Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 24 of 185
Found at i:7143450 original size:30 final size:30
Alignment explanation
Indices: 7143411--7143467 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7143401 ATCAAAATGT
*
7143411 AAACTTACTTT-TCCATAATATAATTAACAA
1 AAACATACTTTCT-CATAATATAATTAACAA
7143441 AAACATACTTTCTCATAATATAATTAA
1 AAACATACTTTCTCATAATATAATTAA
7143468 TATAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (30 bp):
AAACATACTTTCTCATAATATAATTAACAA
Found at i:7143928 original size:3 final size:3
Alignment explanation
Indices: 7143922--7144039 Score: 236
Period size: 3 Copynumber: 39.3 Consensus size: 3
7143912 AACCACTACC
7143922 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7143970 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7144018 TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
7144040 CATGTAACTT
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 115 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7144539 original size:15 final size:14
Alignment explanation
Indices: 7144513--7144548 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7144503 AAATTCACAA
*
7144513 AAAAACATTAAATT
1 AAAAATATTAAATT
7144527 AATAAATATTAAATT
1 AA-AAATATTAAATT
7144542 AAAAATA
1 AAAAATA
7144549 ACATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAAATATTAAATT
Found at i:7149037 original size:43 final size:43
Alignment explanation
Indices: 7148984--7149240 Score: 212
Period size: 43 Copynumber: 6.0 Consensus size: 43
7148974 TACTTCGGTT
* *
7148984 TATCCGATGATGCACTGTGTCTGCCAATATATTTGCTTCGATA
1 TATCCGATGATGCACTGTGTGTGCCAGTATATTTGCTTCGATA
* * * ** *
7149027 TATCCGATGATGCATTGTGTCTGCCAGCATATTTTTTTC-AGTT
1 TATCCGATGATGCACTGTGTGTGCCAGTATATTTGCTTCGA-TA
* * ** * * *
7149070 TATCTGATGATGCACTGTTTGTGTTAGTATATTTTCTTTGGTA
1 TATCCGATGATGCACTGTGTGTGCCAGTATATTTGCTTCGATA
* *
7149113 TATCCGATGATACACTGTGTGTGCCAGTATCTTTGCTTCG-TA
1 TATCCGATGATGCACTGTGTGTGCCAGTATATTTGCTTCGATA
** * * * * * *
7149155 TATCTAATGATGCACTATATGTGCCAGTATATTTTCTTTGGTTT
1 TATCCGATGATGCACTGTGTGTGCCAGTATATTTGC-TTCGATA
* * * * *
7149199 TATCCGATGATGAACTATGTGTGCTAGTATAGTAGCTTCGAT
1 TATCCGATGATGCACTGTGTGTGCCAGTATATTTGCTTCGAT
7149241 TTCATCTGGT
Statistics
Matches: 166, Mismatches: 44, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
42 32 0.19
43 105 0.63
44 29 0.17
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.42
Consensus pattern (43 bp):
TATCCGATGATGCACTGTGTGTGCCAGTATATTTGCTTCGATA
Found at i:7149132 original size:86 final size:85
Alignment explanation
Indices: 7148976--7149209 Score: 252
Period size: 86 Copynumber: 2.7 Consensus size: 85
7148966 ACAGGTTATA
* * * * * * * *
7148976 CTTCGGTTTATCCGATGATGCACTGTGTCTGCCAATATATTTGCTTCGATATATCCGATGATGCA
1 CTTC-GTTTATCTGATGATGCACTGTATGTGCCAGTATATTTTCTTTGGTATATCCGATGATACA
* *
7149041 TTGTGTCTGCCAGCATATTTT
65 CTGTGTCTGCCAGCATATTTG
* * **
7149062 TTTCAGTTTATCTGATGATGCACTGTTTGTGTTAGTATATTTTCTTTGGTATATCCGATGATACA
1 CTTC-GTTTATCTGATGATGCACTGTATGTGCCAGTATATTTTCTTTGGTATATCCGATGATACA
* * *
7149127 CTGTGTGTGCCAGTATCTTTG
65 CTGTGTCTGCCAGCATATTTG
* * * *
7149148 CTTCGTATATCTAATGATGCACTATATGTGCCAGTATATTTTCTTTGGTTTTATCCGATGAT
1 CTTCGTTTATCTGATGATGCACTGTATGTGCCAGTATATTTTCTTTGG-TATATCCGATGAT
7149210 GAACTATGTG
Statistics
Matches: 122, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
85 38 0.31
86 84 0.69
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (85 bp):
CTTCGTTTATCTGATGATGCACTGTATGTGCCAGTATATTTTCTTTGGTATATCCGATGATACAC
TGTGTCTGCCAGCATATTTG
Found at i:7149227 original size:129 final size:129
Alignment explanation
Indices: 7148984--7149229 Score: 307
Period size: 129 Copynumber: 1.9 Consensus size: 129
7148974 TACTTCGGTT
* * * * *
7148984 TATCCGATGATGCACTGTGTCTGCCAATATATTTGCTTCGATATATCCGATGATGCATTGTGTCT
1 TATCCGATGATACACTGTGTCTGCCAATATATTTGCTTCGATATATCCAATGATGCACTATATCT
* * * * *
7149049 GCCAGCATATTTTTTTCAGTTTATCTGATGATGCACTGTTTGTGTTAGTATATTTTCTTTGGTA
66 GCCAGCATATTTTTTTCAGTTTATCCGATGATGAACTATGTGTGCTAGTATATTTTCTTTGGTA
* * * * *
7149113 TATCCGATGATACACTGTGTGTGCCAGTATCTTTGCTTCG-TATATCTAATGATGCACTATATGT
1 TATCCGATGATACACTGTGTCTGCCAATATATTTGCTTCGATATATCCAATGATGCACTATATCT
* *
7149177 GCCAGTATATTTTCTTT-GGTTTTATCCGATGATGAACTATGTGTGCTAGTATA
66 GCCAGCATATTTT-TTTCAG-TTTATCCGATGATGAACTATGTGTGCTAGTATA
7149230 GTAGCTTCGA
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
128 31 0.32
129 67 0.68
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.43
Consensus pattern (129 bp):
TATCCGATGATACACTGTGTCTGCCAATATATTTGCTTCGATATATCCAATGATGCACTATATCT
GCCAGCATATTTTTTTCAGTTTATCCGATGATGAACTATGTGTGCTAGTATATTTTCTTTGGTA
Found at i:7149431 original size:27 final size:27
Alignment explanation
Indices: 7149391--7149445 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
7149381 GTATTTGACT
7149391 TGACTCCAAAAAAGATCAATAAAGTTA
1 TGACTCCAAAAAAGATCAATAAAGTTA
* *
7149418 TGACTCCAAGAAAGATCAATAATGTTA
1 TGACTCCAAAAAAGATCAATAAAGTTA
7149445 T
1 T
7149446 AACATATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.25
Consensus pattern (27 bp):
TGACTCCAAAAAAGATCAATAAAGTTA
Found at i:7152457 original size:20 final size:20
Alignment explanation
Indices: 7152418--7152473 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
7152408 AAAGAAAGAG
7152418 AGAAAA-AAT-AAAATTAAAA
1 AGAAAATAATCAAAA-TAAAA
*
7152437 ATAAAATAATCAAAATAAAA
1 AGAAAATAATCAAAATAAAA
7152457 AGAAAATAATCAAAATA
1 AGAAAATAATCAAAATA
7152474 TTAACCAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 24 0.73
21 4 0.12
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.18
Consensus pattern (20 bp):
AGAAAATAATCAAAATAAAA
Found at i:7154688 original size:9 final size:9
Alignment explanation
Indices: 7154676--7154725 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
7154666 TCAATTCAGT
*
7154676 TAATTCGAG
1 TAATTCGGG
7154685 TAATTCGGG
1 TAATTCGGG
7154694 TAATTCGGG
1 TAATTCGGG
*
7154703 TAATTCGGT
1 TAATTCGGG
*
7154712 TAATTCGGT
1 TAATTCGGG
7154721 TAATT
1 TAATT
7154726 TTTAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (9 bp):
TAATTCGGG
Found at i:7154719 original size:18 final size:18
Alignment explanation
Indices: 7154668--7154725 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
7154658 GTAGTGATTC
* *
7154668 AATTCAGTTAATTCGAGT
1 AATTCGGTTAATTCGGGT
*
7154686 AATTCGGGTAATTCGGGT
1 AATTCGGTTAATTCGGGT
*
7154704 AATTCGGTTAATTCGGTT
1 AATTCGGTTAATTCGGGT
7154722 AATT
1 AATT
7154726 TTTAACCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (18 bp):
AATTCGGTTAATTCGGGT
Found at i:7160300 original size:23 final size:23
Alignment explanation
Indices: 7160256--7160300 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7160246 GATTTAATCA
*
7160256 CAATATAATCACATATTAACATT
1 CAATATAATCACAAATTAACATT
*
7160279 CAATTTAATCA-AAATTATACAT
1 CAATATAATCACAAATTA-ACAT
7160301 AATACAGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (23 bp):
CAATATAATCACAAATTAACATT
Found at i:7175174 original size:44 final size:42
Alignment explanation
Indices: 7175123--7175557 Score: 426
Period size: 44 Copynumber: 10.0 Consensus size: 42
7175113 TGGAGATAGC
* *
7175123 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
1 AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAAGAAA
* * *
7175165 ACGGATCTTGTCTTCATGTATCGGCATGAAGTATATCAAAGGTAGA
1 A--GATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAA-G-AAA
* * *
7175211 AGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGAAA
1 AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAAGAAA
* * * *
7175253 ACCGATCTTTTCTTCATGTATCGACATGAAGTAGATC-ATTGGTAGA
1 A--GATCTTGTCTTCATGTATCGGCATGAAGTAGATCGA--AG-AAA
* *
7175299 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATTGAAGAAA
1 AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAAGAAA
* * *
7175341 ATGGATCTTGTCTTCATGTATCGACATGAAGTAGATCAAAGGTAGA
1 A--GATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAA-G-AAA
* *
7175387 AGATCTTGTCTTCATGTATTGGCGTG-AGTAGATCGAAGAAA
1 AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAAGAAA
* *
7175428 ACGGATCTTGTCTTCATGTATCGGTATGAAGTAGATC-AAGGGTAGA
1 A--GATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAA--G-AAA
* * * **
7175474 ATATCTTGTCTTCATGTATCGGTATGAAGTAGATCAAAGGTAGT
1 AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAA-G-AAA
*
7175518 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGA
1 AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAAGA
7175558 TACAAATCTT
Statistics
Matches: 328, Mismatches: 44, Indels: 42
0.79 0.11 0.10
Matches are distributed among these distances:
41 3 0.01
42 9 0.03
43 38 0.12
44 259 0.79
45 7 0.02
46 12 0.04
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (42 bp):
AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCGAAGAAA
Found at i:7175217 original size:88 final size:88
Alignment explanation
Indices: 7175123--7175552 Score: 637
Period size: 88 Copynumber: 4.9 Consensus size: 88
7175113 TGGAGATAGC
7175123 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
*
7175188 GCATGAAGTATATCAAAGGTAGA
66 GCATGAAGTAGATCAAAGGTAGA
* * *
7175211 AGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGAAAACCGATCTTTTCTTCATGTATCG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
* **
7175276 ACATGAAGTAGATCATTGGTAGA
66 GCATGAAGTAGATCAAAGGTAGA
* * *
7175299 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATTGAAGAAAATGGATCTTGTCTTCATGTATCG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
*
7175364 ACATGAAGTAGATCAAAGGTAGA
66 GCATGAAGTAGATCAAAGGTAGA
7175387 AGATCTTGTCTTCATGTATTGGCGTG-AGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
* *
7175451 GTATGAAGTAGATCAAGGGTAGA
66 GCATGAAGTAGATCAAAGGTAGA
* * ** * ** *** *
7175474 ATATCTTGTCTTCATGTATCGGTATGAAGTAGATCAAAGGTAGTAGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
7175539 GCATGAAGTAGATC
66 GCATGAAGTAGATC
7175553 GAAGATACAA
Statistics
Matches: 308, Mismatches: 33, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
87 78 0.25
88 230 0.75
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (88 bp):
AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATCG
GCATGAAGTAGATCAAAGGTAGA
Found at i:7175800 original size:45 final size:43
Alignment explanation
Indices: 7175562--7176027 Score: 215
Period size: 44 Copynumber: 10.8 Consensus size: 43
7175552 CGAAGATACA
* * * *
7175562 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TAGT
* * * * * * * **
7175606 AATCCTATCTCCTTGAAGTTGTAGTGGAGCGGATTAAAATCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGT-AGT
