Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 25 of 185
Found at i:7484231 original size:132 final size:132
Alignment explanation
Indices: 7483994--7484948 Score: 1310
Period size: 132 Copynumber: 7.2 Consensus size: 132
7483984 AGAACCACAA
* *
7483994 ATCTTATCTCCCTGAGCAGTAGTGGAGCAGGTCGAAGATGGC-GAATTTTACCTCCCTGAGATTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAG-ATTTTACCTCCCTGAGATTA
* * * *
7484058 CGGTGAAGTACATTGAAGCCGATAACTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAATATTA
65 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA
*
7484123 TAG
130 CAG
* * ** * * *
7484126 ATCTTATCTCCCCAAGTAGTAGTGGAGCAGATTAAAGATGGTAGATTTTACCTCCCTGTGACTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGATTAC
7484191 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
7484256 AG
131 AG
* * * *
7484258 ATCTTATCTCCCTAAGTAGTAGTGGAACAGGTCGAAGATGGCGGATTTTACCTCCCTGAGATTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGATTAC
* *
7484323 GGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAATGGAATAGATTGAAGATTAC
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
7484388 AG
131 AG
* * * *
7484390 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAAATGGCAGATTTTACCTCCCTGTGACTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGATTAC
* *
7484455 AGTGGAGTACATTGAAGTCGATAATTCTATCTCCCTGGTTGGCAATGGAATAGATTGAAGATTAC
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
7484520 AG
131 AG
**
7484522 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGAGATTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGATTAC
* * * **** ** *
7484587 AATGGAGTACATTGAAGCCGGTAGTTCTATCTCCCTGGGCAACAGTAAAATAGATTAAAGATTAC
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
7484652 AG
131 AG
* * *
7484654 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCTTGAGATTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGATTAC
* * * * *
7484719 AGTAGAGTACATTGAAGCCGGTAGTTCTATCTCTCTAGGCAT--CAGTGGAATAGATTGAAGATT
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCT-GG-TTGGCAGTGGAATAGATTGAAGATT
7484782 ACAG
129 ACAG
* *
7484786 ATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGG-AGGATTTTACCTCCCTGAGATTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCA-GATTTTACCTCCCTGAGATTA
* * * * *
7484850 CAGTGGAGTATATTGAAGCCGGTAGTTCTATCTCCCTAGG-TAGCAGTGGAATAGATTGAATATT
65 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATT
7484914 ACAG
129 ACAG
** *
7484918 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA
7484949 CTAAAACCAA
Statistics
Matches: 738, Mismatches: 78, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
130 1 0.00
131 12 0.02
132 722 0.98
133 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGATTAC
AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
AG
Found at i:7484692 original size:44 final size:44
Alignment explanation
Indices: 7484500--7484825 Score: 108
Period size: 44 Copynumber: 7.4 Consensus size: 44
7484490 TGGTTGGCAA
* * *
7484500 TGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGT-AG
1 TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGCA-TCAG
* *** * * * *
7484544 TGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGAG-ATTACAA
1 TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGCA-T-CAG
* * ** ** * ** *
7484589 TGGAGTACATTGAAGCCGGTAGTTC-TATCTCCCTGGGCAACAG
1 TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGCATCAG
** * ** *
7484632 TAAAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGT-AG
1 TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGCA-TCAG
* * * * * *
7484676 TGGAGTAGATCGAAGATGGCGGATTTTACCTCCTTGAG-ATTACAG
1 TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGCA-T-CAG
* * * ** ** * * *
7484721 TAGAGTACATTGAAGCCGGTAGTTC-TATCTCTCTAGGCATCAG
1 TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGCATCAG
* * *
7484764 TGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAAT-AG
1 TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGC-ATCAG
* *
7484808 TGGAGCAGGTCGAAGATG
1 TGGAGTAGATCGAAGATG
7484826 GAGGATTTTA
Statistics
Matches: 191, Mismatches: 81, Indels: 20
0.65 0.28 0.07
Matches are distributed among these distances:
43 39 0.20
44 112 0.59
45 40 0.21
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
TGGAGTAGATCGAAGATGACAGATCTTATCTCCCTAAGCATCAG
Found at i:7486339 original size:4 final size:4
Alignment explanation
Indices: 7486330--7486369 Score: 62
Period size: 4 Copynumber: 9.8 Consensus size: 4
7486320 TTTTAAGATC
*
7486330 TTTA TTTA TTTA TTTA TTTA TTTA TTTTA TTTT TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTT
7486370 TCCTTTGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 29 0.88
5 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTA
Found at i:7486649 original size:17 final size:17
Alignment explanation
Indices: 7486629--7486662 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7486619 CTTGTAAATC
*
7486629 ATTTATTTTAAATTGTT
1 ATTTATTTTAAACTGTT
7486646 ATTTATTTTAAACTGTT
1 ATTTATTTTAAACTGTT
7486663 TTGCATATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (17 bp):
ATTTATTTTAAACTGTT
Found at i:7489778 original size:9 final size:9
Alignment explanation
Indices: 7489764--7489791 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7489754 TGAGTTTTCG
7489764 AATTCGAAT
1 AATTCGAAT
7489773 AATTCGAAT
1 AATTCGAAT
7489782 AATTCGAAT
1 AATTCGAAT
7489791 A
1 A
7489792 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7489905 original size:28 final size:29
Alignment explanation
Indices: 7489850--7489905 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
7489840 ACTTTTCCCT
*
7489850 CAAAACTTTTACTCCTTCCTACTTTCCCCC
1 CAAAACTTTTACT-CTTCCTACTCTCCCCC
7489880 CAAAACTTTTACT-TTCCT-CTCCTCCC
1 CAAAACTTTTACTCTTCCTACT-CTCCC
7489906 AACCCCCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 2 0.08
28 9 0.38
30 13 0.54
ACGTcount: A:0.20, C:0.43, G:0.00, T:0.38
Consensus pattern (29 bp):
CAAAACTTTTACTCTTCCTACTCTCCCCC
Found at i:7490041 original size:30 final size:31
Alignment explanation
Indices: 7490005--7490064 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
7489995 AAACCTTTTA
*
7490005 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
7490035 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
7490065 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:7495650 original size:27 final size:26
Alignment explanation
Indices: 7495614--7495677 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
7495604 ACACTTTTCG
* *
7495614 TATTCATTTTT-GAGTCAGTAGTTTTTT
1 TATTC-TTTTTCGAGTAAGTA-TTCTTT
*
7495641 TATTCTTTTTCGAGTAATTATTCTTT
1 TATTCTTTTTCGAGTAAGTATTCTTT
7495667 TATTCTTTTTC
1 TATTCTTTTTC
7495678 CACATCATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.64
27 12 0.36
ACGTcount: A:0.17, C:0.11, G:0.09, T:0.62
Consensus pattern (26 bp):
TATTCTTTTTCGAGTAAGTATTCTTT
Found at i:7500435 original size:88 final size:88
Alignment explanation
Indices: 7500317--7500486 Score: 250
Period size: 88 Copynumber: 1.9 Consensus size: 88
7500307 GAAACCCCAA
* * *
7500317 CCTTATCTCCCTGAGCAACAGTGGAGTAGGTTGAAAATAACAAATCTTGTCTTCCTGTATTGGCA
1 CCTTATCTCCCTGAGCAACAGTGGAGTAGGTTAAAAATAACAAATCTTGCCTTCCTGTAGTGGCA
*
7500382 GCGAAGTAGATCGAAGATACCAG
66 GCGAAGCAGATCGAAGATACCAG
* * * * * *
7500405 CCTTGTCTCTCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGCCTTCTTGTAGTGGCA
1 CCTTATCTCCCTGAGCAACAGTGGAGTAGGTTAAAAATAACAAATCTTGCCTTCCTGTAGTGGCA
7500470 GCGAAGCAGATCGAAGA
66 GCGAAGCAGATCGAAGA
7500487 CAACAGTCTT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 72 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (88 bp):
CCTTATCTCCCTGAGCAACAGTGGAGTAGGTTAAAAATAACAAATCTTGCCTTCCTGTAGTGGCA
GCGAAGCAGATCGAAGATACCAG
Found at i:7500775 original size:100 final size:100
Alignment explanation
Indices: 7500626--7501237 Score: 884
Period size: 100 Copynumber: 6.1 Consensus size: 100
7500616 ATTACAGTGG
* ** * *
7500626 AATAGATTGAAGCCGCAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCCA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * * *
7500691 CAACGGTGAATCTTATTTCCCTGACGTTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * *
7500726 AATAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGTTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
*
7500791 TGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * * *
7500826 AATAGATTGAAGGCACAACGGCGAATCTTACTTCCTTAGCAGTGTAGTGGAACAAATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * *
7500891 CGACAGCAAATCTTGTTTCCCCGACATTGTAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * * *
7500926 AATAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTAAAACTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
7500991 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
*
7501026 AATAGATTGAAGCCACAACGGTC-AATCTTACTTTCCTGGCGGTGCAGTGGAACAGATTGAAGCT
1 AATAGATTGAAGCCACAACGG-CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* *
7501090 ACGATGGCGAATCTTGTTTCCCCGACATTACAGTTA
65 ACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
*
7501126 AATAGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* *
7501191 TGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
7501226 AATAGATTGAAG
1 AATAGATTGAAG
7501238 ATGGCGAATC
Statistics
Matches: 457, Mismatches: 53, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
99 1 0.00
100 456 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:7501204 original size:50 final size:50
Alignment explanation
Indices: 7500620--7501188 Score: 402
Period size: 50 Copynumber: 11.4 Consensus size: 50
7500610 TTTGGTATTA
* * ** *
7500620 CAGTGGAATAGATTGAAGCCGCAACAACGAATCTTACTTCCTTGGCGGTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
* * * *
7500670 CAGTGGAACAGATTGAAGCCACAACGGTGAATCTTATTTCCCTGACGTTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
** * * *
7500720 CAGTTAAATAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGTGGTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
* ** ** ** * * **
7500770 TAGTGGAACAGATTGAAGTTATGACGGCGAATCTTGTTTCCCCGACATTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
** * * * * *
7500820 CAGTTAAATAGATTGAAGGCACAACGGCGAATCTTACTTCCTTAGCAGTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
* * * * * * ** * * **
7500870 TAGTGGAACAAATTGAAGCTACGACAGCAAATCTTGTTTCCCCGACATTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
* ** * * * *
7500920 TAGTTAAATAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTGGTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
* * * * * ** * * **
7500970 TAGTGGAACAGATTAAAACTACGACGGCGAATCTTGTTTCCCCGACATTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
** * *
7501020 CAGTTAAATAGATTGAAGCCACAACGGTC-AATCTTACTTTCCTGGCGGTG
1 CAGTGGAACAGATTGAAGCCACAACGG-CGAATCTTACTTCCCTGGCGGTG
* * * ** * * ** *
7501070 CAGTGGAACAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTA
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
** * *
7501120 CAGTTAAATAGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTG
1 CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
7501170 CAGTGGAACAGATTGAAGC
1 CAGTGGAACAGATTGAAGC
7501189 TATGACGGTG
Statistics
Matches: 372, Mismatches: 145, Indels: 4
0.71 0.28 0.01
Matches are distributed among these distances:
49 1 0.00
50 370 0.99
51 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (50 bp):
CAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
Found at i:7501341 original size:44 final size:43
Alignment explanation
Indices: 7501244--7501437 Score: 112
Period size: 44 Copynumber: 4.5 Consensus size: 43
7501234 GAAGATGGCG
* * * * **
7501244 AATCTTATCTCCCTGAAGATGTAGTGGAGTAGGTTGAGGCCAAT
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTAAAACC-AT
*
7501288 AATCCTATCTCCTTGAAGTTGTAGTGGAGCAGGTTAAAACC-T
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTAAAACCAT
* * * * * *
7501330 CAGATCTTATCT-CTCTGAAGTTGCAGTAGAGCAGATCACATCCA-
1 -A-ATCTTATCTCCT-TGAAGTTGTAGTGGAGCAGGTTAAAACCAT
* * * * * *
7501374 ATTC-TATCCCCCTAAAGTTGCAATGGAGC-GGATTAAAACCAT
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGG-TTAAAACCAT
7501416 AGATCTTATCT-CTCTGAAGTTG
1 A-ATCTTATCTCCT-TGAAGTTG
7501438 CAGAGAGCAG
Statistics
Matches: 112, Mismatches: 28, Indels: 20
0.70 0.17 0.12
Matches are distributed among these distances:
40 1 0.01
41 24 0.21
42 5 0.04
43 7 0.06
44 75 0.67
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTAAAACCAT
Found at i:7501536 original size:128 final size:129
Alignment explanation
Indices: 7501388--7501626 Score: 329
Period size: 129 Copynumber: 1.9 Consensus size: 129
7501378 TATCCCCCTA
* *
7501388 AAGTTGCAATGGAGCGGATTAAAACCAT-AGATCTTATCTCTCTGAAGTTGCA-GAGAGCAGATC
1 AAGTTGCAATGGAGCAGATTAAAA-CATCAGATCTTATCTCTCTGAAATTGCATGAGAGCAGATC
* * * *
7501451 GCGTATAGTCTTATCTCGCTGAAGTTGCAGTGGAGCAGACAGAAGAATCTAATCCTATCTCCTTG
65 GCGTACAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAAACAGAAGAATCTAATCCTATCTCCTTG
* * * * *
7501516 AAGTTGCATTGGAGCAGATTAAAACTTCAGATCTTATCTCTCTGAAATTGCATTAGAGTAGATTG
1 AAGTTGCAATGGAGCAGATTAAAACATCAGATCTTATCTCTCTGAAATTGCATGAGAGCAGATCG
* * *
7501581 CGTCCCGTCTTATCTCCCTGAAGTTGCAGTAGAGCAAATAGAAGAA
66 CGTACAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAAACAGAAGAA
7501627 ACCAGTCCTA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
127 2 0.02
128 45 0.47
129 48 0.51
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (129 bp):
AAGTTGCAATGGAGCAGATTAAAACATCAGATCTTATCTCTCTGAAATTGCATGAGAGCAGATCG
CGTACAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAAACAGAAGAATCTAATCCTATCTCCTTG
Found at i:7501554 original size:44 final size:44
Alignment explanation
Indices: 7501293--7501555 Score: 137
Period size: 44 Copynumber: 6.1 Consensus size: 44
7501283 CCAATAATCC
* * *
7501293 TATCTCCTTGAAGTTGTAGTGGAGCAGGTTAAAACCTCAGATCT
1 TATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACTTCAGATCT
* * * *
7501337 TATCT-CTCTGAAGTTGCAGTAGAGCAGA-TCACA-TCCA-AT-T
1 TATCTCCT-TGAAGTTGCAGTGGAGCAGATTAAAACTTCAGATCT
* * * * * *
7501377 CTATCCCCCTAAAGTTGCAATGGAGCGGATTAAAACCAT-AGATCT
1 -TATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAA-CTTCAGATCT
* **
7501422 TATCT-CTCTGAAGTTGCAG-AGAGCAGA-T--CGCGTAT-AG-TCT
1 TATCTCCT-TGAAGTTGCAGTGGAGCAGATTAAAAC-T-TCAGATCT
* * *
7501462 TATCTCGC-TGAAGTTGCAGTGGAGCAGA-CAGAAGA-ATCTA-ATCC
1 TATCTC-CTTGAAGTTGCAGTGGAGCAGATTA-AA-ACTTC-AGATCT
*
7501506 TATCTCCTTGAAGTTGCATTGGAGCAGATTAAAACTTCAGATCT
1 TATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACTTCAGATCT
7501550 TATCTC
1 TATCTC
7501556 TCTGAAATTG
Statistics
Matches: 158, Mismatches: 36, Indels: 50
0.65 0.15 0.20
Matches are distributed among these distances:
39 1 0.01
40 20 0.13
41 32 0.20
42 9 0.06
43 16 0.10
44 78 0.49
45 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (44 bp):
TATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACTTCAGATCT
Found at i:7503102 original size:16 final size:16
Alignment explanation
Indices: 7503083--7503113 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7503073 ATTATTATTA
7503083 TATTTAATTATATTTC
1 TATTTAATTATATTTC
*
7503099 TATTTACTTATATTT
1 TATTTAATTATATTT
7503114 TATATATGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTAATTATATTTC
Found at i:7506031 original size:42 final size:42
Alignment explanation
Indices: 7505972--7506055 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
7505962 ATTTGGTGTA
7505972 TTTGTATTTTTCTAAGTGTGTTTTGTGTTTGGTTTTTATAAT
1 TTTGTATTTTTCTAAGTGTGTTTTGTGTTTGGTTTTTATAAT
7506014 TTTGTA-TTTTCTTAAGTGTGTTTTGTGTTTGGTTTTTATAAT
1 TTTGTATTTTTC-TAAGTGTGTTTTGTGTTTGGTTTTTATAAT
7506056 CTAAGTGAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
41 5 0.12
42 36 0.88
ACGTcount: A:0.14, C:0.02, G:0.19, T:0.64
Consensus pattern (42 bp):
TTTGTATTTTTCTAAGTGTGTTTTGTGTTTGGTTTTTATAAT
Found at i:7515509 original size:54 final size:52
Alignment explanation
Indices: 7515408--7515515 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 52
7515398 GCGAAAGCAT
* * * *
7515408 AATGTAAGTGTTGAAGTTGTTAAGTTGTTTTTATTGAGTTGATACATATAGA
1 AATGTAAGTGTTGAAGTTGTTAAGTTGTTTTTACTAAGTCGAGACATATAGA
*
7515460 AATGTAAGTGTTGAAGTTGTGTTAAGTTGTTTTTGCTAAGTCGAGACATATAGA
1 AATGTAAGTGTTGAAG-T-TGTTAAGTTGTTTTTACTAAGTCGAGACATATAGA
7515514 AA
1 AA
7515516 CAACTTAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
52 16 0.33
53 1 0.02
54 32 0.65
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.41
Consensus pattern (52 bp):
AATGTAAGTGTTGAAGTTGTTAAGTTGTTTTTACTAAGTCGAGACATATAGA
Found at i:7516210 original size:18 final size:19
Alignment explanation
Indices: 7516169--7516212 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
7516159 ATTTATAATT
* *
7516169 TAAAAAATATTAATTACTA
1 TAAAAATTATTAATTACGA
*
7516188 CAAAAATTATTAA-TACGA
1 TAAAAATTATTAATTACGA
7516206 TAAAAAT
1 TAAAAAT
7516213 AATTTCTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (19 bp):
TAAAAATTATTAATTACGA
Found at i:7521451 original size:21 final size:21
Alignment explanation
Indices: 7521414--7521471 Score: 84
Period size: 20 Copynumber: 2.8 Consensus size: 21
7521404 TTTAAAAATA
*
7521414 TTTTAAAATACTTTTTTT-AT
1 TTTTAAAATATTTTTTTTAAT
7521434 TTTTAAAATATTTTTTTTAAT
1 TTTTAAAATATTTTTTTTAAT
7521455 TTTCTAAAAT-TTTTTTT
1 TTT-TAAAATATTTTTTT
7521472 GGTTTTTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 17 0.49
21 12 0.34
22 6 0.17
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTAAAATATTTTTTTTAAT
Found at i:7525463 original size:16 final size:16
Alignment explanation
Indices: 7525442--7525474 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7525432 GAACACATTG
7525442 ATGTTTTAGTGTGAAC
1 ATGTTTTAGTGTGAAC
7525458 ATGTTTTAGTGTGAAC
1 ATGTTTTAGTGTGAAC
7525474 A
1 A
7525475 ACTTAAGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (16 bp):
ATGTTTTAGTGTGAAC
Found at i:7528773 original size:24 final size:24
Alignment explanation
Indices: 7528746--7528791 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7528736 AACAAAAAAA
7528746 ACAACT-AACAAGAAAAATAAAAGT
1 ACAACTCAA-AAGAAAAATAAAAGT
* *
7528770 ACAATTCAAAAGAAAATTAAAA
1 ACAACTCAAAAGAAAAATAAAA
7528792 ATAAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.67, C:0.11, G:0.07, T:0.15
Consensus pattern (24 bp):
ACAACTCAAAAGAAAAATAAAAGT
Found at i:7531944 original size:27 final size:27
Alignment explanation
Indices: 7531913--7532090 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
7531903 TAAATTGTAC
7531913 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
7531940 TGCACTAAGTGTGCAAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7531966 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7531994 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7532022 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7532049 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7532076 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7532091 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7532054 original size:82 final size:81
Alignment explanation
Indices: 7531914--7532069 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7531904 AAATTGTACA
* *
7531914 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCAAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAAGTGT
7531979 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
7531995 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGAT-GCACTAAGT
*
7532059 GTGCGAGTTGA
64 GTGCGAATTGA
7532070 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7532081 original size:82 final size:81
Alignment explanation
Indices: 7531910--7532090 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
7531900 GATTAAATTG
* *
7531910 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCAAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAA
7531975 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
7531991 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGAT-GCACT
* **
7532055 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7532073 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7532091 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7544912 original size:10 final size:10
Alignment explanation
Indices: 7544897--7544921 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7544887 TTGAAATAAA
7544897 AAAATTTTAG
1 AAAATTTTAG
7544907 AAAATTTTAG
1 AAAATTTTAG
7544917 AAAAT
1 AAAAT
7544922 CCAATGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (10 bp):
AAAATTTTAG
Found at i:7546229 original size:50 final size:49
Alignment explanation
Indices: 7546175--7546294 Score: 125
Period size: 49 Copynumber: 2.4 Consensus size: 49
7546165 GAGGTCTTCC
* * *
7546175 GTAAGACCATGTCTAGGACATAGCATGGGCACCGATATGAGAAC-TCCCAT
1 GTAAGACCATGTCTGGGACATAGCATGGGCA-CGACAAGA-AACATCCCAT
* * * * * *
7546225 GTAAGACCGTATCTGGGATATGGCATTGGCAGGACAAGAAACATCCCAT
1 GTAAGACCATGTCTGGGACATAGCATGGGCACGACAAGAAACATCCCAT
*
7546274 GTAAGACCAAGTCTGGGACAT
1 GTAAGACCATGTCTGGGACAT
7546295 GGCTTTGGCA
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
48 3 0.05
49 28 0.50
50 25 0.45
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.20
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATAGCATGGGCACGACAAGAAACATCCCAT
Found at i:7551387 original size:18 final size:18
Alignment explanation
Indices: 7551343--7551392 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
7551333 CAATAAAATA
7551343 AATGTTTTGAAATTGAAT
1 AATGTTTTGAAATTGAAT
* *
7551361 AACGATTTGTAAATT-AAT
1 AATGTTTTG-AAATTGAAT
7551379 AATGTTTTGGAAAT
1 AATGTTTT-GAAAT
7551393 GAACAACACG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (18 bp):
AATGTTTTGAAATTGAAT
Found at i:7551392 original size:37 final size:36
Alignment explanation
Indices: 7551343--7551414 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
7551333 CAATAAAATA
*
7551343 AATGTTTTGAAATTGAA-TA-ACGATTTGTAAATTAAT
1 AATGTTTTGAAA-TGAACAACACGATTTG-AAATTAAT
7551379 AATGTTTTGGAAATGAACAACACGATTTGAAATTAA
1 AATGTTTT-GAAATGAACAACACGATTTGAAATTAA
7551415 CATAAAGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 12 0.38
