Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 26 of 185
Found at i:7789001 original size:20 final size:22
Alignment explanation
Indices: 7788962--7789001 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
7788952 GTTCTAATGC
*
7788962 ACTTAGGTTATCTTTCTTCTAA
1 ACTTAGGTTATCTTTATTCTAA
7788984 ACTTA-GTT-TCTTTATTCT
1 ACTTAGGTTATCTTTATTCT
7789002 CATTTATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.55
Consensus pattern (22 bp):
ACTTAGGTTATCTTTATTCTAA
Found at i:7801405 original size:30 final size:30
Alignment explanation
Indices: 7801371--7801427 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7801361 GACCCACAGC
* *
7801371 CATGTTGCCAGGCCGTGTGCCACACATGGT
1 CATGTCGCCAAGCCGTGTGCCACACATGGT
* *
7801401 CATGTCGCCAAGCTGTGTGCCATACAT
1 CATGTCGCCAAGCCGTGTGCCACACAT
7801428 AGCTGAGTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.19, C:0.30, G:0.26, T:0.25
Consensus pattern (30 bp):
CATGTCGCCAAGCCGTGTGCCACACATGGT
Found at i:7804572 original size:55 final size:50
Alignment explanation
Indices: 7804500--7804606 Score: 117
Period size: 55 Copynumber: 2.0 Consensus size: 50
7804490 TGTTATTACA
* * *
7804500 ATTATTAGTATTTTTTTATATA-TCAATTAACTTAATTTCACTATAAATTTTCTT
1 ATTATTAATATTATTTTATATATTC-ATT-ACTTAATTT---TATAAATATTCTT
*
7804554 ATTATTTAATATTATTTTATGTATTCATTACTTAATTTTATAAATATTCTT
1 ATTA-TTAATATTATTTTATATATTCATTACTTAATTTTATAAATATTCTT
7804605 AT
1 AT
7804607 AAATATATGT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
51 14 0.30
54 13 0.28
55 18 0.38
56 2 0.04
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (50 bp):
ATTATTAATATTATTTTATATATTCATTACTTAATTTTATAAATATTCTT
Found at i:7808818 original size:25 final size:22
Alignment explanation
Indices: 7808790--7808868 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 22
7808780 ATCAAAAAAG
*
7808790 AAAAGAAAAATAAAAAAAAGTAA
1 AAAAAAAAAATAAAAAAAA-TAA
*
7808813 TAAAAAACAAAATCAAAAAATATAA
1 -AAAAAA-AAAAT-AAAAAAAATAA
*
7808838 AACAAAAAATATAAAAAAAA-AA
1 AA-AAAAAAAATAAAAAAAATAA
*
7808860 GAAAAAAAA
1 AAAAAAAAA
7808869 GTCAAAATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
21 6 0.13
22 3 0.07
23 7 0.15
24 11 0.24
25 12 0.26
26 7 0.15
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.10
Consensus pattern (22 bp):
AAAAAAAAAATAAAAAAAATAA
Found at i:7808831 original size:14 final size:14
Alignment explanation
Indices: 7808814--7808859 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
7808804 AAAAAGTAAT
7808814 AAAAA-ACAAAATCA
1 AAAAATACAAAA-CA
*
7808828 AAAAATATAAAACA
1 AAAAATACAAAACA
*
7808842 AAAAATATAAAA-A
1 AAAAATACAAAACA
7808855 AAAAA
1 AAAAA
7808860 GAAAAAAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 6 0.20
14 19 0.63
15 5 0.17
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAAATACAAAACA
Found at i:7808867 original size:14 final size:14
Alignment explanation
Indices: 7808783--7808869 Score: 50
Period size: 15 Copynumber: 5.9 Consensus size: 14
7808773 AATCACAATC
*
7808783 AAAAAAGAAAAGAA
1 AAAAAAAAAAAGAA
7808797 AAATAAAAAAAAGTAA
1 AAA-AAAAAAAAG-AA
**
7808813 TAAAAAACAAAATCAA
1 -AAAAAA-AAAAAGAA
* * *
7808829 AAAATATAAAACAA
1 AAAAAAAAAAAGAA
7808843 AAAATATAAAAAA-AA
1 AAAA-A-AAAAAAGAA
*
7808858 AAGAAAAAAAAG
1 AAAAAAAAAAAG
7808870 TCAAAATCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
13 6 0.11
14 14 0.25
15 18 0.32
16 12 0.21
17 7 0.12
ACGTcount: A:0.82, C:0.03, G:0.06, T:0.09
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:7808913 original size:6 final size:6
Alignment explanation
Indices: 7808872--7808905 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7808862 AAAAAAAGTC
*
7808872 AAAATC AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
7808906 AAAGAAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.71, C:0.03, G:0.12, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:7811573 original size:44 final size:44
Alignment explanation
Indices: 7811482--7811706 Score: 129
Period size: 44 Copynumber: 5.1 Consensus size: 44
7811472 TAATTCTACT
** * * * *
7811482 TCCCT-GGCCAGTAGTGGAATAGATTGAAGAT-TTCAGATCTTATC
1 TCCCTAGG-CAGTAGTGGAGCAGATTGAAGATGGT-GGATTTTACC
* *
7811526 TCCCTAGGCGGTAGTGGAGCAGATCGAAGATGGTGGATTTTACC
1 TCCCTAGGCAGTAGTGGAGCAGATTGAAGATGGTGGATTTTACC
* *** *** * * *
7811570 TCCCT-GTG-ATTACAGTGGAGTTCATTGAAGCCAGT-AATTCTACT
1 TCCCTAG-GCAGT--AGTGGAGCAGATTGAAGATGGTGGATTTTACC
* * * * *
7811614 TCCCTGGGCAGTAGTGGAGTAGATTGAAGAT-TTCAGATCTTACC
1 TCCCTAGGCAGTAGTGGAGCAGATTGAAGATGGT-GGATTTTACC
* *
7811658 TCCCTAGGCGGTAGTGGAGCAAATTGAAGATGGTGGATTTTACC
1 TCCCTAGGCAGTAGTGGAGCAGATTGAAGATGGTGGATTTTACC
7811702 TCCCT
1 TCCCT
7811707 GTGATTACAG
Statistics
Matches: 134, Mismatches: 37, Indels: 20
0.70 0.19 0.10
Matches are distributed among these distances:
42 1 0.01
43 17 0.13
44 94 0.70
45 22 0.16
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (44 bp):
TCCCTAGGCAGTAGTGGAGCAGATTGAAGATGGTGGATTTTACC
Found at i:7812057 original size:44 final size:43
Alignment explanation
Indices: 7811626--7812259 Score: 175
Period size: 44 Copynumber: 14.4 Consensus size: 43
7811616 CCTGGGCAGT
* ** *
7811626 AGTGGAGTAGATTGAAGATTTCAGATCTTACCTCCCTAGGCGGT
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCT-GGTTGC
* * * * * *
7811670 AGTGGAGCAAATTGAAGATGGT-GGATTTTACCTCCCTGTGATTAC
1 AGTGGAGTATATTGAAGAT-TTCAGATCTTACCTCCCTG-G-TTGC
* * * * **
7811715 AGTGGAGTACATTGAAGCCA-GTCA-TTC-TACTTCCCTGGGCAGC
1 AGTGGAGTATATTGAAG--ATTTCAGATCTTACCTCCCT-GGTTGC
* * * * * *
7811758 AGTAGAATAGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGT
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCT-GGTTGC
* * ** * *
7811802 AGTGGAGTACATCGAAGATGGCAGATTTTACCTCCCTGTGATTAC
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCTG-G-TTGC
* * * ** * **
7811847 AGTGGAATACATTGAAG---CCAGTAAT-TCTATTTCTCTGAGCAGC
1 AGTGGAGTATATTGAAGATTTCAG--ATCT-TACCTCCCTG-GTTGC
* * * * *
7811890 AGTGGAATAGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGT
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCT-GGTTGC
* ** * * *
7811934 AGTGGAGTATATCGAAGATGGCGGATTTTACCTCCCTGTGGTTAC
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCC--TGGTTGC
* * *
7811979 AGTAGAGTATATTGAAG---CCAGTAAT-TCTATCTCCCTGGTTGGC
1 AGTGGAGTATATTGAAGATTTCAG--ATCT-TACCTCCCTGGTT-GC
* * * * *
7812022 AGTGGAATAGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGT
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCT-GGTTGC
* ** * * *
7812066 AGTGGAGTATATCGAAGATGGCGGATTTTACCTCCCTGTGGTTAC
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCC--TGGTTGC
* * *
7812111 AGTAGAGTATATTGAAG---CCAGTAAT-TCTATCTCCCTGGTTGGC
1 AGTGGAGTATATTGAAGATTTCAG--ATCT-TACCTCCCTGGTT-GC
* * * * *
7812154 AGTGGAATAGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGT
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCT-GGTTGC
* * ** * * * *
7812198 TGTGGAGTAGATTGAAGATGGCGGATTTTACCTCCCTGTTATTAC
1 AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCTG--GTTGC
*
7812243 AGTGGAGTACATTGAAG
1 AGTGGAGTATATTGAAG
7812260 CCAGTAATTC
Statistics
Matches: 426, Mismatches: 120, Indels: 87
0.67 0.19 0.14
Matches are distributed among these distances:
41 1 0.00
42 20 0.05
43 68 0.16
44 232 0.54
45 93 0.22
46 11 0.03
47 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
AGTGGAGTATATTGAAGATTTCAGATCTTACCTCCCTGGTTGC
Found at i:7812409 original size:132 final size:132
Alignment explanation
Indices: 7811112--7812400 Score: 1786
Period size: 132 Copynumber: 9.8 Consensus size: 132
7811102 ACAGCGAAGG
* * * * *
7811112 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGTGGATTTC
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
7811177 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
7811242 AT
131 AT
* * * * ** * *
7811244 AGATTAAAGATTACAGACCTTGCCTCCCTCGGTTGCAGTGGAGCAG---GAAGATGGTGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
*
7811306 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAGCAGTGGA
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
7811371 AT
131 AT
* * * ** * * *
7811373 AGATTGAAGATTACAGACCTTGCCTCCCTCGGTTGAAGTGGGGCAG---GAAGATGGTGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
* *
7811435 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGCCAGTAGTGGA
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
7811500 AT
131 AT
* * **
7811502 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCGGTAGTGGAGCAGATCGAAGATGGTGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
* *
7811567 ACCTCCCTGTGATTACAGTGGAGTTCATTGAAGCCAGTAATTCTACTTCCCTGGGCAGTAGTGGA
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
*
7811632 GT
131 AT
* ** * *
7811634 AGATTGAAGATTTCAGATCTTACCTCCCTAGGCGGTAGTGGAGCAAATTGAAGATGGTGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
* *
7811699 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTCATTCTACTTCCCTGGGCAGCAGTAGA
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
7811764 AT
131 AT
* * **
7811766 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGTACATCGAAGATGGCAGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
* * * *
7811831 ACCTCCCTGTGATTACAGTGGAATACATTGAAGCCAGTAATTCTATTTCTCTGAGCAGCAGTGGA
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
7811896 AT
131 AT
* * *
7811898 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGTATATCGAAGATGGCGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
* * * ***
7811963 ACCTCCCTGTGGTTACAGTAGAGTATATTGAAGCCAGTAATTCTA-TCTCCCTGGTTGGCAGTGG
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGG
7812027 AAT
130 AAT
* * *
7812030 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGTATATCGAAGATGGCGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
* * * ***
7812095 ACCTCCCTGTGGTTACAGTAGAGTATATTGAAGCCAGTAATTCTA-TCTCCCTGGTTGGCAGTGG
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGG
7812159 AAT
130 AAT
* * * *
7812162 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTTGTGGAGTAGATTGAAGATGGCGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
*
7812227 ACCTCCCTGTTATTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCAGCAGTGG
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGG
7812291 AAT
130 AAT
* * * * *
7812294 AGATTGAAGATTTTAGATCTCATCTCCCTAAGTAGTAGTGGAGCAAATCGAAGATGATGGATTTT
1 AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
** * *
7812359 ACCTCATTGTGATTACAGTGGAGTACATGGAAGCCTGTAATT
66 ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATT
7812401 TTATCTCCCC
Statistics
Matches: 1066, Mismatches: 87, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
129 241 0.23
131 1 0.00
132 824 0.77
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (132 bp):
AGATTGAAGATTTCAGATCTTACCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTT
ACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
AT
Found at i:7820122 original size:20 final size:20
Alignment explanation
Indices: 7820083--7820123 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7820073 CCCTGAAGTT
* * *