* * * * *
7175650 AATCTTATCTCTCTGAAGTTGCAG-AGAACAGA-TCGCA-T-CT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGTAGT
* *
7175690 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGT-AGT
*
7175733 AAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGT
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAG-TAGT
* * * *
7175778 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCAAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TAGT
* * * **
7175823 AATCCTATCTCCCTGAAGTTGCAGTGGAGC-GAATTAA--AAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTAGT
* * * * * *
7175863 AGATCTTATCTCTCTGCAGTTGCAG-AGAGCA-AATCGCA-T-CT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGTAGT
* * * * * * *
7175904 AGTCTTATCCCCCTGAGGTTGCAGTGGGGCAGACTCAAGAAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TAGT
* * ** * *
7175948 AAGTTTTATCTCCCTGAAGTTGCAGTGGAGTAGACCCAAGAGAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TAGT
* *
7175993 AAGTCTTATCCCCCTGAAATTGCAGTAGG-GCAGAC
1 AA-TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGAC
7176028 CGAATAAACA
Statistics
Matches: 324, Mismatches: 72, Indels: 51
0.72 0.16 0.11
Matches are distributed among these distances:
40 52 0.16
41 34 0.10
42 5 0.02
43 15 0.05
44 112 0.35
45 98 0.30
46 8 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTAGT
Found at i:7176028 original size:45 final size:44
Alignment explanation
Indices: 7175904--7176028 Score: 160
Period size: 45 Copynumber: 2.8 Consensus size: 44
7175894 AATCGCATCT
* *
7175904 AGTCTTATCCCCCTGAGGTTGCAGTGGGGCAGACTCAAGAAAGCA
1 AGTCTTATCCCCCTGAAGTTGCAGT-GGGCAGACCCAAGAAAGCA
* * * *
7175949 AGTTTTATCTCCCTGAAGTTGCAGTGGAGTAGACCCAAGAGAGCA
1 AGTCTTATCCCCCTGAAGTTGCAGTGG-GCAGACCCAAGAAAGCA
*
7175994 AGTCTTATCCCCCTGAAATTGCAGTAGGGCAGACC
1 AGTCTTATCCCCCTGAAGTTGCAGT-GGGCAGACC
7176029 GAATAAACAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 2 0.03
45 64 0.94
46 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (44 bp):
AGTCTTATCCCCCTGAAGTTGCAGTGGGCAGACCCAAGAAAGCA
Found at i:7177033 original size:9 final size:10
Alignment explanation
Indices: 7177018--7177042 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7177008 TTTAAAAGGT
7177018 TTTTTTTTTG
1 TTTTTTTTTG
7177028 TTTTTTTTTG
1 TTTTTTTTTG
7177038 TTTTT
1 TTTTT
7177043 GAAAAAGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:7179009 original size:103 final size:103
Alignment explanation
Indices: 7178861--7179262 Score: 786
Period size: 103 Copynumber: 3.9 Consensus size: 103
7178851 AATAAAGCAA
*
7178861 AAAAAGAAAAAAAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
1 AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
7178926 TCTTTTATTTGGATATTTAAAATGAGTATCAGTAAAGC
66 TCTTTTATTTGGATATTTAAAATGAGTATCAGTAAAGC
7178964 AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
1 AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
*
7179029 TCTTTTATTTGGATATTTAAAATGAGTATCAGTAAAGT
66 TCTTTTATTTGGATATTTAAAATGAGTATCAGTAAAGC
7179067 AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
1 AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
7179132 TCTTTTATTTGGATATTTAAAATGAGTATCAGTAAAGC
66 TCTTTTATTTGGATATTTAAAATGAGTATCAGTAAAGC
7179170 AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
1 AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
7179235 TCTTTTATTTGGATATTTAAAATGAGTA
66 TCTTTTATTTGGATATTTAAAATGAGTA
7179263 AAGGAAAGGA
Statistics
Matches: 296, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 296 1.00
ACGTcount: A:0.55, C:0.03, G:0.19, T:0.23
Consensus pattern (103 bp):
AAAAAGAAAAAGAAAAAAAACAAAGAAGAAGAAATGAGAGGAATAGATAGGAAAGGAAATTATAT
TCTTTTATTTGGATATTTAAAATGAGTATCAGTAAAGC
Found at i:7180275 original size:27 final size:27
Alignment explanation
Indices: 7180240--7180354 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 27
7180230 ACAATTCATC
*
7180240 CAGATTTCGCCACAAAGGCTCTTCTTT
1 CAGAGTTCGCCACAAAGGCTCTTCTTT
* *
7180267 TAGAGTTCGCCATAAAGGCTCTTCTTT
1 CAGAGTTCGCCACAAAGGCTCTTCTTT
** * *
7180294 CAGAACTCACCACAAAGGCTTTTCTTT
1 CAGAGTTCGCCACAAAGGCTCTTCTTT
* * *
7180321 TAGAGTTCGCCACAAAGGTTTTTCTTT
1 CAGAGTTCGCCACAAAGGCTCTTCTTT
7180348 CAGAGTT
1 CAGAGTT
7180355 TATCACAAAG
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (27 bp):
CAGAGTTCGCCACAAAGGCTCTTCTTT
Found at i:7180361 original size:27 final size:27
Alignment explanation
Indices: 7180240--7180376 Score: 121
Period size: 27 Copynumber: 5.0 Consensus size: 27
7180230 ACAATTCATC
* * * *
7180240 CAGATTTCGCCACAAAGGCTCTTCTTT
1 CAGAGTTCACCACAAAGGTTTTTCTTT
* * * * *
7180267 TAGAGTTCGCCATAAAGGCTCTTCTTT
1 CAGAGTTCACCACAAAGGTTTTTCTTT
** *
7180294 CAGAACTCACCACAAAGGCTTTTCTTT
1 CAGAGTTCACCACAAAGGTTTTTCTTT
* *
7180321 TAGAGTTCGCCACAAAGGTTTTTCTTT
1 CAGAGTTCACCACAAAGGTTTTTCTTT
* *
7180348 CAGAGTTTATCACAAAGGCTTTTTCTTT
1 CAGAGTTCACCACAAAGG-TTTTTCTTT
7180376 C
1 C
7180377 CTAACATATT
Statistics
Matches: 91, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
27 81 0.89
28 10 0.11
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (27 bp):
CAGAGTTCACCACAAAGGTTTTTCTTT
Found at i:7180362 original size:54 final size:54
Alignment explanation
Indices: 7180249--7180375 Score: 173
Period size: 54 Copynumber: 2.3 Consensus size: 54
7180239 CCAGATTTCG
* *
7180249 CCACAAAGGCTCTTCTTTTAGAGTTCGCCATAAAGGCTCTTCTTTCAGAACTCA
1 CCACAAAGGCTTTTCTTTTAGAGTTCGCCACAAAGGCTCTTCTTTCAGAACTCA
* * ** *
7180303 CCACAAAGGCTTTTCTTTTAGAGTTCGCCACAAAGGTTTTTCTTTCAGAGTTTA
1 CCACAAAGGCTTTTCTTTTAGAGTTCGCCACAAAGGCTCTTCTTTCAGAACTCA
*
7180357 TCACAAAGGCTTTTTCTTT
1 CCACAAAGGC-TTTTCTTT
7180376 CCTAACATAT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
54 56 0.88
55 8 0.12
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
CCACAAAGGCTTTTCTTTTAGAGTTCGCCACAAAGGCTCTTCTTTCAGAACTCA
Found at i:7182950 original size:23 final size:23
Alignment explanation
Indices: 7182920--7182967 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
7182910 TAGATCAATT
7182920 CTTACTTAATATCCCGACTTCGG
1 CTTACTTAATATCCCGACTTCGG
*
7182943 CTTACTTAATATCCTGACTTCGG
1 CTTACTTAATATCCCGACTTCGG
7182966 CT
1 CT
7182968 ATGTGCCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (23 bp):
CTTACTTAATATCCCGACTTCGG
Found at i:7184287 original size:67 final size:67
Alignment explanation
Indices: 7184205--7184339 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
7184195 AATTTGTTTT
*
7184205 CCCTAGACTTGTTCAACTCAATTGAGTCTGAAAACCATCATCTATTTGTCATGTTCTTTTTTAGT
1 CCCTACACTTGTTCAACTCAATTGAGTCTGAAAACCATCATCTATTTGTCATGTTCTTTTTTAGT
7184270 TC
66 TC
7184272 CCCTACACTTGTTCAACTCAATTGAGTCTGAAAACCATCATCTATTTGTCATGTTCTTTTTTAGT
1 CCCTACACTTGTTCAACTCAATTGAGTCTGAAAACCATCATCTATTTGTCATGTTCTTTTTTAGT
7184337 TC
66 TC
7184339 C
1 C
7184340 AATATTTTGG
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (67 bp):
CCCTACACTTGTTCAACTCAATTGAGTCTGAAAACCATCATCTATTTGTCATGTTCTTTTTTAGT
TC
Found at i:7187519 original size:27 final size:27
Alignment explanation
Indices: 7187425--7187520 Score: 68
Period size: 27 Copynumber: 3.6 Consensus size: 27
7187415 TCGCATCAAT
* * * *
7187425 CTTGTTGACGTATACCATCTCGCTAGA
1 CTTGTTGGCATATACCATCTTGCCAGA
* * * * * *
7187452 CCTGTTAGCAGATTCTATCTTGCCTGA
1 CTTGTTGGCATATACCATCTTGCCAGA
* *
7187479 CTTGCT-GAATTATACCATCTTGCCAGA
1 CTTGTTGGCA-TATACCATCTTGCCAGA
7187506 CTTGTTGGCATATAC
1 CTTGTTGGCATATAC
7187521 TAGTTCGCCA
Statistics
Matches: 48, Mismatches: 19, Indels: 4
0.68 0.27 0.06
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
CTTGTTGGCATATACCATCTTGCCAGA
Found at i:7191351 original size:27 final size:27
Alignment explanation
Indices: 7191320--7191373 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
7191310 TATAAGTGTA
7191320 AGAATTATTTCCTATATTTATTATCTT
1 AGAATTATTTCCTATATTTATTATCTT
7191347 AGAATTATTTCCTATATTTATTATCTT
1 AGAATTATTTCCTATATTTATTATCTT
7191374 GTTTTGTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.56
Consensus pattern (27 bp):
AGAATTATTTCCTATATTTATTATCTT
Found at i:7192477 original size:59 final size:60
Alignment explanation
Indices: 7192334--7192498 Score: 183
Period size: 59 Copynumber: 2.7 Consensus size: 60
7192324 TATTATTTTT
* * * *
7192334 CTAATATTATATATTTTTATTTTTATT-AATTCATATTTTAATAATAATTATATTAAGAATGTTA
1 CTAA-ATTATATA-TTAT-TTTTTATTAAATT-ATA-TTTAATAATAATAATATTAAGAATATGA
* *
7192398 CTAAATTATATATTATTTTTTATTAAATTGTATTTCATAATAATAATATTAA-AATATGA
1 CTAAATTATATATTATTTTTTATTAAATTATATTTAATAATAATAATATTAAGAATATGA
* *
7192457 TTAAATTACT-TATTATTTTTTATTAAGTTATATTTAATAATA
1 CTAAATTA-TATATTATTTTTTATTAAATTATATTTAATAATA
7192499 TTCCTATTAA
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
59 41 0.46
60 19 0.21
61 10 0.11
62 7 0.08
63 8 0.09
64 4 0.04
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (60 bp):
CTAAATTATATATTATTTTTTATTAAATTATATTTAATAATAATAATATTAAGAATATGA
Found at i:7193739 original size:12 final size:12
Alignment explanation
Indices: 7193722--7193754 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7193712 AATGTGTCAT
7193722 ACACGGCCTACC
1 ACACGGCCTACC
7193734 ACACGGCCTACC
1 ACACGGCCTACC
*
7193746 ACATGGCCT
1 ACACGGCCT
7193755 GGCACACGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.45, G:0.18, T:0.12
Consensus pattern (12 bp):
ACACGGCCTACC
Found at i:7195677 original size:21 final size:20
Alignment explanation
Indices: 7195652--7195701 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
7195642 GTTTAGCGAG
*
7195652 CCTCATAGACCTTACAATGT
1 CCTCATAGACCTCACAATGT
**
7195672 ACCTCACGGACCTCACAATGT
1 -CCTCATAGACCTCACAATGT
7195693 CCTCATAGA
1 CCTCATAGA
7195702 GAGCTTGACA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.30, C:0.34, G:0.12, T:0.24
Consensus pattern (20 bp):
CCTCATAGACCTCACAATGT
Found at i:7195808 original size:20 final size:20
Alignment explanation
Indices: 7195751--7195799 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
7195741 CGAACATAGA
7195751 GTTAGTTTGCAAAGCTTAGT
1 GTTAGTTTGCAAAGCTTAGT
7195771 GTTAGTTTGCAAAGCTTAGT
1 GTTAGTTTGCAAAGCTTAGT
7195791 GTTAGTTTG
1 GTTAGTTTG
7195800 TGAACCTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.08, G:0.27, T:0.43
Consensus pattern (20 bp):
GTTAGTTTGCAAAGCTTAGT
Found at i:7204587 original size:19 final size:20
Alignment explanation
Indices: 7204563--7204607 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
7204553 TACAAATTTT
7204563 TAATTTTTATATT-TAAATA
1 TAATTTTTATATTCTAAATA
* *
7204582 TAATTTATATATTCTAATTA
1 TAATTTTTATATTCTAAATA
7204602 -AATTTT
1 TAATTTT
