Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 23 of 185
Found at i:6675276 original size:46 final size:46
Alignment explanation
Indices: 6675175--6675392 Score: 210
Period size: 46 Copynumber: 4.7 Consensus size: 46
6675165 ATGTAACCGT
* * *
6675175 GCCGATGCATGTCCTAAACATGTCTTACACTAG--CACATCTCGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCG-AG
* * *
6675219 GCCGACGCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAG
* * *
6675265 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACAT-CTCGAG
** * * * * * * *
6675311 GATGATGCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAG
6675357 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC
6675393 ACACGAATCT
Statistics
Matches: 143, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
44 28 0.20
45 3 0.02
46 85 0.59
47 15 0.10
48 12 0.08
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAG
Found at i:6682637 original size:28 final size:29
Alignment explanation
Indices: 6682584--6682638 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
6682574 ACAGAGGTTT
6682584 TCACACGGCCGAGCACACGCCCGTGTCCC
1 TCACACGGCCGAGCACACGCCCGTGTCCC
* *
6682613 TCACACGGCCTAG-ACACGCCTGTGTC
1 TCACACGGCCGAGCACACGCCCGTGTC
6682639 ATCGCCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.18, C:0.44, G:0.24, T:0.15
Consensus pattern (29 bp):
TCACACGGCCGAGCACACGCCCGTGTCCC
Found at i:6684436 original size:47 final size:47
Alignment explanation
Indices: 6684372--6684544 Score: 192
Period size: 47 Copynumber: 3.7 Consensus size: 47
6684362 ATCCATAAGT
*
6684372 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * *
6684419 GAACTAGGACTCAACTCAACGAGTTCGGA--CATTCGTATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGT-TACATCTCA-C
*
6684465 GAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
6684512 AAACTCGGATTCAACTCAACGAGTTCAGATGCC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
6684545 CAAATATCCA
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
45 3 0.03
46 33 0.33
47 62 0.61
48 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:6684459 original size:93 final size:93
Alignment explanation
Indices: 6684325--6684537 Score: 327
Period size: 93 Copynumber: 2.3 Consensus size: 93
6684315 CGCCCATAAG
* * * * * *
6684325 CGAACTCGCACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
6684390 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
6684418 CGAACTAGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
6684483 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
6684511 CAAACTCGGATTCAACTCAACGAGTTC
1 CGAACTCGGACTCAACTCAACGAGTTC
6684538 AGATGCCCAA
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 108 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:6684493 original size:46 final size:46
Alignment explanation
Indices: 6684318--6684493 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
6684308 TGTAACCCGC
* * * * *
6684318 CCATAAGCGAACTCGCACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
* * *
6684364 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTA--T
* * * *
6684410 ACATCTCA-CGAACTAGGACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
* * *
6684457 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
6684494 TGCCTAGTTA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 63 0.61
47 29 0.28
48 2 0.02
49 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
Found at i:6686728 original size:42 final size:42
Alignment explanation
Indices: 6686650--6686738 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
6686640 TAACATATAA
6686650 CACATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGC
1 CACATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGC
6686692 TCACATCCATAATGAACTC-GACCTCTCAACGAGCTCGGATGC
1 -CACATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGC
6686734 CACAT
1 CACAT
6686739 ATCTCACGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
41 5 0.11
42 23 0.50
43 18 0.39
ACGTcount: A:0.30, C:0.34, G:0.16, T:0.20
Consensus pattern (42 bp):
CACATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGC
Found at i:6696449 original size:80 final size:80
Alignment explanation
Indices: 6696332--6696489 Score: 289
Period size: 80 Copynumber: 2.0 Consensus size: 80
6696322 TGATAAAAAG
* *
6696332 ACCTAATTGCGTAAAATGTAAAAGTGGTCTTCTATTTGTTAAAGTGCTTAATTGTTATGTTTTAT
1 ACCTAATCGCGTAAAATGTAAAAGTGGTCTTCTATTTGTTAAAGTGCTTAATTGTTATGTCTTAT
6696397 TAAAGGAGAGGTCTC
66 TAAAGGAGAGGTCTC
*
6696412 ACCTAATCGCGTAAAATGTAAAAGTGGTTTTCTATTTGTTAAAGTGCTTAATTGTTATGTCTTAT
1 ACCTAATCGCGTAAAATGTAAAAGTGGTCTTCTATTTGTTAAAGTGCTTAATTGTTATGTCTTAT
6696477 TAAAGGAGAGGTC
66 TAAAGGAGAGGTC
6696490 CTTAAGATAC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (80 bp):
ACCTAATCGCGTAAAATGTAAAAGTGGTCTTCTATTTGTTAAAGTGCTTAATTGTTATGTCTTAT
TAAAGGAGAGGTCTC
Found at i:6699499 original size:28 final size:28
Alignment explanation
Indices: 6699461--6699642 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
6699451 TAAATTGTAC
*
6699461 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
6699489 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
6699517 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
6699545 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
6699573 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
6699601 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
6699628 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6699643 GACTTAATAT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 125 0.84
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:6702538 original size:25 final size:25
Alignment explanation
Indices: 6702487--6702552 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
6702477 AGAGTTGCTC
**
6702487 ACACGAGTTGTGAATATAAATGTTT
1 ACACGAGTTGTGAATATAAATACTT
*
6702512 ACACGAGTTGTGAATATAATTACTT
1 ACACGAGTTGTGAATATAAATACTT
**
6702537 ACACGAACTGTGAATA
1 ACACGAGTTGTGAATA
6702553 CGGCTCTGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (25 bp):
ACACGAGTTGTGAATATAAATACTT
Found at i:6708231 original size:40 final size:41
Alignment explanation
Indices: 6708148--6708340 Score: 261
Period size: 40 Copynumber: 4.8 Consensus size: 41
6708138 ATTTCCAAAC
* * *
6708148 CAAAGTGCCTTCGGGATTTAG-CCGGATATAG-CAACTCGTA
1 CAAA-TGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCA
*
6708188 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCA
* * *
6708228 CAAAAGCCTTCGGAACTTAGCCCGGATATAG-CAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCA
*
6708268 CAAACGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCA
*
6708308 CAACTGCCTTCGGGACTTAGCCCGGATATAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTC
6708341 CGAATAATCA
Statistics
Matches: 136, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 15 0.11
40 117 0.86
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCA
Found at i:6708287 original size:80 final size:80
Alignment explanation
Indices: 6708154--6708338 Score: 291
Period size: 80 Copynumber: 2.3 Consensus size: 80
6708144 AAACCAAAGT
* * * *
6708154 GCCTTCGGGATTTAG-CCGGATATAGCAACTCGTACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATA
*
6708218 GTCACTAGCACAAAA
66 GTCAATAGCACAAAA
*
6708233 GCCTTCGGAACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATA
**
6708298 GTCAATAGCACAACT
66 GTCAATAGCACAAAA
6708313 GCCTTCGGGACTTAGCCCGGATATAG
1 GCCTTCGGGACTTAGCCCGGATATAG
6708339 TCCGAATAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 13 0.14
80 83 0.86
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATA
GTCAATAGCACAAAA
Found at i:6718145 original size:17 final size:18
Alignment explanation
Indices: 6718123--6718161 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
6718113 AGGCCAATCT
6718123 GGGCGTGTGGG-CCACAC
1 GGGCGTGTGGGTCCACAC
*
6718140 GGGCGTGTGGGTCTACAC
1 GGGCGTGTGGGTCCACAC
6718158 GGGC
1 GGGC
6718162 AAGCCATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.10, C:0.26, G:0.49, T:0.15
Consensus pattern (18 bp):
GGGCGTGTGGGTCCACAC
Found at i:6734762 original size:67 final size:67
Alignment explanation
Indices: 6734681--6735514 Score: 1668
Period size: 67 Copynumber: 12.4 Consensus size: 67
6734671 CTAGCCAGTT
6734681 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6734746 TA
66 TA
6734748 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6734813 TA
66 TA
6734815 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6734880 TA
66 TA
6734882 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6734947 TA
66 TA
6734949 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735014 TA
66 TA
6735016 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735081 TA
66 TA
6735083 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735148 TA
66 TA
6735150 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735215 TA
66 TA
6735217 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735282 TA
66 TA
6735284 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735349 TA
66 TA
6735351 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735416 TA
66 TA
6735418 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
6735483 TA
66 TA
6735485 TATCTCGTAGCTCTCTTGTCTACATGGTGT
1 TATCTCGTAGCTCTCTTGTCTACATGGTGT
6735515 ACACATAGTA
Statistics
Matches: 767, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 767 1.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (67 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACA
TA
Found at i:6737251 original size:43 final size:43
Alignment explanation
Indices: 6737149--6737306 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 43
6737139 AGGTTACCTA
* * * *
6737149 AATGTGATTACATGTATGACCATGTCTGGGACATTGGCATTGT
1 AATGAGATTACATGTAAGACCATGTCTAGGACATTGGCATCGT
* * *
6737192 ATTGAGATTTCATGTAAGACCGTGTCTAGGACATTGGCATCGTT
1 AATGAGATTACATGTAAGACCATGTCTAGGACATTGGCATCG-T
* * * * ** * *
6737236 AAT-CGATTACGTGTAAGTCCTTCCCCAGGACAGTGGCATCG-
1 AATGAGATTACATGTAAGACCATGTCTAGGACATTGGCATCGT
* *
6737277 ATATGTA-ATAACATGTAAGACCATATCTAG
1 A-ATG-AGATTACATGTAAGACCATGTCTAG
6737307 AATATGACAT
Statistics
Matches: 86, Mismatches: 25, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 80 0.93
44 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
AATGAGATTACATGTAAGACCATGTCTAGGACATTGGCATCGT
Found at i:6752582 original size:512 final size:512
Alignment explanation
Indices: 6751618--6752648 Score: 2053
Period size: 512 Copynumber: 2.0 Consensus size: 512
6751608 ATACGAAGTC
6751618 CACATTTGCATAATATCACCAAAGCATTCATATCATATTTCTCATTCATGATCTTACCATATTAT
1 CACATTTGCATAATATCACCAAAGCATTCATATCATATTTCTCATTCATGATCTTACCATATTAT
6751683 TGTTATATTGAAGTCTCAACCCGAGGGTTAAGTACATACCTGTACAAAGTATCCCTTCCACAACA
66 TGTTATATTGAAGTCTCAACCCGAGGGTTAAGTACATACCTGTACAAAGTATCCCTTCCACAACA
6751748 CTTACCAACTAGTCACTTTCATCTCGAGAATTCTTCCATTTCACTAGAACTTTACCCGTTGAACA