7820083 TGAAAAATTTTATCTTTTTC
1 TGAAAAATTTCATATGTTTC
7820103 TGAAAAATTTCATATGTTTC
1 TGAAAAATTTCATATGTTTC
7820123 T
1 T
7820124 AATTTAGTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (20 bp):
TGAAAAATTTCATATGTTTC
Found at i:7825493 original size:16 final size:16
Alignment explanation
Indices: 7825472--7825502 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7825462 TAAATTATAT
7825472 TTTTTATTTTTAATAA
1 TTTTTATTTTTAATAA
7825488 TTTTTATTTTTAATA
1 TTTTTATTTTTAATA
7825503 TTCCAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTATTTTTAATAA
Found at i:7826091 original size:66 final size:66
Alignment explanation
Indices: 7825980--7826110 Score: 253
Period size: 66 Copynumber: 2.0 Consensus size: 66
7825970 CCTAAAGTGC
7825980 TTTTATATCATGACAACTAATTTGATAAAGAAATGAATTTCAAGTTGCAAAGATAATTTTAATTT
1 TTTTATATCATGACAACTAATTTGATAAAGAAATGAATTTCAAGTTGCAAAGATAATTTTAATTT
7826045 T
66 T
*
7826046 TTTTGTATCATGACAACTAATTTGATAAAGAAATGAATTTCAAGTTGCAAAGATAATTTTAATTT
1 TTTTATATCATGACAACTAATTTGATAAAGAAATGAATTTCAAGTTGCAAAGATAATTTTAATTT
7826111 CTATTTTTTG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (66 bp):
TTTTATATCATGACAACTAATTTGATAAAGAAATGAATTTCAAGTTGCAAAGATAATTTTAATTT
T
Found at i:7827976 original size:49 final size:49
Alignment explanation
Indices: 7827919--7828022 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
7827909 TCATGTGTTA
* * *
7827919 TAATTTTATAAAGTGTTGAGCTTTTGATTCATGAAATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGAAATTAAACTTAATTT
*
7827968 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGAAATTAAACTTAATTT
7828017 TAATTT
1 TAATTT
7828023 ATTTTTTTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.49
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGAAATTAAACTTAATTT
Found at i:7829448 original size:21 final size:21
Alignment explanation
Indices: 7829407--7829449 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7829397 TACCATGTAG
*
7829407 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
7829428 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
7829449 A
1 A
7829450 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:7829471 original size:59 final size:59
Alignment explanation
Indices: 7829407--7829592 Score: 182
Period size: 59 Copynumber: 3.2 Consensus size: 59
7829397 TACCATGTAG
7829407 ATTATATATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA
1 ATTATATATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA
* * * * * ** * * * * *
7829466 ATTATAT-TGAATTTTATTA-AATTATATATTTTTATTAAATTATATTTA-ATAATAATT
1 ATTATATATTATTTTTA-TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA
* * *
7829523 ATTTTAAATTATATTTTATAGTATTATTTATTATGATTTTAGTAAATTCATATAAGAATA
1 ATTATATATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA
*
7829583 TTTA-ATATTA
1 ATTATATATTA
7829593 AGAATTTTAT
Statistics
Matches: 92, Mismatches: 30, Indels: 10
0.70 0.23 0.08
Matches are distributed among these distances:
57 12 0.13
58 32 0.35
59 39 0.42
60 9 0.10
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (59 bp):
ATTATATATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA
Found at i:7829483 original size:10 final size:10
Alignment explanation
Indices: 7829465--7829537 Score: 50
Period size: 10 Copynumber: 7.9 Consensus size: 10
7829455 ATATAAGAAT
*
7829465 AATTATATTG
1 AATTATATTA
*
7829475 AATTTTATTA
1 AATTATATTA
7829485 AATTATA-T-
1 AATTATATTA
* *
7829493 ATTTTTATTA
1 AATTATATTA
*
7829503 AATTATATTT
1 AATTATATTA
7829513 AA-TA-A-T-
1 AATTATATTA
*
7829519 AATTATTTTA
1 AATTATATTA
7829529 AATTATATT
1 AATTATATT
7829538 TTATAGTATT
Statistics
Matches: 47, Mismatches: 10, Indels: 12
0.68 0.14 0.17
Matches are distributed among these distances:
6 2 0.04
7 3 0.06
8 6 0.13
9 5 0.11
10 31 0.66
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (10 bp):
AATTATATTA
Found at i:7829533 original size:64 final size:61
Alignment explanation
Indices: 7829465--7829632 Score: 154
Period size: 64 Copynumber: 2.8 Consensus size: 61
7829455 ATATAAGAAT
*
7829465 AATTATATTGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTA
1 AATTATATTGAATTTTATTAAATTATATATTTTTATTAAATTATATTT-ATAAGAA-TA-TTTA
** ** * * *
7829529 AATTATATTTTATAGTATT-ATTTAT-TATGATTTTAGTAAATT-CA--TATAAGAATATTTA
1 AATTATATTGAATTTTATTAAATTATATAT--TTTTATTAAATTATATTTATAAGAATATTTA
7829587 ATATTA-A--GAATTTTATTAAATTATATATTTTTATTAAATTATATTT
1 A-ATTATATTGAATTTTATTAAATTATATATTTTTATTAAATTATATTT
7829633 CTAACAGGCC
Statistics
Matches: 81, Mismatches: 15, Indels: 21
0.69 0.13 0.18
Matches are distributed among these distances:
56 17 0.21
57 6 0.07
58 9 0.11
59 7 0.09
60 6 0.07
61 1 0.01
62 3 0.04
63 6 0.07
64 26 0.32
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.55
Consensus pattern (61 bp):
AATTATATTGAATTTTATTAAATTATATATTTTTATTAAATTATATTTATAAGAATATTTA
Found at i:7829555 original size:117 final size:118
Alignment explanation
Indices: 7829414--7829632 Score: 388
Period size: 117 Copynumber: 1.9 Consensus size: 118
7829404 TAGATTATAT
7829414 ATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-ATATT-GAA
1 ATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAGAA
7829477 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
* *
7829530 ATTATATTTTATAGTATTATTTATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATT-AG
7829595 AATTTTATTAAATTATATATTTTTATTAAATTATATTT
64 AATTTTATTAAATTATATATTTTTATTAAATTATATTT
7829633 CTAACAGGCC
Statistics
Matches: 97, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
116 5 0.05
117 48 0.49
118 5 0.05
120 39 0.40
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.54
Consensus pattern (118 bp):
ATTATTTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
Found at i:7833060 original size:14 final size:14
Alignment explanation
Indices: 7833041--7833067 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7833031 AAGAGATTTG
7833041 TTTTCTAGTAAAGT
1 TTTTCTAGTAAAGT
7833055 TTTTCTAGTAAAG
1 TTTTCTAGTAAAG
7833068 AATTGAACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (14 bp):
TTTTCTAGTAAAGT
Found at i:7835779 original size:12 final size:12
Alignment explanation
Indices: 7835762--7835786 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7835752 ATCTTGAGTG
7835762 AGATGGATGGTA
1 AGATGGATGGTA
7835774 AGATGGATGGTA
1 AGATGGATGGTA
7835786 A
1 A
7835787 AGATTTTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (12 bp):
AGATGGATGGTA
Found at i:7837251 original size:45 final size:45
Alignment explanation
Indices: 7837185--7838004 Score: 552
Period size: 45 Copynumber: 17.7 Consensus size: 45
7837175 TTGAAAACAA
**
7837185 CAGATCTTGTCTTCCTGTATTGAAAGCGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * *
7837230 CAGATCTTGTCTTCCTATATTGAG-AGCGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTGTATTG-GCAGCGAAGTAGATCAAAGATAG
* *
7837275 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * * *
7837320 CAGATCTTGTCATCCTATATTGGTAGCGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* *
7837365 CAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * * *
7837410 CAGATCTTGTCTTTCTATATTGGTAGCGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * *
7837455 CAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATTAAAAATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * *
7837500 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * *
7837545 CAGATCTTGTTTTTCTGTATTGACAGCGAAGTAGATCAAAGATAGG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATA-G
* ** * ** * * * ** * * * **
7837591 TAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTA-TTG-GCAGCGA-AG
1 CA--GATCTTG-TC-----TTCCTG-TATTGGC-AGC-GAAGTAGATCAAAGATAG
* *** ** * * * ** * ***
7837644 TAGATC-AAACATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAG
1 CAGATCTTGTC-TTCCTG-TATTGGC-AGCGA-A---GTAGATCAA-AGAT---AG
*
7837699 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAACATAG
1 ----CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * * *
7837748 CAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * * * *
7837793 TAGATCTTGTCTTCCTATACTAGCAGCGAAGTAGATTAGAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * *
7837838 CAGATCTTGTCTTCATGTATTGGCAGCAAAGTGGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * * * *
7837883 CAGATCTTATCTTCCTATACTGGCAGTGAACTAGATCAGAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* * * *
7837928 CAGATCTTGTCTTCTTGTATTGGCAGCAAAGTGGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
* *
7837973 CAGATCTTATCTTCCTGTACTGGCAGCGAAGT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGT
7838005 GGATTGAAGA
Statistics
Matches: 597, Mismatches: 148, Indels: 60
0.74 0.18 0.07
Matches are distributed among these distances:
44 1 0.00
45 529 0.89
46 1 0.00
48 4 0.01
49 6 0.01
50 3 0.01
51 4 0.01
52 3 0.01
53 9 0.02
54 4 0.01
55 11 0.02
56 4 0.01
57 4 0.01
58 5 0.01
59 8 0.01
60 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
Found at i:7837336 original size:90 final size:90
Alignment explanation
Indices: 7837183--7837589 Score: 672
Period size: 90 Copynumber: 4.5 Consensus size: 90
7837173 GGTTGAAAAC
* *
7837183 AACAGATCTTGTCTTCCTGTATTGAAAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTAT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTAT
7837248 ATTGAG-AGCGAAGTAGATCGAAGAT
66 ATTG-GTAGCGAAGTAGATCGAAGAT
* * *
7837273 AACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAGCAGATCTTGTCATCCTAT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTAT
7837338 ATTGGTAGCGAAGTAGATCGAAGAT
66 ATTGGTAGCGAAGTAGATCGAAGAT
* *
7837363 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAATATAGCAGATCTTGTCTTTCTAT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTAT
7837428 ATTGGTAGCGAAGTAGATCGAAGAT
66 ATTGGTAGCGAAGTAGATCGAAGAT
* * * *
7837453 AACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATTAAAAATAGCAGATCTTGTCTTCCTAT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTAT
7837518 ATTGGTAGCGAAGTAGATCGAAGAT
66 ATTGGTAGCGAAGTAGATCGAAGAT
* * *
7837543 AACAGATCTTGTTTTTCTGTATTGACAGCGAAGTAGATCAAAGATAG
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAAATAG
7837590 GTAGCGAAGT
Statistics
Matches: 293, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
89 1 0.00
90 292 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (90 bp):
AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTAT
ATTGGTAGCGAAGTAGATCGAAGAT
Found at i:7837438 original size:135 final size:135
Alignment explanation
Indices: 7837185--7838004 Score: 703
Period size: 135 Copynumber: 5.9 Consensus size: 135
7837175 TTGAAAACAA
* ** * *
7837185 CAGATCTTGTCTTCCTGTATTGAAAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATAT
* *
7837250 TGAGAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAA
66 TGACAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAA
7837315 AATAG
131 AATAG
* *
7837320 CAGATCTTGTCATCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATAT
* * * * * * *
7837385 TGACAGCGAAGTAGATCAAATATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAGTAGATCGAA
66 TGACAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAA
* *
7837450 GATAA
131 AATAG
* * * * ** * *
7837455 CAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATTAAAAATAGCAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATAT
** * * *
7837520 TGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTTTTTCTGTATTGACAGCGAAGTAGATCAAA
66 TGACAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAA
7837585 GATAGGTAG
131 -A-A--TAG
** ** ** * * ** * * * *
7837594 CGAAGTAGATCAAAGAT-AACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAACATAG
1 C-----AGATC-TTG-TCTTCCTATATTG-GTAGC-GAAGTAG-ATCG-A--AGAT-----A-A-
* ** *
7837658 CAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCTGTAT
46 CAGATCTTGTCTTCCTATATTGACAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTAT
*
7837723 TGGCAGCGAAGTAGATCAAACATAG
111 TGGCAGCGAAGTAGATCAAAAATAG
* * *
7837748 CAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAATAGATCTTGTCTTCCTATAC
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATAT
* * * * * *
7837813 T-AGCAGCGAAGTAGAT-TAGAGATAGCAGATCTTGTCTTCATGTATTGGCAGCAAAGTGGATCG
66 TGA-CAGCGAAGTAGATCGA-AGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
*
7837876 AAGATAG
129 AAAATAG
* * * * * * * *
7837883 CAGATCTTATCTTCCTATACTGGCAGTGAACTAGATC-AGAGATAGCAGATCTTGTCTTCTTGTA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA-AGATAACAGATCTTGTCTTCCTATA
* * * * * *
7837947 TTGGCAGCAAAGTGGATCGAAGATAGCAGATCTTATCTTCCTGTACTGGCAGCGAAGT
65 TTGACAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGT
7838005 GGATTGAAGA
Statistics
Matches: 543, Mismatches: 112, Indels: 60
0.76 0.16 0.08
Matches are distributed among these distances:
134 2 0.00
135 401 0.74
136 2 0.00
137 2 0.00
139 3 0.01
142 4 0.01
144 6 0.01
145 8 0.01
146 6 0.01
147 6 0.01
148 8 0.01
149 6 0.01
151 3 0.01
154 4 0.01
156 2 0.00
158 80 0.15
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (135 bp):
CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATAT
TGACAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAA
AATAG
Found at i:7837498 original size:180 final size:180
Alignment explanation
Indices: 7837183--7838016 Score: 744
Period size: 180 Copynumber: 4.5 Consensus size: 180
7837173 GGTTGAAAAC
*
7837183 AACAGATCTTGTCTTCCTGTATTGAAAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTAT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTAT
*
7837248 ATTGAGAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCA
66 ATTGAGAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATCA
7837313 AAAATAGCAGATCTTGTCATCCTATATTGGTAGCGAAGTAGATCGAAGAT
131 AAAATAGCAGATCTTGTCATCCTATATTGGTAGCGAAGTAGATCGAAGAT
* *
7837363 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAATATAGCAGATCTTGTCTTTCTAT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTAT
*
7837428 ATTG-GTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATT
66 ATTGAG-AGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATC
*
7837492 AAAAATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
130 AAAAATAGCAGATCTTGTCATCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * ** *
7837543 AACAGATCTTGTTTTTCTGTATTGACAGCGAAGTAGATCAAAGATAGGTAGCGAAGTAGATCAAA
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATA-GCA--GATCTTG-TC---
* ** * **** * * * * *
7837608 GATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAACATAGCAGATCTTGTCTTTC
59 --T-TCCTATATTG-AGAGC-GAAGTAG-ATCG-A--AGAT-----A-A-CAGATCTTGTCTTCC
* * * * * * * * *
7837673 TATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGA
108 TGTACTGGCAGCGAAATAGATCAAAAATAGCAGATCTTGTCATCCTATATTGGTAGCGAAGTAGA
* *
7837738 TCAAACAT
173 TCGAAGAT
* * ** * * **
7837746 AGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAATAGATCTTGTCTTCCTAT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTAT
* * * * * *
7837811 ACT-AGCAGCGAAGTAGAT-TAGAGATAGCAGATCTTGTCTTCATGTATTGGCAGC-AAAGTGGA
66 ATTGAG-AGCGAAGTAGATCGA-AGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAA-TAGA
* * * * * * * *
7837873 TCGAAGATAGCAGATCTTATCTTCCTATACTGGCAGTGAACTAGATC-AGAGAT
128 TCAAAAATAGCAGATCTTGTCATCCTATATTGGTAGCGAAGTAGATCGA-AGAT
* * * * * * * *
7837926 AGCAGATCTTGTCTTCTTGTATTGGCAGCAAAGTGGATCGAAGATAGCAGATCTTATCTTCCTGT
1 AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTAT
* * *
7837991 ACTG-GCAGCGAAGTGGATTGAAGATA
66 ATTGAG-AGCGAAGTAGATCGAAGATA
7838017 CAAGTCTTAT
Statistics
Matches: 535, Mismatches: 89, Indels: 60
0.78 0.13 0.09
Matches are distributed among these distances:
179 5 0.01
180 361 0.67
181 3 0.01
182 1 0.00
183 4 0.01
184 2 0.00
187 4 0.01
188 1 0.00
189 1 0.00
190 6 0.01
191 5 0.01
192 5 0.01
193 7 0.01
194 2 0.00
196 4 0.01
199 2 0.00
200 4 0.01
201 1 0.00
202 3 0.01
203 114 0.21
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (180 bp):
AACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTAT
ATTGAGAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATCA
AAAATAGCAGATCTTGTCATCCTATATTGGTAGCGAAGTAGATCGAAGAT
Found at i:7837631 original size:68 final size:68
Alignment explanation
Indices: 7837521--7837657 Score: 229
Period size: 68 Copynumber: 2.0 Consensus size: 68
7837511 TTCCTATATT
* * * *
7837521 GGTAGCGAAGTAGATCGAAGATAACAGATCTTGTTTTTCTGTATTGACAGCGAAGTAGATCAAAG
1 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAC
7837586 ATA
66 ATA
*
7837589 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAC
1 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAC
7837654 ATA
66 ATA
7837657 G
1 G
7837658 CAGATCTTGT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (68 bp):
GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAC
ATA
Found at i:7837679 original size:113 final size:113
Alignment explanation
Indices: 7837479--7837701 Score: 311
Period size: 113 Copynumber: 2.0 Consensus size: 113
7837469 CTGTACTGGC
* * * * *
7837479 AGCGAAATAGATTAAAAATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATA
1 AGCGAAATAGATCAAAAATAACAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAACATA
* * *
7837544 ACAGATCTTGTTTTTCTGTATTGACAGCGAAGTAGATCAAAGATAGGT
66 ACAGATCTTGTCTTTCTATATTGACAGCGAAATAGATCAAAGATAGGT
* * *
7837592 AGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAACATA
1 AGCGAAATAGATCAAAAATAACAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAACATA
* ** *
7837657 GCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATA
66 ACAGATCTTGTCTTTCTATATTGACAGCGAAATAGATCAAAGATA
7837702 ACAGATCTTG
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
113 95 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (113 bp):
AGCGAAATAGATCAAAAATAACAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAACATA
ACAGATCTTGTCTTTCTATATTGACAGCGAAATAGATCAAAGATAGGT
Found at i:7837721 original size:158 final size:158
Alignment explanation
Indices: 7837431--7837747 Score: 535
Period size: 158 Copynumber: 2.0 Consensus size: 158
7837421 TTTCTATATT
* *
7837431 GGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATTAAAA
1 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATCAAAA
* * *
7837496 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTTTTTCT
66 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
*
7837561 GTATTGACAGCGAAGTAGATCAAAGATA
131 GTATTGACAGCGAAGTAGATCAAACATA
* * *
7837589 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAC
1 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATCAAAA
*
7837654 ATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
66 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
*
7837719 GTATTGGCAGCGAAGTAGATCAAACATA
131 GTATTGACAGCGAAGTAGATCAAACATA
7837747 G
1 G
7837748 CAGATCTTGT
Statistics
Matches: 148, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
158 148 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (158 bp):
GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATCAAAA
ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
GTATTGACAGCGAAGTAGATCAAACATA
Found at i:7837738 original size:203 final size:203
Alignment explanation
Indices: 7837389--7837791 Score: 554
Period size: 203 Copynumber: 2.0 Consensus size: 203
7837379 CTGTATTGAC
* * * * * *
7837389 AGCGAAGTAGATCAAATATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAGTAGATCGAAGATA
1 AGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAACATA
* * *
7837454 ACAGATCTTGTCTTCCTGTACTGGCAGCGAAATAGATTAAAAATAGCAGATCTTGTCTTCCTATA
66 ACAGATCTTGTCTTCCTATACTGGCAGCGAAATAGATCAAAAATAACAGATCTTGTCTTCCTATA
* * * * * *
7837519 TTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTTTTTCTGTATTGACAGCGAAGTAGATCAA
131 TTGGCAGCGAAGTAGATCAAACATAACAGATCTTGTCTTCCTATATTGACAGCGAAGTAGATCAA
7837584 AGATAGGT
196 AGATAGGT
*
7837592 AGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAACATA
1 AGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAACATA
* * * * * * *
7837657 GCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCTGTA
66 ACAGATCTTGTCTTCCTATACTGGCAGCGAAATAGATCAAAAATAACAGATCTTGTCTTCCTATA
* ** * *
7837722 TTGGCAGCGAAGTAGATCAAACATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGA
131 TTGGCAGCGAAGTAGATCAAACATAACAGATCTTGTCTTCCTATATTGACAGCGAAGTAGATCAA
7837787 AGATA
196 AGATA
7837792 ATAGATCTTG
Statistics
Matches: 172, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
203 172 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (203 bp):
AGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAACATA
ACAGATCTTGTCTTCCTATACTGGCAGCGAAATAGATCAAAAATAACAGATCTTGTCTTCCTATA
TTGGCAGCGAAGTAGATCAAACATAACAGATCTTGTCTTCCTATATTGACAGCGAAGTAGATCAA
AGATAGGT
Found at i:7837781 original size:248 final size:248
Alignment explanation
Indices: 7837341--7837837 Score: 834
Period size: 248 Copynumber: 2.0 Consensus size: 248
7837331 ATCCTATATT
* *
7837341 GGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAT
1 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAC
*
7837406 ATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCT
66 ATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
*
7837471 GTACTGGCAGCGAAATAGATTAAAAATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGAT
131 GTACTGGCAGCGAAATAGATCAAAAATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGAT
* * * *
7837536 CGAAGATAACAGATCTTGTTTTTCTGTA-TTGACAGCGAAGTAGATCAAAGATA
196 CGAAGATAACAGATCTTGTCTTCCTATACTAG-CAGCGAAGTAGATCAAAGATA
*
7837589 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAC
1 GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAC
7837654 ATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
66 ATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
* * * *
7837719 GTATTGGCAGCGAAGTAGATCAAACATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGAT
131 GTACTGGCAGCGAAATAGATCAAAAATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGAT
* * *
7837784 CGAAGATAATAGATCTTGTCTTCCTATACTAGCAGCGAAGTAGATTAGAGATA
196 CGAAGATAACAGATCTTGTCTTCCTATACTAGCAGCGAAGTAGATCAAAGATA
7837837 G
1 G
7837838 CAGATCTTGT
Statistics
Matches: 232, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