37 12 0.38
38 8 0.25
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (36 bp):
AATGTTTTGAAATGAACAACACGATTTGAAATTAAT
Found at i:7554421 original size:17 final size:17
Alignment explanation
Indices: 7554397--7554433 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
7554387 TCTTATATTT
*
7554397 TTATTTTTAAAATATTAA
1 TTATTTTGAAAATA-TAA
7554415 TTATTTTGAAAATATAA
1 TTATTTTGAAAATATAA
7554432 TT
1 TT
7554434 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TTATTTTGAAAATATAA
Found at i:7562369 original size:12 final size:12
Alignment explanation
Indices: 7562332--7562369 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
7562322 TTATTAAACT
*
7562332 TTTATATCATTA
1 TTTATATTATTA
*
7562344 TATATATTATTA
1 TTTATATTATTA
7562356 TTTATATTATTA
1 TTTATATTATTA
7562368 TT
1 TT
7562370 AAACTTTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:7562371 original size:43 final size:42
Alignment explanation
Indices: 7562310--7562403 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 42
7562300 TTTTTATACA
*
7562310 TATTA-TTATATGTTATTAAACTTTT-ATATCATTATATATAT
1 TATTATTTATATATTATTAAACTTTTCATATCA-TATATATAT
* *
7562351 TATTATTTATATTATTATTAAACTTTTCATTTTATATATATAT
1 TATTATTTATA-TATTATTAAACTTTTCATATCATATATATAT
7562394 TACTTATTTA
1 TA-TTATTTA
7562404 GACTAATGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
41 5 0.11
42 5 0.11
43 25 0.54
44 11 0.24
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (42 bp):
TATTATTTATATATTATTAAACTTTTCATATCATATATATAT
Found at i:7562622 original size:5 final size:5
Alignment explanation
Indices: 7562612--7562636 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7562602 TGCTATTCAT
7562612 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
7562637 AAACTTGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:7571219 original size:9 final size:9
Alignment explanation
Indices: 7571205--7571235 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7571195 GTTAAACGAA
7571205 TCGAGTTAT
1 TCGAGTTAT
*
7571214 TCGAGTTAA
1 TCGAGTTAT
7571223 TCGAGTTAT
1 TCGAGTTAT
7571232 TCGA
1 TCGA
7571236 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:7571576 original size:30 final size:31
Alignment explanation
Indices: 7571528--7571587 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
7571518 AAACCTTTTA
*
7571528 TTTTGCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTGCCCCAAAACTTTTACTCCCTTCCCAC
*
7571558 TTTT-CCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTGCCCC-AAAACTTTTACTCCCTTCCCA
7571588 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 4 0.15
30 17 0.65
31 5 0.19
ACGTcount: A:0.20, C:0.38, G:0.02, T:0.40
Consensus pattern (31 bp):
TTTTGCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:7580899 original size:22 final size:20
Alignment explanation
Indices: 7580874--7580926 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
7580864 TAGATATTCT
*
7580874 TAATATTAAATTACTAAAATCA
1 TAATATTAAACTA-TAAAAT-A
7580896 TAATATATAATACTATAAAATA
1 TAATAT-TAA-ACTATAAAATA
7580918 TAAT-TTAAA
1 TAATATTAAA
7580927 ATTATTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
20 3 0.11
21 1 0.04
22 11 0.39
23 9 0.32
24 3 0.11
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (20 bp):
TAATATTAAACTATAAAATA
Found at i:7588945 original size:51 final size:51
Alignment explanation
Indices: 7588782--7588966 Score: 187
Period size: 51 Copynumber: 3.6 Consensus size: 51
7588772 GAAGTTGTTA
* * *
7588782 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGGATGAAAAT
* * * * ***
7588832 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT-AGCTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGGATGAAAAT
** ** **
7588882 CAATCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTATTGGATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGGATGAAAAT
7588934 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
7588967 TGTGAACATA
Statistics
Matches: 106, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
49 4 0.04
50 35 0.33
51 65 0.61
52 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGGATGAAAAT
Found at i:7588993 original size:102 final size:101
Alignment explanation
Indices: 7588788--7588974 Score: 277
Period size: 102 Copynumber: 1.8 Consensus size: 101
7588778 GTTAGGTCAC
* *
7588788 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTACTATG
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAAAGGTCACATGTGTAGTACTATG
* *
7588853 TGCAGGCTACTATGCGTACCGGATAGCTTCAATCAT
66 TGCAGGCTACTATGCGAACAGGATAGCTTCAATCAT
** *
7588889 GTGTGTAGTACTATGTGCAGGCTACTACGTGTA-TTGGATGAAAATGGTCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATG-AAA-GGTCACATGTGTAGTACTA
*
7588953 TGTGCAGGCTACTATGTGAACA
64 TGTGCAGGCTACTATGCGAACA
7588975 TAGTATAGGC
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
100 4 0.05
101 35 0.46
102 37 0.49
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAAAGGTCACATGTGTAGTACTATG
TGCAGGCTACTATGCGAACAGGATAGCTTCAATCAT
Found at i:7590698 original size:43 final size:43
Alignment explanation
Indices: 7590650--7591115 Score: 609
Period size: 43 Copynumber: 10.8 Consensus size: 43
7590640 TTTTCTTTAC
* * *
7590650 AACGCCGCTATAGGCCATGGTCTTTAGTGGCGCTTACCCATCA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
* *
7590693 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTACCCATCA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
* * *
7590736 AACGCTGCTATAGACCATGGTCTTTAGCGGC-TTATACCAAACA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCT-TACCCAACA
* * *
7590779 AACGCCGCTATAGACCATAGTCTTTAGCGGCGCTTATCCAACT
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
*
7590822 AACGCCGCTATAGACCATGGTCTTTCGCGGCGCTTACCCAACA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
7590865 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
7590908 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
* *
7590951 AACGCCGCTATAGACCATGGTTTTTAGCGGCGCTTACCCAATA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
* * * * ** **
7590994 AACACCGCGAAAGACAATGACCTTTAGCGGCGCTTACAGTGAA-A
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAC--CCAACA
*
7591038 AACGCCGCTATAGCCCATGGTCTTTAGCGGCGCCTT-CACC-ACA
1 AACGCCGCTATAGACCATGGTCTTTAGCGGCG-CTTAC-CCAACA
* * *
7591081 AACGCCGCTAAAG-CTCATGGTGTTTAGTGGCGCTT
1 AACGCCGCTATAGAC-CATGGTCTTTAGCGGCGCTT
7591116 TTAGAAAAAC
Statistics
Matches: 373, Mismatches: 43, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
42 6 0.02
43 334 0.90
44 28 0.08
45 5 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (43 bp):
AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTACCCAACA
Found at i:7591461 original size:21 final size:21
Alignment explanation
Indices: 7591435--7591489 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
7591425 AGCTGTTCTC
7591435 CTTCCCTCGCTGCAGCCTCTA
1 CTTCCCTCGCTGCAGCCTCTA
*
7591456 CTTCCCTCGCTGCAGCCTCTG
1 CTTCCCTCGCTGCAGCCTCTA
* *
7591477 CTTCTCTCACTGC
1 CTTCCCTCGCTGC
7591490 CGCATCTGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.07, C:0.47, G:0.15, T:0.31
Consensus pattern (21 bp):
CTTCCCTCGCTGCAGCCTCTA
Found at i:7591591 original size:87 final size:87
Alignment explanation
Indices: 7591478--7591647 Score: 238
Period size: 87 Copynumber: 2.0 Consensus size: 87
7591468 CAGCCTCTGC
*
7591478 TTCTCTCACTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTC-T-TTATACTTTCGTTGAACCT
1 TTCTCTCACTGACGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCTTAT-CTTT-GTTGAACCT
*
7591540 CAGCTTCTCTCGTTGCTGCCTTTAT
63 CAGCTTCTCTCGATGCTGCCTTTAT
* * *
7591565 TTCTCTCGCTGACGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCTTATCTTTTTTGAACCTCAG
1 TTCTCTCACTGACGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCTTATCTTTGTTGAACCTCAG
*
7591630 CTTCTCTCGATGTTGCCT
66 CTTCTCTCGATGCTGCCT
7591648 CCGCTTTAAG
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
86 1 0.01
87 64 0.86
88 5 0.07
89 4 0.05
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.42
Consensus pattern (87 bp):
TTCTCTCACTGACGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCTTATCTTTGTTGAACCTCAG
CTTCTCTCGATGCTGCCTTTAT
Found at i:7593520 original size:34 final size:33
Alignment explanation
Indices: 7593482--7593712 Score: 119
Period size: 34 Copynumber: 7.3 Consensus size: 33
7593472 AATAAGTTAT
7593482 ATAAGTTATGTATCATTTTAAAATATATATATTA
1 ATAAGTTATGTAT-ATTTTAAAATATATATATTA
* * * *
7593516 ATAAGTTATGTCGTATTATATAAGT-TATGTATTA
1 ATAAGTTATGT-ATATTTTA-AAATATATATATTA
*
7593550 AAAATGTTATG--TA--TT--AATA-AGT-TA-T-
1 ATAA-GTTATGTATATTTTAAAATATA-TATATTA
7593575 ATAAGTTATGTATCATTTTAAAATATATATATTA
1 ATAAGTTATGTAT-ATTTTAAAATATATATATTA
* * * *
7593609 ATAAGTTATGTCGTATTATATAAGT-TATGTATTA
1 ATAAGTTATGT-ATATTTTA-AAATATATATATTA
*
7593643 AAAATGTTATG--TA--TT--AATA-AGT-TA-T-
1 ATAA-GTTATGTATATTTTAAAATATA-TATATTA
7593668 ATAAGTTATGTATCATTTTAAAATATATATATTA
1 ATAAGTTATGTAT-ATTTTAAAATATATATATTA
7593702 ATAAGTTATGT
1 ATAAGTTATGT
7593713 CGTATTATAT
Statistics
Matches: 149, Mismatches: 16, Indels: 64
0.65 0.07 0.28
Matches are distributed among these distances:
24 12 0.08
25 6 0.04
26 4 0.03
27 12 0.08
28 2 0.01
29 4 0.03
30 2 0.01
31 10 0.07
32 10 0.07
33 2 0.01
34 65 0.44
35 20 0.13
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (33 bp):
ATAAGTTATGTATATTTTAAAATATATATATTA
Found at i:7593547 original size:53 final size:53
Alignment explanation
Indices: 7593478--7593733 Score: 244
Period size: 53 Copynumber: 5.3 Consensus size: 53
7593468 TATTAATAAG
7593478 TTATATAAGTTATGTATCATTTTAAAATATATATATTAATAAGTTATGTCGTA
1 TTATATAAGTTATGTATCATTTTAAAATATATATATTAATAAGTTATGTCGTA
* * *
7593531 TTATATAAGTTATG--T-A--TTAAAA-ATGT-TATGTATTAA--TA---AG--
1 TTATATAAGTTATGTATCATTTTAAAATATATATAT-TAATAAGTTATGTCGTA
7593571 TTATATAAGTTATGTATCATTTTAAAATATATATATTAATAAGTTATGTCGTA
1 TTATATAAGTTATGTATCATTTTAAAATATATATATTAATAAGTTATGTCGTA
* * *
7593624 TTATATAAGTTATG--T-A--TTAAAA-ATGT-TATGTATTAA--TA---AG--
1 TTATATAAGTTATGTATCATTTTAAAATATATATAT-TAATAAGTTATGTCGTA
7593664 TTATATAAGTTATGTATCATTTTAAAATATATATATTAATAAGTTATGTCGTA
1 TTATATAAGTTATGTATCATTTTAAAATATATATATTAATAAGTTATGTCGTA
7593717 TTATATAAGTTATGTAT
1 TTATATAAGTTATGTAT
7593734 TAAAAATGTT
Statistics
Matches: 161, Mismatches: 12, Indels: 60
0.69 0.05 0.26
Matches are distributed among these distances:
40 28 0.17
42 4 0.02
43 2 0.01
45 16 0.10
46 22 0.14
47 22 0.14
48 16 0.10
50 2 0.01
51 4 0.02
53 45 0.28
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (53 bp):
TTATATAAGTTATGTATCATTTTAAAATATATATATTAATAAGTTATGTCGTA
Found at i:7593605 original size:93 final size:93
Alignment explanation
Indices: 7593448--7593803 Score: 689
Period size: 93 Copynumber: 3.8 Consensus size: 93
7593438 AATGGCAAAG
7593448 TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
1 TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
7593513 TTAATAAGTTATGTCGTATTATATAAGT
66 TTAATAAGTTATGTCGTATTATATAAGT
7593541 TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
1 TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