131 CTTACCAACTAGTCACTTTCATCTCGAGAATTCTTCCATTTCACTAGAACTTTACCCGTTGAACA
6751813 CAATCGGAATATAATTCGGATACACGGATTTCATGCACGTAAGTGCCATACTCGTAGCTAGACAA
196 CAATCGGAATATAATTCGGATACACGGATTTCATGCACGTAAGTGCCATACTCGTAGCTAGACAA
6751878 ACTCAATAGCCTGCAGAAATTATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAACTCAGA
261 ACTCAATAGCCTGCAGAAATTATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAACTCAGA
6751943 CTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAGCTCAACAAGCTCGG
326 CTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAGCTCAACAAGCTCGG
6752008 ATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCAGAACTCAAATATCCTAGTG
391 ATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCAGAACTCAAATATCCTAGTG
*
6752073 ACATGTCACTTGTATCCTAATCTATTCCCAAGGTTCAAATGGGATTCTTTTCAATTA
456 ACATGTCACTTGTATCCTAATCTATTCCCAAGGTTCAAACGGGATTCTTTTCAATTA
6752130 CACATTTGCATAATATCACCAAAGCATTCATATCATATTTCTCATTCATGATCTTACCATATTAT
1 CACATTTGCATAATATCACCAAAGCATTCATATCATATTTCTCATTCATGATCTTACCATATTAT
6752195 TGTTATATTGAAGTCTCAACCCGAGGGTTAAGTACATACCTGTACAAAGTATCCCTTCCACAACA
66 TGTTATATTGAAGTCTCAACCCGAGGGTTAAGTACATACCTGTACAAAGTATCCCTTCCACAACA
6752260 CTTACCAACTAGTCACTTTCATCTCGAGAATTCTTCCATTTCACTAGAACTTTACCCGTTGAACA
131 CTTACCAACTAGTCACTTTCATCTCGAGAATTCTTCCATTTCACTAGAACTTTACCCGTTGAACA
6752325 CAATCGGAATATAATTCGGATACACGGATTTCATGCACGTAAGTGCCATACTCGTAGCTAGACAA
196 CAATCGGAATATAATTCGGATACACGGATTTCATGCACGTAAGTGCCATACTCGTAGCTAGACAA
6752390 ACTCAATAGCCTGCAGAAATTATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAACTCAGA
261 ACTCAATAGCCTGCAGAAATTATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAACTCAGA
6752455 CTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAGCTCAACAAGCTCGG
326 CTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAGCTCAACAAGCTCGG
6752520 ATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCAGAACTCAAATATCCTAGTG
391 ATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCAGAACTCAAATATCCTAGTG
6752585 ACATGTCACTTGTATCCTAATCTATTCCCAAGGTTCAAACGGGATTCTTTTCAATTA
456 ACATGTCACTTGTATCCTAATCTATTCCCAAGGTTCAAACGGGATTCTTTTCAATTA
6752642 CACATTT
1 CACATTT
6752649 TGATTGTCTT
Statistics
Matches: 518, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
512 518 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (512 bp):
CACATTTGCATAATATCACCAAAGCATTCATATCATATTTCTCATTCATGATCTTACCATATTAT
TGTTATATTGAAGTCTCAACCCGAGGGTTAAGTACATACCTGTACAAAGTATCCCTTCCACAACA
CTTACCAACTAGTCACTTTCATCTCGAGAATTCTTCCATTTCACTAGAACTTTACCCGTTGAACA
CAATCGGAATATAATTCGGATACACGGATTTCATGCACGTAAGTGCCATACTCGTAGCTAGACAA
ACTCAATAGCCTGCAGAAATTATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAACTCAGA
CTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAGCTCAACAAGCTCGG
ATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCAGAACTCAAATATCCTAGTG
ACATGTCACTTGTATCCTAATCTATTCCCAAGGTTCAAACGGGATTCTTTTCAATTA
Found at i:6759926 original size:46 final size:46
Alignment explanation
Indices: 6759739--6759916 Score: 257
Period size: 46 Copynumber: 3.9 Consensus size: 46
6759729 CACAATATAT
* * * * * *
6759739 ATATACATCTCATACATATCTCACGTTAGCCATTTGGCTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
* *
6759785 ATATCCATCTCATACACGTTTCGCATTAGCCATTTGGCTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
* * *
6759831 ATATCCATCTCATTCACGTTTCGCATTAGCCATTCGACTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
6759877 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTT
6759917 CGCCACATAT
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 120 1.00
ACGTcount: A:0.24, C:0.30, G:0.10, T:0.37
Consensus pattern (46 bp):
ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
Found at i:6759971 original size:47 final size:47
Alignment explanation
Indices: 6759940--6760838 Score: 1744
Period size: 47 Copynumber: 19.1 Consensus size: 47
6759930 CACTTCCACG
** * *
6759940 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6759987 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760034 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760081 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760128 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760175 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760222 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760269 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760316 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760363 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760410 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760457 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760504 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760551 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760598 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760645 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760692 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760739 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
* *
6760786 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
6760833 TTCATC
1 TTCATC
6760839 TCATAAAATC
Statistics
Matches: 846, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 846 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
Found at i:6764405 original size:40 final size:40
Alignment explanation
Indices: 6764340--6764470 Score: 190
Period size: 40 Copynumber: 3.3 Consensus size: 40
6764330 GATTACACAT
* * * *
6764340 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
6764380 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
6764420 CACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
6764460 CACCAGCACGA
1 CACCAGCACGA
6764471 GTACCAGCAA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:6766423 original size:33 final size:33
Alignment explanation
Indices: 6766386--6766450 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
6766376 CAATGAATAC
*
6766386 TTAGTTTTCATTCATGGTTCAATCATAATTGAT
1 TTAGTTTTCATTCATGGTTCAATAATAATTGAT
6766419 TTAGTTTTCATTCATGGTTCAATAATAATTGA
1 TTAGTTTTCATTCATGGTTCAATAATAATTGA
6766451 GTTAAATGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (33 bp):
TTAGTTTTCATTCATGGTTCAATAATAATTGAT
Found at i:6773926 original size:21 final size:21
Alignment explanation
Indices: 6773901--6773949 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
6773891 AATATGCATA
6773901 TGATTTCTGACGATCCAAAGC
1 TGATTTCTGACGATCCAAAGC
*
6773922 TGATTTCTGACGATCCGAAGC
1 TGATTTCTGACGATCCAAAGC
*
6773943 TGCTTTC
1 TGATTTC
6773950 AGACTATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (21 bp):
TGATTTCTGACGATCCAAAGC
Found at i:6782955 original size:41 final size:43
Alignment explanation
Indices: 6782896--6783000 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 43
6782886 GTCCATACTC
* * * * *
6782896 GTTGAGTGGTCTGGGTTCATGAGA-ATAT-GGCTTCCAAGCTT
1 GTTGAGAGGTCTGAGTTCATGAGAGATATAAGCATCCAAGCTA
* * *
6782937 GTTGAGAGGTCTGAGTTCATTATAGATGTAAGCATCCAAGCTA
1 GTTGAGAGGTCTGAGTTCATGAGAGATATAAGCATCCAAGCTA
*
6782980 GTTGAGAGGTTTGAGTTCATG
1 GTTGAGAGGTCTGAGTTCATG
6783001 GTGGATGCGA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 20 0.38
42 3 0.06
43 29 0.56
ACGTcount: A:0.24, C:0.12, G:0.30, T:0.33
Consensus pattern (43 bp):
GTTGAGAGGTCTGAGTTCATGAGAGATATAAGCATCCAAGCTA
Found at i:6783715 original size:20 final size:20
Alignment explanation
Indices: 6783690--6783734 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
6783680 CGGGTAAGGG
*
6783690 ACACGAGCGTGTCCCCAAGA
1 ACACGAGCATGTCCCCAAGA
*
6783710 ACACGAGCATGTCCCCAAGC
1 ACACGAGCATGTCCCCAAGA
6783730 ACACG
1 ACACG
6783735 GGCGCGTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.38, G:0.22, T:0.09
Consensus pattern (20 bp):
ACACGAGCATGTCCCCAAGA
Found at i:6790117 original size:43 final size:43
Alignment explanation
Indices: 6790063--6790148 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
6790053 GAGATATGTC
*
6790063 GCATCCAAGCTCATTGAGAGGTCCGAGTTCATTATGGATGCAA
1 GCATCCAAGCTCATTGAGAGGTCCGAGTTCATGATGGATGCAA
* * * * *
6790106 GCATCCGAGCTCGTTGAGAGGTTCGGGTTCATGGTGGATGCAA
1 GCATCCAAGCTCATTGAGAGGTCCGAGTTCATGATGGATGCAA
6790149 TTCATGTAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (43 bp):
GCATCCAAGCTCATTGAGAGGTCCGAGTTCATGATGGATGCAA
Found at i:6800800 original size:180 final size:179
Alignment explanation
Indices: 6800529--6801066 Score: 837
Period size: 180 Copynumber: 3.0 Consensus size: 179
6800519 GAGCTATAGA
*
6800529 ACTCCAAATTAAGATTTGTTAATTTTCTCAGAAACTAGACTCACATATATTTTTACTATAAAATT
1 ACTCCAAATTAAGATTTGTTAATTTTCTCAGAAACTAGACTCACATATATTTTTACCATAAAA-T
6800594 TTTAGAATTTTTGGTTTAACCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTC
65 TTTAGAATTTTTGGTTTAACCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTC
6800659 CAATAGTTCCGACATCTCTTCACTAAAAATTATTTATCTCATGGTACAAG
130 CAATAGTTCCGACATCTCTTCACTAAAAATTATTTATCTCATGGTACAAG
6800709 ACTCCAAATTAAGATTTGTTAATTTTCTCAGAAACTAGACTCACATATATTTTTACCATAAAATT
1 ACTCCAAATTAAGATTTGTTAATTTTCTCAGAAACTAGACTCACATATATTTTTACCATAAAATT
* *
6800774 TTAAGAATTTTTGGTTTAACCAATTAGTACAGGTTATTCATTAAAGTTACCCCTGTTTCACTGTC
66 TT-AGAATTTTTGGTTTAACCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTC
* *
6800839 CAATAGTTCCGACATCTCTTCACTAAAAACTATTTATCTCATGATACAAG
130 CAATAGTTCCGACATCTCTTCACTAAAAATTATTTATCTCATGGTACAAG
** * * * * * * *
6800889 ACTCCAAATTAAGAACTGCTAATTTTCCCAAAAACTATACTTATATATATTCTTACCATAAAAGT
1 ACTCCAAATTAAGATTTGTTAATTTTCTCAGAAACTAGACTCACATATATTTTTACCATAAAA-T
* *
6800954 TTTAGAATTTTTGGTTTATCCAATTAATACAGTTTATTCATTAAA-TATACCCCTATTTCACTGT
65 TTTAGAATTTTTGGTTTAACCAATTAGTACAGTTTATTCATTAAAGT-TACCCCTATTTCACTGT
* * * *
6801018 CTAACAGTTCTGATC-TTTCTTCACTAAAAATTATTTATCTCATGGTACA
129 CCAATAGTTCCGA-CATCTCTTCACTAAAAATTATTTATCTCATGGTACA
6801067 GATCTCGGAT
Statistics
Matches: 330, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
179 5 0.02
180 320 0.97
181 5 0.02
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (179 bp):
ACTCCAAATTAAGATTTGTTAATTTTCTCAGAAACTAGACTCACATATATTTTTACCATAAAATT
TTAGAATTTTTGGTTTAACCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTCC
AATAGTTCCGACATCTCTTCACTAAAAATTATTTATCTCATGGTACAAG
Found at i:6801698 original size:50 final size:50
Alignment explanation
Indices: 6801623--6802067 Score: 373
Period size: 50 Copynumber: 8.8 Consensus size: 50
6801613 ACCGAAGCTC
*
6801623 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCT-ACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG-TGACCTATCAA
* * * *
6801673 TCTGGTACACGTAGTAGCCTGCACTTAGTACTAGACATGTGACTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * ** *
6801723 TCTGGTACACGTAGTAGCCTGGACGTAGTACTACACACGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * *
6801775 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
6801824 TAC-GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CTGAACCA
1 T-CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-ATCAA
* * * * * * ** * *