248 230 0.99
249 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.30
Consensus pattern (248 bp):
GGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAC
ATAGCAGATCTTGTCTTTCTATATTGGTAGCGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
GTACTGGCAGCGAAATAGATCAAAAATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGAT
CGAAGATAACAGATCTTGTCTTCCTATACTAGCAGCGAAGTAGATCAAAGATA
Found at i:7839785 original size:22 final size:23
Alignment explanation
Indices: 7839758--7839800 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7839748 ATAATTCAAA
7839758 ATATACACACA-TTTTCTATAAT
1 ATATACACACACTTTTCTATAAT
* *
7839780 ATATACATACACTTTTTTATA
1 ATATACACACACTTTTCTATA
7839801 TTTTTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (23 bp):
ATATACACACACTTTTCTATAAT
Found at i:7840063 original size:45 final size:44
Alignment explanation
Indices: 7839983--7840069 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 44
7839973 TTTTTTTTCA
*
7839983 ATTCAACCAAACACAAGAATACTATTACAGTTCTATTACATTCC
1 ATTCAACCAAACACAAGAATACTATTACAGCTCTATTACATTCC
* *
7840027 ATTCAACCAAACA-ATTGAATTACTATTAC-GCCTCTATTCCATT
1 ATTCAACCAAACACA-AGAA-TACTATTACAG-CTCTATTACATT
7840070 ACAGCGAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
43 1 0.03
44 17 0.46
45 19 0.51
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32
Consensus pattern (44 bp):
ATTCAACCAAACACAAGAATACTATTACAGCTCTATTACATTCC
Found at i:7841684 original size:24 final size:24
Alignment explanation
Indices: 7841656--7841721 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
7841646 AGTATTATTT
*
7841656 AAATTTATCATACATTATAGCTTG
1 AAATTTATCATATATTATAGCTTG
* * *
7841680 AAATTTATTATATACTATAGTTTG
1 AAATTTATCATATATTATAGCTTG
*
7841704 AAACTTATCATATATTAT
1 AAATTTATCATATATTAT
7841722 TATTTTAGAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (24 bp):
AAATTTATCATATATTATAGCTTG
Found at i:7846287 original size:6 final size:6
Alignment explanation
Indices: 7846276--7846367 Score: 82
Period size: 6 Copynumber: 15.7 Consensus size: 6
7846266 CAATTAAAAA
* * **
7846276 AAAATC AAAATC AAAATC AAAATC AAAAATA AAAAT- AAAA-- AGAAGA
1 AAAATC AAAATC AAAATC AAAATC -AAAATC AAAATC AAAATC AAAATC
* * * *
7846322 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAATG AAAATG AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
7846368 AAGAGAGAAG
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
4 3 0.04
5 4 0.05
6 63 0.84
7 5 0.07
ACGTcount: A:0.71, C:0.09, G:0.07, T:0.14
Consensus pattern (6 bp):
AAAATC
Found at i:7848790 original size:129 final size:129
Alignment explanation
Indices: 7848560--7849580 Score: 1667
Period size: 129 Copynumber: 7.9 Consensus size: 129
7848550 TGAAGATTGT
* * *
7848560 AAGTCCTATATCCCTAGTCAGTAGTGGAATAGATTGGGAAATTACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
7848625 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* *
7848689 AAGTCCTATATCCCGGGTCAGCAGTGGAATAGGTTGGGAAATTACAAATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * * *
7848754 ATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGAAGATTTAAACCGC
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* *
7848818 AAGTCCTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTATAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * * *
7848883 ATAACAGG-GCAGATCGAGGACGGCGAATCCTATCTTCAAGTGTCAGGAAGCAGATTTAAGCCAC
66 ATAGC-GGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
*
7848947 AAG-CCTTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGC
1 AAGTCC-TATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGC
* *
7849010 AATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
65 AATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* *
7849075 AAGTCCTATATCCCTGGTCAGCAATGGAATAGGTTGGGAAATTACAGATCTTATCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* *
7849140 ATAGCAGAGCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTCAA-GAAGCAGATTTAAGCCAC
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGT-AAGGAAGCAGATTTAAGCCAC
*
7849204 AAGTCATATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * *
7849268 ATAGCGGAGCAGATTGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAACCAC
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
*
7849332 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCTCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * * * *
7849397 ATAACGGAGCAGATCGAGGACGACGAATCTTATCTTCAAGTGTGAGGAAGTAGATTTAAGCCAC
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
*
7849461 AAGTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
*
7849525 ATAGCGGAGCAAATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATT
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATT
7849581 ATTCCTGGTC
Statistics
Matches: 823, Mismatches: 61, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
127 4 0.00
128 305 0.37
129 510 0.62
130 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (129 bp):
AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
Found at i:7849115 original size:257 final size:257
Alignment explanation
Indices: 7848560--7849692 Score: 1741
Period size: 257 Copynumber: 4.5 Consensus size: 257
7848550 TGAAGATTGT
* * *
7848560 AAGTCCTATATCCCTAGTCAGTAGTGGAATAGATTGGGAAATTACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
*
7848625 ATAGC-GGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
66 ATAGCAGG-GCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* *
7848689 AAGTCCTATATCCCGGGTCAGCAGTGGAATAGGTTGGGAAATTACAAATCTTGTCTCCCTAAGCA
130 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGCA
* * *
7848754 ATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGAAGATTTAAACCGC
194 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
* *
7848818 AAGTCCTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTATAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * *
7848883 ATAACAGGGCAGATCGAGGACGGCGAATCCTATCTTCAAGTGTCAGGAAGCAGATTTAAGCCACA
66 ATAGCAGGGCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACA
*
7848948 AG-CCTTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
131 AGTCC-TATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
*
7849012 TAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
195 TAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
* *
7849075 AAGTCCTATATCCCTGGTCAGCAATGGAATAGGTTGGGAAATTACAGATCTTATCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
*
7849140 ATAGCAGAGCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTCAA-GAAGCAGATTTAAGCCAC
66 ATAGCAGGGCAGATCGAGGACGGCGAATCTTATCTTCAAGTGT-AAGGAAGCAGATTTAAGCCAC
*
7849204 AAGTCATATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
130 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
* *
7849269 TAGCGGAGCAGATTGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAACCAC
195 TAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
*
7849332 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCTCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * * *
7849397 ATAAC-GGAGCAGATCGAGGACGACGAATCTTATCTTCAAGTGTGAGGAAGTAGATTTAAGCCAC
66 ATAGCAGG-GCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
*
7849461 AAGTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
130 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
*
7849526 TAGCGGAGCAAATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAG-----------
195 TAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
*
7849578 -A-T--TAT-T-CCTGGTCAGCAATGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* ** * * * *
7849637 GTAGCAGAACAGATCAAGGACGGCAAATCTTATCTTCAAGAGTAAGGAAACAGATT
66 ATAGCAGGGCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATT
7849693 GAAACCGATA
Statistics
Matches: 817, Mismatches: 51, Indels: 32
0.91 0.06 0.04
Matches are distributed among these distances:
240 94 0.12
241 2 0.00
242 3 0.00
244 1 0.00
245 1 0.00
256 2 0.00
257 555 0.68
258 157 0.19
259 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (257 bp):
AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
ATAGCAGGGCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACA
AGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAAT
AGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
Found at i:7849197 original size:386 final size:386
Alignment explanation
Indices: 7848560--7849698 Score: 1685
Period size: 386 Copynumber: 3.0 Consensus size: 386
7848550 TGAAGATTGT
* *
7848560 AAGTCCTATATCCCTAGTCAGTAGTGGAATAGATTGGGAAATTACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
7848625 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACA
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACA
* *
7848690 AGTCCTATATCCCGGGTCAGCAGTGGAATAGGTTGGGAAATTACAAATCTTGTCTCCCTAAGCAA
131 AGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAA
* * *
7848755 TAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGAAGATTTAAACCGCAA
196 TAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCACAA
* * *
7848820 GTCCTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTATAGATCTTGTCTCCCTAAGCAAT
261 GTCATATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGCAAT
* * * *
7848885 AACAGG-GCAGATCGAGGACGGCGAATCCTATCTTCAAGTGTCAGGAAGCAGATTTAAGCCAC
325 AAC-GGAGCAGATCGAAGACGGCGAATCCTATCTTCAAGTGTAAGGAAACAGATTTAAACCAC
7848947 AAG-CCTTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGC
1 AAGTCC-TATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGC
* *
7849010 AATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCAC
65 AATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* *
7849075 AAGTCCTATATCCCTGGTCAGCAATGGAATAGGTTGGGAAATTACAGATCTTATCTCCCTAAGCA
130 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * *
7849140 ATAGCAGAGCAGATCGAGGACGGCGAATCTTATCTTCAAGTGTCAA-GAAGCAGATTTAAGCCAC
195 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGT-AAGGAAGCAGATTTAAACCAC
7849204 AAGTCATATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
259 AAGTCATATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAA
* * *
7849269 TAGCGGAGCAGATTGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAACCAC
324 TAACGGAGCAGATCGAAGACGGCGAATCCTATCTTCAAGTGTAAGGAAACAGATTTAAACCAC
* *
7849332 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCTCTAAGCA
1 AAGTCCTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
* * * * *
7849397 ATAACGGAGCAGATCGAGGACGACGAATCTTATCTTCAAGTGTGAGGAAGTAGATTTAAGCCACA
66 ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACA
*
7849462 AGTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGCAA
131 AGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAA
*
7849526 TAGCGGAGCAAATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAG------------A
196 TAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCACAA
* *
7849579 -T--TAT-T-CCTGGTCAGCAATGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAGT
261 GTCATATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGCAAT
* * * * * * *