7204608 ATAAATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATTTTTATATTCTAAATA
Found at i:7204868 original size:26 final size:26
Alignment explanation
Indices: 7204839--7204899 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
7204829 CTCAAATTTT
7204839 TCAAAAACACTTCTAAAAAACACTTC
1 TCAAAAACACTTCTAAAAAACACTTC
* * *
7204865 TCAACAACACTTTTGAAAAACACTTC
1 TCAAAAACACTTCTAAAAAACACTTC
*
7204891 CCAAAAACA
1 TCAAAAACA
7204900 ATGAAAAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.49, C:0.28, G:0.02, T:0.21
Consensus pattern (26 bp):
TCAAAAACACTTCTAAAAAACACTTC
Found at i:7204896 original size:13 final size:13
Alignment explanation
Indices: 7204839--7204899 Score: 77
Period size: 13 Copynumber: 4.7 Consensus size: 13
7204829 CTCAAATTTT
7204839 TCAAAAACACTTC
1 TCAAAAACACTTC
*
7204852 TAAAAAACACTTC
1 TCAAAAACACTTC
* *
7204865 TCAACAACACTTT
1 TCAAAAACACTTC
*
7204878 TGAAAAACACTTC
1 TCAAAAACACTTC
*
7204891 CCAAAAACA
1 TCAAAAACA
7204900 ATGAAAAACT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.49, C:0.28, G:0.02, T:0.21
Consensus pattern (13 bp):
TCAAAAACACTTC
Found at i:7207243 original size:18 final size:17
Alignment explanation
Indices: 7207222--7207256 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7207212 TAATGTAACG
7207222 TTTGTTATTATGTTTTTT
1 TTTGTTATT-TGTTTTTT
7207240 TTTGTTATTTGTTTTTT
1 TTTGTTATTTGTTTTTT
7207257 CTGATTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.80
Consensus pattern (17 bp):
TTTGTTATTTGTTTTTT
Found at i:7207831 original size:19 final size:19
Alignment explanation
Indices: 7207807--7207846 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7207797 ACAATTTAAA
*
7207807 TTATTTGAGTTCATTGATT
1 TTATTTAAGTTCATTGATT
* *
7207826 TTATTTAAGTTGATTTATT
1 TTATTTAAGTTCATTGATT
7207845 TT
1 TT
7207847 GTAACTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.12, T:0.62
Consensus pattern (19 bp):
TTATTTAAGTTCATTGATT
Found at i:7218035 original size:16 final size:16
Alignment explanation
Indices: 7218002--7218046 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
7217992 ATAAATATCT
*
7218002 TTAATTAA-TT-TAAA
1 TTAATTAATTTCTCAA
7218016 TTAATTAATTTCTCAA
1 TTAATTAATTTCTCAA
*
7218032 TTAAATAATTTCTCA
1 TTAATTAATTTCTCA
7218047 GCCCAATTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 8 0.30
15 2 0.07
16 17 0.63
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAATTAATTTCTCAA
Found at i:7220107 original size:41 final size:41
Alignment explanation
Indices: 7220073--7220166 Score: 161
Period size: 41 Copynumber: 2.3 Consensus size: 41
7220063 ACTGGCACTT
7220073 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACTGGCATCA
1 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACTGGCATCA
* * *
7220114 AGCCTGCTAGACTTAAAGTCTGAAATGTTTTACCGGCATCA
1 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACTGGCATCA
7220155 AGCCTGCTAGAC
1 AGCCTGCTAGAC
7220167 GTCTCTGGCA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCTGAAATGTTTCACTGGCATCA
Found at i:7227401 original size:41 final size:41
Alignment explanation
Indices: 7227356--7227509 Score: 254
Period size: 41 Copynumber: 3.8 Consensus size: 41
7227346 CTTAGCCAGT
* * *
7227356 TAGACATAAAGTCTAAAATGTTTCACCGGCGTCAAGCCTGC
1 TAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCCTGC
7227397 TAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCCTGC
1 TAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCCTGC
* *
7227438 TAGACGTAAAGTCTGAAATGTTTCACTGGCATCAAGCCTGC
1 TAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCCTGC
*
7227479 TAGACTTAAAGTCTGAAATGTTTCACTGGCA
1 TAGACTTAAAGTCTGAAATGTTTCACCGGCA
7227510 ATACACCTAA
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 107 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (41 bp):
TAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCCTGC
Found at i:7248812 original size:23 final size:23
Alignment explanation
Indices: 7248758--7249145 Score: 306
Period size: 23 Copynumber: 16.6 Consensus size: 23
7248748 TGCTACATAT
* *
7248758 ATGCTGCCCAATTTTGGTGA-ATAA
1 ATGCTGTCCAATTTT-GT-ATATAC
7248782 ATGCTGTCCAATTTTGTATATAC
1 ATGCTGTCCAATTTTGTATATAC
*
7248805 ATGCTGTCCAATTTTGTGTATA-
1 ATGCTGTCCAATTTTGTATATAC
* * * *
7248827 AGTGCTGCCCAAATTGGTATATAT
1 A-TGCTGTCCAATTTTGTATATAC
* * * *
7248851 ATGCTGCCCAATGTTGGTAAATAG
1 ATGCTGTCCAAT-TTTGTATATAC
7248875 ATGCTGTCCAATTTTGTATATAC
1 ATGCTGTCCAATTTTGTATATAC
* * * *
7248898 ATTCTGTCAAATTCTGTGTATA-
1 ATGCTGTCCAATTTTGTATATAC
* * *
7248920 AGTGCTGTCCAAATTGGTATATAT
1 A-TGCTGTCCAATTTTGTATATAC
* *
7248944 ATGCTGCCCAATTTTGGTGA-ATAA
1 ATGCTGTCCAATTTT-GT-ATATAC
7248968 ATGCTGTCCAATTTTGTATATAC
1 ATGCTGTCCAATTTTGTATATAC
* *
7248991 ATGCTGTCAAATTTTGTGTATA-
1 ATGCTGTCCAATTTTGTATATAC
* * *
7249013 AGTGCTGTCCAAATTGGTATATATAT
1 A-TGCTGTCC-AATT-TTGTATATAC
* *
7249039 ATGCTGCCCAATTTTGGTGA-ATAA
1 ATGCTGTCCAATTTT-GT-ATATAC
7249063 ATGCTGTCCAATTTTGTATATAC
1 ATGCTGTCCAATTTTGTATATAC
* * *
7249086 ATGTTGTCAAATTTTGTGTATA-
1 ATGCTGTCCAATTTTGTATATAC
* *
7249108 ATTGCTGTCCAAATTGGTATATAC
1 A-TGCTGTCCAATTTTGTATATAC
7249132 ATGCTG-CTCAATTT
1 ATGCTGTC-CAATTT
7249146 CTGATGTATA
Statistics
Matches: 294, Mismatches: 51, Indels: 39
0.77 0.13 0.10
Matches are distributed among these distances:
22 8 0.03
23 188 0.64
24 82 0.28
25 15 0.05
26 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.40
Consensus pattern (23 bp):
ATGCTGTCCAATTTTGTATATAC
Found at i:7248855 original size:46 final size:46
Alignment explanation
Indices: 7248758--7249168 Score: 437
Period size: 46 Copynumber: 8.8 Consensus size: 46
7248748 TGCTACATAT
* * * *
7248758 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAC
1 ATGCTGCCCAATTTT-GTGTATAAGTGCTGTCCAAATTGGTATATAC
* * *
7248805 ATGCTGTCCAATTTTGTGTATAAGTGCTGCCCAAATTGGTATATAT
1 ATGCTGCCCAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATAC
* * * *
7248851 ATGCTGCCCAATGTTG-GTAAATAGATGCTGTCCAATTTTGTATATAC
1 ATGCTGCCCAATTTTGTGTATA-AG-TGCTGTCCAAATTGGTATATAC
* * * * *
7248898 ATTCTGTCAAATTCTGTGTATAAGTGCTGTCCAAATTGGTATATAT
1 ATGCTGCCCAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATAC
* * * *
7248944 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAC
1 ATGCTGCCCAATTTT-GTGTATAAGTGCTGTCCAAATTGGTATATAC
* * *
7248991 ATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATATAT
1 ATGCTGCCCAATTTTGTGTATAAGTGCTGTCCAAATTGG--TATATAC
* * * *
7249039 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAC
1 ATGCTGCCCAATTTT-GTGTATAAGTGCTGTCCAAATTGGTATATAC
* * * *
7249086 ATGTTGTCAAATTTTGTGTATAATTGCTGTCCAAATTGGTATATAC
1 ATGCTGCCCAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATAC
* *
7249132 ATGCTGCTCAATTTCTGATGTATAAGAGCTGTCCAAA
1 ATGCTGCCCAATTT-TG-TGTATAAGTGCTGTCCAAA
7249169 CAGGGTAGAT
Statistics
Matches: 296, Mismatches: 59, Indels: 17
0.80 0.16 0.05
Matches are distributed among these distances:
45 4 0.01
46 128 0.43
47 104 0.35
48 40 0.14
49 20 0.07
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (46 bp):
ATGCTGCCCAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATAC
Found at i:7249085 original size:95 final size:93
Alignment explanation
Indices: 7248754--7249167 Score: 668
Period size: 93 Copynumber: 4.4 Consensus size: 93
7248744 NNNNTGCTAC
*
7248754 ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTT
1 ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTT
*
7248819 TGTGTATAAGTGCTGCCCAAATTGGTAT
66 TGTGTATAAGTGCTGTCCAAATTGGTAT
* * * * *
7248847 ATATATGCTGCCCAATGTTGGTAAATAGATGCTGTCCAATTTTGTATATACATTCTGTCAAATTC
1 ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTT
7248912 TGTGTATAAGTGCTGTCCAAATTGGTAT
66 TGTGTATAAGTGCTGTCCAAATTGGTAT
7248940 ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTT
1 ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTT
7249005 TGTGTATAAGTGCTGTCCAAATTGGTATAT
66 TGTGTATAAGTGCTGTCCAAATTGG--TAT
*
7249035 ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGTTGTCAAATTT
1 ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTT
*
7249100 TGTGTATAATTGCTGTCCAAATTGGTAT
66 TGTGTATAAGTGCTGTCCAAATTGGTAT
* * * *
7249128 ATACATGCTGCTCAATTTCTGATGTATAAGA-GCTGTCCAA
1 ATATATGCTGCCCAATTT-TGGTGAATAA-ATGCTGTCCAA
7249168 ACAGGGTAGA
Statistics
Matches: 299, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
93 190 0.64
94 17 0.06
95 92 0.31
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (93 bp):
ATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTT
TGTGTATAAGTGCTGTCCAAATTGGTAT
Found at i:7253026 original size:20 final size:21
Alignment explanation
Indices: 7253003--7253042 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7252993 ATTTTCTCCA
*
7253003 CAAAACTTTTACTTC-CCCCT
1 CAAAAATTTTACTTCTCCCCT
7253023 CAAAAATTTTACTTCTCCCC
1 CAAAAATTTTACTTCTCCCC
7253043 AAACCCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.35
Consensus pattern (21 bp):
CAAAAATTTTACTTCTCCCCT
Found at i:7253036 original size:74 final size:75
Alignment explanation
Indices: 7252942--7253096 Score: 226
Period size: 75 Copynumber: 2.1 Consensus size: 75
7252932 CCTTTTTATT
* * * *
7252942 TTCCCCCCCAAAATTTTACTTC-CCCCAAACCTTTAAAACATTTTTCCTTTTATTTTCT-CCACA
1 TTCCCCCCAAAAATTTTACTTCTCCCCAAACCCTCAAAACATTTTTCCTTTTACTTTCTACC-CA
7253005 AAACTTTTA-C
65 AAACTTTTACC
*
7253015 TTCCCCCTCAAAAATTTTACTTCTCCCCAAACCCTCAAAACTTTTTTCCTTTTACTTTCTACCCA
1 TTCCCCC-CAAAAATTTTACTTCTCCCCAAACCCTCAAAACATTTTTCCTTTTACTTTCTACCCA
7253080 AAACTTTTACC
65 AAACTTTTACC
7253091 TTCCCC
1 TTCCCC
7253097 AAACACCCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
73 7 0.10
74 14 0.19
75 43 0.59
76 9 0.12
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (75 bp):
TTCCCCCCAAAAATTTTACTTCTCCCCAAACCCTCAAAACATTTTTCCTTTTACTTTCTACCCAA
AACTTTTACC
Found at i:7253149 original size:52 final size:53
Alignment explanation
Indices: 7253008--7253151 Score: 170
Period size: 52 Copynumber: 2.7 Consensus size: 53
7252998 CTCCACAAAA
* *
7253008 CTTTTACTTCCCCCTCAAAAATTTTACTTCTCCCCAAACCCTCAAAACTTTTTTC
1 CTTTTACTTTCCCC-CAAAACTTTTACTTC-CCCCAAACCCTCAAAACTTTTTTC
*
7253063 CTTTTACTTTCTACCCAAAACTTTTACCTT-CCCCAAACACC-C-AAA-TTCTTTTC
1 CTTTTACTTTC-CCCCAAAACTTTTA-CTTCCCCCAAAC-CCTCAAAACTT-TTTTC
*
7253116 CTTTTATTTTCCCCCAAAACTTTTACTTCCCCCAAA
1 CTTTTACTTTCCCCCAAAACTTTTACTTCCCCCAAA
7253152 AAAATTTATT
Statistics
Matches: 79, Mismatches: 5, Indels: 13
0.81 0.05 0.13
Matches are distributed among these distances:
51 3 0.04
52 22 0.28
53 18 0.23
54 9 0.11
55 22 0.28
56 5 0.06
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (53 bp):