6801874 TTTGATACACGTAGGAGCCTGCACTTAGTATTACACACGTGATCGAAACTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAA
* * * * * *
6801925 TC-GAGTACGCATAGTATCCTGCCCTTAGTACTATACATGCGACCTAACAA
1 TCTG-GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
6801975 TCTGGTACACGTAGTAGCCTGTACTTAGTACTACACATGTGACC-A-AAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
6802023 ACTGTCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
6802068 TTCTCACAAT
Statistics
Matches: 316, Mismatches: 64, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
48 5 0.02
49 6 0.02
50 200 0.63
51 71 0.22
52 34 0.11
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:6801903 original size:151 final size:151
Alignment explanation
Indices: 6801626--6802017 Score: 563
Period size: 151 Copynumber: 2.6 Consensus size: 151
6801616 GAAGCTCTCT
*
6801626 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCTACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
6801691 CTGCACTTAGTACTAGACATGTGACTTATCCATCTGGTACACGTAGTAGCCTGGACGTAGTACTA
66 CTGCACTTAGTACTACACATGTGACTGAACCATCTGATACACGTAGGAGCCTGCACGTAGTACTA
*
6801756 CACACGTGATC-AAAGTTAACG
131 CACACGTGATCGAAA-CTAACG
* *
6801777 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAATAC-GGTACACATAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT-CTGGTACACGTAGTAG
* * * *
6801841 CCTGCACTTAGTACTACACACGTGACTGAACCATTTGATACACGTAGGAGCCTGCACTTAGTATT
65 CCTGCACTTAGTACTACACATGTGACTGAACCATCTGATACACGTAGGAGCCTGCACGTAGTACT
*
6801906 ACACACGTGATCGAAACTATCG
130 ACACACGTGATCGAAACTAACG
* * * * *
6801928 AGTACGCATAGTATCCTGCCCTTAGTACTATACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
6801993 CTGTACTTAGTACTACACATGTGAC
66 CTGCACTTAGTACTACACATGTGAC
6802018 CAAAAACTGT
Statistics
Matches: 214, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
150 1 0.00
151 209 0.98
152 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACATGTGACTGAACCATCTGATACACGTAGGAGCCTGCACGTAGTACTA
CACACGTGATCGAAACTAACG
Found at i:6801938 original size:101 final size:103
Alignment explanation
Indices: 6801623--6802063 Score: 323
Period size: 101 Copynumber: 4.4 Consensus size: 103
6801613 ACCGAAGCTC
* * * * *
6801623 TCTG-GTACGCATAGTAGCCTGCACTTAGTACTACACATGCTACCTATCAATCTGGTACACGTAG
1 TCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAG
* * * ** * *
6801687 TAGCCTGCACTTAGTACTAGACATGTGA-C-TTATCCA
66 GAGCCTGCACTTAGTACTACACACGTGACCAAAAACTA
* * * * * * * * * * *
6801723 TCTG-GTACACGTAGTAGCCTGGACGTAGTACTACACACGTGATCAAAGTTAA-CGGGTACGCAT
1 TCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA--CAATCTGATACACGT
* * * * **
6801786 AGTAGCCTGCACTTAGTACTACACATGCGACTTATCAA-TA
64 AGGAGCCTGCACTTAGTACTACACACGTGAC-CAAAAACTA
* * *
6801826 -C-G-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CTGAACCATTTGATACACGTA
1 TCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT-AACAATCTGATACACGTA
* * *
6801887 GGAGCCTGCACTTAGTATTACACACGTGATC-GAAACTA
65 GGAGCCTGCACTTAGTACTACACACGTGACCAAAAACTA
* * * * * *
6801925 TC-GAGTACGCATAGTATCCTGCCCTTAGTACTATACATGCGACCTAACAATCTGGTACACGTAG
1 TCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAG
* * * *
6801989 TAGCCTGTACTTAGTACTACACATGTGACCAAAAACTG
66 GAGCCTGCACTTAGTACTACACACGTGACCAAAAACTA
* * *
6802027 TCTTA-AACACATAGTAGCCTGCACATAGTACTACACA
1 TCTGAGTACACATAGTAGCCTGCACTTAGTACTACACA
6802064 TGTGTTCTCA
Statistics
Matches: 266, Mismatches: 62, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
98 2 0.01
99 3 0.01
100 72 0.27
101 147 0.55
102 38 0.14
103 2 0.01
104 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (103 bp):
TCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAG
GAGCCTGCACTTAGTACTACACACGTGACCAAAAACTA
Found at i:6802581 original size:43 final size:43
Alignment explanation
Indices: 6802519--6802649 Score: 226
Period size: 43 Copynumber: 3.0 Consensus size: 43
6802509 AAACCATTTT
* * *
6802519 CATAAATATAACAGTCCACAATTTGTATTAAATCACACACTTA
1 CATAACTATAGCAGTCCACAATTTGCATTAAATCACACACTTA
*
6802562 CATAACTATAGCAATCCACAATTTGCATTAAATCACACACTTA
1 CATAACTATAGCAGTCCACAATTTGCATTAAATCACACACTTA
6802605 CATAACTATAGCAGTCCACAATTTGCATTAAATCACACACTTA
1 CATAACTATAGCAGTCCACAATTTGCATTAAATCACACACTTA
6802648 CA
1 CA
6802650 CACATTTTAC
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 83 1.00
ACGTcount: A:0.42, C:0.24, G:0.05, T:0.28
Consensus pattern (43 bp):
CATAACTATAGCAGTCCACAATTTGCATTAAATCACACACTTA
Found at i:6804446 original size:17 final size:17
Alignment explanation
Indices: 6804426--6804458 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6804416 TTTAACTATC
6804426 AAATTAAATTAATTCAA
1 AAATTAAATTAATTCAA
*
6804443 AAATTAATTTAATTCA
1 AAATTAAATTAATTCA
6804459 TACAATACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTAAATTAATTCAA
Found at i:6806504 original size:21 final size:20
Alignment explanation
Indices: 6806462--6806515 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
6806452 AAATGTAGTA
* *
6806462 AATATGATTATG-GTAAGAT
1 AATATGATGATGTATAAGAT
6806481 AATATGATGATGTATAATGAT
1 AATATGATGATGTATAA-GAT
6806502 AATATGATGATGTA
1 AATATGATGATGTA
6806516 AGATGTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.35
20 3 0.10
21 17 0.55
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (20 bp):
AATATGATGATGTATAAGAT
Found at i:6808333 original size:24 final size:24
Alignment explanation
Indices: 6808287--6808351 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
6808277 ATGGGAGGTT
* * * * *
6808287 GGAGTGATTTATAGAGTATATCAT
1 GGAGAGATTTATGGAGAAAATCAA
6808311 GGAGAGATATTA-GGAGAAAATCAA
1 GGAGAGAT-TTATGGAGAAAATCAA
*
6808335 GGAGTGATTTATGGAGA
1 GGAGAGATTTATGGAGA
6808352 GATTTAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 3 0.09
24 27 0.82
25 3 0.09
ACGTcount: A:0.38, C:0.03, G:0.31, T:0.28
Consensus pattern (24 bp):
GGAGAGATTTATGGAGAAAATCAA
Found at i:6810182 original size:27 final size:25
Alignment explanation
Indices: 6810105--6810193 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 25
6810095 CTTTCTGCAA
*
6810105 ATCATATTTACCAGTGGCTATGTGCT
1 ATCATATTTACCA-TGGCTATGTGCG
* * *
6810131 AGTCATATTTATCGATGACTTTGTGTCG
1 A-TCATATTTA-CCATGGCTATGTG-CG
6810159 ATCATATTTACCCATGGCTATGTGCTG
1 ATCATATTTA-CCATGGCTATGTGC-G
*
6810186 ATTATATT
1 ATCATATT
6810194 ACCGTCGCTA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
26 2 0.04
27 44 0.88
28 4 0.08
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.42
Consensus pattern (25 bp):
ATCATATTTACCATGGCTATGTGCG
Found at i:6815533 original size:18 final size:18
Alignment explanation
Indices: 6815510--6815552 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
6815500 GAATATGAGA
6815510 TTCTTTTGCCTTAACTGT
1 TTCTTTTGCCTTAACTGT
6815528 TTCTTTTGCCTTAACTGT
1 TTCTTTTGCCTTAACTGT
6815546 TTCTTTT
1 TTCTTTT
6815553 ATGAGAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.09, C:0.21, G:0.09, T:0.60
Consensus pattern (18 bp):
TTCTTTTGCCTTAACTGT
Found at i:6815653 original size:16 final size:16
Alignment explanation
Indices: 6815634--6815665 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6815624 AATTGTTTTA
6815634 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
6815650 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
6815666 ATTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:6815951 original size:50 final size:50
Alignment explanation
Indices: 6815876--6816253 Score: 347
Period size: 50 Copynumber: 7.5 Consensus size: 50
6815866 CTGGTATGTA
*
6815876 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * ** * *
6815926 TAGTAGCCTACACTTAGTACTACACATGTC-ACTTAACCATCTGAAATACA
1 TAGTAGCCTGCACTTAGTACTACACATG-CGACCTATCAATCTGGTACACG
* ** * * *
6815976 TAGTATCCTGCACTTAGTACTACACACATGATCGAAGT-T-AA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACT--ACACATG--CGACCTATCAATCTGGTACACG
*
6816027 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * *
6816077 TATTAGCCTGCACTTAGTACTAAGCACAT--GACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACT-A-CACATGCGACCTATCAATCTGGTACACG
* * * ** * * ** *
6816127 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAATCTGGTACACG
6816178 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
6816228 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
6816254 CGTGACTCAC
Statistics
Matches: 258, Mismatches: 55, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
47 4 0.02
48 5 0.02
49 12 0.05
50 157 0.61
51 62 0.24
52 14 0.05
53 2 0.01
54 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
Found at i:6816069 original size:101 final size:101
Alignment explanation
Indices: 6815926--6816107 Score: 233
Period size: 101 Copynumber: 1.8 Consensus size: 101
6815916 CTAGTACACG
* * * * *
6815926 TAGTAGCCTACACTTAGTACTACACATGTCACTTAACCATCTGAAATACATAGTATCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACATGACACCTAACAATCTGAAACACATAGTAGCCTGCACTT
6815991 AGTACTACA-CACATGATCGAAGTTAACGGGTACGCA
66 AGTACTA-AGCACATGATCGAAGTTAACGGGTACGCA
* * ** * *
6816027 TAGTAGCCTGCACTTAGTACTACACAT-ACGACCTATCAATCTGGTACACGTATTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACATGAC-ACCTAACAATCTGAAACACATAGTAGCCTGCACT
6816091 TAGTACTAAGCACATGA
65 TAGTACTAAGCACATGA
6816108 CTTAACCATC
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
100 2 0.03
101 66 0.97
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACATGACACCTAACAATCTGAAACACATAGTAGCCTGCACTT
AGTACTAAGCACATGATCGAAGTTAACGGGTACGCA
Found at i:6816260 original size:151 final size:151
Alignment explanation
Indices: 6815868--6816260 Score: 635
Period size: 151 Copynumber: 2.6 Consensus size: 151
6815858 AAAGCTCTCT
* *
6815868 GGTATGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
6815933 CTACACTTAGTACTACACATGTCACTTAACCATCTGAAATACATAGTATCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGAAACACATAGTAGCCTACACTTAGTACTA
6815998 CACACATGATCGAAGTTAACG
131 CACACATGATCGAAGTTAACG
* * *
6816019 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTATTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
6816084 CTGCACTTAGTACTA-AGCACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACT
66 CTGCACTTAGTACTACA-CACGTGACTTAACCATCTGAAACACATAGTAGCCTACACTTAGTACT
*
6816148 ACACACGTGATCGAAGTTAACG
130 ACACACATGATCGAAGTTAACG
6816170 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
6816235 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
6816261 CACAACGAAT
Statistics
Matches: 221, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
150 1 0.00
151 219 0.99
152 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGAAACACATAGTAGCCTACACTTAGTACTA
CACACATGATCGAAGTTAACG
Found at i:6821537 original size:72 final size:72
Alignment explanation
Indices: 6821397--6821542 Score: 181
Period size: 73 Copynumber: 2.0 Consensus size: 72
6821387 CCACATATTT
*
6821397 TGTAATGCCCGCATTTGAACTACTCACGAGTCTGTACACAAAGTCAGCATCCAGACCCCCAAAGC
1 TGTAATGCCCGCATTTGAACTACTCACGAGTCTATACACAAAGTCAGCATCCAGACCCCCAAAGC