7849639 AGCAGAACAGATC-AAGGACGGCAAATCTTATCTTCAAGAGTAAGGAAACAGATTGAAACC
325 AACGGAGCAGATCGAA-GACGGCGAATCCTATCTTCAAGTGTAAGGAAACAGATTTAAACC
7849699 GATAATCCTA
Statistics
Matches: 697, Mismatches: 47, Indels: 34
0.90 0.06 0.04
Matches are distributed among these distances:
368 30 0.04
369 76 0.11
370 3 0.00
372 1 0.00
373 1 0.00
384 4 0.01
385 182 0.26
386 362 0.52
387 38 0.05
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (386 bp):
AAGTCCTATATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
ATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACA
AGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAA
TAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACCACAA
GTCATATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAATA
ACGGAGCAGATCGAAGACGGCGAATCCTATCTTCAAGTGTAAGGAAACAGATTTAAACCAC
Found at i:7849669 original size:112 final size:111
Alignment explanation
Indices: 7849473--7849692 Score: 334
Period size: 112 Copynumber: 2.0 Consensus size: 111
7849463 GTCCTATATC
* * *
7849473 CCTGGTCAGCAGTAGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAAA
1 CCTGGTCAGCAATAGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAATAGCAGAACAAA
* * *
7849538 TCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTATT
66 TCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAACAGATTATT
* * *
7849584 CCTGGTCAGCAATGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCAGAACAG
1 CCTGGTCAGCAATAGAATAGGTTGGGAAA-TACAGATCTTGTCTCCCTAAGCAATAGCAGAACAA
7849649 ATC-AAGGACGGCAAATCTTATCTTCAAGAGTAAGGAAACAGATT
65 ATCGAA-GACGGCAAATCTTATCTTCAAGAGTAAGGAAACAGATT
7849693 GAAACCGATA
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
111 29 0.30
112 69 0.70
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (111 bp):
CCTGGTCAGCAATAGAATAGGTTGGGAAATACAGATCTTGTCTCCCTAAGCAATAGCAGAACAAA
TCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAACAGATTATT
Found at i:7849941 original size:44 final size:44
Alignment explanation
Indices: 7849876--7850204 Score: 181
Period size: 44 Copynumber: 7.5 Consensus size: 44
7849866 AAAGATGGCA
* * *
7849876 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTTGAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTGAT
* *
7849920 AATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCCGAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTGAT
* * * ** * * * * *
7849964 AATCCTACCTCCTTGAAATTGCAAAGGAACTGATTAAAACT-AC
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTGAT
* * * * * *
7850007 AGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGCAACCCG--
1 A-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGCTGAT
* * * *** ** *
7850051 --TCTTGTCTCCCT-AAGGTTGCAGTGGAACAGACACAAG-AAACC
1 AATCCTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGCTGA-T
* * * *
7850093 AATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAGAACCTCA-
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAAGCTGAT
** * *
7850137 AATCCTATCTCCCTGAAGTTGCAGTATAGCAGATCGAA-ATGAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTGAT
* *
7850180 AGATCTTATCTCTCTGAAGTTGCAG
1 A-ATCCTATCTCCCTGAAGTTGCAG
7850205 AGTAGTAGAT
Statistics
Matches: 209, Mismatches: 62, Indels: 28
0.70 0.21 0.09
Matches are distributed among these distances:
40 4 0.02
41 23 0.11
42 2 0.01
43 6 0.03
44 166 0.79
45 7 0.03
46 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (44 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTGAT
Found at i:7851896 original size:24 final size:24
Alignment explanation
Indices: 7851868--7851933 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
7851858 AGTATTATTT
*
7851868 AAATTTATCATACATTATAGCTTG
1 AAATTTATCATATATTATAGCTTG
* * *
7851892 AAATTTATTATATACTATAGTTTG
1 AAATTTATCATATATTATAGCTTG
*
7851916 AAACTTATCATATATTAT
1 AAATTTATCATATATTAT
7851934 TATTTTAGAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (24 bp):
AAATTTATCATATATTATAGCTTG
Found at i:7853328 original size:17 final size:15
Alignment explanation
Indices: 7853281--7853338 Score: 59
Period size: 14 Copynumber: 3.9 Consensus size: 15
7853271 AGTTAGAAAA
7853281 AAAATA-AAAAATTT
1 AAAATATAAAAATTT
* *
7853295 AAAAGA-AAACA-TT
1 AAAATATAAAAATTT
7853308 AAAATTATAAATAATTT
1 AAAA-TATAAA-AATTT
7853325 AAAATATAAAAATT
1 AAAATATAAAAATT
7853339 ATTAAAAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
13 6 0.17
14 10 0.28
15 7 0.19
16 7 0.19
17 6 0.17
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (15 bp):
AAAATATAAAAATTT
Found at i:7853334 original size:16 final size:16
Alignment explanation
Indices: 7853306--7853338 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7853296 AAAGAAAACA
7853306 TTAAAATTATAAATAAT
1 TTAAAATTATAAA-AAT
7853323 TTAAAA-TATAAAAAT
1 TTAAAATTATAAAAAT
7853338 T
1 T
7853339 ATTAAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 6 0.38
17 6 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TTAAAATTATAAAAAT
Found at i:7853343 original size:17 final size:18
Alignment explanation
Indices: 7853305--7853345 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7853295 AAAAGAAAAC
7853305 ATTAAAATTATAAATAAT
1 ATTAAAATTATAAATAAT
7853323 -TTAAAA-TATAAA-AATT
1 ATTAAAATTATAAATAA-T
7853339 ATTAAAA
1 ATTAAAA
7853346 ACTATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 2 0.10
16 7 0.33
17 12 0.57
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATTAAAATTATAAATAAT
Found at i:7853677 original size:18 final size:17
Alignment explanation
Indices: 7853638--7853695 Score: 75
Period size: 16 Copynumber: 3.5 Consensus size: 17
7853628 TTTATAAAAT
7853638 TATTTTTATTTTTTAT-
1 TATTTTTATTTTTTATA
*
7853654 TGTTTTTATTTTTTATA
1 TATTTTTATTTTTTATA
*
7853671 TAATTTTTATGTTTTATA
1 T-ATTTTTATTTTTTATA
7853689 -ATTTTTA
1 TATTTTTA
7853696 AATTATTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 22 0.59
17 1 0.03
18 14 0.38
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TATTTTTATTTTTTATA
Found at i:7853703 original size:27 final size:27
Alignment explanation
Indices: 7853647--7853703 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7853637 TTATTTTTAT
* *
7853647 TTTTTATTGTTTTTATTTTTTATATAA
1 TTTTTATTGTTTTTAATTTTTAAATAA
*
7853674 TTTTTA-TGTTTTATAATTTTTAAATTA
1 TTTTTATTGTTTT-TAATTTTTAAATAA
7853701 TTT
1 TTT
7853704 AAAATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (27 bp):
TTTTTATTGTTTTTAATTTTTAAATAA
Found at i:7853722 original size:18 final size:17
Alignment explanation
Indices: 7853672--7853725 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
7853662 TTTTTTATAT
*
7853672 AATTTTT-ATGTTTTAT
1 AATTTTTAATGTTTTAA
7853688 AATTTTTAAAT-TATTTAA
1 AATTTTT-AATGT-TTTAA
7853706 AATTTTTAATGGTTTTAA
1 AATTTTTAAT-GTTTTAA
7853724 AA
1 AA
7853726 ACTATAACCA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
16 7 0.22
17 4 0.12
18 20 0.62
19 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (17 bp):
AATTTTTAATGTTTTAA
Found at i:7859233 original size:47 final size:46
Alignment explanation
Indices: 7859117--7859239 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 46
7859107 ATATATATAA
* **
7859117 ATATATTTGTTATGCATGAAAATGAATTAATCTATAGCTGAATGTAT
1 ATATATTTGTTATGCATG-AAATGAATTAAACTATAGCCAAATGTAT
* * * * *
7859164 ATGTAATTGTTATGTAGAGAAATGAATTAAACTATGGCCAAATGTAT
1 ATATATTTGTTATGCA-TGAAATGAATTAAACTATAGCCAAATGTAT
*
7859211 ATATATTTGTTATGCATTGAAATAAATTA
1 ATATATTTGTTATGCA-TGAAATGAATTA
7859240 TTTGAAATTA
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
47 60 0.98
48 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (46 bp):
ATATATTTGTTATGCATGAAATGAATTAAACTATAGCCAAATGTAT
Found at i:7859286 original size:161 final size:160
Alignment explanation
Indices: 7859100--7859532 Score: 716
Period size: 155 Copynumber: 2.7 Consensus size: 160
7859090 AAATTAACTA
*
7859100 CGAATGTATATATATAAATATATTTGTTATGCATGAAAATGAATTAATCTATAGCTGAATGTATA
1 CGAATGTATATATAT--ATATATTTGTTATACATG-AAATGAATTAATCTATAGCTGAATGTATA
* * *
7859165 TGTAATTGTTATGTAGAGAAATGAATTAAACTATGGCCAAATGTATATATATTTGTTATGCATTG
63 TGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATATTTGTTATGCATTG
7859230 AAATAAATTATTTGAAATTACATAGGTTATGGC
128 AAATAAATTATTTGAAATTACATAGGTTATGGC
7859263 CGAATGTATATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTATATG
1 CGAATGTATATATATATATATTTGTTATACA-TGAAATGAATTAATCTATAGCTGAATGTATATG
7859328 TAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATG--TATATATTTGTTATGCATTGAA
65 TAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATATTTGTTATGCATTGAA
7859391 ATAAATTATTTGAAATTACATAGGTTATGGC
130 ATAAATTATTTGAAATTACATAGGTTATGGC
* * *
7859422 TGAATG----TATATCTATATTTGTTATACGTTGAAATGAATTAATCTATAGCTGAATGTATATG
1 CGAATGTATATATATATATATTTGTTATAC-ATGAAATGAATTAATCTATAGCTGAATGTATATG
7859483 TAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATAT
65 TAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATAT
7859533 ATAGTTATTT
Statistics
Matches: 259, Mismatches: 7, Indels: 14
0.93 0.03 0.05
Matches are distributed among these distances:
155 93 0.36
157 7 0.03
159 58 0.22
161 84 0.32
162 2 0.01
163 15 0.06
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (160 bp):
CGAATGTATATATATATATATTTGTTATACATGAAATGAATTAATCTATAGCTGAATGTATATGT
AATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATATTTGTTATGCATTGAAA
TAAATTATTTGAAATTACATAGGTTATGGC
Found at i:7859394 original size:45 final size:45
Alignment explanation
Indices: 7859277--7859398 Score: 154
Period size: 47 Copynumber: 2.7 Consensus size: 45
7859267 TGTATATATA
* * * *
7859277 TATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATG
1 TATATATTTGTTATGCATTGAAATAAATTAAACTATAGCCGAATG
* ** *
7859322 TATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATG
1 TATA--TATTTGTTATGCATTGAAATAAATTAAACTATAGCCGAATG
7859369 TATATATTTGTTATGCATTGAAATAAATTA
1 TATATATTTGTTATGCATTGAAATAAATTA
7859399 TTTGAAATTA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
45 27 0.42
47 37 0.58
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (45 bp):
TATATATTTGTTATGCATTGAAATAAATTAAACTATAGCCGAATG
Found at i:7859476 original size:108 final size:107
Alignment explanation
Indices: 7859314--7859508 Score: 250
Period size: 108 Copynumber: 1.8 Consensus size: 107
7859304 TTAATCTATA
* * * *
7859314 GCTGAATGTATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATA-TATTT
1 GCTGAATGTATATCTAATTGTTATACAGAGAAATAAATTAAACTATAGCCGAATGTATAGTAATT
**
7859378 GTTATGCATTGAAATAAATTATTTGAAATTACATAGGTTATG
66 GTTATGCAGAGAAATAAATTATTTGAAATTACATAGGTTATG
* * * *
7859420 GCTGAATGTATATCTATATTTGTTATAC-GTTGAAATGAATTAATCTATAGCTGAATGTATATGT
1 GCTGAATGTATATCTA-A-TTGTTATACAG-AGAAATAAATTAAACTATAGCCGAATGTATA-GT
7859484 AATTGTTATGCAGAGAAATAAATTA
62 AATTGTTATGCAGAGAAATAAATTA
7859509 AACTATGGCC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
106 15 0.20
107 2 0.03
108 34 0.46
110 23 0.31
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.38
Consensus pattern (107 bp):
GCTGAATGTATATCTAATTGTTATACAGAGAAATAAATTAAACTATAGCCGAATGTATAGTAATT