CTTTTACTTTCCCCCAAAACTTTTACTTCCCCCAAACCCTCAAAACTTTTTTC
Found at i:7253195 original size:54 final size:54
Alignment explanation
Indices: 7253135--7253252 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
7253125 TCCCCCAAAA
7253135 CTTTTAC-TTCCCCCAAAAAAATT-TATTTACCCACAAACCCCCAAAACCTTTTTC
1 CTTTTACTTTCCCCC-AAAAAATTATATTT-CCCACAAACCCCCAAAACCTTTTTC
* * * * *
7253189 CTTTTACTTTCTCCCTAAAACTTATATTTCCCCCAAATCCCCAAAACCTTTTTC
1 CTTTTACTTTCCCCCAAAAAATTATATTTCCCACAAACCCCCAAAACCTTTTTC
*
7253243 CTTTTGCTTT
1 CTTTTACTTT
7253253 TCCATAAAAC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
54 45 0.80
55 11 0.20
ACGTcount: A:0.27, C:0.34, G:0.01, T:0.38
Consensus pattern (54 bp):
CTTTTACTTTCCCCCAAAAAATTATATTTCCCACAAACCCCCAAAACCTTTTTC
Found at i:7253197 original size:126 final size:127
Alignment explanation
Indices: 7252958--7253279 Score: 372
Period size: 126 Copynumber: 2.5 Consensus size: 127
7252948 CCCAAAATTT
** *
7252958 TACTTCCCCCAAA-CCTTTAAAACATTTTTCCTTTTATTTTCTCCACAAAACTTTTACTTCCCCC
1 TACTTCCCCCAAATCC-CCAAAACCTTTTTCCTTTTATTTTC-CCACAAAACTTTTACTTCCCCC
* * * *
7253022 TCAAAAATTTTACTTCTCCCCAAACCCTCAAAACTTTTTTCCTTTTACTTTCTACCC-AAAACTT
64 -AAAAAAATTTACTTCTCCCCAAACCCCCAAAACCTTTTTCCTTTTACTTTCT-CCCTAAAACTT
*
7253086 T
127 A
** *
7253087 TACCTT-CCCCAAA-CACCCAAATTC-TTTTCCTTTTATTTTCCCCCAAAACTTTTACTTCCCCC
1 TA-CTTCCCCCAAATC-CCCAAAACCTTTTTCCTTTTATTTTCCCACAAAACTTTTACTTCCCCC
7253149 AAAAAAATTTA-TT-TACCCACAAACCCCCAAAACCTTTTTCCTTTTACTTTCTCCCTAAAACTT
64 AAAAAAATTTACTTCT-CCC-CAAACCCCCAAAACCTTTTTCCTTTTACTTTCTCCCTAAAACTT
7253212 A
127 A
* * *
7253213 TATTTCCCCCAAATCCCCAAAACCTTTTTCCTTTTGCTTTT-CCATAAAACTTTTACTTCCCTCC
1 TACTTCCCCCAAATCCCCAAAACCTTTTTCCTTTT-ATTTTCCCACAAAACTTTTACTTCCC-CC
7253277 AAA
64 AAA
7253280 CCCTAAAAAC
Statistics
Matches: 166, Mismatches: 17, Indels: 21
0.81 0.08 0.10
Matches are distributed among these distances:
124 1 0.01
125 10 0.06
126 63 0.38
127 50 0.30
128 25 0.15
129 13 0.08
130 4 0.02
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (127 bp):
TACTTCCCCCAAATCCCCAAAACCTTTTTCCTTTTATTTTCCCACAAAACTTTTACTTCCCCCAA
AAAAATTTACTTCTCCCCAAACCCCCAAAACCTTTTTCCTTTTACTTTCTCCCTAAAACTTA
Found at i:7253294 original size:53 final size:54
Alignment explanation
Indices: 7253168--7253282 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
7253158 TATTTACCCA
* *
7253168 CAAACCCCCAAAACCTTTTTCCTTTTACTTTCTCCCTAAAACTTATATTTCCCC
1 CAAACCCCCAAAACCTTTTTCCTTTTACTTTCTCCATAAAACTTATACTTCCCC
* * *
7253222 CAAATCCCCAAAACCTTTTTCCTTTTGCTTT-TCCATAAAACTTTTACTTCCCTC
1 CAAACCCCCAAAACCTTTTTCCTTTTACTTTCTCCATAAAACTTATACTTCCC-C
7253276 CAAACCC
1 CAAACCC
7253283 TAAAAACTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 18 0.33
54 36 0.67
ACGTcount: A:0.26, C:0.37, G:0.01, T:0.37
Consensus pattern (54 bp):
CAAACCCCCAAAACCTTTTTCCTTTTACTTTCTCCATAAAACTTATACTTCCCC
Found at i:7256852 original size:18 final size:19
Alignment explanation
Indices: 7256812--7256852 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
7256802 CCATGTTGTT
7256812 GGCCCGTGTGGTCCCACAC
1 GGCCCGTGTGGTCCCACAC
*
7256831 -GCCCGTGTGGT-CCACTC
1 GGCCCGTGTGGTCCCACAC
7256848 GGCCC
1 GGCCC
7256853 AAAATGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.07, C:0.44, G:0.32, T:0.17
Consensus pattern (19 bp):
GGCCCGTGTGGTCCCACAC
Found at i:7258581 original size:2 final size:2
Alignment explanation
Indices: 7258574--7258635 Score: 56
Period size: 2 Copynumber: 31.5 Consensus size: 2
7258564 AAAGATATGA
* * **
7258574 AT AT AT AT AT GT AT AT AT AT GT AT AT AT A- AT ACT CG A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
*
7258615 AT AT AT AT GT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
7258636 AGTTTCTGAG
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
1 2 0.04
2 45 0.94
3 1 0.02
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7265975 original size:18 final size:20
Alignment explanation
Indices: 7265952--7265991 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7265942 ATACGAGCTC
*
7265952 AAAAACAT-A-AAAATTACT
1 AAAAACATGACAAAATCACT
7265970 AAAAACATGACAAAATCACT
1 AAAAACATGACAAAATCACT
7265990 AA
1 AA
7265992 CCATGCAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 1 0.05
20 10 0.53
ACGTcount: A:0.65, C:0.15, G:0.03, T:0.17
Consensus pattern (20 bp):
AAAAACATGACAAAATCACT
Found at i:7270074 original size:11 final size:11
Alignment explanation
Indices: 7269999--7270074 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
7269989 ATTTCAAAAA
*
7269999 TAATATTATTT
1 TAATATTAATT
7270010 TAATAATTTAATAT
1 TAAT-A-TTAAT-T
*
7270024 TAAAATTAATT
1 TAATATTAATT
7270035 TAATAATT-ATCT
1 TAAT-ATTAAT-T
*
7270047 TAATAGT-ATT
1 TAATATTAATT
7270057 T--TATTAATT
1 TAATATTAATT
7270066 TAATATTAA
1 TAATATTAA
7270075 AGTGATTATC
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 20 0.38
12 14 0.27
13 5 0.10
14 4 0.08
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (11 bp):
TAATATTAATT
Found at i:7287065 original size:31 final size:31
Alignment explanation
Indices: 7287008--7287066 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
7286998 ATGTATAATC
* *
7287008 ATATATACAAATTTTAAATTTCTTCAATTAT
1 ATATATACAAACTTTAAATTTATTCAATTAT
*
7287039 ATATATA-AAACTTTAATTTTAATTCAAT
1 ATATATACAAACTTTAAATTT-ATTCAAT
7287067 ATTCCTGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (31 bp):
ATATATACAAACTTTAAATTTATTCAATTAT
Found at i:7287630 original size:2 final size:2
Alignment explanation
Indices: 7287612--7287664 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
7287602 CGTCCGTGCG
* *
7287612 CA CA TA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7287654 CA CA CA CA CA C
1 CA CA CA CA CA C
7287665 TCTCTCTCTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.47, G:0.00, T:0.04
Consensus pattern (2 bp):
CA
Found at i:7287669 original size:2 final size:2
Alignment explanation
Indices: 7287664--7287721 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
7287654 CACACACACA
7287664 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7287706 CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT
7287722 TTAGTGATTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7290615 original size:30 final size:30
Alignment explanation
Indices: 7290565--7290627 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
7290555 GTTATTTTAT
*
7290565 AATTTATCATATTTTATTATTTCACTTTCC
1 AATTTATCATATTTTATTATTTAACTTTCC
*
7290595 AATTTAGTCAT-TTTCT-TTATTTAATTTTCC
1 AATTTA-TCATATTT-TATTATTTAACTTTCC
7290625 AAT
1 AAT
7290628 GATGACTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.27, C:0.14, G:0.02, T:0.57
Consensus pattern (30 bp):
AATTTATCATATTTTATTATTTAACTTTCC
Found at i:7297358 original size:24 final size:25
Alignment explanation
Indices: 7297331--7297377 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
7297321 AACGAGAAGC
* *
7297331 TCAAATAAGCT-ATATTAGGAAGGT
1 TCAAACAAGCTAATATCAGGAAGGT
*
7297355 TCAAGCAAGCTAATATCAGGAAG
1 TCAAACAAGCTAATATCAGGAAG
7297378 CTCCAGAGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 9 0.47
25 10 0.53
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (25 bp):
TCAAACAAGCTAATATCAGGAAGGT
Found at i:7301294 original size:101 final size:102
Alignment explanation
Indices: 7301173--7301357 Score: 286
Period size: 101 Copynumber: 1.8 Consensus size: 102
7301163 AAAATGATGG
* *
7301173 TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTA-CTGGAATGAT-A-GGTCGCATGTGTAG
1 TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTATC-GG-ATGATAATGATCACATGTGTAG
7301235 TACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
64 TACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
* *
7301274 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGATCACATGTGTAGTA
1 TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGATAATGATCACATGTGTAGTA
*
7301339 CTATGTGTAGGCTACTATG
66 CTATGTGCAGGCTACTATG
7301358 TGAACTGAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 33 0.43
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGATAATGATCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
Found at i:7301301 original size:51 final size:51
Alignment explanation
Indices: 7301181--7301355 Score: 212
Period size: 51 Copynumber: 3.5 Consensus size: 51
7301171 GGTCACGTGC
* * * *
7301181 GTAGTACTATGTGCAGGCTACTACGTGTACTGGA-A-TGATAGGTCGCATGT
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAAT-GATCACATGT
* * * *
7301231 GTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-TTCGATCACGTGT
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAAT-GATCACATGT
* *
7301282 GTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGATCACATGT
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAATGATCACATGT
*
7301333 GTAGTACTATGTGTAGGCTACTA
1 GTAGTACTATGTGCAGGCTACTA
7301356 TGTGAACTGA
Statistics
Matches: 107, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
50 31 0.29
51 74 0.69
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
GTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAATGATCACATGT
Found at i:7307568 original size:39 final size:39
Alignment explanation
Indices: 7307514--7307591 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
7307504 TAATTCTTTG
7307514 AGCATTTACTCAAACACTTTGTGTGCATTTGTGTGCATT
1 AGCATTTACTCAAACACTTTGTGTGCATTTGTGTGCATT
7307553 AGCATTTACTCAAACACTTTGTGTGCATTTGTGTGCATT
1 AGCATTTACTCAAACACTTTGTGTGCATTTGTGTGCATT
7307592 CTTTCTTTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (39 bp):
AGCATTTACTCAAACACTTTGTGTGCATTTGTGTGCATT
Found at i:7321678 original size:20 final size:18
Alignment explanation
Indices: 7321653--7321697 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
7321643 AAATCATTGC
7321653 AATATATGTAAAAATAATTT
1 AATATAT-TAAAAATAA-TT
* *
7321673 AATATATTAAAATTTATT
1 AATATATTAAAAATAATT
7321691 AATATAT
1 AATATAT
7321698 ATTAATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
19 7 0.30
20 7 0.30
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATATATTAAAAATAATT
Found at i:7321809 original size:14 final size:15
Alignment explanation
Indices: 7321787--7321863 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7321777 CAATCAAACA
7321787 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
7321801 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
7321816 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
7321836 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
7321850 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