*
6821462 ATTATCA
66 ATTAACA
* * * * *
6821469 TGTAATGCCCGC-TCATTGAGCTACTCACGGGTTTATACACAAAGTTAGCA-CCTGGA-CCCCAA
1 TGTAATGCCCGCAT--TTGAACTACTCACGAGTCTATACACAAAGTCAGCATCC-AGACCCCCAA
6821531 AGCATTAACA
63 AGCATTAACA
6821541 TG
1 TG
6821543 ATATGCTTGC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
71 1 0.02
72 31 0.48
73 32 0.50
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (72 bp):
TGTAATGCCCGCATTTGAACTACTCACGAGTCTATACACAAAGTCAGCATCCAGACCCCCAAAGC
ATTAACA
Found at i:6821568 original size:72 final size:73
Alignment explanation
Indices: 6821416--6821597 Score: 174
Period size: 72 Copynumber: 2.5 Consensus size: 73
6821406 CGCATTTGAA
* * *
6821416 CTACTCACGAGTCTGTACACAAAGTCAGCATCCAGACCCCCAAAGCATTATCATGTAATGCCCGC
1 CTACTCACGGGTCTATACACAAAGTCAGCATCCAGACCCCCAAAGCATTAACATGTAATGCCCGC
**
6821481 TCATTGAG
66 TCAGCGAG
* * * **
6821489 CTACTCACGGGTTTATACACAAAGTTAGCA-CCTGGA-CCCCAAAGCATTAACATG-ATATGCTT
1 CTACTCACGGGTCTATACACAAAGTCAGCATCC-AGACCCCCAAAGCATTAACATGTA-ATGCCC
6821551 GCTCAGCGAG
64 GCTCAGCGAG
* * * * *
6821561 TTACTCACGGGCCTGAT-CACATAGTCAACACCCAGAC
1 CTACTCACGGGTCT-ATACACAAAGTCAGCATCCAGAC
6821598 TCACATTACA
Statistics
Matches: 87, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
71 1 0.01
72 54 0.62
73 32 0.37
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (73 bp):
CTACTCACGGGTCTATACACAAAGTCAGCATCCAGACCCCCAAAGCATTAACATGTAATGCCCGC
TCAGCGAG
Found at i:6822298 original size:20 final size:20
Alignment explanation
Indices: 6822273--6822311 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
6822263 AAAATTTCAA
6822273 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
6822293 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
6822312 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:6824919 original size:42 final size:42
Alignment explanation
Indices: 6824842--6824932 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
6824832 AAAACATGTG
*
6824842 TCACATATATCAGAACTCAGAGCACAACTCAATGAGTTCAGA
1 TCACATATATCAGAACTCAGACCACAACTCAATGAGTTCAGA
6824884 TCACATATATCATGAACTCAGACCACAACTC-ATGAGTTCAGA
1 TCACATATATCA-GAACTCAGACCACAACTCAATGAGTTCAGA
*
6824926 TCGCATA
1 TCACATA
6824933 ATTCCTAGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 29 0.63
43 17 0.37
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.23
Consensus pattern (42 bp):
TCACATATATCAGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:6832434 original size:22 final size:21
Alignment explanation
Indices: 6832377--6832441 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
6832367 TGTGTCACAT
*
6832377 ATATCATGAACTCAGATCACA
1 ATATCATGAACTCAGATCATA
* **
6832398 A-CTCAATGAGTTCAGATCATA
1 ATATC-ATGAACTCAGATCATA
*
6832419 GATATCATGAACTCAGACCATA
1 -ATATCATGAACTCAGATCATA
6832441 A
1 A
6832442 CTCATGAGTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 2 0.06
21 15 0.45
22 14 0.42
23 2 0.06
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.25
Consensus pattern (21 bp):
ATATCATGAACTCAGATCATA
Found at i:6832444 original size:43 final size:42
Alignment explanation
Indices: 6832377--6832457 Score: 135
Period size: 43 Copynumber: 1.9 Consensus size: 42
6832367 TGTGTCACAT
*
6832377 ATATCATGAACTCAGATCACAACTCAATGAGTTCAGATCATAG
1 ATATCATGAACTCAGACCACAACTC-ATGAGTTCAGATCATAG
*
6832420 ATATCATGAACTCAGACCATAACTCATGAGTTCAGATC
1 ATATCATGAACTCAGACCACAACTCATGAGTTCAGATC
6832458 GCATAATTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
42 13 0.36
43 23 0.64
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (42 bp):
ATATCATGAACTCAGACCACAACTCATGAGTTCAGATCATAG
Found at i:6832454 original size:20 final size:20
Alignment explanation
Indices: 6832397--6832455 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 20
6832387 CTCAGATCAC
*
6832397 AACTCAATGAGTTCAGATCAT
1 AACTC-ATGAGTTCAGACCAT
* **
6832418 AGATATCATGAACTCAGACCAT
1 A-A-CTCATGAGTTCAGACCAT
6832440 AACTCATGAGTTCAGA
1 AACTCATGAGTTCAGA
6832456 TCGCATAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
20 11 0.38
21 2 0.07
22 14 0.48
23 2 0.07
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.25
Consensus pattern (20 bp):
AACTCATGAGTTCAGACCAT
Found at i:6840170 original size:21 final size:20
Alignment explanation
Indices: 6840140--6840200 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
6840130 ATATATTATT
*
6840140 TATAACCATAATATATAATAA
1 TATAAACAT-ATATATAATAA
*
6840161 TATAAACATATGATA-AGTAA
1 TATAAACATAT-ATATAATAA
*
6840181 TATAAAAATATATATAATAA
1 TATAAACATATATATAATAA
6840201 AATGTATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
19 3 0.09
20 20 0.59
21 11 0.32
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
TATAAACATATATATAATAA
Found at i:6840183 original size:20 final size:18
Alignment explanation
Indices: 6840149--6840212 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 18
6840139 TTATAACCAT
6840149 AATATATAATAATATAAA
1 AATATATAATAATATAAA
*
6840167 CATATGATAAGTAATATAAA
1 AATAT-ATAA-TAATATAAA
6840187 AATATAT-ATAATA-AAA
1 AATATATAATAATATAAA
**
6840203 TGTATATAAT
1 AATATATAAT
6840213 GTATAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 8 0.21
17 7 0.18
18 5 0.13
19 6 0.15
20 13 0.33
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (18 bp):
AATATATAATAATATAAA
Found at i:6840464 original size:21 final size:18
Alignment explanation
Indices: 6840426--6840472 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 18
6840416 AATGAAATTT
6840426 CAAAAATATATAATAATA
1 CAAAAATATATAATAATA
*
6840444 TAAATAATATAATAGATAATA
1 CAAA-AATAT-ATA-ATAATA
6840465 CAAAAATA
1 CAAAAATA
6840473 ATATGTACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.12
19 5 0.21
20 7 0.29
21 9 0.38
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (18 bp):
CAAAAATATATAATAATA
Found at i:6845292 original size:87 final size:87
Alignment explanation
Indices: 6845120--6846413 Score: 2152
Period size: 87 Copynumber: 14.9 Consensus size: 87
6845110 TCCCTACATA
* * * *
6845120 TACAGAGACGCCAAATTTGCTTCTTCGATTTGCTTCAACGTAAACACATGAAAGCCCAAATCAGC
1 TACAGAGACGCCAAA--T-CATCTTAGATTTGCTTCAACGTAAACACGTGAAAG-CCAAATTAGC
** * * *
6845185 TATGTCTTCAATCTGTTCTCTAACAG
62 TATGTCTTTGATCTGCTCTCTGATAG
* * *
6845211 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAACTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
* *
6845276 TCTTCGATCTGCTCTCTGACAG
66 TCTTTGATCTGCTCTCTGATAG
*
6845298 TACAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845363 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
6845385 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845450 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
6845472 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845537 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
6845559 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845624 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
6845646 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845711 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
6845733 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845798 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
6845820 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845885 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
6845907 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
6845972 TCTTTGATCTGCTCTCTGATAG
66 TCTTTGATCTGCTCTCTGATAG
* *
6845994 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
* *
6846059 TCTTCGATCTGCTCTCTGACAG
66 TCTTTGATCTGCTCTCTGATAG
* *
6846081 TACAGAGACGCC-AA--ATC----ATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
* *
6846139 TCTTTGATCTACTCTCTGACAG
66 TCTTTGATCTGCTCTCTGATAG
* *
6846161 TACAGAGGCGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
* * * *
6846226 TCTTCGATCTGCTCCCTAACAG
66 TCTTTGATCTGCTCTCTGATAG
* *
6846248 TACAGAGACGCCAAATCATCTTAGATTTGCTTCGACGTAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
* * * *
6846313 TCTTCGATCTGCTCCCTAACAG
66 TCTTTGATCTGCTCTCTGATAG
* *
6846335 TACAGAGACGCCAAATCATCTTAGATTTGCTTCGACGTAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
* *
6846400 TCTTCGATTTGCTC
66 TCTTTGATCTGCTC
6846414 CTTGTAAACA
Statistics
Matches: 1166, Mismatches: 30, Indels: 18
0.96 0.02 0.01
Matches are distributed among these distances:
80 72 0.06
81 2 0.00
83 3 0.00
84 3 0.00
86 2 0.00
87 1037 0.89
88 31 0.03
89 1 0.00
91 15 0.01
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (87 bp):
TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATTAGCTATG
TCTTTGATCTGCTCTCTGATAG
Found at i:6846725 original size:176 final size:170
Alignment explanation
Indices: 6846380--6846751 Score: 494
Period size: 170 Copynumber: 2.2 Consensus size: 170
6846370 CGTAAACACG
* * * *
6846380 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTATAAACACAAGAATGCCAAATCATCTTG
* * *
6846445 GATCTGCTTCAGTGAACATCTCAAGGTTAGATATATGTATCTGCTCTCCGTCGAAATAGAGATGC
66 GATCTACTTCAGTAAACATCTCAAGGTTAGATATATGTATCTGCTCTCCATCGAAATAGAGATGC
6846510 CAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
131 CAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* ** * *
6846550 TGAAAGTCAAATCTGCTATGTTTTTTATTTGTTCCTTATAAACACAAGAATGTCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTATAAACACAAGAATGCCAAATCATCTTG
* * * * *
6846615 GATCTACTTCAGTAAAATCATCTGAAGGTTAGATCTGGTATGTGTCTGCTCTCTATCGAATATGG
66 GATCTACTTCAGT-AAA-CATCTCAAGGTTAGA--T-ATATGTATCTGCTCTCCATCGAA-ATAG
6846680 AGACT-CCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
125 AGA-TGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* **
6846726 TGAAAGTCAGATCTATTATGTCTTCG
1 TGAAAGTCAAATCTGCTATGTCTTCG
6846752 GTCTGTTACT
Statistics
Matches: 172, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
170 68 0.40
171 2 0.01
172 14 0.08
174 1 0.01
175 19 0.11
176 67 0.39
177 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (170 bp):
TGAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTATAAACACAAGAATGCCAAATCATCTTG
GATCTACTTCAGTAAACATCTCAAGGTTAGATATATGTATCTGCTCTCCATCGAAATAGAGATGC
CAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
Found at i:6847671 original size:7 final size:7
Alignment explanation
Indices: 6847659--6847720 Score: 76
Period size: 7 Copynumber: 9.1 Consensus size: 7
6847649 TTGGCCTCTC
6847659 CTTTTTT
1 CTTTTTT
6847666 CTTTTTT
1 CTTTTTT
6847673 CTTTTTT
1 CTTTTTT
*
6847680 CTCTTTT
1 CTTTTTT
6847687 C-TTTTT
1 CTTTTTT
6847693 CTTTTTT
1 CTTTTTT
6847700 -TCTTTTT
1 CT-TTTTT
*
6847707 CTTTTCT
1 CTTTTTT
6847714 -TTTTTT
1 CTTTTTT
6847720 C
1 C
6847721 CCTTTTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
6 11 0.23
7 35 0.74
8 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
CTTTTTT
Found at i:6847686 original size:21 final size:20
Alignment explanation
Indices: 6847662--6847732 Score: 90
Period size: 20 Copynumber: 3.5 Consensus size: 20
6847652 GCCTCTCCTT