7593606 TTAATAAGTTATGTCGTATTATATAAGT
66 TTAATAAGTTATGTCGTATTATATAAGT
7593634 TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
1 TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
7593699 TTAATAAGTTATGTCGTATTATATAAGT
66 TTAATAAGTTATGTCGTATTATATAAGT
*
7593727 TATGTATTAAAAATGTTATGTATTAATAAGTTATGTAAGTTATGTATCATTTT--AATATATATA
1 TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
7593790 TTAATAAGTTATGT
66 TTAATAAGTTATGT
7593804 AATGTATGTA
Statistics
Matches: 262, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
91 24 0.09
93 238 0.91
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (93 bp):
TATGTATTAAAAATGTTATGTATTAATAAGTTATATAAGTTATGTATCATTTTAAAATATATATA
TTAATAAGTTATGTCGTATTATATAAGT
Found at i:7597634 original size:73 final size:73
Alignment explanation
Indices: 7597314--7597618 Score: 538
Period size: 73 Copynumber: 4.2 Consensus size: 73
7597304 ATATCTATCA
7597314 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
1 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
7597379 GTTAAACT
66 GTTAAACT
*
7597387 TTTACGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
1 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
7597452 GTTAAACT
66 GTTAAACT
* *
7597460 TTTACGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATACAAAATGAAGTCGTTTT
1 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATA-AAAACGAAGTCGTTTT
7597525 GGTTAAACT
65 GGTTAAACT
* * * *
7597534 TTTGCGGCGTTTTTACTAGAAACGCCGCTAATACTAATAAACAGTATAAAAATGAAGTCGTTTTG
1 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
7597599 GTTAAACT
66 GTTAAACT
7597607 TTTGCGGCGTTT
1 TTTGCGGCGTTT
7597619 TTACAGTAAA
Statistics
Matches: 225, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
73 157 0.70
74 68 0.30
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (73 bp):
TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
GTTAAACT
Found at i:7597634 original size:147 final size:146
Alignment explanation
Indices: 7597314--7597618 Score: 538
Period size: 147 Copynumber: 2.1 Consensus size: 146
7597304 ATATCTATCA
7597314 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
1 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
7597379 GTTAAACTTTTACGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAG
66 GTTAAACTTTTACGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAG
7597444 TCGTTTTGGTTAAACT
131 TCGTTTTGGTTAAACT
* *
7597460 TTTACGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATACAAAATGAAGTCGTTTT
1 TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATA-AAAACGAAGTCGTTTT
* * * * *
7597525 GGTTAAACTTTTGCGGCGTTTTTACTAGAAACGCCGCTAATACTAATAAACAGTATAAAAATGAA
65 GGTTAAACTTTTACGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAA
7597590 GTCGTTTTGGTTAAACT
130 GTCGTTTTGGTTAAACT
7597607 TTTGCGGCGTTT
1 TTTGCGGCGTTT
7597619 TTACAGTAAA
Statistics
Matches: 150, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
146 47 0.31
147 103 0.69
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (146 bp):
TTTGCGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTTG
GTTAAACTTTTACGGCGTTTGTACCAGAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAG
TCGTTTTGGTTAAACT
Found at i:7598796 original size:41 final size:41
Alignment explanation
Indices: 7598707--7598800 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
7598697 GCTAGCTACA
*
7598707 AAACGCCGCTAATGCTCCAGTCTTTAGCGGCGTTTTCTAAT
1 AAACGCCGCTAATGCTCCAGTCTTTAGCGGCGTTTTCTAAG
** * * *
7598748 ATGCGCCGCTAATGCTGCGGTTTTTAGCGGCGCTTTT-TAAG
1 AAACGCCGCTAATGCTCCAGTCTTTAGCGGCG-TTTTCTAAG
7598789 AAACGCCGCTAA
1 AAACGCCGCTAA
7598801 AGAACGTATC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 40 0.91
42 4 0.09
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (41 bp):
AAACGCCGCTAATGCTCCAGTCTTTAGCGGCGTTTTCTAAG
Found at i:7598816 original size:41 final size:41
Alignment explanation
Indices: 7598771--7598964 Score: 187
Period size: 41 Copynumber: 4.7 Consensus size: 41
7598761 GCTGCGGTTT
* * *
7598771 TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGAACGTATCA
1 TTAGCGGCGCTTTGTAAAAAACGCCGCTAAAGAACGTAGCA
* *
7598812 TTAGCGGCGCTTTGTAAAAAACGCCACTAAAGACCGTAGCA
1 TTAGCGGCGCTTTGTAAAAAACGCCGCTAAAGAACGTAGCA
* * * *
7598853 TTAGCGGCGCTTTGTAAAAAACGTCGCGAAAG-ACCTGAGAA
1 TTAGCGGCGCTTTGTAAAAAACGCCGCTAAAGAACGT-AGCA
* * * * * *
7598894 TTAGCGGCACATAT-TAGAAAACGCCGCGAAAGACCGCAGCA
1 TTAGCGGCGC-TTTGTAAAAAACGCCGCTAAAGAACGTAGCA
* *
7598935 TTAGCGGCGATTATGT-AAAAGCGCCGCTAA
1 TTAGCGGCGCTT-TGTAAAAAACGCCGCTAA
7598965 GGGCCCCAAA
Statistics
Matches: 123, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
40 3 0.02
41 116 0.94
42 4 0.03
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.20
Consensus pattern (41 bp):
TTAGCGGCGCTTTGTAAAAAACGCCGCTAAAGAACGTAGCA
Found at i:7600596 original size:48 final size:48
Alignment explanation
Indices: 7600528--7600624 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
7600518 ACTAGTGGGT
*
7600528 TATGACATCATAAGGAAAGAAGACCATATCATATAAGACTGTAATTGG
1 TATGACATCATAAGGAAAGAAGACCATATCATATAAGACTGTAACTGG
** * *
7600576 TATGACATCATATTGAAAGAAGACCATATCGTGTAAGACTGTAACTGG
1 TATGACATCATAAGGAAAGAAGACCATATCATATAAGACTGTAACTGG
7600624 T
1 T
7600625 GGGTTATTGC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (48 bp):
TATGACATCATAAGGAAAGAAGACCATATCATATAAGACTGTAACTGG
Found at i:7600851 original size:29 final size:27
Alignment explanation
Indices: 7600825--7601007 Score: 118
Period size: 29 Copynumber: 6.6 Consensus size: 27
7600815 CTAGAAGGGT
*
7600825 AAGCCTTTGTGGCAAACCTGTTAAAGG
1 AAGCCTTTGTGGCAAACCTGTGAAAGG
* * * * *
7600852 ACAACCCTTGTGGAAAAACTCTGAAAAGG
1 A-AGCCTTTGTGGCAAACCTGTG-AAAGG
* * *
7600881 TAAGCCTTTGTGGCGAACCTATTAAA-G
1 -AAGCCTTTGTGGCAAACCTGTGAAAGG
* *
7600908 AATGCCTTTGTGCCAAATCTGTGAAAGG
1 AA-GCCTTTGTGGCAAACCTGTGAAAGG
* * *
7600936 ACAGCCTTTGTGGCGATCTCTGTCAAAGG
1 A-AGCCTTTGTGGCAAAC-CTGTGAAAGG
* * * *
7600965 AAAGCCTTTGTAGCAATCTCCGT-AAATG
1 -AAGCCTTTGTGGCAAAC-CTGTGAAAGG
7600993 AAGCCTTTGTGGCAA
1 AAGCCTTTGTGGCAA
7601008 TATATGAAAA
Statistics
Matches: 120, Mismatches: 28, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
26 2 0.02
27 34 0.28
28 35 0.29
29 47 0.39
30 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (27 bp):
AAGCCTTTGTGGCAAACCTGTGAAAGG
Found at i:7600954 original size:27 final size:25
Alignment explanation
Indices: 7600825--7601132 Score: 96
Period size: 27 Copynumber: 11.1 Consensus size: 25
7600815 CTAGAAGGGT
*
7600825 AAGCCTTTGTGGCAAACCTGTTAAAGG
1 AAGCCTTTGTGGC-AATCTG-TAAAGG
* * * *
7600852 ACAACCCTTGTGGAAAAACTCTGAAAAGG
1 A-AGCCTTTGTGG--CAA-TCTGTAAAGG
* *
7600881 TAAGCCTTTGTGGCGAACCTATTAAA-G
1 -AAGCCTTTGTGGC-AATCT-GTAAAGG
*
7600908 AATGCCTTTGTGCCAAATCTGTGAAAGG
1 AA-GCCTTTGTGGC-AATCTGT-AAAGG
*
7600936 ACAGCCTTTGTGGCGATCTCTGTCAAAGG
1 A-AGCCTTTGTGGC-A-ATCTGT-AAAGG
* *
7600965 AAAGCCTTTGTAGCAATCTCCGTAAATG
1 -AAGCCTTTGTGGCAATCT--GTAAAGG
* *
7600993 AAGCCTTTGTGGCAATATATGAAAAGG
1 AAGCCTTTGTGGC-A-ATCTGTAAAGG
* * **
7601020 AATGCCTTCGTGGCGCAACCTAAAGAGAGG
1 AA-GCCTTTGT-G-GCAATCTGTA-A-AGG
* * * * *
7601050 ATGCCTTGGTGTCAACTCTGGATAGG
1 AAGCCTTTGTGGCAA-TCTGTAAAGG
*
7601076 AAAGTCTTTGTGGCAATCTCTGTAAAGG
1 -AAGCCTTTGTGGCAA--TCTGTAAAGG
* *
7601104 AAGCCTTCGTGGCTATATCTGAAAAGG
1 AAGCCTTTGTGGC-A-ATCTGTAAAGG
7601131 AA
1 AA
7601133 CACCTTCGTG
Statistics
Matches: 208, Mismatches: 46, Indels: 54
0.68 0.15 0.18
Matches are distributed among these distances:
26 6 0.03
27 79 0.38
28 58 0.28
29 54 0.26
30 11 0.05
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (25 bp):
AAGCCTTTGTGGCAATCTGTAAAGG
Found at i:7601085 original size:111 final size:111
Alignment explanation
Indices: 7600960--7601202 Score: 342
Period size: 111 Copynumber: 2.2 Consensus size: 111
7600950 GATCTCTGTC
* * **
7600960 AAAGGAAAGCCTTTGTAGCAATCTCCGTAAATGAAGCCTTTGTGGCAATATATGAAAAGGAATGC
1 AAAGGAAAGCCTTTGTAGCAATCTCCGTAAAGGAAGCCTTCGTGGCAATATATGAAAAGGAACAC
7601025 CTTCGTGGCGCAACCTAAAGAGAGGATGCCTTGGTGTCAACTCTGG
66 CTTCGTGGCGCAACCTAAAGAGAGGATGCCTTGGTGTCAACTCTGG
* * * * * *
7601071 ATAGGAAAGTCTTTGTGGCAATCTCTGTAAAGGAAGCCTTCGTGGCTATATCTGAAAAGGAACAC
1 AAAGGAAAGCCTTTGTAGCAATCTCCGTAAAGGAAGCCTTCGTGGCAATATATGAAAAGGAACAC
* * * *
7601136 CTTCGTGGTGCAACCTAAGGATAGGATGCCTTGGTGTCAACTCTGT
66 CTTCGTGGCGCAACCTAAAGAGAGGATGCCTTGGTGTCAACTCTGG
* *
7601182 AAAGGAAAGCCCTTGTGGCAA
1 AAAGGAAAGCCTTTGTAGCAA
7601203 ATACAAACGA
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
111 115 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (111 bp):
AAAGGAAAGCCTTTGTAGCAATCTCCGTAAAGGAAGCCTTCGTGGCAATATATGAAAAGGAACAC
CTTCGTGGCGCAACCTAAAGAGAGGATGCCTTGGTGTCAACTCTGG
Found at i:7601139 original size:28 final size:27
Alignment explanation
Indices: 7601085--7601143 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
7601075 GAAAGTCTTT
* * *
7601085 GTGGCAATCTCTGTAAAGGAAGCCTTC
1 GTGGCAATATCTGAAAAGGAAACCTTC
*
7601112 GTGGCTATATCTGAAAAGGAACACCTTC
1 GTGGCAATATCTGAAAAGGAA-ACCTTC
7601140 GTGG
1 GTGG
7601144 TGCAACCTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (27 bp):
GTGGCAATATCTGAAAAGGAAACCTTC
Found at i:7603015 original size:20 final size:20
Alignment explanation
Indices: 7602990--7603031 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7602980 TGAATGAACA
7602990 AAGCCATATTGGCATCAACC
1 AAGCCATATTGGCATCAACC
7603010 AAGCCATATTGGCATCAACC
1 AAGCCATATTGGCATCAACC
7603030 AA
1 AA
7603032 CAAGGTATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.19
Consensus pattern (20 bp):
AAGCCATATTGGCATCAACC
Found at i:7610667 original size:20 final size:20
Alignment explanation
Indices: 7610642--7610683 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7610632 TGTATGAACA
7610642 AAGCCATATTGGCATCAACC
1 AAGCCATATTGGCATCAACC
7610662 AAGCCATATTGGCATCAACC
1 AAGCCATATTGGCATCAACC
7610682 AA
1 AA
7610684 CAAGGTATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.19
Consensus pattern (20 bp):
AAGCCATATTGGCATCAACC
Found at i:7613259 original size:17 final size:17
Alignment explanation
Indices: 7613239--7613276 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7613229 ACAGAGAAGG
7613239 AAAGAAAGAAAATAAAA
1 AAAGAAAGAAAATAAAA
* *
7613256 AAAGAAAGAAAGTAGAA
1 AAAGAAAGAAAATAAAA
7613273 AAAG
1 AAAG
7613277 CTAGGGTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (17 bp):
AAAGAAAGAAAATAAAA
Found at i:7614202 original size:37 final size:40
Alignment explanation
Indices: 7614107--7614231 Score: 105
Period size: 37 Copynumber: 3.2 Consensus size: 40
7614097 GACTTTGAGT
* * **
7614107 CGATGAGACACTGGGTGTTAATTTAGTACTTCAGATTAATT
1 CGATGAGACACTGGGTGTCAATCTA-TACTTCAGATTAAGC
* * *
7614148 CGATGAGGCACTAGGTGTCAA-CT-TACTTCAGCTT-AGC
1 CGATGAGACACTGGGTGTCAATCTATACTTCAGATTAAGC
* * * *
7614185 CGATGAGACACTGGGTGTCGATTTATTACTTCAAATT-ATC
1 CGATGAGACACTGGGTGTCAATCTA-TACTTCAGATTAAGC
7614225 CGATGAG
1 CGATGAG
7614232 GTATTGGGTG
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
37 19 0.28
38 11 0.16
40 19 0.28
41 18 0.27