7321864 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:7321828 original size:20 final size:20
Alignment explanation
Indices: 7321803--7321842 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7321793 AATATTTTCC
*
7321803 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
7321823 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
7321843 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:7321848 original size:34 final size:35
Alignment explanation
Indices: 7321791--7321857 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7321781 CAAACACCAG
*
7321791 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
7321826 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
7321858 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:7321864 original size:14 final size:14
Alignment explanation
Indices: 7321826--7321865 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7321816 ACAGAAAAGT
*
7321826 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
7321840 AAATCATTTTACGG
1 AAAACATTTTACAG
7321854 AAAACATTTTAC
1 AAAACATTTTAC
7321866 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:7324973 original size:23 final size:22
Alignment explanation
Indices: 7324930--7324973 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
7324920 AATCATAGAA
*
7324930 GATTTTTAATCTTATAAGATTT
1 GATTTTTAATCTTAGAAGATTT
*
7324952 GATTTTGTAATCTTAGATGATT
1 GATTTT-TAATCTTAGAAGATT
7324974 ATGTAAATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.52
Consensus pattern (22 bp):
GATTTTTAATCTTAGAAGATTT
Found at i:7330042 original size:27 final size:27
Alignment explanation
Indices: 7329983--7330047 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
7329973 TGTAGAAATT
* *
7329983 AATTAATTAATTAAAGTTCAAATTATT
1 AATTAATTAATTAAAGTTCAAATAATG
* *
7330010 ATTTAATTAATTAAAGTTTAAA-AATGG
1 AATTAATTAATTAAAGTTCAAATAAT-G
7330037 AATTAAATTAA
1 AATT-AATTAA
7330048 CTGATCATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.06
27 23 0.74
28 6 0.19
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.42
Consensus pattern (27 bp):
AATTAATTAATTAAAGTTCAAATAATG
Found at i:7331757 original size:19 final size:19
Alignment explanation
Indices: 7331735--7331775 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7331725 AAACATTGAG
7331735 TAAAATATAAAAAGGGTAT
1 TAAAATATAAAAAGGGTAT
7331754 TAAAATATAAAAAGGGTAT
1 TAAAATATAAAAAGGGTAT
7331773 TAA
1 TAA
7331776 TGTAATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.27
Consensus pattern (19 bp):
TAAAATATAAAAAGGGTAT
Found at i:7335901 original size:5 final size:5
Alignment explanation
Indices: 7335893--7335930 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
7335883 ATTTGTATAG
7335893 TATTA TATTA TATTA TATTA TATTA T-TTA TA-TA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
7335931 AGTAATTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:7338548 original size:99 final size:96
Alignment explanation
Indices: 7338395--7338619 Score: 274
Period size: 99 Copynumber: 2.3 Consensus size: 96
7338385 TATATCATAC
* * * *
7338395 ATTATTATAATATTTTTA-TTTAACTAAATTCTCAAGAAGTAGAGATTCCCAAGTTTATACATCA
1 ATTATTATAATATTTTTATTTTAACTAAATTATCAAGAAGGAGACATTCCCAAGTTTATACATAA
* *
7338459 TCTTGAAAACGAGATTTTTTTTT-TGTTTAGTATT
66 GCTTGAAAACAAGATTTTTTTTTCT-TTT-G-A-T
* * * *
7338493 ATTATTATACTATTTTTATTTTAACCAAATTATGAAGAAGGAGACATTCCTAAGTTTATACATAA
1 ATTATTATAATATTTTTATTTTAACTAAATTATCAAGAAGGAGACATTCCCAAGTTTATACATAA
**
7338558 GCTTGAAAGTAAGATTTTTTTTTCTTTTGAT
66 GCTTGAAAACAAGATTTTTTTTTCTTTTGAT
*
7338589 ATTATTACTAATACTTTTATTTTAACTAAAT
1 ATTATTA-TAATATTTTTATTTTAACTAAAT
7338620 ACTTTAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
96 8 0.07
97 21 0.19
98 18 0.17
99 61 0.56
100 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.09, T:0.46
Consensus pattern (96 bp):
ATTATTATAATATTTTTATTTTAACTAAATTATCAAGAAGGAGACATTCCCAAGTTTATACATAA
GCTTGAAAACAAGATTTTTTTTTCTTTTGAT
Found at i:7344948 original size:45 final size:45
Alignment explanation
Indices: 7344893--7345072 Score: 200
Period size: 45 Copynumber: 4.0 Consensus size: 45
7344883 GCTTATATGC
*
7344893 ATAAAAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATG
1 ATAAAGATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATG
* * ** * **
7344938 ATAAAGATGAGTAACATCATAGCTGAAAGATTTTATGAAATCACC
1 ATAAAGATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATG
* * * *
7344983 ATAAAGATAAGTAATACCATAGCTGAAAGAAGCTATGGCATCATG
1 ATAAAGATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATG
* * * *
7345028 ATAGAA-ATGAGTAAGACCATAACTAAAAGATGTTATGGCATCATG
1 ATA-AAGATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATG
7345073 TGAAAGTACT
Statistics
Matches: 110, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
45 108 0.98
46 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.24
Consensus pattern (45 bp):
ATAAAGATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATG
Found at i:7345026 original size:90 final size:90
Alignment explanation
Indices: 7344892--7345064 Score: 240
Period size: 90 Copynumber: 1.9 Consensus size: 90
7344882 GGCTTATATG
* * *
7344892 CATAAAAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATA-AAGATGAGTAACATC
1 CATAAAAATAAGTAAGACCATAGCTGAAAGAAGCTATGACATCATGATAGAA-ATGAGTAACACC
* * *
7344956 ATAGCTGAAAGATTTTATGAAATCAC
65 ATAACTAAAAGATGTTATGAAATCAC
* * * *
7344982 CATAAAGATAAGTAATACCATAGCTGAAAGAAGCTATGGCATCATGATAGAAATGAGTAAGACCA
1 CATAAAAATAAGTAAGACCATAGCTGAAAGAAGCTATGACATCATGATAGAAATGAGTAACACCA
7345047 TAACTAAAAGATGTTATG
66 TAACTAAAAGATGTTATG
7345065 GCATCATGTG
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
90 70 0.97
91 2 0.03
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (90 bp):
CATAAAAATAAGTAAGACCATAGCTGAAAGAAGCTATGACATCATGATAGAAATGAGTAACACCA
TAACTAAAAGATGTTATGAAATCAC
Found at i:7345295 original size:27 final size:27
Alignment explanation
Indices: 7345265--7345322 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7345255 TTAAAGATGG
* *
7345265 GATACTTTTATGGAACGTTAAACACGA
1 GATACTTTGATGGAACGTCAAACACGA
* * *
7345292 GATAGTTTGATGGGACGTCAAACACGG
1 GATACTTTGATGGAACGTCAAACACGA
7345319 GATA
1 GATA
7345323 ATCCAAGGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (27 bp):
GATACTTTGATGGAACGTCAAACACGA
Found at i:7346766 original size:15 final size:15
Alignment explanation
Indices: 7346746--7346779 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7346736 GTAAAGTCAT
7346746 GCACATAGGAAGGGA
1 GCACATAGGAAGGGA
*
7346761 GCACATAGGAAGGGG
1 GCACATAGGAAGGGA
7346776 GCAC
1 GCAC
7346780 CTTTAGGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.18, G:0.41, T:0.06
Consensus pattern (15 bp):
GCACATAGGAAGGGA
Found at i:7346874 original size:15 final size:15
Alignment explanation
Indices: 7346854--7346883 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7346844 GATAGCAAAC
7346854 TTTATTTGGAAATTT
1 TTTATTTGGAAATTT
7346869 TTTATTTGGAAATTT
1 TTTATTTGGAAATTT
7346884 CTCTCTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTATTTGGAAATTT
Found at i:7347842 original size:22 final size:21
Alignment explanation
Indices: 7347780--7347842 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 21
7347770 AGACACTACC
7347780 AATTTCCAACATCATATAACA
1 AATTTCCAACATCATATAACA
* * *
7347801 AAATCCCAAATTTATCATATAACA
1 AATTTCC-AA--CATCATATAACA
7347825 ATATTTCCAACATCATAT
1 A-ATTTCCAACATCATAT
7347843 TACTTCACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
21 5 0.16
22 9 0.28
24 14 0.44
25 4 0.12
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (21 bp):
AATTTCCAACATCATATAACA
Found at i:7355756 original size:16 final size:18
Alignment explanation
Indices: 7355729--7355761 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7355719 TAGAATTGGG
7355729 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
7355746 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
7355762 GTTAGTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:7361759 original size:5 final size:5
Alignment explanation
Indices: 7361749--7361773 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7361739 GGCTAAAAGC
7361749 ACAAA ACAAA ACAAA ACAAA ACAAA
1 ACAAA ACAAA ACAAA ACAAA ACAAA
7361774 GGGGATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
ACAAA
Found at i:7365980 original size:35 final size:35
Alignment explanation
Indices: 7365936--7366027 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
7365926 ACGATTATCG
* *
7365936 ATAGATTCTTCGGGGCGACACCGTGTAAACT-GTAC
1 ATAGGTTCTTCAGGGCGACACCGTGTAAA-TGGTAC
* * *
7365971 ATAGGTTCTTCAGGGCAACACTGTGTAAATGGTAT
1 ATAGGTTCTTCAGGGCGACACCGTGTAAATGGTAC
* *
7366006 ATAGGTCCTTCAAGGCGACACC
1 ATAGGTTCTTCAGGGCGACACC
7366028 TTGAAAGAGG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
34 1 0.02
35 46 0.98
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (35 bp):
ATAGGTTCTTCAGGGCGACACCGTGTAAATGGTAC
Found at i:7385464 original size:189 final size:189
Alignment explanation
Indices: 7385144--7385521 Score: 756
Period size: 189 Copynumber: 2.0 Consensus size: 189
7385134 TTTTCGTTGA
7385144 AAAATTTTAATGTTTCGATGCTTAATTAATTAAAAATAACTAAATCGTAAAAGATGTAAAATTTG
1 AAAATTTTAATGTTTCGATGCTTAATTAATTAAAAATAACTAAATCGTAAAAGATGTAAAATTTG
7385209 ATCACTACATGATTTGAGTGATTAAATGGATTATTGAATAAAGAAAAAAGGGACTTAAATTGTAA
66 ATCACTACATGATTTGAGTGATTAAATGGATTATTGAATAAAGAAAAAAGGGACTTAAATTGTAA
7385274 TTATACCATTCAAGGTGTTAGTGGACAATAATGAACATGAATTTGATGTTTTATTTAAT
131 TTATACCATTCAAGGTGTTAGTGGACAATAATGAACATGAATTTGATGTTTTATTTAAT
7385333 AAAATTTTAATGTTTCGATGCTTAATTAATTAAAAATAACTAAATCGTAAAAGATGTAAAATTTG
1 AAAATTTTAATGTTTCGATGCTTAATTAATTAAAAATAACTAAATCGTAAAAGATGTAAAATTTG
7385398 ATCACTACATGATTTGAGTGATTAAATGGATTATTGAATAAAGAAAAAAGGGACTTAAATTGTAA
66 ATCACTACATGATTTGAGTGATTAAATGGATTATTGAATAAAGAAAAAAGGGACTTAAATTGTAA
7385463 TTATACCATTCAAGGTGTTAGTGGACAATAATGAACATGAATTTGATGTTTTATTTAAT
131 TTATACCATTCAAGGTGTTAGTGGACAATAATGAACATGAATTTGATGTTTTATTTAAT
7385522 TATTAACTAA
Statistics
Matches: 189, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
189 189 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (189 bp):
AAAATTTTAATGTTTCGATGCTTAATTAATTAAAAATAACTAAATCGTAAAAGATGTAAAATTTG
ATCACTACATGATTTGAGTGATTAAATGGATTATTGAATAAAGAAAAAAGGGACTTAAATTGTAA
TTATACCATTCAAGGTGTTAGTGGACAATAATGAACATGAATTTGATGTTTTATTTAAT
Found at i:7397163 original size:6 final size:6
Alignment explanation
Indices: 7397152--7397176 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7397142 TCTCAGTTTA
7397152 TTCCAC TTCCAC TTCCAC TTCCAC T
1 TTCCAC TTCCAC TTCCAC TTCCAC T