6847662 TTTTCTTTTTTCTTTTTTCTC
1 TTTT-TTTTTTCTTTTTTCTC
*
6847683 TTTTCTTTTTCTTTTTT-TC
1 TTTTTTTTTTCTTTTTTCTC
* *
6847702 TTTTTCTTTTCTTTTTTTCCC
1 TTTTTTTTTTC-TTTTTTCTC
6847723 TTTTTTTTTT
1 TTTTTTTTTT
6847733 GAAATAGAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
19 11 0.26
20 18 0.42
21 14 0.33
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTTTTTTTCTTTTTTCTC
Found at i:6847718 original size:27 final size:28
Alignment explanation
Indices: 6847660--6847729 Score: 83
Period size: 27 Copynumber: 2.5 Consensus size: 28
6847650 TGGCCTCTCC
6847660 TTTTTTC-TTTTTTCTTTTTTCTCTTTT
1 TTTTTTCTTTTTTTCTTTTTTCTCTTTT
*
6847687 CTTTTTCTTTTTTTC-TTTTTCT-TTTCT
1 TTTTTTCTTTTTTTCTTTTTTCTCTTT-T
6847714 TTTTTTCCCTTTTTTT
1 TTTTTT--CTTTTTTT
6847730 TTTGAAATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 3 0.08
27 19 0.51
28 7 0.19
29 8 0.22
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (28 bp):
TTTTTTCTTTTTTTCTTTTTTCTCTTTT
Found at i:6847730 original size:14 final size:13
Alignment explanation
Indices: 6847660--6847732 Score: 83
Period size: 14 Copynumber: 5.3 Consensus size: 13
6847650 TGGCCTCTCC
6847660 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
*
6847673 CTTTTTTCTCTTTT
1 -TTTTTTCTTTTTT
*
6847687 CTTTTTCTTTTTT
1 TTTTTTCTTTTTT
6847700 TCTTTTTCTTTTCTT
1 T-TTTTTCTTTT-TT
*
6847715 TTTTTCCCTTTTTT
1 TTTTT-TCTTTTTT
6847729 TTTT
1 TTTT
6847733 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
13 11 0.22
14 32 0.63
15 8 0.16
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:6854331 original size:20 final size:18
Alignment explanation
Indices: 6854297--6854360 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 18
6854287 TTATAACCAT
6854297 AATATATAATAATATAAA
1 AATATATAATAATATAAA
*
6854315 TATATGATAAGTAATATAAA
1 AATAT-ATAA-TAATATAAA
6854335 AATATAT-ATAATA-AAA
1 AATATATAATAATATAAA
**
6854351 TGTATATAAT
1 AATATATAAT
6854361 GTATAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 8 0.21
17 7 0.18
18 5 0.13
19 6 0.15
20 13 0.33
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (18 bp):
AATATATAATAATATAAA
Found at i:6863753 original size:26 final size:26
Alignment explanation
Indices: 6863714--6863769 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6863704 TCTTATCTCT
*
6863714 ATTTTACCCTTAGTAAAATTTTGACG
1 ATTTTACCCATAGTAAAATTTTGACG
*
6863740 ATTTTATCCATAGTAAAATTTTGACG
1 ATTTTACCCATAGTAAAATTTTGACG
6863766 ATTT
1 ATTT
6863770 GGCCCTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (26 bp):
ATTTTACCCATAGTAAAATTTTGACG
Found at i:6863950 original size:6 final size:6
Alignment explanation
Indices: 6863939--6863969 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
6863929 AATTTCCATC
6863939 TTCATT TTCATT TTCATT TTCATT TTCATT T
1 TTCATT TTCATT TTCATT TTCATT TTCATT T
6863970 CCAAATGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCATT
Found at i:6871953 original size:15 final size:15
Alignment explanation
Indices: 6871933--6871964 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
6871923 TGAAGGCTAA
6871933 AGTAAAAGGTTCTTT
1 AGTAAAAGGTTCTTT
6871948 AGTAAAAGGTTCTTT
1 AGTAAAAGGTTCTTT
6871963 AG
1 AG
6871965 CACTAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (15 bp):
AGTAAAAGGTTCTTT
Found at i:6876624 original size:3 final size:3
Alignment explanation
Indices: 6876606--6876656 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
6876596 AGTTAGCATC
* * * * *
6876606 AAG AAA AAG AAG -AG AAG AAG AAG AAA AAG AAG AAG GAG GAG AAG GAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
6876653 AAG A
1 AAG A
6876657 GAAACAATGG
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6876796 original size:50 final size:50
Alignment explanation
Indices: 6876732--6876826 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
6876722 TAGACTCCAA
* *
6876732 TTTCTCCTTTCATAAATCTTTGGGTTTTCATGGAGGAAATCAATTTCAAT
1 TTTCCCCTTTCATAAATATTTGGGTTTTCATGGAGGAAATCAATTTCAAT
*
6876782 TTTCCCCTTTCATAAATATTTGGGTTTTTATGGAGGAAATCAATT
1 TTTCCCCTTTCATAAATATTTGGGTTTTCATGGAGGAAATCAATT
6876827 GGGATACCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (50 bp):
TTTCCCCTTTCATAAATATTTGGGTTTTCATGGAGGAAATCAATTTCAAT
Found at i:6877867 original size:30 final size:31
Alignment explanation
Indices: 6877804--6877869 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
6877794 TATTAATCAA
* *
6877804 TGACTGTTCTGTCACTTTTTTATAACGTTAG
1 TGACTATTCTGTCAATTTTTTATAACGTTAG
*
6877835 TGACTATTTTGTCAATTTTTTA-AA-GTTAAG
1 TGACTATTCTGTCAATTTTTTATAACGTT-AG
6877865 TGACT
1 TGACT
6877870 GAAATGAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 3 0.10
30 9 0.29
31 19 0.61
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.48
Consensus pattern (31 bp):
TGACTATTCTGTCAATTTTTTATAACGTTAG
Found at i:6884433 original size:46 final size:49
Alignment explanation
Indices: 6884327--6884448 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 49
6884317 TGTCTTCGAC
* * * *
6884327 ATGGACTTACATGAATTATTCCTGTCTCCAATGTCATATATATAACTAAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGTCACATATAT-ACTAAT
* * *
6884377 ATGGGCTTACATGTCTCATTCCTGTCTCCAAAG-C-CATATAT-CTTAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGTCACATATATACTAAT
* *
6884423 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGACTCATTCCTGTC
6884449 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 27 0.44
48 6 0.10
49 1 0.02
50 28 0.45
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (49 bp):
ATGGACTTACATGACTCATTCCTGTCTCCAAAGTCACATATATACTAAT
Found at i:6886082 original size:13 final size:13
Alignment explanation
Indices: 6886064--6886110 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
6886054 TAAAACACGA
*
6886064 AAAAAATATTAGT
1 AAAAAATATTAAT
**
6886077 AAAAAATATTTCT
1 AAAAAATATTAAT
*
6886090 TAAAAATATTAAT
1 AAAAAATATTAAT
6886103 AAAAAATA
1 AAAAAATA
6886111 GAATTTAGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (13 bp):
AAAAAATATTAAT
Found at i:6886214 original size:31 final size:31
Alignment explanation
Indices: 6886148--6886218 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
6886138 AAAAATTTAA
** **
6886148 GAGAGAATTTGAGAGATTTTCGAGAGTTGATT
1 GAGA-AATTTGAGAGATTTAAGAGAGTAAATT
6886180 GAGAAATTTGAGAGATTTAAGAGAG-AAATGT
1 GAGAAATTTGAGAGATTTAAGAGAGTAAAT-T
6886211 GAGAAATT
1 GAGAAATT
6886219 AGCAAGTGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 2 0.06
31 28 0.82
32 4 0.12
ACGTcount: A:0.39, C:0.01, G:0.30, T:0.30
Consensus pattern (31 bp):
GAGAAATTTGAGAGATTTAAGAGAGTAAATT
Found at i:6887067 original size:10 final size:10
Alignment explanation
Indices: 6887052--6887085 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
6887042 TTTAGAAGTT
6887052 TTAAAATCAA
1 TTAAAATCAA
*
6887062 TTAAAATCAT
1 TTAAAATCAA
6887072 TTAAAA-CAA
1 TTAAAATCAA
6887081 TTAAA
1 TTAAA
6887086 GAGTGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 7 0.32
10 15 0.68
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (10 bp):
TTAAAATCAA
Found at i:6892279 original size:26 final size:24
Alignment explanation
Indices: 6892237--6892284 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 24
6892227 ACATATTGGG
*
6892237 AGATAAATTTTTATTATTTTTTTA
1 AGATAAATTTTTATTATCTTTTTA
6892261 AGATAAATATTTTATTTATCTTTT
1 AGATAAAT-TTTTA-TTATCTTTT
6892285 CTATTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 5 0.24
26 8 0.38
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (24 bp):
AGATAAATTTTTATTATCTTTTTA
Found at i:6892284 original size:25 final size:24
Alignment explanation
Indices: 6892237--6892284 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
6892227 ACATATTGGG
*
6892237 AGATAAATTTTTATTATTTTTTTA
1 AGATAAATTTTTATTATTCTTTTA
6892261 AGATAAATATTTTATT-TATCTTTT
1 AGATAAAT-TTTTATTAT-TCTTTT
6892285 CTATTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (24 bp):
AGATAAATTTTTATTATTCTTTTA
Found at i:6896064 original size:24 final size:24
Alignment explanation
Indices: 6896020--6896066 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
6896010 GTTAAATGTC
*
6896020 TTATTGAATTTTATAGTTAAGTTT
1 TTATTGAATTTTATAGCTAAGTTT
*
6896044 TTATTTAATTTTAATA-CTAAGTT
1 TTATTGAATTTT-ATAGCTAAGTT
6896067 AATATTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (24 bp):
TTATTGAATTTTATAGCTAAGTTT
Found at i:6899389 original size:42 final size:42
Alignment explanation
Indices: 6899338--6899458 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
6899328 TTTGAGATTA
*
6899338 CGTGTAAGACCATATCTGGGATATGGAATCGATATGAGA-CTT
1 CGTGTAAGACCATATCTGGGATATGGAATCGATATGAGATC-C
* * * * *
6899380 TGTGTAAGACCATAGCTAGGCTATTGACATCGATATGAGATCC
1 CGTGTAAGACCATATCTGGGATATGGA-ATCGATATGAGATCC
* * *
6899423 CATGTAAGACCATATCTGGGATATGGCATTGATATG
1 CGTGTAAGACCATATCTGGGATATGGAATCGATATG
6899459 GTACTATGAG
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 30 0.48
43 32 0.51
44 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGAATCGATATGAGATCC
Found at i:6899690 original size:35 final size:35
Alignment explanation
Indices: 6899643--6899718 Score: 143
Period size: 35 Copynumber: 2.1 Consensus size: 35
6899633 TATGATTGTG
6899643 CAAGTTATGATATTAAGGTTTTAATAATATTCATGC
1 CAAG-TATGATATTAAGGTTTTAATAATATTCATGC
6899679 CAAGTATGATATTAAGGTTTTAATAATATTCATGC
1 CAAGTATGATATTAAGGTTTTAATAATATTCATGC
6899714 CAAGT
1 CAAGT
6899719 TGGACTATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 36 0.90
36 4 0.10
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.39
Consensus pattern (35 bp):
CAAGTATGATATTAAGGTTTTAATAATATTCATGC
Found at i:6911051 original size:39 final size:40
Alignment explanation
Indices: 6910847--6911069 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 40
6910837 TTGAATGCTG
* * * * * *
6910847 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * * *
6910887 TCCGGACTAAGAT-CCGAAGGCCTTTGTGTGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
6910927 TCCGGGTTAAGTTCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
6910967 TCCGGGTTAAGTTCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
6911007 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
6911046 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
6911070 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 116 0.73
41 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:6911089 original size:79 final size:80
Alignment explanation
Indices: 6910922--6911104 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
6910912 GTGTGAGATA
* * * * *
6910922 CTAAATCCGGGTTAAGTTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTTCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
6910987 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
6911002 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
6911066 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
6911081 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