GTTATGCAGAGAAATAAATTATTTGAAATTACATAGGTTATG
Found at i:7859508 original size:47 final size:49
Alignment explanation
Indices: 7859420--7859534 Score: 128
Period size: 47 Copynumber: 2.4 Consensus size: 49
7859410 ATAGGTTATG
* * *
7859420 GCTGAATGTATATCTATATTTGTTATACGTTGAAATGAATTAATCTATA
1 GCTGAATGTATATCTATATTTGTTATACGTAGAAATAAATTAAACTATA
* * *
7859469 GCTGAATGTATATGTA-A-TTGTTATGCAG-AGAAATAAATTAAACTATG
1 GCTGAATGTATATCTATATTTGTTATAC-GTAGAAATAAATTAAACTATA
* *
7859516 GCCGAATGTATATATATAT
1 GCTGAATGTATATCTATAT
7859535 AGTTATTTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
47 37 0.67
48 3 0.05
49 15 0.27
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (49 bp):
GCTGAATGTATATCTATATTTGTTATACGTAGAAATAAATTAAACTATA
Found at i:7859940 original size:47 final size:46
Alignment explanation
Indices: 7859824--7859946 Score: 156
Period size: 47 Copynumber: 2.6 Consensus size: 46
7859814 ATATATATAA
* *
7859824 ATATATTTGTTATGCATGAAAATGAATTAATCTATAGCTGAATGTAT
1 ATATATTTGTTATGCATG-AAATGAATTAAACTATAGCCGAATGTAT
* * * *
7859871 ATGTAATTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATGTAT
1 ATATATTTGTTATGCA-TGAAATGAATTAAACTATAGCCGAATGTAT
*
7859918 ATATATTTGTTATGCATTGAAATAAATTA
1 ATATATTTGTTATGCA-TGAAATGAATTA
7859947 TTTGAAATTA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 63 0.98
48 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (46 bp):
ATATATTTGTTATGCATGAAATGAATTAAACTATAGCCGAATGTAT
Found at i:7859993 original size:161 final size:161
Alignment explanation
Indices: 7859810--7860270 Score: 766
Period size: 161 Copynumber: 2.8 Consensus size: 161
7859800 TTAACTACGT
*
7859810 ATGTATATATATAAATATATTTGTTATGCA-TGAAAATGAATTAATCTATAGCTGAATGTATATG
1 ATGTATATATAT--ATATATTTGTTATACATTG-AAATGAATTAATCTATAGCTGAATGTATATG
7859874 TAATTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATGTATATATATTTGTTATGCATTGAA
63 TAATTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATGTATATATATTTGTTATGCATTGAA
*
7859939 ATAAATTATTTGAAATTACATAGGTTATGGCTGA
128 ATAAATTATTTGAAATTACATAGGTTATGGCCGA
*
7859973 ATGTATATATATATATATTTGTTATACATTGAAATGAATTAAACTATAGCTGAATGTATATGTAA
1 ATGTATATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTATATGTAA
* *
7860038 TTGTTATGCAGAGAAATGAATTAAGCTATGGCCGAATCTATATATATTTGTTATGCATTGAAATA
66 TTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATGTATATATATTTGTTATGCATTGAAATA
7860103 AATTATTTGAAATTACATAGGTTATGGCCGA
131 AATTATTTGAAATTACATAGGTTATGGCCGA
7860134 ATG--TATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTATATGTAA
1 ATGTATATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTATATGTAA
* *
7860197 TTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATATATATTTGTTATACATTGA
66 TTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATG----TATATATATTTGTTATGCATTGA
*
7860262 AATGAATTA
127 AATAAATTA
7860271 ATCTATAGCT
Statistics
Matches: 282, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
159 94 0.33
161 144 0.51
162 2 0.01
163 42 0.15
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (161 bp):
ATGTATATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTATATGTAA
TTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATGTATATATATTTGTTATGCATTGAAATA
AATTATTTGAAATTACATAGGTTATGGCCGA
Found at i:7860101 original size:47 final size:47
Alignment explanation
Indices: 7859982--7860107 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
7859972 AATGTATATA
* * *
7859982 TATATATATTTGTTATACATTGAAATGAATTAAACTATAGCTGAATG
1 TATATATATTTGTTATGCATTGAAATGAATTAAACTATAGCCGAATC
* * ** * *
7860029 TATATGTAATTGTTATGCAGAGAAATGAATTAAGCTATGGCCGAATC
1 TATATATATTTGTTATGCATTGAAATGAATTAAACTATAGCCGAATC
*
7860076 TATATATATTTGTTATGCATTGAAATAAATTA
1 TATATATATTTGTTATGCATTGAAATGAATTA
7860108 TTTGAAATTA
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (47 bp):
TATATATATTTGTTATGCATTGAAATGAATTAAACTATAGCCGAATC
Found at i:7860187 original size:51 final size:51
Alignment explanation
Indices: 7860129--7860368 Score: 280
Period size: 47 Copynumber: 4.9 Consensus size: 51
7860119 ATAGGTTATG
* *
7860129 GCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATA
1 GCCGAATGTATATATATATATTTGTTATGCATTGAAATGAATTAAACTATA
* * ** * *
7860180 GCTGAATG--TATATGTA-A-TTGTTATGCAGAGAAATAAATTAAACTATG
1 GCCGAATGTATATATATATATTTGTTATGCATTGAAATGAATTAAACTATA
* *
7860227 GCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATA
1 GCCGAATGTATATATATATATTTGTTATGCATTGAAATGAATTAAACTATA
* * ** *
7860278 GCTGAATG--TATATGTA-A-TTGTTATGCAGAGAAATGAATTAAACTATG
1 GCCGAATGTATATATATATATTTGTTATGCATTGAAATGAATTAAACTATA
*
7860325 GCCGAATGTATATATATATATTTGTTATGCATTGAAATAAATTA
1 GCCGAATGTATATATATATATTTGTTATGCATTGAAATGAATTA
7860369 TTTGAAGTTA
Statistics
Matches: 153, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
47 63 0.41
48 2 0.01
49 28 0.18
50 2 0.01
51 58 0.38
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.38
Consensus pattern (51 bp):
GCCGAATGTATATATATATATTTGTTATGCATTGAAATGAATTAAACTATA
Found at i:7860236 original size:98 final size:98
Alignment explanation
Indices: 7860125--7860368 Score: 461
Period size: 98 Copynumber: 2.5 Consensus size: 98
7860115 TTACATAGGT
7860125 TATGGCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTA
1 TATGGCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTA
7860190 TATGTAATTGTTATGCAGAGAAATAAATTAAAC
66 TATGTAATTGTTATGCAGAGAAATAAATTAAAC
7860223 TATGGCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTA
1 TATGGCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTA
*
7860288 TATGTAATTGTTATGCAGAGAAATGAATTAAAC
66 TATGTAATTGTTATGCAGAGAAATAAATTAAAC
* *
7860321 TATGGCCGAATGTATATATATATATTTGTTATGCATTGAAATAAATTA
1 TATGGCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTA
7860369 TTTGAAGTTA
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 143 1.00
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (98 bp):
TATGGCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTA
TATGTAATTGTTATGCAGAGAAATAAATTAAAC
Found at i:7860241 original size:707 final size:704
Alignment explanation
Indices: 7858828--7860244 Score: 2600
Period size: 707 Copynumber: 2.0 Consensus size: 704
7858818 CTATAGTAAA
7858828 AGTTATTTGGAATATTTTATGTTTTGTGCAAAAAGGGACTAAATTGTGAAAAATGTAAAATGTTA
1 AGTTATTTGGAATATTTTATGTTTTGTGCAAAAAGGGACTAAATTGTGAAAAATGTAAAATGTTA
7858893 GGGGCTAAATTGTAATTTTCCCATTTATGTGAATTTAGGCTAAATTTGATGGAATAATGTTTAAA
66 GGGGCTAAATTGTAATTTTCCCATTTATGTGAATTTAGGCTAAATTTGATGGAATAATGTTTAAA
*
7858958 TAATTTTAATTTGAATTTATTTAGATCAAGGATTAAAGAAGTCGAATTTGGATCGGGGAAAGACA
131 TAATTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCGAATTTGGATCGGGGAAAGACA
* *
7859023 AAAGTGGTCGAATAGCCGAATTAACAGTCGATGACATCTAAGGTACGTCAATAAGCGTTTAAATG
196 AAAGTGGTCGAATAGCCGAATTAACAGTCGACGACATCTAAGGTAAGTCAATAAGCGTTTAAATG
*
7859088 TTAAATTAACTACGAATGTATATATATAAATATATTTGTTATGCATGAAAATGAATTAATCTATA
261 CTAAATTAACTACGAATGTATATATATAAATATATTTGTTATGCATGAAAATGAATTAATCTATA
*
7859153 GCTGAATGTATATGTAATTGTTATGTAGAGAAATGAATTAAACTATGGCCAAATGTATATATATT
326 GCTGAATGTATATGTAATTGTTATGCAGAGAAATGAATTAAACTATGGCCAAATGTATATATATT
7859218 TGTTATGCATTGAAATAAATTATTTGAAATTACATAGGTTATGGCCGAATGTATATATATATATA
391 TGTTATGCATTGAAATAAATTATTTGAAATTACATAGGTTATGGCCGAATGTATATATATATATA
*
7859283 TTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGTATATGTAATTGTTATGCAGAGAAAT
456 TTTGTTATACATTGAAATGAATTAAACTATAGCTGAATGTATATGTAATTGTTATGCAGAGAAAT
*
7859348 AAATTAAACTATGGCCGAATGTATATATTTGTTATGCATTGAAATAAATTATTTGAAATTACATA
521 AAATTAAACTATGGCCGAATATATATATTTGTTATGCATTGAAATAAATTATTTGAAATTACATA
* * *
7859413 GGTTATGGCTGAATGTATATCTATATTTGTTATACGTTGAAATGAATTAATCTATAGCTGAATGT
586 GGTTATGGCCGAATGTATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGT
7859478 ATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATATAT
651 ATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATG---ATATATAT
7859535 AGTTATTTGGAATATTTTATGTTTTGTGCAAAAAGGGACTAAATTGTGAAAAATGTAAAATGTTA
1 AGTTATTTGGAATATTTTATGTTTTGTGCAAAAAGGGACTAAATTGTGAAAAATGTAAAATGTTA
7859600 GGGGCTAAATTGTAATTTTCCCATTTATGTGAATTTAGGCTAAATTTGATGGAATAATGTTTAAA
66 GGGGCTAAATTGTAATTTTCCCATTTATGTGAATTTAGGCTAAATTTGATGGAATAATGTTTAAA
7859665 TAATTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCGAATTTGGATCGGGGAAAGACA
131 TAATTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCGAATTTGGATCGGGGAAAGACA
* * *
7859730 AAAGTGGTTGAATAGTCGAATTAACAGTCGACGACATCTGAGGTAAGTCAATAAGCGTTTAAATG
196 AAAGTGGTCGAATAGCCGAATTAACAGTCGACGACATCTAAGGTAAGTCAATAAGCGTTTAAATG
*
7859795 CTAAATTAACTACGTATGTATATATATAAATATATTTGTTATGCATGAAAATGAATTAATCTATA
261 CTAAATTAACTACGAATGTATATATATAAATATATTTGTTATGCATGAAAATGAATTAATCTATA
*
7859860 GCTGAATGTATATGTAATTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATGTATATATATT
326 GCTGAATGTATATGTAATTGTTATGCAGAGAAATGAATTAAACTATGGCCAAATGTATATATATT
*
7859925 TGTTATGCATTGAAATAAATTATTTGAAATTACATAGGTTATGGCTGAATGTATATATATATATA
391 TGTTATGCATTGAAATAAATTATTTGAAATTACATAGGTTATGGCCGAATGTATATATATATATA
7859990 TTTGTTATACATTGAAATGAATTAAACTATAGCTGAATGTATATGTAATTGTTATGCAGAGAAAT
456 TTTGTTATACATTGAAATGAATTAAACTATAGCTGAATGTATATGTAATTGTTATGCAGAGAAAT
* *
7860055 GAATTAAGCTATGGCCGAATCTATATATATTTGTTATGCATTGAAATAAATTATTTGAAATTACA
521 AAATTAAACTATGGCCGAA--TATATATATTTGTTATGCATTGAAATAAATTATTTGAAATTACA
7860120 TAGGTTATGGCCGAATGTATATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGA
584 TAGGTTATGGCCGAATG--TATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGA
7860185 ATGTATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGTATATATAT
647 ATGTATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATG-ATATATAT
7860244 A
1 A
7860245 TATTTGTTAT
Statistics
Matches: 688, Mismatches: 18, Indels: 6
0.97 0.03 0.01
Matches are distributed among these distances:
707 525 0.76
709 69 0.10
711 94 0.14
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.37
Consensus pattern (704 bp):
AGTTATTTGGAATATTTTATGTTTTGTGCAAAAAGGGACTAAATTGTGAAAAATGTAAAATGTTA
GGGGCTAAATTGTAATTTTCCCATTTATGTGAATTTAGGCTAAATTTGATGGAATAATGTTTAAA
TAATTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCGAATTTGGATCGGGGAAAGACA
AAAGTGGTCGAATAGCCGAATTAACAGTCGACGACATCTAAGGTAAGTCAATAAGCGTTTAAATG
CTAAATTAACTACGAATGTATATATATAAATATATTTGTTATGCATGAAAATGAATTAATCTATA
GCTGAATGTATATGTAATTGTTATGCAGAGAAATGAATTAAACTATGGCCAAATGTATATATATT
TGTTATGCATTGAAATAAATTATTTGAAATTACATAGGTTATGGCCGAATGTATATATATATATA
TTTGTTATACATTGAAATGAATTAAACTATAGCTGAATGTATATGTAATTGTTATGCAGAGAAAT
AAATTAAACTATGGCCGAATATATATATTTGTTATGCATTGAAATAAATTATTTGAAATTACATA
GGTTATGGCCGAATGTATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAATGT
ATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCCGAATGATATATAT
Found at i:7862228 original size:5 final size:5
Alignment explanation
Indices: 7862218--7862242 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7862208 AGATTGCACC
7862218 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
7862243 GAATTTAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:7875568 original size:44 final size:43
Alignment explanation