7397177 GAGTCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (6 bp):
TTCCAC
Found at i:7402258 original size:23 final size:22
Alignment explanation
Indices: 7402215--7402258 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
7402205 TTCTAAGTCG
7402215 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
7402238 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
7402259 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:7402385 original size:45 final size:45
Alignment explanation
Indices: 7402306--7402391 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
7402296 AAATACTCGA
* *
7402306 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCTGG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTGG
* *
7402351 TGGAATCAGTACATTGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
7402392 TCAGTTCACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTGG
Found at i:7404991 original size:42 final size:42
Alignment explanation
Indices: 7404911--7404992 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
7404901 CGTTTTCTCT
**
7404911 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
*
7404953 ATGCCATAG-CCTATCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGTCC-AACTATGGTCTTACACA-TATGCACATAT
7404993 CACAACGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 2 0.06
42 31 0.89
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.33
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:7407689 original size:45 final size:45
Alignment explanation
Indices: 7407622--7407709 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
7407612 ACAGATACTC
* * * * *
7407622 GGTGGATTCAGCACATAGCAACCACCTTATTGATCAATGATGTCT
1 GGTGGAATCAGCACATAACAACCACATTACTAATCAATGATGTCT
*
7407667 GGTGGAATCAGCCCATAACAACCACATTACTAATCAATGATGT
1 GGTGGAATCAGCACATAACAACCACATTACTAATCAATGATGT
7407710 TCGATTCACA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (45 bp):
GGTGGAATCAGCACATAACAACCACATTACTAATCAATGATGTCT
Found at i:7407789 original size:51 final size:51
Alignment explanation
Indices: 7407720--7407906 Score: 173
Period size: 51 Copynumber: 3.7 Consensus size: 51
7407710 TCGATTCACA
* * *
7407720 TAGTAG-CTCGCACGTAGTACTACACATGTGACCATTACCATCCCGTACACG
1 TAGTAGCCT-GCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
* ***** * * *
7407771 TAGTAGCCTGCACCTAGTACTACACACGTGATTGGAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
* * * * * *
7407822 TAGTATCCTGCACATAGTACTACACATGCGACC--TATCATTCTGGTGCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCA-TCCGGTACACG
7407872 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
7407907 CACTTTCACT
Statistics
Matches: 105, Mismatches: 27, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
49 2 0.02
50 37 0.35
51 64 0.61
52 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
Found at i:7409387 original size:27 final size:27
Alignment explanation
Indices: 7409357--7409712 Score: 444
Period size: 27 Copynumber: 13.2 Consensus size: 27
7409347 GGTATAAAAT
*
7409357 TCATTCTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7409384 TCATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
7409411 TCATTTTACCTTACGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7409438 TCATTCTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
7409465 TCATTCTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
7409492 TTATTTTACCCTATGAGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7409519 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
7409546 CCATTTTATCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7409573 TCATTCTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
7409600 TCATTCTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
7409627 TCATTCTACCCTAT-GGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * ** *
7409653 TTATTTTATCCTACAGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
** *
7409680 TCATTTTACCCTACAGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7409707 TAATTT
1 TCATTT
7409713 ATCAACCTCT
Statistics
Matches: 290, Mismatches: 38, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 22 0.08
27 268 0.92
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:7414133 original size:27 final size:27
Alignment explanation
Indices: 7414103--7414458 Score: 444
Period size: 27 Copynumber: 13.2 Consensus size: 27
7414093 GGTATAAAAT
*
7414103 TCATTCTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7414130 TCATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
7414157 TCATTTTACCTTACGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7414184 TCATTCTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
7414211 TCATTCTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
7414238 TTATTTTACCCTATGAGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7414265 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
7414292 CCATTTTATCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7414319 TCATTCTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
7414346 TCATTCTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
7414373 TCATTCTACCCTAT-GGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * ** *
7414399 TTATTTTATCCTACAGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
** *
7414426 TCATTTTACCCTACAGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
7414453 TAATTT
1 TCATTT
7414459 ATCAACCTCT
Statistics
Matches: 290, Mismatches: 38, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 22 0.08
27 268 0.92
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:7432315 original size:19 final size:19
Alignment explanation
Indices: 7432288--7432336 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
7432278 CAAAAATCAC
*
7432288 TTTTCCACTTTAAAATTAAA
1 TTTT-CACTTTAAAATCAAA
*
7432308 TTTTCACTTTAAAATCAAT
1 TTTTCACTTTAAAATCAAA
7432327 TTTTCACTTT
1 TTTTCACTTT
7432337 GGCATGTGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTTCACTTTAAAATCAAA
Found at i:7433097 original size:18 final size:17
Alignment explanation
Indices: 7433057--7433100 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
7433047 ACTTGATAAT
*
7433057 AGAATAAGA-AGAAAAA
1 AGAAAAAGAGAGAAAAA
*
7433073 AGGAAAAGAGAGAAAGAA
1 AGAAAAAGAGAGAAA-AA
7433091 AGAAAAAGAG
1 AGAAAAAGAG
7433101 TTACGTATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 7 0.30
17 5 0.22
18 11 0.48
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.02
Consensus pattern (17 bp):
AGAAAAAGAGAGAAAAA
Found at i:7439870 original size:38 final size:38
Alignment explanation
Indices: 7439819--7439894 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
7439809 TCCCATGTTG
*
7439819 TTTGTGTTACTCATGACATTCGTGGCACTACAATGCAA
1 TTTGTGTTACTCATGACATTCATGGCACTACAATGCAA
* *
7439857 TTTGTGTTACTCATGAGATTCATGGCATTACAATGCAA
1 TTTGTGTTACTCATGACATTCATGGCACTACAATGCAA
7439895 CTCATGTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (38 bp):
TTTGTGTTACTCATGACATTCATGGCACTACAATGCAA
Found at i:7439903 original size:38 final size:38
Alignment explanation
Indices: 7439823--7439910 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 38
7439813 ATGTTGTTTG
* * **
7439823 TGTTACTCATGACATTCGTGGCACTACAATGCAATTTG
1 TGTTACTCATGACATTCATGGCACTACAATGCAACTCA
* *
7439861 TGTTACTCATGAGATTCATGGCATTACAATGCAACTCA
1 TGTTACTCATGACATTCATGGCACTACAATGCAACTCA
*
7439899 TGTTATTCATGA
1 TGTTACTCATGA
7439911 TATTTGTGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (38 bp):
TGTTACTCATGACATTCATGGCACTACAATGCAACTCA
Found at i:7440340 original size:7 final size:7
Alignment explanation
Indices: 7440328--7440358 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
7440318 TTTTATAAGG
7440328 TATGAAT
1 TATGAAT
7440335 TATGAAT
1 TATGAAT
7440342 TATGAAT
1 TATGAAT
7440349 TATGGAAT
1 TAT-GAAT
7440357 TA
1 TA
7440359 GAGTGGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.74
8 6 0.26
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (7 bp):
TATGAAT
Found at i:7444521 original size:11 final size:11
Alignment explanation
Indices: 7444505--7444529 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7444495 AGTTCGAGTT
7444505 ATTATATATGA
1 ATTATATATGA
7444516 ATTATATATGA
1 ATTATATATGA
7444527 ATT
1 ATT
7444530 GTGTTGGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (11 bp):
ATTATATATGA
Found at i:7450732 original size:27 final size:27
Alignment explanation
Indices: 7450694--7450753 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
7450684 TTTAAATTAT
*
7450694 TGTAGGTAAAACAAGACGCAAAAACCC
1 TGTAGGTAAAACAAGACGCAAAAACAC
7450721 TGTAGGTAAAACAAGACGCAAAAACAC
1 TGTAGGTAAAACAAGACGCAAAAACAC
7450748 TG-AGGT
1 TGTAGGT
7450754 TCGAAGCTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (27 bp):
TGTAGGTAAAACAAGACGCAAAAACAC
Found at i:7451014 original size:17 final size:17
Alignment explanation
Indices: 7450992--7451027 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7450982 AGAGGGCTGG
* *
7450992 TTCTCATTTTTTCTTTT
1 TTCTCAGTTTTACTTTT
7451009 TTCTCAGTTTTACTTTT
1 TTCTCAGTTTTACTTTT
7451026 TT
1 TT
7451028 TGTGTTGTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.08, C:0.17, G:0.03, T:0.72
Consensus pattern (17 bp):
TTCTCAGTTTTACTTTT
Found at i:7453688 original size:25 final size:25
Alignment explanation
Indices: 7453660--7453725 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
7453650 TTTAGATCAG
*
7453660 TATGCTCTCACGAGCTATAAATCGA
1 TATGCTCTCACAAGCTATAAATCGA
* *
7453685 TATGCTCTCACTAGCTATAAATCGG
1 TATGCTCTCACAAGCTATAAATCGA
7453710 TATGCTCTCACAAGCT
1 TATGCTCTCACAAGCT
7453726 GTGGAGTATC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (25 bp):
TATGCTCTCACAAGCTATAAATCGA
Found at i:7458593 original size:119 final size:118
Alignment explanation
Indices: 7458381--7458680 Score: 315
Period size: 119 Copynumber: 2.5 Consensus size: 118
7458371 TTACCACCCG
* * *
7458381 TTTTCATAGTTCGATA-TCCGAAGCTATCCCTTTCCATATTTTC-ATAGTCGAAGCCATCCCTTT
1 TTTTCATTGTT-GATAGT-CGAAGCTATCCCTTTTCATA-ATTCGATAGTCGAAGCCATCCCTTT
* * * * *
7458444 TCATAATTTGATGGTCGTCACCATCACTTTTCATTATT-GATGGTCGTCACCATCCC
63 TCATAATTTGATAGCCGTAACCATCACTTTTCATAATTCAATGGTCGTCA-CATCCC
* * *
7458500 TTTTCATAAT-TTGATAGTTGAAGCTATCCCTTTTCATAATTCGATAGCCAAAGCCATCCCTTTT
1 TTTTCAT--TGTTGATAGTCGAAGCTATCCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTT
* * * *
7458564 CATAATTTGATAGCCG-AAGTCATCCCTTTTCATAATTCAATGGTTGTCACATGCC
64 CATAATTTGATAGCCGTAA-CCATCACTTTTCATAATTCAATGGTCGTCACATCCC
* * * *
7458619 TTTTCATTGTTGATGGTCGTCA-CCATCCCTTTTCATAATTCGATAGTCGAAGCTATCCCTTT