6911105 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.53
80 26 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:6917892 original size:44 final size:42
Alignment explanation
Indices: 6917821--6917943 Score: 133
Period size: 44 Copynumber: 2.9 Consensus size: 42
6917811 GGATTCCAAT
* * *
6917821 ATGTGCTT-CGTGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGACG-TGGCATCGAC
*
6917863 TTGTGATTTACGTGTAAGACC-CTGTCTGGGACAGTGGCATCGAC
1 ATGTGA-TTACGTGTAAGACCAC-GTCTGGGAC-GTGGCATCGAC
* *
6917907 ATGTGATTACATGTAAGACCACGTCTAGGACGCTGGC
1 ATGTGATTACGTGTAAGACCACGTCTGGGACG-TGGC
6917944 GTTGTGCGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
42 5 0.07
43 28 0.41
44 34 0.50
45 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (42 bp):
ATGTGATTACGTGTAAGACCACGTCTGGGACGTGGCATCGAC
Found at i:6920741 original size:12 final size:12
Alignment explanation
Indices: 6920724--6920751 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
6920714 TAATTAAATG
6920724 AATTAAAAGCCA
1 AATTAAAAGCCA
6920736 AATTAAAAGCCA
1 AATTAAAAGCCA
6920748 AATT
1 AATT
6920752 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.21
Consensus pattern (12 bp):
AATTAAAAGCCA
Found at i:6921664 original size:42 final size:42
Alignment explanation
Indices: 6921574--6921669 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
6921564 TGAAATTACG
* *
6921574 TGTAAGACCATATCTAGGATATAGCATCAGTATAAGACTTCG
1 TGTAAGACCATATCTAGGATATAGCACCAGTATAAGACTTCA
* * * *
6921616 TATAAGACCATATCTGAGGA-ATGGCACC-GATATGAGATTTCA
1 TGTAAGACCATATCT-AGGATATAGCACCAG-TATAAGACTTCA
6921658 TGTAAGACCATA
1 TGTAAGACCATA
6921670 GCTGGGCTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 40 0.89
43 4 0.09
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATAGCACCAGTATAAGACTTCA
Found at i:6923340 original size:30 final size:30
Alignment explanation
Indices: 6923275--6923350 Score: 127
Period size: 30 Copynumber: 2.5 Consensus size: 30
6923265 CAAGGGCGTA
*
6923275 TGTCTCAGCCGTGTGAAGTACACAGGCATG
1 TGTCTTAGCCGTGTGAAGTACACAGGCATG
6923305 TGTCTTAGCCGTGTGAAGTACACAGGCATG
1 TGTCTTAGCCGTGTGAAGTACACAGGCATG
6923335 TGTCTT-GCCCGTGTGA
1 TGTCTTAG-CCGTGTGA
6923351 CTTCAATTTG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 1 0.02
30 43 0.98
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (30 bp):
TGTCTTAGCCGTGTGAAGTACACAGGCATG
Found at i:6924032 original size:42 final size:41
Alignment explanation
Indices: 6923973--6924083 Score: 143
Period size: 42 Copynumber: 2.7 Consensus size: 41
6923963 ATAGGATACG
*
6923973 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGAT-TGAGATCCT-A
* * *
6924015 TGTAAGACCGTAGCTGGGCTATTGGCATCGATTGAGATCCTA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATTGAGATCCTA
*
6924057 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
6924084 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 6 0.10
42 41 0.69
43 12 0.20
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATTGAGATCCTA
Found at i:6931248 original size:23 final size:24
Alignment explanation
Indices: 6931205--6931254 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
6931195 ATGTTTAGTT
* *
6931205 TCATCTCTCGAATAAATCAAAATA
1 TCATCTATCGAATAAATCAAAAAA
6931229 TCATCTAT-GAATACAA-CAAAAAA
1 TCATCTATCGAATA-AATCAAAAAA
6931252 TCA
1 TCA
6931255 ATTTAGGTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.50, C:0.20, G:0.04, T:0.26
Consensus pattern (24 bp):
TCATCTATCGAATAAATCAAAAAA
Found at i:6944294 original size:49 final size:49
Alignment explanation
Indices: 6944182--6944355 Score: 155
Period size: 49 Copynumber: 3.7 Consensus size: 49
6944172 ACACATCAAA
* * *
6944182 GTCGATGCCATGTCCCAGATAGGTCTTACACTAACTTTCATATATCGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* *** *
6944231 G-CTAATGTTGTGTCCCAGACAGGTCTTACACTGACTCTCATCTATCG-G
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * * *
6944279 TGTCGATGCCATGTCCCAGACAGGTCTTACATTGA--CACACA-A-CAAG
1 -GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* *
6944325 CT-GACGCCATGTCCCAGACAGGTCTTACACT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACT
6944356 AGCTTGTATA
Statistics
Matches: 101, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
44 27 0.27
45 2 0.02
46 2 0.02
47 3 0.03
48 2 0.02
49 64 0.63
50 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
Found at i:6945966 original size:68 final size:68
Alignment explanation
Indices: 6945886--6946037 Score: 186
Period size: 67 Copynumber: 2.2 Consensus size: 68
6945876 ACATCATTGT
** * *
6945886 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCATGATACTAGTGAAGGACACCA
6945949 TGTAG
64 TGTAG
* * *
6945954 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCATGGTTCTAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCATGATACTA-GTGAAGGACACCAT
6946017 GTAG
65 GTAG
6946021 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
6946038 TAAACTGGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
64 24 0.33
65 3 0.04
66 3 0.04
67 27 0.38
68 15 0.21
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCATGATACTAGTGAAGGACACCATG
TAG
Found at i:6951937 original size:17 final size:19
Alignment explanation
Indices: 6951907--6951942 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
6951897 GTGTAGTTTA
6951907 CCCGTGTGGAGCCCACATG
1 CCCGTGTGGAGCCCACATG
6951926 CCCGTG-GG-GCCCACATG
1 CCCGTGTGGAGCCCACATG
6951943 GCCCATTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.14, C:0.39, G:0.33, T:0.14
Consensus pattern (19 bp):
CCCGTGTGGAGCCCACATG
Found at i:6957828 original size:49 final size:51
Alignment explanation
Indices: 6957754--6957886 Score: 155
Period size: 51 Copynumber: 2.6 Consensus size: 51
6957744 ATCTGGTATG
* * * *
6957754 CATAGTAGCTTGTACTTAGTACTACATATGCGATC-AA-TTATTC-GGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGATCGAAGTTA-TCAAGTACA
* * * * *
6957803 CGTAGTAGCCTGCACTTAGTTCTACACACGTGATCGAAGTTATCAAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGATCGAAGTTATCAAGTACA
6957854 CATAGTAGCCTGCACTTAGTACTACACATGCGA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGA
6957887 CCTCACAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
49 28 0.41
50 4 0.06
51 36 0.53
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGATCGAAGTTATCAAGTACA
Found at i:6976114 original size:27 final size:26
Alignment explanation
Indices: 6976066--6976125 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
6976056 GCGAGGCTGC
*
6976066 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
6976093 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
6976119 CAAATAT
1 CAGATAT
6976126 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:6978118 original size:30 final size:30
Alignment explanation
Indices: 6978084--6978144 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
6978074 TTCCCGAGCC
6978084 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
6978114 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
6978144 T
1 T
6978145 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:6981053 original size:25 final size:25
Alignment explanation
Indices: 6981018--6981079 Score: 110
Period size: 25 Copynumber: 2.6 Consensus size: 25
6981008 ACCCCTTGCT
6981018 TCCCCT-A-TGGCGTCACTTCCTTG
1 TCCCCTAAGTGGCGTCACTTCCTTG
6981041 TCCCCTAAGTGGCGTCACTTCCTTG
1 TCCCCTAAGTGGCGTCACTTCCTTG
6981066 TCCCCTAAGTGGCG
1 TCCCCTAAGTGGCG
6981080 CCACCTTGCC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 6 0.16
24 1 0.03
25 30 0.81
ACGTcount: A:0.11, C:0.37, G:0.21, T:0.31
Consensus pattern (25 bp):
TCCCCTAAGTGGCGTCACTTCCTTG
Found at i:6996568 original size:81 final size:81
Alignment explanation
Indices: 6996429--6996614 Score: 336
Period size: 81 Copynumber: 2.3 Consensus size: 81
6996419 ATATTCTATC
* *
6996429 ATCTTATTCATTCATACTTATGTATTGATAGAATTTAAGATTTAGGATTTGAATCATGATGCTGG
1 ATCTTATTCATTCATACTTATGTATGGATAGAATTTAAGATTTAGGATTTGAAGCATGATGCTGG
6996494 TTTTGATGAAGTTGCA
66 TTTTGATGAAGTTGCA
*
6996510 ATCTTATTCATTCACACTTATGTATGGATAGAATTTAAGATTTAGGATTTGAAGCATGATGCTGG
1 ATCTTATTCATTCATACTTATGTATGGATAGAATTTAAGATTTAGGATTTGAAGCATGATGCTGG
6996575 TTTTGATGAAGTTGCA
66 TTTTGATGAAGTTGCA
*
6996591 ATCTTATTCATTCATACTAATGTA
1 ATCTTATTCATTCATACTTATGTA
6996615 CTGTCAATGT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (81 bp):
ATCTTATTCATTCATACTTATGTATGGATAGAATTTAAGATTTAGGATTTGAAGCATGATGCTGG
TTTTGATGAAGTTGCA
Found at i:7003577 original size:20 final size:20
Alignment explanation
Indices: 7003524--7003606 Score: 87
Period size: 20 Copynumber: 4.0 Consensus size: 20
7003514 TCGAAATGCT
*
7003524 AACAGAGGCACTGTAGTGCAA
1 AACAGAGGCACTGAAGTGC-A
* *
7003545 ATATAGAGACACTGAAGTGCA
1 A-ACAGAGGCACTGAAGTGCA
*
7003566 AACAGAGGCACT-ACAATGCA
1 AACAGAGGCACTGA-AGTGCA
*
7003586 AACAAAGGCACTGAAGTGCA
1 AACAGAGGCACTGAAGTGCA
7003606 A
1 A
7003607 TCCTGTACAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
19 1 0.02
20 31 0.61
21 4 0.08
22 15 0.29
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.13
Consensus pattern (20 bp):
AACAGAGGCACTGAAGTGCA
Found at i:7003586 original size:42 final size:40
Alignment explanation
Indices: 7003524--7003606 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 40
7003514 TCGAAATGCT
** * *
7003524 AACAGAGGCACTGTAGTGCAAATATAGAGACACTGAAGTGCA
1 AACAGAGGCACTACAATGCAAACA-A-AGACACTGAAGTGCA
*
7003566 AACAGAGGCACTACAATGCAAACAAAGGCACTGAAGTGCA
1 AACAGAGGCACTACAATGCAAACAAAGACACTGAAGTGCA
7003606 A
1 A
7003607 TCCTGTACAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
40 15 0.42
41 1 0.03
42 20 0.56
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.13
Consensus pattern (40 bp):
AACAGAGGCACTACAATGCAAACAAAGACACTGAAGTGCA
Found at i:7018440 original size:40 final size:40
Alignment explanation
Indices: 7018381--7018528 Score: 244
Period size: 40 Copynumber: 3.7 Consensus size: 40
7018371 GAGCATTGGA
7018381 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
7018421 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
7018461 ATATATCCGGGCTAAGACCCGAAGGCAATTATG-GAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCG-AGTTG
* *
7018501 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
7018529 ATGTGTTTGC
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 100 0.99
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:7026456 original size:27 final size:26
Alignment explanation
Indices: 7026425--7026602 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
7026415 TAAATTGTAC
7026425 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
7026452 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
7026478 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
7026506 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
7026534 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
7026561 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