Indices: 7875476--7875723 Score: 184
Period size: 44 Copynumber: 5.6 Consensus size: 43
7875466 TACCATAGCG
* *
7875476 AATCT-TATCTCTTTGAAGTTGCAAGTGGAGCAGATT-AAATATATA
1 AATCTATATCTC--TGAAGTTGC-AGTGGAGCAGATTGAAACA-ACA
*
7875521 AATCTAATATCTCTGAAGTTGCAGTAGAGCAGATTGAAACAACA
1 AATCT-ATATCTCTGAAGTTGCAGTGGAGCAGATTGAAACAACA
** * * *
7875565 AATCT-TATCTCCCTGAAGTTGCAGTGGAATAGACTAAAAGCCAC-
1 AATCTATATCT--CTGAAGTTGCAGTGGAGCAGATTGAAA-CAACA
* * * *
7875609 AATCT-TGTCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
1 AATCTATATCT--CTGAAGTTGCAGTGGAGCAGATTGAAACAACA
* * *
7875653 AATCT-TATCTTCCTGAAGTTGCGGTGGAGCAGATTGAAGCGACA
1 AATCTATATC-T-CTGAAGTTGCAGTGGAGCAGATTGAAACAACA
* *
7875697 AATTCTATACCTCTGAAGTTGAAGTGG
1 AA-TCTATATCTCTGAAGTTGCAGTGG
7875724 GTTGGATTAA
Statistics
Matches: 169, Mismatches: 24, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
42 5 0.03
43 3 0.02
44 126 0.75
45 26 0.15
46 3 0.02
47 6 0.04
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (43 bp):
AATCTATATCTCTGAAGTTGCAGTGGAGCAGATTGAAACAACA
Found at i:7875713 original size:88 final size:89
Alignment explanation
Indices: 7875531--7875723 Score: 221
Period size: 88 Copynumber: 2.2 Consensus size: 89
7875521 AATCTAATAT
* * *
7875531 CTCTGAAGTTGCAGTAGAGCAGATTGAAACAACAAATCTTATCTCCCTGAAGTTGCAGTGGAATA
1 CTCTGAAGTTGAAGTGGAGCAGATTGAAACAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACA
* * *
7875596 GACTAAAAGCCACAATCTTGTCTC
66 GACTAAAAGCCACAATATTCTATC
* * * * * *
7875620 C-CTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAATCTTATCTTCCTGAAGTTGCGGTGGAGCA
1 CTCTGAAGTTGAAGTGGAGCAGATTGAAACAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACA
** *
7875684 GA-TTGAAGCGACAA-ATTCTATAC
66 GACTAAAAGCCACAATATTCTAT-C
7875707 CTCTGAAGTTGAAGTGG
1 CTCTGAAGTTGAAGTGG
7875724 GTTGGATTAA
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
86 4 0.05
87 11 0.13
88 71 0.82
89 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (89 bp):
CTCTGAAGTTGAAGTGGAGCAGATTGAAACAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACA
GACTAAAAGCCACAATATTCTATC
Found at i:7877576 original size:6 final size:6
Alignment explanation
Indices: 7877565--7877598 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
7877555 TGATGTGATA
7877565 ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTA
1 ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTA
7877599 TAATTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTAAT
Found at i:7877604 original size:18 final size:18
Alignment explanation
Indices: 7877562--7877617 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
7877552 TGATGATGTG
7877562 ATAATTAATATTAATATT
1 ATAATTAATATTAATATT
7877580 A-ATATTAATATTAATATT
1 ATA-ATTAATATTAATATT
* *
7877598 ATAATT-ATGTTATTATT
1 ATAATTAATATTAATATT
7877615 ATA
1 ATA
7877618 GTATTCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 13 0.38
18 20 0.59
19 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATAATTAATATTAATATT
Found at i:7880096 original size:10 final size:9
Alignment explanation
Indices: 7880075--7880151 Score: 65
Period size: 9 Copynumber: 8.8 Consensus size: 9
7880065 TCATGCTCTC
7880075 TTTTTA-AA
1 TTTTTATAA
7880083 TTTTTATGAA
1 TTTTTAT-AA
7880093 TTTTTATATA
1 TTTTTATA-A
7880103 TTTTT-TAA
1 TTTTTATAA
7880111 -TTTT-TAA
1 TTTTTATAA
*
7880118 TTTTGA-ATA
1 TTTTTATA-A
*
7880127 TTTTTAAAA
1 TTTTTATAA
*
7880136 TTTTTAAAA
1 TTTTTATAA
7880145 TTTTTAT
1 TTTTTAT
7880152 TAGGCTGACA
Statistics
Matches: 59, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.12
8 11 0.19
9 25 0.42
10 16 0.27
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7880127 original size:24 final size:26
Alignment explanation
Indices: 7880075--7880142 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 26
7880065 TCATGCTCTC
* *
7880075 TTTTTAAATTTTTATGAATTTTTATATA
1 TTTTTAAAATTTT-T-AATTTTGATATA
*
7880103 TTTTT-TAATTTTTAATTTTGA-ATA
1 TTTTTAAAATTTTTAATTTTGATATA
7880127 TTTTTAAAATTTTTAA
1 TTTTTAAAATTTTTAA
7880143 AATTTTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 8 0.23
25 16 0.46
26 1 0.03
27 5 0.14
28 5 0.14
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (26 bp):
TTTTTAAAATTTTTAATTTTGATATA
Found at i:7880319 original size:14 final size:15
Alignment explanation
Indices: 7880300--7880328 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7880290 AATAATGATT
7880300 AAATTG-AAATTAAA
1 AAATTGAAAATTAAA
7880314 AAATTGAAAATTAAA
1 AAATTGAAAATTAAA
7880329 TTAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATTGAAAATTAAA
Found at i:7881765 original size:56 final size:56
Alignment explanation
Indices: 7881675--7881832 Score: 226
Period size: 56 Copynumber: 2.8 Consensus size: 56
7881665 AGTAGTTATG
* * *
7881675 TAGGAATCAAATTGCTAAAAGATAATACCCCATAATAATATCTTATAATATCTCGT
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTATAACATCTCAT
* * * *
7881731 TAGGAATCAAATTGCTAAGAGATAATATCTCATAATAACATCCTATAACATCTCAT
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTATAACATCTCAT
* *
7881787 TAGGAATTAAATTGCTAAAAAGATAAAATCCCATAATAATATCTTA
1 TAGGAATCAAATTGCT-AAAAGATAATATCCCATAATAATATCTTA
7881833 ACACCCCCTC
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
56 64 0.73
57 24 0.27
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTATAACATCTCAT
Found at i:7883719 original size:247 final size:247
Alignment explanation
Indices: 7883283--7883772 Score: 953
Period size: 247 Copynumber: 2.0 Consensus size: 247
7883273 TTATAATTAC
7883283 ATTAATTATAATATAATTTCGGTAAACCATATATTTATTTGAATTCATATGCTAACCTCATTATG
1 ATTAATTATAATATAATTTCGGTAAACCATATATTTATTTGAATTCATATGCTAACCTCATTATG
7883348 TGTACAACAACCTTGTACATAATGTGTTGGAAATCGAATTAAATTAATTCTATAATTAATTTAAT
66 TGTACAACAACCTTGTACATAATGTGTTGGAAATCGAATTAAATTAATTCTATAATTAATTTAAT
7883413 TCAAGTGACACCTAAAAACAATACCAACTATGATTTATTCCATTCATTTTAACTATAGGGTGTGA
131 TCAAGTGACACCTAAAAACAATACCAACTATGATTTATTCCATTCATTTTAACTATAGGGTGTGA
7883478 CCCTGTAGGTTCTTGTAACATTAGCAGTAATACTAGAACGATTCCAATTTAA
196 CCCTGTAGGTTCTTGTAACATTAGCAGTAATACTAGAACGATTCCAATTTAA
7883530 ATTAATTATAATATAATTTCGGTAAACCATATATTTATTTGAATTCATATGCTAACCTCATTATG
1 ATTAATTATAATATAATTTCGGTAAACCATATATTTATTTGAATTCATATGCTAACCTCATTATG
7883595 TGTACAACAACCTTGTACATAATGTGTTGGAAATCGAATTAAATTAATTCTATAATTAATTTAAT
66 TGTACAACAACCTTGTACATAATGTGTTGGAAATCGAATTAAATTAATTCTATAATTAATTTAAT
* *
7883660 TCAAGTGACACCTAAAAACAATACCAACTATGGTTTATTCCGTTCATTTTAACTATAGGGTGTGA
131 TCAAGTGACACCTAAAAACAATACCAACTATGATTTATTCCATTCATTTTAACTATAGGGTGTGA
*
7883725 CCCTGTAGGTTCTTGTAACGTTAGCAGTAATACTAGAACGATTCCAAT
196 CCCTGTAGGTTCTTGTAACATTAGCAGTAATACTAGAACGATTCCAAT
7883773 GTTACAAACA
Statistics
Matches: 240, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
247 240 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (247 bp):
ATTAATTATAATATAATTTCGGTAAACCATATATTTATTTGAATTCATATGCTAACCTCATTATG
TGTACAACAACCTTGTACATAATGTGTTGGAAATCGAATTAAATTAATTCTATAATTAATTTAAT
TCAAGTGACACCTAAAAACAATACCAACTATGATTTATTCCATTCATTTTAACTATAGGGTGTGA
CCCTGTAGGTTCTTGTAACATTAGCAGTAATACTAGAACGATTCCAATTTAA
Found at i:7895976 original size:61 final size:61
Alignment explanation
Indices: 7895899--7896081 Score: 366
Period size: 61 Copynumber: 3.0 Consensus size: 61
7895889 TACAATCTTC
7895899 AGTTGAAAATGTTGATTGGATGAGAGAGTTCATACTAAATATGCTAGAGTTGTTGTAACAA
1 AGTTGAAAATGTTGATTGGATGAGAGAGTTCATACTAAATATGCTAGAGTTGTTGTAACAA
7895960 AGTTGAAAATGTTGATTGGATGAGAGAGTTCATACTAAATATGCTAGAGTTGTTGTAACAA
1 AGTTGAAAATGTTGATTGGATGAGAGAGTTCATACTAAATATGCTAGAGTTGTTGTAACAA
7896021 AGTTGAAAATGTTGATTGGATGAGAGAGTTCATACTAAATATGCTAGAGTTGTTGTAACAA
1 AGTTGAAAATGTTGATTGGATGAGAGAGTTCATACTAAATATGCTAGAGTTGTTGTAACAA
7896082 TTAATTGATT
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 122 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.33
Consensus pattern (61 bp):
AGTTGAAAATGTTGATTGGATGAGAGAGTTCATACTAAATATGCTAGAGTTGTTGTAACAA
Found at i:7903878 original size:4 final size:4
Alignment explanation
Indices: 7903869--7903902 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
7903859 TATCAAAATT
7903869 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
7903903 GAATAATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:7904858 original size:21 final size:20
Alignment explanation
Indices: 7904818--7904860 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
7904808 AAAGTCTAAA
*
7904818 TTATATTATTATATTTTGCT
1 TTATATTATTATATTATGCT
7904838 TTATATATATTAT-TTGATGCT
1 TTATAT-TATTATATT-ATGCT
7904859 TT
1 TT
7904861 TAACCAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.63
Consensus pattern (20 bp):
TTATATTATTATATTATGCT
Found at i:7910047 original size:43 final size:41
Alignment explanation
Indices: 7909981--7910180 Score: 204
Period size: 43 Copynumber: 4.7 Consensus size: 41
7909971 TAAATTCAGT
* *
7909981 GATATGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAA
* * * **
7910023 GATACGGTGGAATCAACACTTAGCAACCACCTTTATATTCAGT
1 GATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAATCAAA
*
7910066 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAA
* * *
7910108 TATACGGTGGAATCAGCACTTAACAACCACCTTTAGAATCAATA
1 GATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAATCAA-A
* * *
7910152 -ATTCAGGGAATCAGCACTTAACAACCCCT
1 GATACGGGGAATCAGCACTTAGCAACCCCT
7910181 CGGGGAATCT
Statistics
Matches: 133, Mismatches: 19, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
41 8 0.06
42 55 0.41
43 59 0.44
44 11 0.08
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (41 bp):
GATACGGGGAATCAGCACTTAGCAACCCCTTTACAATCAAA
Found at i:7910087 original size:85 final size:85
Alignment explanation
Indices: 7909945--7910180 Score: 332
Period size: 85 Copynumber: 2.8 Consensus size: 85
7909935 CCGTTACTTA
* * *
7909945 GTGGATTCAACATTTAGCAACCACC-TTAAATTCAGTGATATGGGGAATCAGCACATAGCAACCC
1 GTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACCC
7910009 CTTTCACAATCAAAGATACG
66 CTTTCACAATCAAAGATACG
*
7910029 GTGGAATCAACACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACCC
1 GTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACCC
*
7910094 CTTTCACAATCAAATATACG
66 CTTTCACAATCAAAGATACG
* * * * * * * *
7910114 GTGGAATCAGCACTTAACAACCACCTTTAGAA-TCAATAATTCAGGGAATCAGCACTTAACAACC
1 GTGGAATCAACACTTAGCAACCACCTTTA-AATTCAGTGATACGGGGAATCAGCACATAGCAACC
7910178 CCT
65 CCT
7910181 CGGGGAATCT
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
84 23 0.17
85 112 0.82
86 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.23
Consensus pattern (85 bp):
GTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACCC
CTTTCACAATCAAAGATACG
Found at i:7910090 original size:42 final size:43
Alignment explanation
Indices: 7909959--7910177 Score: 202
Period size: 42 Copynumber: 5.2 Consensus size: 43
7909949 ATTCAACATT
* *
7909959 TAGCAACCACC-TTA-AATTCAGTGATATGG-GGAATCAGCACA
1 TAGCAACCACCTTTACAA-TCAATGATACGGTGGAATCAGCACA
* * *
7910000 TAGCAACC-CCTTTCACAATCAAAGATACGGTGGAATCAACACT
1 TAGCAACCACCTTT-ACAATCAATGATACGGTGGAATCAGCACA
* * *