1 TTTTCATTGTTGATAGTCG-AAGCTATCCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTT
7458681 CCATTGATAT
Statistics
Matches: 151, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
117 1 0.01
118 48 0.32
119 90 0.60
120 12 0.08
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (118 bp):
TTTTCATTGTTGATAGTCGAAGCTATCCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTTCA
TAATTTGATAGCCGTAACCATCACTTTTCATAATTCAATGGTCGTCACATCCC
Found at i:7458679 original size:30 final size:30
Alignment explanation
Indices: 7458381--7458680 Score: 222
Period size: 30 Copynumber: 10.1 Consensus size: 30
7458371 TTACCACCCG
* *
7458381 TTTTCATAGTTCGATA-TCCGAAGCTATCCC
1 TTTTCATAATTCGATAGT-CGAAGCCATCCC
* *
7458411 TTTCCATATTTTC-ATAGTCGAAGCCATCCC
1 TTTTCATA-ATTCGATAGTCGAAGCCATCCC
* * * *
7458441 TTTTCATAATTTGATGGTCGTCA-CCATCAC
1 TTTTCATAATTCGATAGTCG-AAGCCATCCC
* * *
7458471 TTTTCATTATT-GATGGTCGTCA-CCATCCC
1 TTTTCATAATTCGATAGTCG-AAGCCATCCC
* * *
7458500 TTTTCATAATTTGATAGTTGAAGCTATCCC
1 TTTTCATAATTCGATAGTCGAAGCCATCCC
* *
7458530 TTTTCATAATTCGATAGCCAAAGCCATCCC
1 TTTTCATAATTCGATAGTCGAAGCCATCCC
* * *
7458560 TTTTCATAATTTGATAGCCGAAGTCATCCC
1 TTTTCATAATTCGATAGTCGAAGCCATCCC
* * * * *
7458590 TTTTCATAATTCAATGGTTG--TCACATGCC
1 TTTTCATAATTCGATAGTCGAAGC-CATCCC
** * *
7458619 TTTTCATTGTT-GATGGTCGTCA-CCATCCC
1 TTTTCATAATTCGATAGTCG-AAGCCATCCC
*
7458648 TTTTCATAATTCGATAGTCGAAGCTATCCC
1 TTTTCATAATTCGATAGTCGAAGCCATCCC
7458678 TTT
1 TTT
7458681 CCATTGATAT
Statistics
Matches: 216, Mismatches: 42, Indels: 24
0.77 0.15 0.09
Matches are distributed among these distances:
28 6 0.03
29 59 0.27
30 146 0.68
31 5 0.02
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (30 bp):
TTTTCATAATTCGATAGTCGAAGCCATCCC
Found at i:7466081 original size:30 final size:30
Alignment explanation
Indices: 7466022--7466388 Score: 214
Period size: 30 Copynumber: 12.2 Consensus size: 30
7466012 TTACCACCCT
* * *
7466022 TTTTCATAGTTCGATAG-CTGAAGCTATCCC
1 TTTTCATATTTTGATAGTC-GAAGCCATCCC
* *
7466052 TTTCCATATTTTGATAGTCGAAGTCATCCC
1 TTTTCATATTTTGATAGTCGAAGCCATCCC
* * * *
7466082 TTTTCATAATTCGATGGTCGTCA-CCATCCC
1 TTTTCATATTTTGATAGTCG-AAGCCATCCC
* * *
7466112 TTTTCAT-TGTTGATGGTCGTCA-CCATCCC
1 TTTTCATATTTTGATAGTCG-AAGCCATCCC
* * *
7466141 TTTTCATAATTTGATAGCCGAAGCTATCCC
1 TTTTCATATTTTGATAGTCGAAGCCATCCC
* * * *
7466171 TTTTCATAATTCGATAGCCGAAGCTATCCC
1 TTTTCATATTTTGATAGTCGAAGCCATCCC
*
7466201 TTTTCATAATAATTTGATAGTTGAAGCCATCCC
1 TTTTCAT-AT--TTTGATAGTCGAAGCCATCCC
* * * * *
7466234 TTTTCATAATTCGATGGTCGTCA-TCATCCC
1 TTTTCATATTTTGATAGTCG-AAGCCATCCC
* * * *
7466264 TTTTCAT-TGTTGATGGTCGTCA-TCATCCC
1 TTTTCATATTTTGATAGTCG-AAGCCATCCC
* *
7466293 TTTT--TATTGTTGATGGTCGTCA-CCATCCC
1 TTTTCATATT-TTGATAGTCG-AAGCCATCCC
* * * **
7466322 TTTTCATAATTCGATAGCCGAAGATATCCC
1 TTTTCATATTTTGATAGTCGAAGCCATCCC
* * * *
7466352 TTTCCAAATTTTGGTAGTCGAAGCTATCCC
1 TTTTCATATTTTGATAGTCGAAGCCATCCC
7466382 TTTTCAT
1 TTTTCAT
7466389 TGGTTGATGA
Statistics
Matches: 271, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
27 1 0.00
28 1 0.00
29 74 0.27
30 163 0.60
31 7 0.03
32 1 0.00
33 24 0.09
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (30 bp):
TTTTCATATTTTGATAGTCGAAGCCATCCC
Found at i:7466171 original size:119 final size:121
Alignment explanation
Indices: 7466014--7466270 Score: 308
Period size: 119 Copynumber: 2.1 Consensus size: 121
7466004 GATAGTTGTT
* * * * *
7466014 ACCA-CCCTTTTTCATAGTTCGATAGCTGAAGCTATCCCTTTCCATATTTTGATAGTCGAAG-TC
1 ACCATCCC-TTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTCGATAGCCGAAGCT-
* * **
7466077 ATCCCTTTTC-ATAATTCGATGGTCGTCA-CCATCCCTTTTCATTGTT-GATGGTCGTC
64 ATCCCTTTTCAATAATTCGATAGTCG-AAGCCATCCCTTTTCATAATTCGATGGTCGTC
* *
7466133 ACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCGATAGCCGAAGCTAT
1 ACCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTCGATAGCCGAAGCTAT
* *
7466198 CCCTTTTCATAATAATTTGATAGTTGAAGCCATCCCTTTTCATAATTCGATGGTCGTC
66 CCCTTTTC--AATAATTCGATAGTCGAAGCCATCCCTTTTCATAATTCGATGGTCGTC
*
7466256 ATCATCCCTTTTCAT
1 ACCATCCCTTTTCAT
7466271 TGTTGATGGT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
119 60 0.51
120 4 0.03
121 1 0.01
122 28 0.24
123 24 0.21
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (121 bp):
ACCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTCGATAGCCGAAGCTAT
CCCTTTTCAATAATTCGATAGTCGAAGCCATCCCTTTTCATAATTCGATGGTCGTC
Found at i:7466220 original size:33 final size:33
Alignment explanation
Indices: 7466146--7466243 Score: 139
Period size: 33 Copynumber: 3.1 Consensus size: 33
7466136 ATCCCTTTTC
7466146 ATAATTTGATAGCCGAAGCTATCCCTTTTC---
1 ATAATTTGATAGCCGAAGCTATCCCTTTTCATA
*
7466176 ATAATTCGATAGCCGAAGCTATCCCTTTTCATA
1 ATAATTTGATAGCCGAAGCTATCCCTTTTCATA
** *
7466209 ATAATTTGATAGTTGAAGCCATCCCTTTTCATA
1 ATAATTTGATAGCCGAAGCTATCCCTTTTCATA
7466242 AT
1 AT
7466244 TCGATGGTCG
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
30 29 0.48
33 31 0.52
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (33 bp):
ATAATTTGATAGCCGAAGCTATCCCTTTTCATA
Found at i:7466263 original size:63 final size:62
Alignment explanation
Indices: 7466105--7466354 Score: 207
Period size: 59 Copynumber: 4.2 Consensus size: 62
7466095 ATGGTCGTCA
**
7466105 CCATCCCTTTTCATTGTT-GATGGTCGTCACCATCCCTTTTC--ATAATTTGATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATATAATTTGATAGCCGAAG
* * * * * **
7466164 CTATCCCTTTTCATAATTCGATAGCCG-AAGCTATCCCTTTTCATAATAATTTGATAGTTGAAG
1 CCATCCCTTTTCATAATTCGATGGTCGTCA-CCATCCCTTTTCAT-ATAATTTGATAGCCGAAG
* * * * *
7466227 CCATCCCTTTTCATAATTCGATGGTCGTCATCATCCCTTTTCAT-T--GTTGATGGTCGTCA-
1 CCATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATATAATTTGATAGCCG-AAG
* * ** *
7466286 TCATCCCTTTTTATTGTT-GATGGTCGTCACCATCCCTTTTC--ATAATTCGATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATATAATTTGATAGCCGAAG
**
7466345 ATATCCCTTT
1 CCATCCCTTT
7466355 CCAAATTTTG
Statistics
Matches: 149, Mismatches: 31, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
57 1 0.01
58 23 0.15
59 53 0.36
60 18 0.12
61 1 0.01
63 52 0.35
64 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (62 bp):
CCATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATATAATTTGATAGCCGAAG
Found at i:7466352 original size:181 final size:182
Alignment explanation
Indices: 7466034--7466388 Score: 518
Period size: 181 Copynumber: 2.0 Consensus size: 182
7466024 TTCATAGTTC
* * *
7466034 GATAGCTGAAGCTATCCCTTTCCATATTTTGATAGTCGAAGTCATCCCTTTTCATAATTCGATGG
1 GATAGCTGAAGCCATCCCTTTCCATAATTCGATAGTCGAAGTCATCCCTTTTCATAATTCGATGG
*
7466099 TCGTCACCATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAAG
66 TCGTCACCATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTTTTCATAATTCGATAGCCGAAG
* *
7466164 CTATCCCTTTTCATAA-TTCGATAGCCGAAGCTATCCCTTTTCATAATAATTT
131 ATATCCCTTTCCA-AATTTCGATAGCCGAAGCTATCCCTTTTCATAATAATTT
* * * * **
7466216 GATAGTTGAAGCCATCCCTTTTCATAATTCGATGGTCGTCA-TCATCCCTTTTCATTGTT-GATG
1 GATAGCTGAAGCCATCCCTTTCCATAATTCGATAGTCG-AAGTCATCCCTTTTCATAATTCGATG
* *
7466279 GTCGTCATCATCCCTTTTTATTGTTGATGGTCGTCACCATCCCTTTTCATAATTCGATAGCCGAA
65 GTCGTCACCATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTTTTCATAATTCGATAGCCGAA
* * *
7466344 GATATCCCTTTCCAAATTTTGGTAGTCGAAGCTATCCCTTTTCAT
130 GATATCCCTTTCCAAATTTCGATAGCCGAAGCTATCCCTTTTCAT
7466389 TGGTTGATGA
Statistics
Matches: 154, Mismatches: 17, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
180 2 0.01
181 103 0.67
182 48 0.31
183 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (182 bp):
GATAGCTGAAGCCATCCCTTTCCATAATTCGATAGTCGAAGTCATCCCTTTTCATAATTCGATGG
TCGTCACCATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTTTTCATAATTCGATAGCCGAAG
ATATCCCTTTCCAAATTTCGATAGCCGAAGCTATCCCTTTTCATAATAATTT
Found at i:7467176 original size:15 final size:17
Alignment explanation
Indices: 7467156--7467194 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
7467146 ACAATTTGTT
7467156 TTACTTTA-TT-TTTAC
1 TTACTTTATTTATTTAC
7467171 TTACTTTATTTATTTAC
1 TTACTTTATTTATTTAC
7467188 TTA-TTTA
1 TTACTTTA
7467195 ACCTTTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (17 bp):
TTACTTTATTTATTTAC
Found at i:7468222 original size:9 final size:10
Alignment explanation
Indices: 7468205--7468229 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7468195 AAATAAATTT
7468205 TTAAAAAAAA
1 TTAAAAAAAA
7468215 TTAAAAAAAA
1 TTAAAAAAAA
7468225 TTAAA
1 TTAAA
7468230 TGAATTGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAAAAAAA
Found at i:7468294 original size:11 final size:11
Alignment explanation
Indices: 7468274--7468306 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7468264 TTAAAATATT
*
7468274 ATAAACAAATA
1 ATAAATAAATA
7468285 ATAAATAAATA
1 ATAAATAAATA
7468296 AT-AATAAATA
1 ATAAATAAATA
7468306 A
1 A
7468307 AATAGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (11 bp):
ATAAATAAATA
Found at i:7468300 original size:14 final size:14
Alignment explanation
Indices: 7468281--7468307 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7468271 ATTATAAACA
7468281 AATAATAAATAAAT
1 AATAATAAATAAAT
7468295 AATAATAAATAAA
1 AATAATAAATAAA
7468308 ATAGAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAATAAATAAAT
Found at i:7469203 original size:13 final size:13
Alignment explanation
Indices: 7469187--7469211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7469177 TTTATTTTTA
7469187 TTTTTAATTAATG
1 TTTTTAATTAATG
7469200 TTTTTAATTAAT
1 TTTTTAATTAAT
7469212 AAACATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:7470568 original size:4 final size:4
Alignment explanation
Indices: 7470559--7470597 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
7470549 TTTTAAGATC
*
7470559 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTT TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
7470598 TCCTTTGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:7470877 original size:17 final size:17
Alignment explanation
Indices: 7470857--7470890 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7470847 CTTGTAAATC
*
7470857 ATTTATTTTAAATTGTT
1 ATTTATTTTAAACTGTT
7470874 ATTTATTTTAAACTGTT
1 ATTTATTTTAAACTGTT
7470891 TTGCATATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (17 bp):
ATTTATTTTAAACTGTT
Found at i:7471256 original size:34 final size:34
Alignment explanation
Indices: 7471213--7471280 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
7471203 AAATTAGTAA
7471213 AAAATAGAAATTTTTGGAAATAAAGACAATACTC
1 AAAATAGAAATTTTTGGAAATAAAGACAATACTC
*
7471247 AAAATAGAAATTTTTGGAAATAAAGGCAATACTC