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAATCTATACTTCAGATTAAGC
Found at i:7614228 original size:40 final size:39
Alignment explanation
Indices: 7614107--7614231 Score: 121
Period size: 40 Copynumber: 3.2 Consensus size: 39
7614097 GACTTTGAGT
* * *
7614107 CGATGAGACACTGGGTGTTAATTTAGTACTTCAGATTAATT
1 CGATGAGACACTGGGTG-TCATTTATTACTTCAGATT-ATC
* * * *
7614148 CGATGAGGCACTAGGTGTCA---ACTTACTTCAGCTTAGC
1 CGATGAGACACTGGGTGTCATTTA-TTACTTCAGATTATC
*
7614185 CGATGAGACACTGGGTGTCGATTTATTACTTCAAATTATC
1 CGATGAGACACTGGGTGTC-ATTTATTACTTCAGATTATC
7614225 CGATGAG
1 CGATGAG
7614232 GTATTGGGTG
Statistics
Matches: 67, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
37 19 0.28
38 11 0.16
40 21 0.31
41 16 0.24
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCATTTATTACTTCAGATTATC
Found at i:7619589 original size:17 final size:17
Alignment explanation
Indices: 7619541--7619590 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
7619531 CTATTAATTT
*
7619541 TAAAAAATTAAAAAAATA
1 TAAAATATT-AAAAAATA
*
7619559 TAAAATTTTAAAAAATA
1 TAAAATATTAAAAAATA
* *
7619576 TATAATATTGAAAAA
1 TAAAATATTAAAAAA
7619591 CTACATAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 20 0.74
18 7 0.26
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (17 bp):
TAAAATATTAAAAAATA
Found at i:7619590 original size:19 final size:17
Alignment explanation
Indices: 7619544--7619590 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
7619534 TTAATTTTAA
7619544 AAAATT-AAAAAAATAT
1 AAAATTGAAAAAAATAT
*
7619560 AAAATTTTAAAAAATATAT
1 AAAA-TTGAAAAAA-ATAT
*
7619579 AATATTGAAAAA
1 AAAATTGAAAAA
7619591 CTACATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 4 0.15
17 2 0.08
18 13 0.50
19 7 0.27
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (17 bp):
AAAATTGAAAAAAATAT
Found at i:7620576 original size:6 final size:6
Alignment explanation
Indices: 7620566--7620601 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
7620556 GGGGGGAGGG
7620566 GAAAAA -AAAAA GAAAAA GAAAAA GAAAAA GAAAAA G
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA G
7620602 GGGAGATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:7625036 original size:5 final size:5
Alignment explanation
Indices: 7625026--7625051 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7625016 TTTAGGAAAA
7625026 AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT A
7625052 TTGCAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:7625404 original size:15 final size:15
Alignment explanation
Indices: 7625384--7625412 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7625374 TCTCTTGAAG
7625384 TAATGTATAAAAAAT
1 TAATGTATAAAAAAT
7625399 TAATGTATAAAAAA
1 TAATGTATAAAAAA
7625413 GTAAAGAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (15 bp):
TAATGTATAAAAAAT
Found at i:7628861 original size:25 final size:25
Alignment explanation
Indices: 7628833--7628927 Score: 70
Period size: 25 Copynumber: 3.8 Consensus size: 25
7628823 TCCTGTACAT
7628833 GTATGCTCATACGAGCTGTGAATCG
1 GTATGCTCATACGAGCTGTGAATCG
* *
7628858 GTATGCTCACT-TGAGCTGT-AGATCA
1 GTATGCTCA-TACGAGCTGTGA-ATCG
* * * * *
7628883 GTATACTC-TCACAAGTTATAAATCG
1 GTATGCTCAT-ACGAGCTGTGAATCG
*
7628908 GTATGCTCACACGAGCTGTG
1 GTATGCTCATACGAGCTGTG
7628928 GGTCAGAACG
Statistics
Matches: 50, Mismatches: 14, Indels: 12
0.66 0.18 0.16
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 46 0.92
26 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
GTATGCTCATACGAGCTGTGAATCG
Found at i:7630452 original size:17 final size:18
Alignment explanation
Indices: 7630432--7630467 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7630422 TATTAAAATG
7630432 TTAAAAAAATAA-TTAAA
1 TTAAAAAAATAACTTAAA
*
7630449 TTAAAGAAATAACTTAAA
1 TTAAAAAAATAACTTAAA
7630467 T
1 T
7630468 AGAAGACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (18 bp):
TTAAAAAAATAACTTAAA
Found at i:7631867 original size:13 final size:13
Alignment explanation
Indices: 7631834--7631915 Score: 51
Period size: 13 Copynumber: 6.2 Consensus size: 13
7631824 TTAAACGGTA
7631834 ATATGAAATGTTT
1 ATATGAAATGTTT
*
7631847 ATACGAAATGTTT
1 ATATGAAATGTTT
* *
7631860 TTATGAAAATAG-AT
1 ATATG-AAAT-GTTT
* **
7631874 ATATGAATTGAAT
1 ATATGAAATGTTT
7631887 ATAT-AAAGTGTTT
1 ATATGAAA-TGTTT
* *
7631900 ATACGAAATATTT
1 ATATGAAATGTTT
7631913 ATA
1 ATA
7631916 GGAATATAGA
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
12 3 0.06
13 37 0.70
14 12 0.23
15 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.40
Consensus pattern (13 bp):
ATATGAAATGTTT
Found at i:7634355 original size:9 final size:9
Alignment explanation
Indices: 7634341--7634373 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
7634331 TATCTTTATC
7634341 ATTATTGTT
1 ATTATTGTT
7634350 ATTATTGTT
1 ATTATTGTT
7634359 ATTATTGTT
1 ATTATTGTT
7634368 ATTATT
1 ATTATT
7634374 ATATTGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (9 bp):
ATTATTGTT
Found at i:7639197 original size:18 final size:18
Alignment explanation
Indices: 7639174--7639214 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7639164 CAAGGCTCTT
* *
7639174 CAAGGCTGGAAGCCAATC
1 CAAGGCAGGAACCCAATC
7639192 CAAGGCAGGAACCCAATC
1 CAAGGCAGGAACCCAATC
7639210 CAAGG
1 CAAGG
7639215 GCGAACACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.37, C:0.29, G:0.27, T:0.07
Consensus pattern (18 bp):
CAAGGCAGGAACCCAATC
Found at i:7641254 original size:30 final size:31
Alignment explanation
Indices: 7641230--7641288 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7641220 GTAAATACTC
** *
7641230 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAAGATCAATAGTGTAAATATGA
7641260 AAAATTTGAAAGATCAATAGTGTAAATAT
1 AAAATTTGAAAGATCAATAGTGTAAATAT
7641289 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.49, C:0.02, G:0.19, T:0.31
Consensus pattern (31 bp):
AAAATTTGAAAGATCAATAGTGTAAATATGA
Found at i:7645879 original size:30 final size:31
Alignment explanation
Indices: 7645855--7645913 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7645845 GTAAATACTC
** *
7645855 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAAGATCAATAGTGTAAATATGA
7645885 AAAATTTGAAAGATCAATAGTGTAAATAT
1 AAAATTTGAAAGATCAATAGTGTAAATAT
7645914 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.49, C:0.02, G:0.19, T:0.31
Consensus pattern (31 bp):
AAAATTTGAAAGATCAATAGTGTAAATATGA
Found at i:7653353 original size:44 final size:44
Alignment explanation
Indices: 7653122--7653368 Score: 190
Period size: 44 Copynumber: 5.5 Consensus size: 44
7653112 ATAAACCAAT
* * * *
7653122 CTTATCTCTCTGAATTTGCAGTGGAGCAGATTGAAGACAGGCTACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT--A-A-A-GTTACAAAC
* * * **
7653171 CTTATCTTCTTGAAGTTTCAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAAC
* * * * * *
7653215 CTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGTAACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAAC
* * * * * * * **
7653259 CTTGTCCCCCTGAAGTTGTAGTGGGGCAGGTTGAAGATACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAAC
* *
7653303 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGTTACTAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTAC-AAAC
*
7653348 C-TATCTCCCTAAAGTTGCAGT
1 CTTATCTCCCTGAAGTTGCAGT
7653369 AGAGTGGATT
Statistics
Matches: 159, Mismatches: 38, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
44 126 0.79
45 4 0.03
46 1 0.01
47 1 0.01
49 27 0.17
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAAC
Found at i:7659406 original size:4 final size:4
Alignment explanation
Indices: 7659399--7659438 Score: 71
Period size: 4 Copynumber: 10.0 Consensus size: 4
7659389 ACAACCAACC
*
7659399 AACT AACT AACT AACT AACT AACT AACT AAAT AACT AACT
1 AACT AACT AACT AACT AACT AACT AACT AACT AACT AACT
7659439 CCATAACCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.25
Consensus pattern (4 bp):
AACT
Found at i:7665382 original size:28 final size:30
Alignment explanation
Indices: 7665327--7665392 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 30
7665317 TTAAATTTTC
7665327 AAATT-TTTTAAAAAATCAAAACAATTATAA
1 AAATTATTTTAAAAAAT-AAAACAATTATAA
* *
7665357 AAATTATTTTTAAAAAT-AAA-AATTATTA
1 AAATTATTTTAAAAAATAAAACAATTATAA
7665385 AAATTATT
1 AAATTATT
7665393 AAAATTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 15 0.45
29 3 0.09
30 5 0.15
31 10 0.30
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (30 bp):
AAATTATTTTAAAAAATAAAACAATTATAA
Found at i:7665872 original size:7 final size:7
Alignment explanation
Indices: 7665860--7665886 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7665850 TCTTAACTTC
7665860 AAAATTT
1 AAAATTT
7665867 AAAATTT
1 AAAATTT
7665874 AAAATTT
1 AAAATTT
7665881 AAAATT
1 AAAATT
7665887 ATTAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAAATTT
Found at i:7667982 original size:40 final size:40
Alignment explanation
Indices: 7667926--7668024 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 40
7667916 GTATAAGCAA
* * * *
7667926 GGGCATGTAAGTGCATTCAGGGGTACCGAAGTACAATTAT
1 GGGCATGTATGTGCATTCAGGAGTACCGAAGTACAAATAG
* *
7667966 TGGCATGTATGTGCATTCAGGAGTACTGAAGTACAAATAG
1 GGGCATGTATGTGCATTCAGGAGTACCGAAGTACAAATAG
**
7668006 GGGCACATATGTGCATTCA
1 GGGCATGTATGTGCATTCA
7668025 TTCAATAATT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCATGTATGTGCATTCAGGAGTACCGAAGTACAAATAG
Found at i:7673427 original size:24 final size:23
Alignment explanation
Indices: 7673395--7673441 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
7673385 CTCGCAAACC
* *
7673395 AAAAATAAACCCAATTTTATAAAT
1 AAAAATAAAACCAAATTTA-AAAT
7673419 AAAAATAAAACCAAATTTAAAAT
1 AAAAATAAAACCAAATTTAAAAT
7673442 GTCCACAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAAATAAAACCAAATTTAAAAT
Found at i:7674734 original size:27 final size:27
Alignment explanation
Indices: 7674704--7674755 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
7674694 AATATTTGGA
*
7674704 GTTTATTGTATTTTTATT-TAATTTTGT
1 GTTT-TTGTATTATTATTCTAATTTTGT
*
7674731 GTTTTTTTATTATTATTCTAATTTT
1 GTTTTTGTATTATTATTCTAATTTT
7674756 ATTTAAGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.19, C:0.02, G:0.08, T:0.71
Consensus pattern (27 bp):
GTTTTTGTATTATTATTCTAATTTTGT
Found at i:7675006 original size:13 final size:13
Alignment explanation
Indices: 7674988--7675013 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7674978 TAAATTCATT
7674988 AAATATTATTTTA
1 AAATATTATTTTA
7675001 AAATATTATTTTA
1 AAATATTATTTTA
7675014 TTTTATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AAATATTATTTTA
Found at i:7678705 original size:18 final size:19
Alignment explanation
Indices: 7678682--7678720 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
7678672 CGACGCCTCT
7678682 TTACATT-CATGCAT-TGCA
1 TTACATTGCAT-CATATGCA
7678700 TTACATTGCATCATATGCA
1 TTACATTGCATCATATGCA
7678719 TT
1 TT
7678721 CAGGTCCACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (19 bp):
TTACATTGCATCATATGCA
Found at i:7686943 original size:26 final size:26
Alignment explanation
