTGTATGTACACAAGC
AACATGATTCTGATGAAAGGACACCTAGGTTATTTGGGAAAAAGATAAATATTCACATAAAAAGA
CAAAAAAGGGGAGCTTTGGTATGACCATCTTCTTGAACCTATCCTTTGAAAATTTTGGCTATGGT
GGCTTAAGTATCCTACGGGTGAACCGACGTGAAATGGATGCAGACCAGCTCTTGACGAGGAGCCC
TAAGTATGACACAAAAGGGAATAGAAAGATTCAAGTGGAGTTGTCTAGGAATAGTATTCTCCAAT
TGTTTCTTTTATTTTTATTTTCTAAATGCTGGTGAGTACTTTCTATTTCATGTTAGTATGGAAGT
ACACATGATTTCAGGGTTAGATGTTATTTTATTCAATCTTGCTTCTACTATTTAATCTTTAGGTT
TGAATGTTTTTAGCACAAAAGTGTTATTGCGGCCACTGACTCTGGAAGGTGCAAC
Done.