1 AAAATAGAAATTTTTGGAAATAAAGACAATACTC
7471281 GATACTTGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.26
Consensus pattern (34 bp):
AAAATAGAAATTTTTGGAAATAAAGACAATACTC
Found at i:7474527 original size:17 final size:17
Alignment explanation
Indices: 7474507--7474551 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
7474497 AAAAAAAACC
7474507 AAAAACACAAAAAGAAA
1 AAAAACACAAAAAGAAA
7474524 AAAAGA-AC-AAAAGAAA
1 AAAA-ACACAAAAAGAAA
7474540 AAAAACA-AAAAA
1 AAAAACACAAAAA
7474552 CCTCTACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.04
16 17 0.68
17 6 0.24
18 1 0.04
ACGTcount: A:0.84, C:0.09, G:0.07, T:0.00
Consensus pattern (17 bp):
AAAAACACAAAAAGAAA
Found at i:7474540 original size:14 final size:14
Alignment explanation
Indices: 7474516--7474549 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 14
7474506 CAAAAACACA
7474516 AAAAGAAAAAAAGAAC
1 AAAAG-AAAAAA-AAC
7474532 AAAAGAAAAAAAAC
1 AAAAGAAAAAAAAC
7474546 AAAA
1 AAAA
7474550 AACCTCTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 6 0.33
16 5 0.28
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAC
Found at i:7475001 original size:12 final size:12
Alignment explanation
Indices: 7474997--7475037 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
7474987 AAAAAGAAAC
7474997 GAAAAGAAAAAA
1 GAAAAGAAAAAA
7475009 GAAAAGAAAAGAA
1 GAAAAGAAAA-AA
*
7475022 G-AATGAAAAAA
1 GAAAAGAAAAAA
7475033 GAAAA
1 GAAAA
7475038 AGGAGAGGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 3 0.12
12 19 0.76
13 3 0.12
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (12 bp):
GAAAAGAAAAAA
Found at i:7475029 original size:24 final size:22
Alignment explanation
Indices: 7474988--7475037 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 22
7474978 TTCACTCGAA
*
7474988 AAAAGAAACGAAAAGAAAAAAG
1 AAAAGAAAAGAAAAGAAAAAAG
7475010 AAAAGAAAAGAAGAATGAAAAAAG
1 AAAAGAAAAGAA-AA-GAAAAAAG
7475034 AAAA
1 AAAA
7475038 AGGAGAGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.44
23 2 0.08
24 12 0.48
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAGAAAAGAAAAAAG
Found at i:7475030 original size:17 final size:17
Alignment explanation
Indices: 7474985--7475021 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
7474975 TACTTCACTC
*
7474985 GAAAAAAGAAACGAAAA
1 GAAAAAAGAAAAGAAAA
7475002 GAAAAAAGAAAAGAAAA
1 GAAAAAAGAAAAGAAAA
7475019 GAA
1 GAA
7475022 GAATGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (17 bp):
GAAAAAAGAAAAGAAAA
Found at i:7483054 original size:44 final size:45
Alignment explanation
Indices: 7482989--7483347 Score: 342
Period size: 44 Copynumber: 8.2 Consensus size: 45
7482979 GTCATTAAAA
* * *
7482989 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTATATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * *
7483033 CAGATCCTGTCTTCCTATATTGGT-ATGAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * *
7483076 CAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATA-
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * * *
7483119 CAGATCTTGTCTTCCCATATTGGTGGCGGAGTAGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * * * * * *
7483163 CAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCAAAGAAAA
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* *
7483208 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * * *
7483252 CAGGTCCTGTCTTCCTATATTGTTAG-GAAGT-GAATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAG-ATCGAAGATAG
* * * * * * *
7483295 TAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
7483340 CAGATCTT
1 CAGATCTT
7483348 ATCTCTCTGA
Statistics
Matches: 261, Mismatches: 43, Indels: 21
0.80 0.13 0.06
Matches are distributed among these distances:
43 85 0.33
44 148 0.57
45 28 0.11
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
Found at i:7483281 original size:176 final size:175
Alignment explanation
Indices: 7483015--7483336 Score: 482
Period size: 176 Copynumber: 1.8 Consensus size: 175
7483005 GTATTGGCGT
* * * * * * *
7483015 GAAGTATATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTATGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCAAAGAAAACAGATCCTGTCTTCATATATTGGCATGAAGTAGATCGAAGATGCAGA
* *
7483080 TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGG
66 TCCTGTCTTCCTATATTGGTAGGAAGTGAATCGAAGATACAGATCTTGTCTTCCCATACTGGTGG
*
7483145 CGGAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGA
131 CGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGA
* * *
7483190 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCAAAGAAAACAGATCCTGTCTTCATATATTGGCATGAAGTAGATCGAAGAT-GCAG
* * **
7483255 GTCCTGTCTTCCTATATTGTTAGGAAGTGAATCGAAGATGTAGATCTTGTCTTCCCATACTGGTG
65 ATCCTGTCTTCCTATATTGGTAGGAAGTGAATCGAAGATACAGATCTTGTCTTCCCATACTGGTG
7483320 GCGAAGTAGATCGAAGA
130 GCGAAGTAGATCGAAGA
7483337 AAACAGATCT
Statistics
Matches: 129, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
175 50 0.39
176 79 0.61
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (175 bp):
GAAGTAGATCAAAGAAAACAGATCCTGTCTTCATATATTGGCATGAAGTAGATCGAAGATGCAGA
TCCTGTCTTCCTATATTGGTAGGAAGTGAATCGAAGATACAGATCTTGTCTTCCCATACTGGTGG
CGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGA
Found at i:7483289 original size:132 final size:132
Alignment explanation
Indices: 7483015--7483347 Score: 390
Period size: 132 Copynumber: 2.5 Consensus size: 132
7483005 GTATTGGCGT
* * * * * **
7483015 GAAGTATATCGAAGATAGCAGATCCTGTCTTCCTATATTGGT--ATGAAGTGGATCGAAG-ATGC
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGA-GAAGTAGATCGAAGAAAAC
* * * *
7483077 AGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATATTGG
64 AGATCTTGTCTTCATATATTGGTAGGAAGTAGATCGAAGATACAGATCCTGTCTTCCCATATTGG
*
7483142 TGGC
129 TAGC
* *
7483146 GGAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCAAAGAAAACAG
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAACAG
* * * * *
7483211 ATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGT
66 ATCTTGTCTTCATATATTGGTAG-GAAGTAGATCGAAGATA-CAGATCCTGTCTTCCCATATTGG
7483275 TAG-
129 TAGC
* *
7483278 GAAGT-GAATCGAAGATGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACA
1 GAAGTAG-ATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAACA
7483342 GATCTT
65 GATCTT
7483348 ATCTCTCTGA
Statistics
Matches: 173, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
130 22 0.13
131 28 0.16
132 102 0.59
133 21 0.12
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAACAG
ATCTTGTCTTCATATATTGGTAGGAAGTAGATCGAAGATACAGATCCTGTCTTCCCATATTGGTA
GC
Found at i:7483566 original size:50 final size:49
Alignment explanation
Indices: 7483412--7483573 Score: 144
Period size: 50 Copynumber: 3.3 Consensus size: 49
7483402 TGCAATAGAG
* * * * * *
7483412 AAGATTAAAGATACGACGGTGAATCTTGTTCCCCGACATTGCAATTAAA
1 AAGATTGAAGCTACAACGGCGAATCTAGTTCCCCGACATTGCAGTTAAA
** * * * * * **
7483461 AAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAGTACAGTGGAA
1 AAGATTGAAGCTACAACGGCGAATC-TAGTTCCCCGACATTGCAGTTAAA
* **
7483511 CAGATTGAAGCTACAACGGCGAATCCGGTTCCCCGACATTGCAGTTTAAA
1 AAGATTGAAGCTACAACGGCGAATCTAGTTCCCCGACATTGCAG-TTAAA
7483561 AAGATTGAAGCTA
1 AAGATTGAAGCTA
7483574 TACATCACAG
Statistics
Matches: 83, Mismatches: 28, Indels: 3
0.73 0.25 0.03
Matches are distributed among these distances:
49 31 0.37
50 52 0.63
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (49 bp):
AAGATTGAAGCTACAACGGCGAATCTAGTTCCCCGACATTGCAGTTAAA
Found at i:7483720 original size:82 final size:82
Alignment explanation
Indices: 7483579--7484023 Score: 746
Period size: 82 Copynumber: 5.4 Consensus size: 82
7483569 AGCTATACAT
* * *
7483579 CACAGATCATATCTCCCTTAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTTCCTAAGCAGT
1 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGT
*
7483644 AGTGGAGTAGACAGAAC
66 AGTGGAGCAGACAGAAC
* *
7483661 AACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGT
1 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGT
*
7483726 AGTGGAGCAGACACAAC
66 AGTGGAGCAGACAGAAC
* *
7483743 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCCTCAAGTCTTATCTCCCTAAGCAAT
1 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGT
*
7483808 AGTGGAGAAGACAGAAC
66 AGTGGAGCAGACAGAAC
* *
7483825 AACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGT
1 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGT
*
7483890 AGTGGAGCAGACACAAC
66 AGTGGAGCAGACAGAAC
*
7483907 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCCTCAAGTCTTATCTCCCTAAGCAGT
1 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGT
7483972 AGTGGAGCAGACAGAAC
66 AGTGGAGCAGACAGAAC
* *
7483989 CACAAATCTTATCTCCCTGAGCAGTAGTGGAGCAG
1 CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
7484024 GTCGAAGATG
Statistics
Matches: 337, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 337 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (82 bp):
CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGT
AGTGGAGCAGACAGAAC
Found at i:7484134 original size:44 final size:44
Alignment explanation
Indices: 7484086--7484534 Score: 168
Period size: 44 Copynumber: 10.2 Consensus size: 44
7484076 CCGATAACTC
* *
7484086 TATCTCCCTGGTTGGCAGTGGAATAGATTGAATATTATAGATCT
1 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
** * * ** * * *
7484130 TATCTCCCCAAG-TAGTAGTGGAGCAGATTAAAGATGGTAGATTT
1 TATCT-CCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * * * * **
7484174 TACCTCCCTGTGACT-ACAGTGGAGTACATTGAAGCCGATA-AT-T
1 TATCTCCCTG-G-TTGGCAGTGGAATAGATTGAAGATGATAGATCT
* *
7484217 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * * * * * *** *
7484262 TATCTCCCTAAG-TAGTAGTGGAACAGGTCGAAGATGGCGGATTT
1 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * * * * **
7484306 TACCTCCCTGAGATT-ACGGTGGAGTACATTGAAGCCGATA-AT-T
1 TATCTCCCTG-G-TTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * *
7484349 CTATCTCCCTGGTTGGCAATGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* ** * ** * ** *
7484394 TATCTCCCTAAG-CAGTAGTGGAGCAGATTGAAAATGGCAGATTT
1 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * * * *
7484438 TACCTCCCTGTGACT-ACAGTGGAGTACATTGAAG-TCGATA-AT-T
1 TATCTCCCTG-G-TTGGCAGTGGAATAGATTGAAGAT-GATAGATCT
* * *
7484481 CTATCTCCCTGGTTGGCAATGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
7484526 TATCTCCCT
1 TATCTCCCT
7484535 AAGCAGTAGT
Statistics
Matches: 284, Mismatches: 95, Indels: 52
0.66 0.22 0.12
Matches are distributed among these distances:
42 4 0.01
43 60 0.21
44 164 0.58
45 54 0.19
46 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
Done.