7026588 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7026603 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:7026541 original size:82 final size:81
Alignment explanation
Indices: 7026426--7026581 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7026416 AAATTGTACA
* * *
7026426 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
7026490 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7026507 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
7026572 TGCGAGTTGA
65 TGCGAATTGA
7026582 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7026593 original size:82 final size:81
Alignment explanation
Indices: 7026422--7026602 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
7026412 GATTAAATTG
* * *
7026422 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7026487 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7026503 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7026567 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7026585 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7026603 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7030944 original size:4 final size:4
Alignment explanation
Indices: 7030935--7030959 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7030925 CCAGTATGCA
7030935 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
7030960 TCAAAACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:7031678 original size:472 final size:478
Alignment explanation
Indices: 7030777--7031732 Score: 1582
Period size: 472 Copynumber: 2.0 Consensus size: 478
7030767 TTCATGCATA
* *
7030777 ATTCCATTAAAATGTTCATAAGTTCACTCAATCCTATTCACATCACAAATCTCACAAGTTAGTGA
1 ATTCCATTAAAATGCTCATAAGTTCACTCAATCCTATTCACATCACAAATCTCACAAGTTAATGA
*
7030842 GTTCAACAATGAAACATATAATCTTACCATATCATGAAACATGTATTAGGAACATATCAATATAC
66 GTTCAACAATGAAACACATAATCTTACCATATCATGAAACATGTATTAGGAACATATCAATATAC
*
7030907 ATTCCATTCATCAAATCTCCAGTATGCATCATTCATTCATTCATTCATTCATTTCAAAACATTTA
131 ATTCCATTCATCAAATCTCCA-TATG----A-TCATGCATTCATTCATTCATTTCAAAACATTTA
* * * * * *
7030972 TACCAACGCTTTCCATTTCATCTATCAAAACCGTATAACATTTCTTATAATTAAGTTGACTTGAT
190 TACCAACGCTTTCCATTTCATCTATAAAAACCATAAAACATTTCCTACAATTAAGTTCACTTGAT
*
7031037 TAAGCATTTATTACCCGTTGAACCAAATGAAATAATATCAGATAGTCGGGAAAATGCTCACACAG
255 TAAGCATTTATTACCCGTTGAACAAAATGAAATAATATCAGATAGTCGGGAAAATGCTCACACAG
*
7031102 CTGTGACTGTAATCATATATGCTCACACGAGCTATTGGTCAGGATGTTAAGCTACACGATGCTGC
320 CTGTGACTGTAATCATATATGCTCACACGAGCTATGGGTCAGGATGTTAAGCTACACGATGCTGC
* * *
7031167 TCACACGAGTTGTGGAGAATTCGCAACAAATGGAAGACCTTCACCATCGATATGACATCCAAGAA
385 TCACACGAGTTGTGGAGAATTCGCAACAAATGAAAGACCTTAACCATAGATATGACATCCAAGAA
*
7031232 AAACACCCAAAACTGTAACAACCCCTAAT
450 AAACACCCAAAACTATAACAACCCCTAAT
7031261 ATTCCATTAAAATGCTCATAAGTTCACTCAATCCTATTCACATCACAAATCTCACAAGTTAATGA
1 ATTCCATTAAAATGCTCATAAGTTCACTCAATCCTATTCACATCACAAATCTCACAAGTTAATGA
*
7031326 GTTCAACAATGAAACACATAATCTTACCATATCATGAAACATGTATTAGGAGCATATCAATATAC
66 GTTCAACAATGAAACACATAATCTTACCATATCATGAAACATGTATTAGGAACATATCAATATAC
*
7031391 ATTCCATTCATCGAATCT-C-TA-G-T-ATGCA-TCATTCATTCATTTCAAAACATTTATACCAA
131 ATTCCATTCATCAAATCTCCATATGATCATGCATTCATTCATTCATTTCAAAACATTTATACCAA
7031450 CGCTTTCCATTTCATCTATAAAAACCATAAAACATTTCCTACAATTAAGTTCACTTGATTAAGCA
196 CGCTTTCCATTTCATCTATAAAAACCATAAAACATTTCCTACAATTAAGTTCACTTGATTAAGCA
7031515 TTTATTACCCGTTGAACAAAATGAAATAATATCAGATAGTCGGGAAAATGCTCACACAGCTGTGA
261 TTTATTACCCGTTGAACAAAATGAAATAATATCAGATAGTCGGGAAAATGCTCACACAGCTGTGA
* * * *
7031580 CTGTAATCGTATATGCTCACACGAGCTATGGGTCAGGATGTTAGGCTACACGATGCTGTTGACAC
326 CTGTAATCATATATGCTCACACGAGCTATGGGTCAGGATGTTAAGCTACACGATGCTGCTCACAC
* * *
7031645 GAGTTGTGGAGAATTCGCAACAAATGAAAGACCTTAACCATAGGTATGACATCCAAGACAAGCAC
391 GAGTTGTGGAGAATTCGCAACAAATGAAAGACCTTAACCATAGATATGACATCCAAGAAAAACAC
*
7031710 CCAAAACTATAATAACCCCTAAT
456 CCAAAACTATAACAACCCCTAAT
7031733 GACCTGTCAT
Statistics
Matches: 446, Mismatches: 26, Indels: 12
0.92 0.05 0.02
Matches are distributed among these distances:
472 294 0.66
473 4 0.01
474 1 0.00
480 1 0.00
481 2 0.00
483 1 0.00
484 143 0.32
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (478 bp):
ATTCCATTAAAATGCTCATAAGTTCACTCAATCCTATTCACATCACAAATCTCACAAGTTAATGA
GTTCAACAATGAAACACATAATCTTACCATATCATGAAACATGTATTAGGAACATATCAATATAC
ATTCCATTCATCAAATCTCCATATGATCATGCATTCATTCATTCATTTCAAAACATTTATACCAA
CGCTTTCCATTTCATCTATAAAAACCATAAAACATTTCCTACAATTAAGTTCACTTGATTAAGCA
TTTATTACCCGTTGAACAAAATGAAATAATATCAGATAGTCGGGAAAATGCTCACACAGCTGTGA
CTGTAATCATATATGCTCACACGAGCTATGGGTCAGGATGTTAAGCTACACGATGCTGCTCACAC
GAGTTGTGGAGAATTCGCAACAAATGAAAGACCTTAACCATAGATATGACATCCAAGAAAAACAC
CCAAAACTATAACAACCCCTAAT
Found at i:7034807 original size:9 final size:9
Alignment explanation
Indices: 7034793--7034818 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7034783 CCCTATTCAA
7034793 ATAATATTT
1 ATAATATTT
7034802 ATAATATTT
1 ATAATATTT
7034811 ATAATATT
1 ATAATATT
7034819 CATTATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
ATAATATTT
Found at i:7037571 original size:22 final size:24
Alignment explanation
Indices: 7037527--7037572 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
7037517 CTTTCATACA
*
7037527 TCCCATAAAAAGGGCTCTTATATG
1 TCCCATAAAAAGGGCTCTCATATG
7037551 TCCCAT-AAAA-GGCTCTCATATG
1 TCCCATAAAAAGGGCTCTCATATG
7037573 CTGGTGCGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.52
23 4 0.19
24 6 0.29
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (24 bp):
TCCCATAAAAAGGGCTCTCATATG
Found at i:7040655 original size:11 final size:11
Alignment explanation
Indices: 7040639--7040668 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
7040629 AAGCCTTCAA
7040639 AATTTTTTTAT
1 AATTTTTTTAT
7040650 AA-TTTTTTAT
1 AATTTTTTTAT
7040660 AATTTTTTT
1 AATTTTTTT
7040669 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
AATTTTTTTAT
Found at i:7040676 original size:10 final size:10
Alignment explanation
Indices: 7040638--7040676 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
7040628 AAAGCCTTCA
7040638 AAATTTTTTT
1 AAATTTTTTT
7040648 ATAATTTTTTAT
1 A-AATTTTTT-T
*
7040660 AATTTTTTTT
1 AAATTTTTTT
7040670 AAATTTT
1 AAATTTT
7040677 AAAGTTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 8 0.32
11 15 0.60
12 2 0.08
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
AAATTTTTTT
Found at i:7041751 original size:45 final size:46
Alignment explanation
Indices: 7041666--7041752 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 46
7041656 AATGAATAGA
*
7041666 AATGGAGAAATGGAAAACATTCAAAAATGATTATGGTTTTCTCCAG
1 AATGGAGAAATGGAAAACATTCAAAAATGAATATGGTTTTCTCCAG
* * * * *
7041712 AATGGGGAAATGG-AATCATTTAGAAATGAATGTGGTTTTCT
1 AATGGAGAAATGGAAAACATTCAAAAATGAATATGGTTTTCT
7041753 AAAAACGGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
45 23 0.66
46 12 0.34
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (46 bp):
AATGGAGAAATGGAAAACATTCAAAAATGAATATGGTTTTCTCCAG
Found at i:7042248 original size:15 final size:15
Alignment explanation
Indices: 7042228--7042259 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7042218 CATTTCACTA
*
7042228 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
7042243 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
7042258 TT
1 TT
7042260 TGTATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:7042755 original size:32 final size:32
Alignment explanation
Indices: 7042719--7042779 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
7042709 TAATATTATT
7042719 TTAATAGT-TTAATATTAAATTTAAT-TTAATAC
1 TTAATAGTATT-ATATT-AATTTAATATTAATAC
*
7042751 TTAATAGTATTTTATTAATTTAATATTAA
1 TTAATAGTATTATATTAATTTAATATTAA
7042780 AGTAATTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 8 0.31
32 16 0.62
33 2 0.08
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (32 bp):
TTAATAGTATTATATTAATTTAATATTAATAC
Found at i:7042794 original size:26 final size:27
Alignment explanation
Indices: 7042736--7042795 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
7042726 TTTAATATTA
*
7042736 AATTTAATTTAATACTTAATAGTATTT
1 AATTTAATTTAATACTTAATAGTAATT
*
7042763 TA-TTAATTTAATA-TTAA-AGTAATT
1 AATTTAATTTAATACTTAATAGTAATT
7042787 AAGTTTAAT
1 AA-TTTAAT
7042796 CATAGTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 7 0.25
25 4 0.14
26 16 0.57
27 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (27 bp):
AATTTAATTTAATACTTAATAGTAATT
Found at i:7061727 original size:21 final size:21
Alignment explanation
Indices: 7061686--7061728 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7061676 AATAAAGTAG
*
7061686 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
7061707 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
7061728 A
1 A
7061729 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:7061780 original size:18 final size:18
Alignment explanation
Indices: 7061759--7061911 Score: 74
Period size: 18 Copynumber: 8.9 Consensus size: 18
7061749 ATATTAAGAA
7061759 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
7061777 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
*
7061792 -TTTAAT-AATTAT-TAT
1 TTTTATTAAATTATATAT
* * * *
7061807 TTTAAATTATATTTTATAG
1 TTT-TATTAAATTATATAT
* *
7061826 TATTA-TATATTAT-TA-
1 TTTTATTAAATTATATAT
* *
7061841 TTTTAGTAAATTCATATAAG
1 TTTTATTAAATT-ATAT-AT
** * * * *
7061861 AATAATTATATTA-AGAA
1 TTTTATTAAATTATATAT
7061878 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
7061896 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
7061912 TTAATAATAN
Statistics
Matches: 98, Mismatches: 24, Indels: 26
0.66 0.16 0.18
Matches are distributed among these distances:
13 2 0.02
14 8 0.08
15 5 0.05
16 13 0.13
17 22 0.22
18 35 0.36
19 6 0.06
20 7 0.07
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:7061919 original size:119 final size:119
Alignment explanation
Indices: 7061693--7061919 Score: 420
Period size: 119 Copynumber: 1.9 Consensus size: 119
7061683 TAGATTATAT
*
7061693 ATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGA
1 ATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAAGA
7061758 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
66 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
*
7061812 ATTATATTTTATAGTATTATATATTATTATTTTAGTAAATTCATATAAGAATAATT-ATATTAAG
1 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAAG
7061876 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAAT
65 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAAT
7061920 ANNNNNNNNN
Statistics
Matches: 105, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
119 57 0.54
120 48 0.46
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (119 bp):
ATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAAGA
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
Found at i:7071835 original size:27 final size:27
Alignment explanation
Indices: 7071797--7071860 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
7071787 TGCCAGGCCT
*
7071797 ACTGGCGATCCCTGCTTCGCTAAACCC