Indices: 7686907--7686958 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
7686897 TAAACTTTGA
7686907 GTAATGACAACCTAAGTGGGATCATT
1 GTAATGACAACCTAAGTGGGATCATT
*
7686933 GTAATGACAACCTATGTGGGATCATT
1 GTAATGACAACCTAAGTGGGATCATT
7686959 CTCGGAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (26 bp):
GTAATGACAACCTAAGTGGGATCATT
Found at i:7687402 original size:85 final size:84
Alignment explanation
Indices: 7687248--7687612 Score: 305
Period size: 85 Copynumber: 4.3 Consensus size: 84
7687238 CTAGTAATCC
* *
7687248 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAGAATCTTATCTCCCTGAAGTTACAGTA
7687313 GAGCAGATCATATCAGGCCT
65 GAGCAGATCATATCAGGCCT
** * *
7687333 TATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGTAATCCTATCTCCCTG-AGATTATAG
1 TATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAG-AATCTTATCTCCCTGAAG-TTACAG
* * * * *
7687396 TGGAGCAGATTAAATAAAGGATCT
63 TAGAGCAGATCATAT-CAGG-CCT
* * *** *
7687420 TATCTCTCTGA-AGTTACAGTAGAGCAGA-TCGTATCA-AATCTTATCTCCCTG-AGATTACAGT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAGAATCTTATCTCCCTGAAG-TTACAGT
* **
7687481 GGAGCAGATCGAAGCTAGT-AATCC-
64 AGAGCAGATC--A--TA-TCAGGCCT
* * *
7687505 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAGAATCTTATCTCCCTGAAGTTACAGTA
* ** *
7687570 GAGTAGATCGCATCAGGTCT
65 GAGCAGATCATATCAGGCCT
7687590 TATCTCCCTGAGATTACAGTGGA
1 TATCTCCCTGAGATTACAGTGGA
7687613 ATAGATCGAA
Statistics
Matches: 221, Mismatches: 40, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
83 1 0.00
84 39 0.18
85 106 0.48
86 15 0.07
87 28 0.13
88 29 0.13
89 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (84 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAGAATCTTATCTCCCTGAAGTTACAGTAG
AGCAGATCATATCAGGCCT
Found at i:7687463 original size:128 final size:129
Alignment explanation
Indices: 7687228--7687612 Score: 673
Period size: 128 Copynumber: 3.0 Consensus size: 129
7687218 AGTGGTAGAA
*
7687228 CAGACTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
1 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
* *
7687293 ATCTCTCTGAAGTTACAGTAGAGCAGATCATATCAGGCCTTATCTCCCTGAGATTACAGTGGAG
66 ATCTCTCTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAG
*
7687357 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCAGATT-AAATAAAGGATCTT
1 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
**
7687421 ATCTCTCTGAAGTTACAGTAGAGCAGATCGTATCAAATCTTATCTCCCTGAGATTACAGTGGAG
66 ATCTCTCTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAG
* *
7687485 CAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTT
1 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
* *
7687550 ATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGA
66 ATCTCTCTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGA
7687613 ATAGATCGAA
Statistics
Matches: 242, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
128 121 0.50
129 121 0.50
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (129 bp):
CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
ATCTCTCTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAG
Found at i:7687619 original size:129 final size:129
Alignment explanation
Indices: 7687234--7687623 Score: 674
Period size: 129 Copynumber: 3.0 Consensus size: 129
7687224 AGAACAGACT
7687234 GAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCT
1 GAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCT
* * *
7687299 CTGAAGTTACAGTAGAGCAGATCATATCAGGCCTTATCTCCCTGAGATTACAGTGGAGCAGATT
66 CTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATC
*
7687363 GAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCAGATT-AAATAAAGGATCTTATCTCT
1 GAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCT
**
7687427 CTGAAGTTACAGTAGAGCAGATCGTATCAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATC
66 CTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATC
*
7687491 GAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCT
1 GAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCT
* * **
7687556 CTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATC
66 CTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATC
7687620 GAAG
1 GAAG
7687624 AATTACAGAT
Statistics
Matches: 246, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
128 121 0.49
129 125 0.51
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (129 bp):
GAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCT
CTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATC
Found at i:7689262 original size:27 final size:27
Alignment explanation
Indices: 7689232--7689283 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
7689222 AATATTTGGA
*
7689232 GTTTATTGTATTTTTATT-TAATTTTGT
1 GTTT-TTGTATTATTATTCTAATTTTGT
*
7689259 GTTTTTTTATTATTATTCTAATTTT
1 GTTTTTGTATTATTATTCTAATTTT
7689284 ATTTAAGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.19, C:0.02, G:0.08, T:0.71
Consensus pattern (27 bp):
GTTTTTGTATTATTATTCTAATTTTGT
Found at i:7689532 original size:13 final size:13
Alignment explanation
Indices: 7689514--7689539 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7689504 TAAATTCATT
7689514 AAATATTATTTTA
1 AAATATTATTTTA
7689527 AAATATTATTTTA
1 AAATATTATTTTA
7689540 TTTTATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AAATATTATTTTA
Found at i:7692183 original size:40 final size:40
Alignment explanation
Indices: 7692114--7692341 Score: 204
Period size: 40 Copynumber: 5.7 Consensus size: 40
7692104 GAGTTACCAG
* ** *
7692114 AGTATAAATAGGGGCACGTAAATGCATTTAGGGGAACCGA
1 AGTACAAATAGGGGCACGTATGTGCATTTAGGGGTACCGA
* * * *
7692154 AGTACAAATCGGGGCACGTATGTGTATTTAAGGGTATCGA
1 AGTACAAATAGGGGCACGTATGTGCATTTAGGGGTACCGA
* * * ** * * *
7692194 GGTACAATTAGGGGAACAAATGTGTATTCATGGGTACCGA
1 AGTACAAATAGGGGCACGTATGTGCATTTAGGGGTACCGA
* * * * *
7692234 AGTGCAAAAAGGGGCATGTATGTGCATTCAGGGGTATCGA
1 AGTACAAATAGGGGCACGTATGTGCATTTAGGGGTACCGA
* ** *
7692274 AGTATATTTAGGGGCACATATGTGCATTTAGGGGTACCGA
1 AGTACAAATAGGGGCACGTATGTGCATTTAGGGGTACCGA
* * *
7692314 AGTACAAACAGGGGCAGGTATGTTCATT
1 AGTACAAATAGGGGCACGTATGTGCATT
7692342 CATTCAATAA
Statistics
Matches: 144, Mismatches: 44, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.25
Consensus pattern (40 bp):
AGTACAAATAGGGGCACGTATGTGCATTTAGGGGTACCGA
Found at i:7692255 original size:80 final size:80
Alignment explanation
Indices: 7692136--7692343 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
7692126 GGCACGTAAA
* * ** * * *
7692136 TGCATTTAGGGGAACCGAAGTACAAATCGGGGCACGTATGTGTATTTAAGGGTATCGAGGTACAA
1 TGCATTCAGGGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATCGAAGTACAA
7692201 TTAGGGGAACAAATG
66 TTAGGGGAACAAATG
* * * * * * *
7692216 TGTATTCATGGGTACCGAAGTGCAAAAAGGGGCATGTATGTGCATTCAGGGGTATCGAAGTATAT
1 TGCATTCAGGGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATCGAAGTACAA
* *
7692281 TTAGGGGCACATATG
66 TTAGGGGAACAAATG
* * * *
7692296 TGCATTTAGGGGTACCGAAGTACAAACAGGGGCAGGTATGTTCATTCA
1 TGCATTCAGGGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCA
7692344 TTCAATAATT
Statistics
Matches: 105, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 105 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.25
Consensus pattern (80 bp):
TGCATTCAGGGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATCGAAGTACAA
TTAGGGGAACAAATG
Found at i:7693245 original size:107 final size:102
Alignment explanation
Indices: 7693053--7693258 Score: 324
Period size: 107 Copynumber: 2.0 Consensus size: 102
7693043 GGTGTTTTAA
*
7693053 CACCCTAATTTTTGGTTGGTTCCCTTTTAGGAAGATGATAACTTTGTTTTTTTATTTAAGTTTTA
1 CACCCTAATTTTTGGTCGGTTCCCTTTTAGGAAGATGATAACTTTGTTTTTTTATTTAAGTTTTA
*
7693118 TTTAATAAATTAAAACTTTGTCCTTTAAATTATCGTG
66 TTTAACAAATTAAAACTTTGTCCTTTAAATTATCGTG
7693155 CACCCTAATTTTTGG-CGGTTCCCTTTTAGGAAGATGATAACTTTGTTATTCTATTTTTATTTAA
1 CACCCTAATTTTTGGTCGGTTCCCTTTTAGGAAGATGATAACTTTG----T-T-TTTTTATTTAA
*
7693219 GTTTTATTTAACAAATTAAAGCTTTGTCCTTTAAATTATC
60 GTTTTATTTAACAAATTAAAACTTTGTCCTTTAAATTATC
7693259 TTTCTTGTTA
Statistics
Matches: 95, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
101 29 0.31
102 15 0.16
105 1 0.01
106 1 0.01
107 49 0.52
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (102 bp):
CACCCTAATTTTTGGTCGGTTCCCTTTTAGGAAGATGATAACTTTGTTTTTTTATTTAAGTTTTA
TTTAACAAATTAAAACTTTGTCCTTTAAATTATCGTG
Found at i:7710293 original size:27 final size:27
Alignment explanation
Indices: 7710262--7710439 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7710252 TAAATTGTAC
7710262 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7710289 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7710315 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7710343 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7710371 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7710398 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7710425 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7710440 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7710376 original size:82 final size:81
Alignment explanation
Indices: 7710263--7710418 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7710253 AAATTGTACA
* *
7710263 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7710327 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7710344 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7710409 TGCGAGTTGA
65 TGCGAATTGA
7710419 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7710430 original size:82 final size:81
Alignment explanation
Indices: 7710259--7710439 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7710249 GATTAAATTG
* *
7710259 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7710324 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7710340 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7710404 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7710422 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7710440 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7714198 original size:35 final size:35
Alignment explanation
Indices: 7714099--7714249 Score: 167
Period size: 35 Copynumber: 4.3 Consensus size: 35
7714089 GTCAAACCAT
** * ** *
7714099 AACACGCCAGATGCTCATTGGAGCCAATCCCTCCAA
1 AACACGCCAG-TGCTCATAAGAGCTAATCCAACCGA
* * * *
7714135 AACACACCAAATGGTCACAAGAGCTAATCCAACCGA
1 AACACGCC-AGTGCTCATAAGAGCTAATCCAACCGA
* *
7714171 AACACGCCAGTGCTCATAAGAGCTAATCCGACTGA
1 AACACGCCAGTGCTCATAAGAGCTAATCCAACCGA
*
7714206 AACACGCCAGTGCCCATAAGAGCTAATCCAACCGA
1 AACACGCCAGTGCTCATAAGAGCTAATCCAACCGA
7714241 AACACGCCA
1 AACACGCCA
7714250 AACAGAGTGT
Statistics
Matches: 95, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
35 63 0.66
36 31 0.33
37 1 0.01
ACGTcount: A:0.37, C:0.33, G:0.17, T:0.13
Consensus pattern (35 bp):
AACACGCCAGTGCTCATAAGAGCTAATCCAACCGA
Found at i:7722199 original size:23 final size:23
Alignment explanation
Indices: 7722173--7722320 Score: 129
Period size: 23 Copynumber: 6.5 Consensus size: 23
7722163 TGTAGAATTA
*
7722173 GCCAGAAAGGCATTATAGAATAT
1 GCCAGAAAGGCATTACAGAATAT
* * *