1 ACTGGCGATCCCTACTTCGCTAAACCC
7071824 ACTGGCGATCCCTACTTCGCTAAACCC
1 ACTGGCGATCCCTACTTCGCTAAACCC
*
7071851 ACTAGCGATC
1 ACTGGCGATC
7071861 ATAGTTCGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22
Consensus pattern (27 bp):
ACTGGCGATCCCTACTTCGCTAAACCC
Found at i:7077434 original size:41 final size:41
Alignment explanation
Indices: 7077294--7077436 Score: 153
Period size: 41 Copynumber: 3.5 Consensus size: 41
7077284 TACCTGGTAC
* ** * * *
7077294 AATACATTGGCACGAAGATTGCCAAGCTCAAAGCCTGATAT
1 AATACACTGGCACGAAGCCTACTAAGCACAAAGCCTGATAT
** * * *
7077335 AATACACTAACACGAAGCCTGCTAGGCATAAAGCCTGATAT
1 AATACACTGGCACGAAGCCTACTAAGCACAAAGCCTGATAT
*
7077376 AATACACTGGCATGAAGCCTACTAAGCACAAAGCCTGATAT
1 AATACACTGGCACGAAGCCTACTAAGCACAAAGCCTGATAT
*
7077417 AATAC-GTCGGCACGAAGCCT
1 AATACACT-GGCACGAAGCCT
7077437 GTTAGGCATA
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
40 1 0.01
41 83 0.99
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
AATACACTGGCACGAAGCCTACTAAGCACAAAGCCTGATAT
Found at i:7080687 original size:16 final size:16
Alignment explanation
Indices: 7080666--7080696 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7080656 TTCACTATTA
*
7080666 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
7080682 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
7080697 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:7083032 original size:68 final size:68
Alignment explanation
Indices: 7082882--7083185 Score: 338
Period size: 68 Copynumber: 4.5 Consensus size: 68
7082872 TATAGCTCAA
* * * * * * *
7082882 CTATAGTCTTACGCAATATGATGTCATGTTTTATTGTCCTGACAAACTTTATTTGTTACCATAAC
1 CTATGGTCTTACACAATATGATGTCATG-TTTACTGTCCTGACAGACTTCATATGTTGCCATAAC
7082947 CCAG
65 CCAG
* ** * *
7082951 CTGTGGTCTTACACAATATGATACCATGTTTACTGTCCTGACAGACTTCATATGTTGTCATAGCC
1 CTATGGTCTTACACAATATGATGTCATGTTTACTGTCCTGACAGACTTCATATGTTGCCATAACC
7083016 CAG
66 CAG
* *
7083019 CTATGGTCGTACACAATATGATGTCATGTTTACTGTCCTGGCAGACTTCATATGTTGCCATAACC
1 CTATGGTCTTACACAATATGATGTCATGTTTACTGTCCTGACAGACTTCATATGTTGCCATAACC
*
7083084 CAA
66 CAG
* * * * * * * * ** *
7083087 CTATGATATTACATAATATGATATCGTGTTTACTGTCCTGGCGGACTTCATAGGTTTTCATAGCC
1 CTATGGTCTTACACAATATGATGTCATGTTTACTGTCCTGACAGACTTCATATGTTGCCATAACC
*
7083152 TAG
66 CAG
* *
7083155 TTATGGTCTTACACAGTATGATGTCATGTTT
1 CTATGGTCTTACACAATATGATGTCATGTTT
7083186 TCCCATGGAC
Statistics
Matches: 195, Mismatches: 40, Indels: 1
0.83 0.17 0.00
Matches are distributed among these distances:
68 172 0.88
69 23 0.12
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (68 bp):
CTATGGTCTTACACAATATGATGTCATGTTTACTGTCCTGACAGACTTCATATGTTGCCATAACC
CAG
Found at i:7083118 original size:136 final size:136
Alignment explanation
Indices: 7082895--7083185 Score: 384
Period size: 136 Copynumber: 2.1 Consensus size: 136
7082885 TAGTCTTACG
* * * * * * *
7082895 CAATATGATGTCATGTTTTATTGTCCTGACAAACTTTATTTGTTACCATAACCCAGCTGTGGTCT
1 CAATATGATGTCATG-TTTACTGTCCTGACAAACTTCATATGTTACCATAACCCAACTATGATAT
*
7082960 TACACAATATGATACCATGTTTACTGTCCTGACAGACTTCATATGTTGTCATAGCCCAGCTATGG
65 TACACAATATGATACCATGTTTACTGTCCTGACAGACTTCATAGGTTGTCATAGCCCAGCTATGG
7083025 TCGTACA
130 TCGTACA
* * *
7083032 CAATATGATGTCATGTTTACTGTCCTGGCAGACTTCATATGTTGCCATAACCCAACTATGATATT
1 CAATATGATGTCATGTTTACTGTCCTGACAAACTTCATATGTTACCATAACCCAACTATGATATT
* * * * * * * *
7083097 ACATAATATGATATCGTGTTTACTGTCCTGGCGGACTTCATAGGTTTTCATAGCCTAGTTATGGT
66 ACACAATATGATACCATGTTTACTGTCCTGACAGACTTCATAGGTTGTCATAGCCCAGCTATGGT
*
7083162 CTTACA
131 CGTACA
*
7083168 CAGTATGATGTCATGTTT
1 CAATATGATGTCATGTTT
7083186 TCCCATGGAC
Statistics
Matches: 133, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
136 118 0.89
137 15 0.11
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (136 bp):
CAATATGATGTCATGTTTACTGTCCTGACAAACTTCATATGTTACCATAACCCAACTATGATATT
ACACAATATGATACCATGTTTACTGTCCTGACAGACTTCATAGGTTGTCATAGCCCAGCTATGGT
CGTACA
Found at i:7087383 original size:22 final size:22
Alignment explanation
Indices: 7087352--7087395 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7087342 TACCAAATTG
7087352 ATTAGATTAAATTG-AAATTTT
1 ATTAGATTAAATTGAAAATTTT
7087373 ATTAGCATTAAATTGAAAATTTT
1 ATTAG-ATTAAATTGAAAATTTT
7087396 TGGAAGGGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.45
Consensus pattern (22 bp):
ATTAGATTAAATTGAAAATTTT
Found at i:7104241 original size:61 final size:61
Alignment explanation
Indices: 7104169--7104284 Score: 223
Period size: 61 Copynumber: 1.9 Consensus size: 61
7104159 TTGTTTCATT
7104169 CCCCCCCCCCTATGGGGGGCTTAATTATCTATTAACTAGCATTGATCACCCCGCCTCATCC
1 CCCCCCCCCCTATGGGGGGCTTAATTATCTATTAACTAGCATTGATCACCCCGCCTCATCC
*
7104230 CCCCCCCCCCTATGGGGGTCTTAATTATCTATTAACTAGCATTGATCACCCCGCC
1 CCCCCCCCCCTATGGGGGGCTTAATTATCTATTAACTAGCATTGATCACCCCGCC
7104285 AATGCTTGGG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.20, C:0.39, G:0.15, T:0.27
Consensus pattern (61 bp):
CCCCCCCCCCTATGGGGGGCTTAATTATCTATTAACTAGCATTGATCACCCCGCCTCATCC
Found at i:7108361 original size:28 final size:28
Alignment explanation
Indices: 7108329--7108397 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
7108319 TAATGAGATT
* *
7108329 AGCACTAAGTGTGCGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGAGATTAATTATAA
* *
7108357 AGCACTAAGTGTGCGAGATTGATTATTA
1 AGCACTAAGTGTGCGAGATTAATTATAA
7108385 AGCACTAAGTGTG
1 AGCACTAAGTGTG
7108398 TAAACTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTAATTATAA
Found at i:7109153 original size:23 final size:23
Alignment explanation
Indices: 7109124--7109362 Score: 194
Period size: 23 Copynumber: 10.1 Consensus size: 23
7109114 TGATGCTTAA
7109124 ATGCTGCCCAATTTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * *
7109147 ATACTGCTCAATTTGTTGCATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * *
7109170 ATGCTGTCCAATTT-TTGATGCTTAA
1 ATGCTGCCCAATTTGTTG-T--ATAT
*
7109195 ATGCTGCCCAATTTGTTGTATTT
1 ATGCTGCCCAATTTGTTGTATAT
*
7109218 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * * *
7109241 ATGCTGTCCAATTTTTGGTGTAAAAA
1 ATGCTGCCCAA--TTTGTTGT-ATAT
* * *
7109267 ATGCTGCTCAATTTGTTGTTTTT
1 ATGCTGCCCAATTTGTTGTATAT
*
7109290 ATGCTGCTCAAATTT-TTGTATAT
1 ATGCTGC-CCAATTTGTTGTATAT
* * * *
7109313 ATGCTGTCCAATTTTTGGTGTAAAA
1 ATGCTGCCCAA--TTTGTTGTATAT
*
7109338 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
7109361 AT
1 AT
7109363 ATGTTGTCCA
Statistics
Matches: 164, Mismatches: 41, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
22 6 0.04
23 92 0.56
24 15 0.09
25 37 0.23
26 14 0.09
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (23 bp):
ATGCTGCCCAATTTGTTGTATAT
Found at i:7109293 original size:72 final size:71
Alignment explanation
Indices: 7109122--7109358 Score: 350
Period size: 71 Copynumber: 3.3 Consensus size: 71
7109112 TTTGATGCTT
* * * *
7109122 AAATGCTGCCCAATTTGTTGTATATATACTGCTCAATTTGTTGCATATATGCTGTCCAATTTTTG
1 AAATGCTGCCCAATTTGTTGTATTTATGCTGCTCAAATTGTTGTATATATGCTGTCCAATTTTTG
* *
7109187 ATGCT-T
66 GTG-TAA
*
7109193 AAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTTG
1 AAATGCTGCCCAATTTGTTGTATTTATGCTGCTCAAATTGTTGTATATATGCTGTCCAATTTTTG
7109258 GTGTAAA
66 GTGT-AA
* * *
7109265 AAATGCTGCTCAATTTGTTGTTTTTATGCTGCTCAAATTTTTGTATATATGCTGTCCAATTTTTG
1 AAATGCTGCCCAATTTGTTGTATTTATGCTGCTCAAATTGTTGTATATATGCTGTCCAATTTTTG
7109330 GTGTAA
66 GTGTAA
*
7109336 AAATGCTGCCCAAATTGTTGTAT
1 AAATGCTGCCCAATTTGTTGTAT
7109359 ATATATGTTG
Statistics
Matches: 150, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
70 1 0.01
71 84 0.56
72 65 0.43
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.43
Consensus pattern (71 bp):
AAATGCTGCCCAATTTGTTGTATTTATGCTGCTCAAATTGTTGTATATATGCTGTCCAATTTTTG
GTGTAA
Found at i:7109350 original size:48 final size:50
Alignment explanation
Indices: 7109290--7109393 Score: 149
Period size: 50 Copynumber: 2.1 Consensus size: 50
7109280 TGTTGTTTTT
* * *
7109290 ATGCTGCTCAAATT-TT-TGTATATATGCTGTCCAATTTTTGGTGTAAAA
1 ATGCTGCCCAAATTGTTGTATATATATGCTGTCCAAATTTTGGTGTAAAA
* *
7109338 ATGCTGCCCAAATTGTTGTATATATATGTTGTCCAAATTTTGGTGTGAAA
1 ATGCTGCCCAAATTGTTGTATATATATGCTGTCCAAATTTTGGTGTAAAA
7109388 ATGCTG
1 ATGCTG
7109394 TCTTGTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
48 13 0.27
49 2 0.04
50 34 0.69
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.41
Consensus pattern (50 bp):
ATGCTGCCCAAATTGTTGTATATATATGCTGTCCAAATTTTGGTGTAAAA
Found at i:7109407 original size:48 final size:48
Alignment explanation
Indices: 7109308--7109424 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 48
7109298 CAAATTTTTG
*
7109308 TATATATGCTGTCCAATTTTTGGTGTAAAAATGCTGCCCAAATTGTTGTA
1 TATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCCC--ATTGTTGTA
* * *
7109358 TATATATGTTGTCCAAATTTTGGTGTGAAAATGCTG-TC-TTGTTTGGTA
1 TATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCCCATTG-TT-GTA
*
7109406 TATAAATGCTGTCCAAATT
1 TATATATGCTGTCCAAATT
7109425 GATGAATAAG
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
46 3 0.05
47 2 0.03
48 20 0.34
49 1 0.02
50 33 0.56
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (48 bp):
TATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCCCATTGTTGTA
Found at i:7122082 original size:36 final size:35
Alignment explanation
Indices: 7121997--7122089 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
7121987 CCCAAGAGAT
* * * * *
7121997 AGTCCAACCAAAAAACGCCAATACTCATAAGAGTT
1 AGTCAAACCGAAACACGCTAATACTCATAAGAGTA
* *
7122032 AGTCTAACCGAAACACGCTAATGCTCATAAGAGCTA
1 AGTCAAACCGAAACACGCTAATACTCATAAGAG-TA
*
7122068 AGTCAAACCGAAACACGTTAAT
1 AGTCAAACCGAAACACGCTAAT
7122090 CAGATAATAT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 28 0.57
36 21 0.43
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.18
Consensus pattern (35 bp):
AGTCAAACCGAAACACGCTAATACTCATAAGAGTA
Found at i:7125420 original size:17 final size:18
Alignment explanation
Indices: 7125398--7125433 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7125388 CCACATAATC
*
7125398 AATTAATTA-ATTTTTAA
1 AATTAAATATATTTTTAA
7125415 AATTAAATATATTTTTAA
1 AATTAAATATATTTTTAA
7125433 A
1 A
7125434 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTAAATATATTTTTAA
Found at i:7134157 original size:3 final size:3
Alignment explanation
Indices: 7134151--7134190 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
7134141 CATCATCATC
**
7134151 ATT ATT ATT ATT ATT ATT ACC ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7134191 AATTGTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:7138519 original size:17 final size:18
Alignment explanation
Indices: 7138485--7138530 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
7138475 CCGTTATGTC
7138485 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
7138500 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
7138517 CGCGACCGCGACCG
1 CGCGACCGCGACCG
7138531 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Done.