7722196 GCCATAAAGGCATTGCAAAATACT
1 GCCAGAAAGGCATTACAGAATA-T
* *
7722220 G-CA-CAAGGCATTACAAAATAT
1 GCCAGAAAGGCATTACAGAATAT
*
7722241 GCCAGAAAGGCATTACAGAAAAT
1 GCCAGAAAGGCATTACAGAATAT
* * *
7722264 GCCAGAAAGACATTATAGAATAC
1 GCCAGAAAGGCATTACAGAATAT
** * * *
7722287 GTAAAAAAGGCATTGCAAAATAT
1 GCCAGAAAGGCATTACAGAATAT
*
7722310 GCCACAAAGGC
1 GCCAGAAAGGC
7722321 TTTGCAAGTA
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
21 2 0.02
22 17 0.17
23 77 0.79
24 2 0.02
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.18
Consensus pattern (23 bp):
GCCAGAAAGGCATTACAGAATAT
Found at i:7722286 original size:68 final size:69
Alignment explanation
Indices: 7722173--7722320 Score: 181
Period size: 68 Copynumber: 2.2 Consensus size: 69
7722163 TGTAGAATTA
* * * * * ** *
7722173 GCCAGAAAGGCATTATAGAATATGCCATAAAGGCATTGCAAAATAC-TGCACAAGGCATTACAAA
1 GCCAGAAAGGCATTACAGAAAATGCCAGAAAGACATTACAAAATACGTAAAAAAGGCATTACAAA
7722237 ATAT
66 ATAT
* * *
7722241 GCCAGAAAGGCATTACAGAAAATGCCAGAAAGACATTATAGAATACGTAAAAAAGGCATTGCAAA
1 GCCAGAAAGGCATTACAGAAAATGCCAGAAAGACATTACAAAATACGTAAAAAAGGCATTACAAA
7722306 ATAT
66 ATAT
*
7722310 GCCACAAAGGC
1 GCCAGAAAGGC
7722321 TTTGCAAGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 39 0.58
69 28 0.42
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.18
Consensus pattern (69 bp):
GCCAGAAAGGCATTACAGAAAATGCCAGAAAGACATTACAAAATACGTAAAAAAGGCATTACAAA
ATAT
Found at i:7724498 original size:50 final size:50
Alignment explanation
Indices: 7724371--7724667 Score: 265
Period size: 50 Copynumber: 5.8 Consensus size: 50
7724361 TGATAATACA
* * * ** * * *
7724371 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTTC-TGTT-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATTGG
* * * * **
7724420 TGCCAAAGCCATATCCAAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* ** * *
7724470 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
**
7724520 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * *
7724570 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTTAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A---T--TGG
* * * *
7724626 TGCCAATGTCATGTCCCAAACATGGCCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7724668 TTACCCAAAT
Statistics
Matches: 206, Mismatches: 34, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
48 5 0.02
49 35 0.17
50 126 0.61
51 1 0.00
54 1 0.00
56 38 0.18
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
Found at i:7730085 original size:33 final size:33
Alignment explanation
Indices: 7730048--7730111 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
7730038 TTAATTCCTA
* *
7730048 AACCCGAAACTTTGGTAACCAAAATTTTCATTT
1 AACCCCAAACTATGGTAACCAAAATTTTCATTT
*
7730081 AACCCCAAACTATGGTAACCAAATTTTTCAT
1 AACCCCAAACTATGGTAACCAAAATTTTCAT
7730112 AGTCCCTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (33 bp):
AACCCCAAACTATGGTAACCAAAATTTTCATTT
Found at i:7730375 original size:18 final size:17
Alignment explanation
Indices: 7730345--7730378 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7730335 ATTAAGCTAC
7730345 AAAAATATCAAAAACAT
1 AAAAATATCAAAAACAT
*
7730362 AAAAATTATTAAAAACA
1 AAAAA-TATCAAAAACA
7730379 AGTGCTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATATCAAAAACAT
Found at i:7740364 original size:30 final size:30
Alignment explanation
Indices: 7740323--7740462 Score: 106
Period size: 30 Copynumber: 4.7 Consensus size: 30
7740313 AGGTGAAGCT
* * *
7740323 ATCCGTTTTCATATTTTGATGGTCACCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * *
7740353 ATCCCTTTTCAT-AGTTGATGGTCGTCACA
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * * * *
7740382 ATCCCTTTCCCATAATTCGATAG-C-TGAAGCT
1 ATCCCTTT-TCATAATTTGATGGTCAT-CA-CC
* * *
7740413 ATCCCTTTTAATATTTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
7740443 ATCCCTTTTCATAATTTGAT
1 ATCCCTTTTCATAATTTGAT
7740463 AGCCGAAGCT
Statistics
Matches: 83, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
29 21 0.25
30 44 0.53
31 17 0.20
32 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:7740374 original size:29 final size:30
Alignment explanation
Indices: 7740323--7740389 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 30
7740313 AGGTGAAGCT
* * *
7740323 ATCCGTTTTCATATTTTGATGGTCACCACC
1 ATCCCTTTTCATATGTTGATGGTCACCACA
**
7740353 ATCCCTTTTCATA-GTTGATGGTCGTCACA
1 ATCCCTTTTCATATGTTGATGGTCACCACA
7740382 ATCCCTTT
1 ATCCCTTT
7740390 CCCATAATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 20 0.62
30 12 0.38
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATATGTTGATGGTCACCACA
Found at i:7740454 original size:90 final size:90
Alignment explanation
Indices: 7740288--7740522 Score: 305
Period size: 90 Copynumber: 2.6 Consensus size: 90
7740278 CACGATAGTT
* * *
7740288 GTCACCAT-CCTTTCCATAATTCGATAGGTGAAGCTATCCGTTTTCATATTTTGATGGTCACCAC
1 GTCACAATCCCTTTCCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCACCAC
* *
7740352 CATCCCTTTTCAT-AGTTGATGGTC
66 CATCCCTTTTCATAAGTTGATAGCC
* **
7740376 GTCACAATCCCTTTCCCATAATTCGATAGCTGAAGCTATCCCTTTTAATATTTTGATGGTCGTCA
1 GTCACAATCCCTTT-CCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCACCA
*
7740441 CCATCCCTTTTCATAATTTGATAGCC
65 CCATCCCTTTTCATAAGTTGATAGCC
* * * * *
7740467 G-AAGCTATCCCTTTCCGTAATTCGATAGTTGAAACTATCCCTTTTCATATTTTGAT
1 GTCA-CAATCCCTTTCCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGAT
7740523 AGCCGAAGAT
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
88 7 0.05
89 5 0.04
90 98 0.77
91 18 0.14
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (90 bp):
GTCACAATCCCTTTCCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCACCAC
CATCCCTTTTCATAAGTTGATAGCC
Found at i:7740464 original size:60 final size:59
Alignment explanation
Indices: 7740353--7740552 Score: 220
Period size: 60 Copynumber: 3.3 Consensus size: 59
7740343 GGTCACCACC
* * * *
7740353 ATCCCTTTTCATAGTTGATGGTCGTCACAATCCCTTTCCCATAATTCGATAGCTGAAGCT
1 ATCCCTTTTCATATTTGATGGTCGTCACAATCCCTTT-TCATAATTTGATAGCCGAAGCT
* *
7740413 ATCCCTTTTAATATTTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAAGCT
1 ATCCCTTTTCATA-TTTGATGGTCGTCACAATCCCTTTTCATAATTTGATAGCCGAAGCT
* * * * * ** * * *
7740473 ATCCCTTTCCGTAATTCGATAGTTGAAACTATCCCTTTTCATATTTTGATAGCCGAAGAT
1 ATCCCTTTTCAT-ATTTGATGGTCGTCACAATCCCTTTTCATAATTTGATAGCCGAAGCT
7740533 ATCCCTTTTCATTATTTGAT
1 ATCCCTTTTCA-TATTTGAT
7740553 AGCCGAAGTA
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
60 93 0.79
61 24 0.21
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (59 bp):
ATCCCTTTTCATATTTGATGGTCGTCACAATCCCTTTTCATAATTTGATAGCCGAAGCT
Found at i:7740477 original size:30 final size:30
Alignment explanation
Indices: 7740382--7740573 Score: 190
Period size: 30 Copynumber: 6.4 Consensus size: 30
7740372 GGTCGTCACA
* * *
7740382 ATCCCTTTCCCATAATTCGATAGCTGAAGCT
1 ATCCCTTT-TCATAATTTGATAGCCGAAGCT
* * * * * *
7740413 ATCCCTTTTAATATTTTGATGGTCGTCA-CC
1 ATCCCTTTTCATAATTTGATAGCCG-AAGCT
7740443 ATCCCTTTTCATAATTTGATAGCCGAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* * * ** *
7740473 ATCCCTTTCCGTAATTCGATAGTTGAAACT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* *
7740503 ATCCCTTTTCATATTTTGATAGCCGAAGAT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
*
7740533 ATCCCTTTTCATTATTTGATAGCCGAAG-T
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
7740562 ATCCCTTTTCAT
1 ATCCCTTTTCAT
7740574 TTGTCGATAG
Statistics
Matches: 128, Mismatches: 31, Indels: 6
0.78 0.19 0.04
Matches are distributed among these distances:
29 14 0.11
30 105 0.82
31 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGCCGAAGCT
Found at i:7740537 original size:90 final size:88
Alignment explanation
Indices: 7740296--7740569 Score: 302
Period size: 90 Copynumber: 3.1 Consensus size: 88
7740286 TTGTCACCAT
* * *
7740296 CCTTTCCATAATTCGATAGGTGAAGCTATCCGTTTTCATATTTTGATGGTC-ACCACCATCCCTT
1 CCTTTCCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCGA--AACATCCCTT
* * * * *
7740360 TTCATAGTTGATGGTCGTCA-CAATC
64 TTCATATTTGATAGCCG-AAGCTATC
* * *
7740385 CCTTTCCCATAATTCGATAGCTGAAGCTATCCCTTTTAATATTTTGATGGTCGTCACCATCCCTT
1 CCTTT-CCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCG-AAACATCCCTT
7740450 TTCATAATTTGATAGCCGAAGCTATC
64 TTCAT-ATTTGATAGCCGAAGCTATC
* * * * * *
7740476 CCTTTCCGTAATTCGATAGTTGAAACTATCCCTTTTCATATTTTGATAGCCGAAGATATCCCTTT
1 CCTTTCCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCGAA-ACATCCCTTT
7740541 TCATTATTTGATAGCCGAAG-TATC
65 TCA-TATTTGATAGCCGAAGCTATC
7740565 CCTTT
1 CCTTT
7740570 TCATTTGTCG
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
89 15 0.09
90 126 0.79
91 19 0.12
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (88 bp):
CCTTTCCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCGAAACATCCCTTTT
CATATTTGATAGCCGAAGCTATC
Found at i:7740582 original size:29 final size:29
Alignment explanation
Indices: 7740443--7740589 Score: 136
Period size: 30 Copynumber: 4.9 Consensus size: 29
7740433 GGTCGTCACC
* *
7740443 ATCCCTTTTCATAATTTGATAGCCGAAGCT
1 ATCCCTTTTCAT-TTTTGATAGCCGAAGAT
* * * * **
7740473 ATCCCTTTCCGTAATTCGATAGTTGAA-ACT
1 ATCCCTTTTCAT-TTTTGATAGCCGAAGA-T
7740503 ATCCCTTTTCATATTTTGATAGCCGAAGAT
1 ATCCCTTTTCAT-TTTTGATAGCCGAAGAT
7740533 ATCCCTTTTCATTATTTGATAGCCGAAG-T
1 ATCCCTTTTCATT-TTTGATAGCCGAAGAT
* *
7740562 ATCCCTTTTCATTTGTCGATAGTCGAAG
1 ATCCCTTTTCATTT-TTGATAGCCGAAG
7740590 CTATTCCTGT
Statistics
Matches: 99, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
28 1 0.01
29 26 0.26
30 71 0.72
31 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATTTTTGATAGCCGAAGAT
Found at i:7747240 original size:68 final size:68
Alignment explanation
Indices: 7747129--7747266 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 68
7747119 TGTTGTACCT
*
7747129 TTCAACTGATCAAACAGATAATCAATACGAGGTAATGGTTATTTCTTATTGATCATAAATTTTTT
1 TTCAACTGATCAAACAGATAATCAATACGAGGTAATGGGTATTTCTTATTGATCATAAATTTTTT
7747194 GAG
66 GAG
* *
7747197 TTCAACTGATCAAACAGATAATCAATACGCGGTAATGGGTATTTCTTATTGATCGTAAATTTTTT
1 TTCAACTGATCAAACAGATAATCAATACGAGGTAATGGGTATTTCTTATTGATCATAAATTTTTT
7747262 GAG
66 GAG
7747265 TT
1 TT
7747267 GGCGATAATC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.38
Consensus pattern (68 bp):
TTCAACTGATCAAACAGATAATCAATACGAGGTAATGGGTATTTCTTATTGATCATAAATTTTTT
GAG
Found at i:7750904 original size:30 final size:30
Alignment explanation
Indices: 7750863--7750997 Score: 121
Period size: 30 Copynumber: 4.5 Consensus size: 30
7750853 ATAGCTGAAG
7750863 CTATCCCTTTTCATATTTTGATGGTCGTCA
1 CTATCCCTTTTCATATTTTGATGGTCGTCA
* * * *
7750893 CTATTCCTTTTCATA-GTTGATGGTTGGCA
1 CTATCCCTTTTCATATTTTGATGGTCGTCA
* * * ** * *
7750922 CCATCCCTATTGCATAATTTGACAGCCG-AA
1 CTATCCCT-TTTCATATTTTGATGGTCGTCA
*
7750952 GCTATCCCATTTCATATTTTGATGGTCGTCA
1 -CTATCCCTTTTCATATTTTGATGGTCGTCA
*
7750983 CCATCCCTTTTCATA
1 CTATCCCTTTTCATA
7750998 AATTGATAGC
Statistics
Matches: 78, Mismatches: 23, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
29 17 0.22
30 48 0.62
31 13 0.17
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (30 bp):
CTATCCCTTTTCATATTTTGATGGTCGTCA
Found at i:7751010 original size:60 final size:59
Alignment explanation
Indices: 7750901--7751023 Score: 158
Period size: 60 Copynumber: 2.1 Consensus size: 59
7750891 CACTATTCCT
* *
7750901 TTTCATAGTTGATGGTTGGCACCATCCCTATTGCATAATTTGACAGCCGAAGCTATCCC
1 TTTCATAGTTGATGGTCGGCACCATCCCTATTGCATAAATTGACAGCCGAAGCTATCCC
* * * * *
7750960 ATTTCATATTTTGATGGTCGTCACCATCCCT-TTTCATAAATTGATAGCCGAAGTTATCCC
1 -TTTCATA-GTTGATGGTCGGCACCATCCCTATTGCATAAATTGACAGCCGAAGCTATCCC
7751020 TTTC
1 TTTC
7751024 CATAATTCAA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
59 4 0.07
60 32 0.58
61 19 0.35
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (59 bp):
TTTCATAGTTGATGGTCGGCACCATCCCTATTGCATAAATTGACAGCCGAAGCTATCCC
Found at i:7751019 original size:30 final size:31
Alignment explanation
Indices: 7750985--7751057 Score: 105
Period size: 30 Copynumber: 2.4 Consensus size: 31
7750975 GGTCGTCACC
* *
7750985 ATCCCTTTTCATAAATT-GATAGCCGAAGTT
1 ATCCCTTTTCATAAATTCAATAGCCGAAGCT
*
7751015 ATCCCTTTCCAT-AATTCAATAGCCGAAGCT
1 ATCCCTTTTCATAAATTCAATAGCCGAAGCT
7751045 ATCCCTTTTCATA
1 ATCCCTTTTCATA
7751058 GTATTTCAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 4 0.11
30 33 0.89
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.36
Consensus pattern (31 bp):
ATCCCTTTTCATAAATTCAATAGCCGAAGCT
Found at i:7751028 original size:90 final size:89
Alignment explanation
Indices: 7750840--7751057 Score: 267
Period size: 90 Copynumber: 2.4 Consensus size: 89
7750830 GTCACCATCA
* * *
7750840 TTTCCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTTGATGGTCGTCACTATTCCTTTTC
1 TTTCCATAATTCGATAGCCGAAGCTATCCCTTTTCATATTTTGATGGTCGTCACCATCCCTTTTC
* * ** *
7750905 ATAGTTGATGGTTGGCACCATCCC
66 ATAATTGATAGTCCGAACCATCCC
* * * *
7750929 TATTGCATAATTTGACAGCCGAAGCTATCCCATTTCATATTTTGATGGTCGTCACCATCCCTTTT
1 T-TTCCATAATTCGATAGCCGAAGCTATCCCTTTTCATATTTTGATGGTCGTCACCATCCCTTTT
**
7750994 CATAAATTGATAG-CCGAAGTTATCCC
65 CAT-AATTGATAGTCCGAA-CCATCCC
*
7751020 TTTCCATAATTCAATAGCCGAAGCTATCCCTTTTCATA
1 TTTCCATAATTCGATAGCCGAAGCTATCCCTTTTCATA
7751058 GTATTTCAAG
Statistics
Matches: 107, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
89 1 0.01
90 93 0.87
91 13 0.12
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (89 bp):
TTTCCATAATTCGATAGCCGAAGCTATCCCTTTTCATATTTTGATGGTCGTCACCATCCCTTTTC
ATAATTGATAGTCCGAACCATCCC
Found at i:7759238 original size:41 final size:41
Alignment explanation
Indices: 7759131--7759238 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 41
7759121 ATGGGCTTAT
*
7759131 TGCCTAGCAGGCTTTAAGCCGGTGAAATGTTTCAAGTCTTG
1 TGCCTAGCAGGCTTTAAGCCGGTGAAATGTTTCAAGCCTTG
* * * * * * * *
7759172 AGCATAGCATGCTTTAGGTCAGTGAAATGTTTTAGGCCTTG
1 TGCCTAGCAGGCTTTAAGCCGGTGAAATGTTTCAAGCCTTG
* *
7759213 TGCCTAGCAGGCTTCATGCCGGTGAA
1 TGCCTAGCAGGCTTTAAGCCGGTGAA
7759239 CGATTCATTC
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (41 bp):
TGCCTAGCAGGCTTTAAGCCGGTGAAATGTTTCAAGCCTTG
Found at i:7760885 original size:27 final size:27
Alignment explanation
Indices: 7760855--7761032 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7760845 ATATTGAGTC
* * * *
7760855 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7760882 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7760909 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7760937 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7760964 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7760991 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7761018 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7761033 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7760994 original size:82 final size:81
Alignment explanation
Indices: 7760876--7761031 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7760866 TGCTATATAA
* *
7760876 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7760941 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7760958 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7761022 CACTTAGTGC
65 CACTTAGTGC
7761032 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7769075 original size:27 final size:27
Alignment explanation
Indices: 7769045--7769222 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7769035 ATATTGAGTC
* * * *
7769045 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7769072 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7769099 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7769127 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7769154 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7769181 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7769208 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7769223 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7769184 original size:82 final size:81
Alignment explanation
Indices: 7769066--7769221 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7769056 TGCTATATAA
* *
7769066 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7769131 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7769148 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7769212 CACTTAGTGC
65 CACTTAGTGC
7769222 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7774853 original size:201 final size:201
Alignment explanation
Indices: 7774616--7775017 Score: 804
Period size: 201 Copynumber: 2.0 Consensus size: 201
7774606 TGAATTTTTT
7774616 CCGGTAAATATTTTTTTTATTCAATCACAGTGCCACAAATATGTATGTAAAATTTCAGATCAATC
1 CCGGTAAATATTTTTTTTATTCAATCACAGTGCCACAAATATGTATGTAAAATTTCAGATCAATC
7774681 GGACAATGTTTACTCACTCAAATTAATTTTTTTCGAAAACTTTTCTTAGGTAAAACTGCTGTTTT
66 GGACAATGTTTACTCACTCAAATTAATTTTTTTCGAAAACTTTTCTTAGGTAAAACTGCTGTTTT
7774746 TAGTTTAAAAAATAGAGATCAGTTTAGAAATCAACCAAGAACACCCAAAACGCCCAAAATCTGAT
131 TAGTTTAAAAAATAGAGATCAGTTTAGAAATCAACCAAGAACACCCAAAACGCCCAAAATCTGAT
7774811 ACCAAA
196 ACCAAA
7774817 CCGGTAAATATTTTTTTTATTCAATCACAGTGCCACAAATATGTATGTAAAATTTCAGATCAATC
1 CCGGTAAATATTTTTTTTATTCAATCACAGTGCCACAAATATGTATGTAAAATTTCAGATCAATC
7774882 GGACAATGTTTACTCACTCAAATTAATTTTTTTCGAAAACTTTTCTTAGGTAAAACTGCTGTTTT
66 GGACAATGTTTACTCACTCAAATTAATTTTTTTCGAAAACTTTTCTTAGGTAAAACTGCTGTTTT
7774947 TAGTTTAAAAAATAGAGATCAGTTTAGAAATCAACCAAGAACACCCAAAACGCCCAAAATCTGAT
131 TAGTTTAAAAAATAGAGATCAGTTTAGAAATCAACCAAGAACACCCAAAACGCCCAAAATCTGAT
7775012 ACCAAA
196 ACCAAA
7775018 TGATAGAGGG
Statistics
Matches: 201, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 201 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.32
Consensus pattern (201 bp):
CCGGTAAATATTTTTTTTATTCAATCACAGTGCCACAAATATGTATGTAAAATTTCAGATCAATC
GGACAATGTTTACTCACTCAAATTAATTTTTTTCGAAAACTTTTCTTAGGTAAAACTGCTGTTTT
TAGTTTAAAAAATAGAGATCAGTTTAGAAATCAACCAAGAACACCCAAAACGCCCAAAATCTGAT
ACCAAA
Found at i:7775572 original size:213 final size:213
Alignment explanation
Indices: 7775205--7775633 Score: 849
Period size: 213 Copynumber: 2.0 Consensus size: 213
7775195 TAGATGTTCT
7775205 TGGAAGCCAAGAACACGAAATTAAGCCCTAAAATTAACTTCCAATCAGCCGAAACTATCAAAGAA
1 TGGAAGCCAAGAACACGAAATTAAGCCCTAAAATTAACTTCCAATCAGCCGAAACTATCAAAGAA
7775270 CACAAAACAGCAACTAAATTAAAAACAGATTGTGAAATCAATGGACACTAGTTCTAGGGATTCGA
66 CACAAAACAGCAACTAAATTAAAAACAGATTGTGAAATCAATGGACACTAGTTCTAGGGATTCGA
7775335 CTGCGAGAAAAGGGGGATTTTTGTGAATCAAAAACGTTTCTTTATGTCCAAGGAAGTGCCGAATC
131 CTGCGAGAAAAGGGGGATTTTTGTGAATCAAAAACGTTTCTTTATGTCCAAGGAAGTGCCGAATC
7775400 AGATCTTGAAGTTTGGAA
196 AGATCTTGAAGTTTGGAA
*
7775418 TGGAAGCCAAGAACACTAAATTAAGCCCTAAAATTAACTTCCAATCAGCCGAAACTATCAAAGAA
1 TGGAAGCCAAGAACACGAAATTAAGCCCTAAAATTAACTTCCAATCAGCCGAAACTATCAAAGAA
7775483 CACAAAACAGCAACTAAATTAAAAACAGATTGTGAAATCAATGGACACTAGTTCTAGGGATTCGA
66 CACAAAACAGCAACTAAATTAAAAACAGATTGTGAAATCAATGGACACTAGTTCTAGGGATTCGA
7775548 CTGCGAGAAAAGGGGGATTTTTGTGAATCAAAAACGTTTCTTTATGTCCAAGGAAGTGCCGAATC
131 CTGCGAGAAAAGGGGGATTTTTGTGAATCAAAAACGTTTCTTTATGTCCAAGGAAGTGCCGAATC
7775613 AGATCTTGAAGTTTGGAA
196 AGATCTTGAAGTTTGGAA
7775631 TGG
1 TGG
7775634 TTGAAACGAA
Statistics
Matches: 215, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 215 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (213 bp):
TGGAAGCCAAGAACACGAAATTAAGCCCTAAAATTAACTTCCAATCAGCCGAAACTATCAAAGAA
CACAAAACAGCAACTAAATTAAAAACAGATTGTGAAATCAATGGACACTAGTTCTAGGGATTCGA
CTGCGAGAAAAGGGGGATTTTTGTGAATCAAAAACGTTTCTTTATGTCCAAGGAAGTGCCGAATC
AGATCTTGAAGTTTGGAA
Found at i:7779403 original size:27 final size:27
Alignment explanation
Indices: 7779372--7779549 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7779362 TAAATTGTAC
7779372 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7779399 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7779425 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7779453 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7779481 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7779508 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7779535 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7779550 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7779486 original size:82 final size:81
Alignment explanation
Indices: 7779373--7779528 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7779363 AAATTGTACA
* *
7779373 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7779437 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7779454 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7779519 TGCGAGTTGA
65 TGCGAATTGA
7779529 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7779540 original size:82 final size:81
Alignment explanation
Indices: 7779369--7779549 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7779359 GATTAAATTG
* *
7779369 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7779434 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7779450 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7779514 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7779532 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7779550 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7781909 original size:25 final size:25
Alignment explanation
Indices: 7781856--7781938 Score: 64
Period size: 25 Copynumber: 3.3 Consensus size: 25
7781846 CATGTACATG
*
7781856 TATGCTCATACAAGCTGTGAATCGG
1 TATGCTCATACAAGCTGTGAATCGA
*
7781881 TATGCTCACT-CAAGCTGT-AGATTGA
1 TATGCTCA-TACAAGCTGTGA-ATCGA
* * * *
7781906 TATGCTC-TCACGAGCTATAAATCAA
1 TATGCTCAT-ACAAGCTGTGAATCGA
7781931 TATGCTCA
1 TATGCTCA
7781939 CATGAGCTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 42 0.91
26 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (25 bp):
TATGCTCATACAAGCTGTGAATCGA
Found at i:7783043 original size:17 final size:17
Alignment explanation
Indices: 7783021--7783061 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
7783011 TTTAAAATTG
*
7783021 AGCTATTTAATACGTTT
1 AGCTATTTAATACCTTT
7783038 AGCTATTTAATACCTTT
1 AGCTATTTAATACCTTT
7783055 AGCTATT
1 AGCTATT
7783062 AGAATTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (17 bp):
AGCTATTTAATACCTTT
Done.