7910043 TAGCAACCACCTTTATATTCAGTGATACGG-GGAATCAGCACA
1 TAGCAACCACCTTTACAATCAATGATACGGTGGAATCAGCACA
*
7910085 TAGCAACC-CCTTTCACAATCAAAT-ATACGGTGGAATCAGCACT
1 TAGCAACCACCTTT-ACAATC-AATGATACGGTGGAATCAGCACA
* * * * * *
7910128 TAACAACCACCTTTAGAATCAATAATTCAG-GGAATCAGCACT
1 TAGCAACCACCTTTACAATCAATGATACGGTGGAATCAGCACA
*
7910170 TAACAACC
1 TAGCAACC
7910178 CCTCGGGGAA
Statistics
Matches: 149, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
40 2 0.01
41 15 0.10
42 61 0.41
43 61 0.41
44 10 0.07
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (43 bp):
TAGCAACCACCTTTACAATCAATGATACGGTGGAATCAGCACA
Found at i:7911080 original size:18 final size:19
Alignment explanation
Indices: 7911047--7911082 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7911037 AAATAGACGG
7911047 GAAAACAAATAAAATACCA
1 GAAAACAAATAAAATACCA
*
7911066 GAAAATAAA-AAAATACC
1 GAAAACAAATAAAATACC
7911083 TCCTCATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.69, C:0.14, G:0.06, T:0.11
Consensus pattern (19 bp):
GAAAACAAATAAAATACCA
Found at i:7912556 original size:37 final size:37
Alignment explanation
Indices: 7912510--7912589 Score: 151
Period size: 37 Copynumber: 2.2 Consensus size: 37
7912500 TGAGACCAAC
*
7912510 AAAGAAGATACTTGGTATAGATATTCTCTGAGATAGA
1 AAAGTAGATACTTGGTATAGATATTCTCTGAGATAGA
7912547 AAAGTAGATACTTGGTATAGATATTCTCTGAGATAGA
1 AAAGTAGATACTTGGTATAGATATTCTCTGAGATAGA
7912584 AAAGTA
1 AAAGTA
7912590 AGTAAATTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (37 bp):
AAAGTAGATACTTGGTATAGATATTCTCTGAGATAGA
Found at i:7915770 original size:13 final size:13
Alignment explanation
Indices: 7915753--7915818 Score: 64
Period size: 13 Copynumber: 5.0 Consensus size: 13
7915743 TAATTGATTG
7915753 ATATAATCATTTT
1 ATATAATCATTTT
*
7915766 GTAT-ATCTATTTCT
1 ATATAATC-ATTT-T
* *
7915780 ATATAACTGA-TTC
1 ATATAA-TCATTTT
7915793 ATATAATCATTTT
1 ATATAATCATTTT
7915806 ATATAATCATTTT
1 ATATAATCATTTT
7915819 CCACCTGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
12 5 0.12
13 28 0.67
14 6 0.14
15 2 0.05
16 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.52
Consensus pattern (13 bp):
ATATAATCATTTT
Found at i:7915771 original size:40 final size:40
Alignment explanation
Indices: 7915726--7915810 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
7915716 TACACAATTC
* *
7915726 ATATATCTATTTCCATATAATTGATTGATATAATCATTTT
1 ATATATCTATTTCCATATAACTGATTCATATAATCATTTT
* *
7915766 GTATATCTATTTCTATATAACTGATTCATATAATCATTTT
1 ATATATCTATTTCCATATAACTGATTCATATAATCATTTT
7915806 ATATA
1 ATATA
7915811 ATCATTTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (40 bp):
ATATATCTATTTCCATATAACTGATTCATATAATCATTTT
Found at i:7916960 original size:11 final size:11
Alignment explanation
Indices: 7916946--7916989 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
7916936 AGATAAGTAT
7916946 TATTTTATTAA
1 TATTTTATTAA
*
7916957 TATTTTAATGAAA
1 TATTTT-AT-TAA
*
7916970 TATTTTATTAT
1 TATTTTATTAA
7916981 TATTTTATT
1 TATTTTATT
7916990 TAGTATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 16 0.57
12 4 0.14
13 8 0.29
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7918613 original size:21 final size:21
Alignment explanation
Indices: 7918587--7918648 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
7918577 ATGAGAGCTA
7918587 AACGGAAACCCATAAGGGTTG
1 AACGGAAACCCATAAGGGTTG
* *** * *
7918608 AACGGAAGCTTGTAAGAGCTG
1 AACGGAAACCCATAAGGGTTG
*
7918629 AACGGAAACCCATAGGGGTT
1 AACGGAAACCCATAAGGGTT
7918649 AAACTAAAGC
Statistics
Matches: 28, Mismatches: 13, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.16
Consensus pattern (21 bp):
AACGGAAACCCATAAGGGTTG
Found at i:7918617 original size:42 final size:42
Alignment explanation
Indices: 7918570--7918719 Score: 183
Period size: 42 Copynumber: 3.6 Consensus size: 42
7918560 GAAGGGAACA
* * * *
7918570 GAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTGAACG
1 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
** *
7918612 GAAGCTTGTAAGAGCTGAACGGAAACCCATAGGGGTTAAACT
1 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
* * * *
7918654 AAAGCTCAAAAGAGCTGAATGGAAACCAATAAGGGTTAAACT
1 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
* *
7918696 GAAGCTCAAAAGAGCTGAATGGAA
1 GAAGCTCATAAGAGCTGAACGGAA
7918720 GCTCGTAAGA
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 93 1.00
ACGTcount: A:0.41, C:0.16, G:0.27, T:0.16
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
Found at i:7918722 original size:21 final size:21
Alignment explanation
Indices: 7918655--7918740 Score: 77
Period size: 21 Copynumber: 4.1 Consensus size: 21
7918645 GGTTAAACTA
*
7918655 AAGCTCAAAAGAGCTGAATGG
1 AAGCTCAAAAGAGCTAAATGG
* * *
7918676 AAAC-CAATAAGGGTTAAACT-G
1 AAGCTCAA-AAGAGCTAAA-TGG
*
7918697 AAGCTCAAAAGAGCTGAATGG
1 AAGCTCAAAAGAGCTAAATGG
**
7918718 AAGCTCGTAAGAGCTAAATGG
1 AAGCTCAAAAGAGCTAAATGG
7918739 AA
1 AA
7918741 AGTAAACAAG
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
20 4 0.08
21 42 0.84
22 4 0.08
ACGTcount: A:0.44, C:0.14, G:0.26, T:0.16
Consensus pattern (21 bp):
AAGCTCAAAAGAGCTAAATGG
Found at i:7926613 original size:68 final size:68
Alignment explanation
Indices: 7926538--7926686 Score: 172
Period size: 68 Copynumber: 2.2 Consensus size: 68
7926528 CATAGTGAAA
* * ** * *
7926538 CTATGGTCTTGCAATAGATGAAGTCATGTTTACTATCCTGGTTGACTTCATATGTTGTCATAGCC
1 CTATGGTCTTACAATAGATGAAGCCATGTTTACTATCCTGGCGGACTTCATATATTGCCATAGCC
7926603 CAG
66 CAG
* * * ** * *
7926606 CTTTGGTCTTACACTATATGGTGCCATGTTTACTGTCCTGGCGGACTTTATATATTGCCATAGCC
1 CTATGGTCTTACAATAGATGAAGCCATGTTTACTATCCTGGCGGACTTCATATATTGCCATAGCC
*
7926671 TAG
66 CAG
7926674 CTATGGTCTTACA
1 CTATGGTCTTACA
7926687 CTCTTATAGG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (68 bp):
CTATGGTCTTACAATAGATGAAGCCATGTTTACTATCCTGGCGGACTTCATATATTGCCATAGCC
CAG
Found at i:7926687 original size:68 final size:68
Alignment explanation
Indices: 7926562--7926688 Score: 182
Period size: 68 Copynumber: 1.9 Consensus size: 68
7926552 TAGATGAAGT
** * * *
7926562 CATGTTTACTATCCTGGTTGACTTCATATGTTGTCATAGCCCAGCTTTGGTCTTACACTATATGG
1 CATGTTTACTATCCTGGCGGACTTCATATATTGCCATAGCCCAGCTATGGTCTTACACTATATGG
7926627 TGC
66 TGC
* * *
7926630 CATGTTTACTGTCCTGGCGGACTTTATATATTGCCATAGCCTAGCTATGGTCTTACACT
1 CATGTTTACTATCCTGGCGGACTTCATATATTGCCATAGCCCAGCTATGGTCTTACACT
7926689 CTTATAGGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 51 1.00
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (68 bp):
CATGTTTACTATCCTGGCGGACTTCATATATTGCCATAGCCCAGCTATGGTCTTACACTATATGG
TGC
Found at i:7930203 original size:49 final size:50
Alignment explanation
Indices: 7930048--7930228 Score: 147
Period size: 49 Copynumber: 3.7 Consensus size: 50
7930038 GGGATGAGAC
* ** * * * **
7930048 CCCATGTAAGACCATGTCTGGGACATGGTGTTGGTACTGAGC-TGAGAGGT
1 CCCATGTAAGACCATATCTGGGACATGGCATTTGCACTGA-CAGGAGAACT
** * * *
7930098 CCCCCGTAAGACCATATCTGGGACATGGCA-TGGCACTGATATGAGAACT
1 CCCATGTAAGACCATATCTGGGACATGGCATTTGCACTGACAGGAGAACT
* * *
7930147 CCTATGTAAGACCATATCTGGGATATGGCATTTGCAGT-ACAGGA-AACAT
1 CCCATGTAAGACCATATCTGGGACATGGCATTTGCACTGACAGGAGAAC-T
* *
7930196 CCCATGTATGACCATGTCTGGGACATGGC-TTTG
1 CCCATGTAAGACCATATCTGGGACATGGCATTTG
7930229 GCATATTATT
Statistics
Matches: 107, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
48 7 0.07
49 70 0.65
50 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (50 bp):
CCCATGTAAGACCATATCTGGGACATGGCATTTGCACTGACAGGAGAACT
Found at i:7943158 original size:46 final size:46
Alignment explanation
Indices: 7943077--7943218 Score: 169
Period size: 46 Copynumber: 3.1 Consensus size: 46
7943067 CAGGGCTTAA
* * *
7943077 TATTATTGTATTCTCGAGTTCACAACTTATACAGGAGCTCAAAACC
1 TATTATTGTATTCTCGAGTTCACAACATATGCAGGAGCTCGAAACC
* * * *
7943123 TATTTTTGTATTCTCAAGTTCGCAACATATGCAGGAGCTCGGAACC
1 TATTATTGTATTCTCGAGTTCACAACATATGCAGGAGCTCGAAACC
* * * *
7943169 TATTCA-TGTATTCTTGAGTCCACAACATACGTAGGAGCTCGAAACC
1 TATT-ATTGTATTCTCGAGTTCACAACATATGCAGGAGCTCGAAACC
7943215 TATT
1 TATT
7943219 CCTATATTCT
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (46 bp):
TATTATTGTATTCTCGAGTTCACAACATATGCAGGAGCTCGAAACC
Found at i:7943229 original size:46 final size:46
Alignment explanation
Indices: 7943108--7943233 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
7943098 ACAACTTATA
* ** * * * *
7943108 CAGGAGCTCAAAACCTATTTTTGTATTCTCAAGTTCGCAACATATG
1 CAGGAGCTCGAAACCTATTCATGTATTCTTAAGTCCACAACATACG
* *
7943154 CAGGAGCTCGGAACCTATTCATGTATTCTTGAGTCCACAACATACG
1 CAGGAGCTCGAAACCTATTCATGTATTCTTAAGTCCACAACATACG
* * *
7943200 TAGGAGCTCGAAACCTATTCCTATATTCTTAAGT
1 CAGGAGCTCGAAACCTATTCATGTATTCTTAAGT
7943234 TTGTAATATA
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (46 bp):
CAGGAGCTCGAAACCTATTCATGTATTCTTAAGTCCACAACATACG
Found at i:7944718 original size:11 final size:11
Alignment explanation
Indices: 7944702--7944732 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7944692 ATTTTTCATA
7944702 CATATTCACTG
1 CATATTCACTG
*
7944713 CATATTCATTG
1 CATATTCACTG
7944724 CATATTCAC
1 CATATTCAC
7944733 ATCGTTAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.39
Consensus pattern (11 bp):
CATATTCACTG
Found at i:7944831 original size:36 final size:34
Alignment explanation
Indices: 7944757--7944831 Score: 80
Period size: 34 Copynumber: 2.1 Consensus size: 34
7944747 ATAATCACTA
* *
7944757 TCACATTGTATGAAAACATACCACATTTTTACTG
1 TCACATGGTATGAAAACATACCACATTTCTACTG
* *
7944791 TCACATGGTATGAATATCATACCCACATATTCT-CTT
1 TCACATGGTATGAA-AACATA-CCACAT-TTCTACTG
7944827 TCACA
1 TCACA
7944832 ACAACCATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
34 13 0.38
35 5 0.15
36 13 0.38
37 3 0.09
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (34 bp):
TCACATGGTATGAAAACATACCACATTTCTACTG
Found at i:7956979 original size:56 final size:51
Alignment explanation
Indices: 7956908--7957080 Score: 170
Period size: 50 Copynumber: 3.3 Consensus size: 51
7956898 AGATCCTATA
* ** *
7956908 TAAGACCATGGCTGGGACATGGCATTGGCATTATTGAGATTATGAGAGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCA--ACCGAG---ATGAGAGGTCCCACG
* *
7956964 TAAGACCATGTCTGGGACATGGCGTTGGC-ACCGAGATGAGAGGTCCCCCG
1 TAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGGTCCCACG
* * * * * *
7957014 GAAGACCATGTCTGGGACATGGCATGGGC-ACCAATATGAGAGCTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGGTCCCACG
*
7957064 TAAGACCATATCTGGGA
1 TAAGACCATGTCTGGGA
7957081 TATGAAATTG
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
50 70 0.69
53 4 0.04
56 27 0.27
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (51 bp):
TAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGGTCCCACG
Found at i:7957004 original size:50 final size:50
Alignment explanation
Indices: 7956949--7957080 Score: 183
Period size: 50 Copynumber: 2.6 Consensus size: 50
7956939 TATTGAGATT
* * *
7956949 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAG
** * *
7956999 ATGAGAGGTCCCCCGGAAGACCATGTCTGGGACATGGCATGGGCACCAAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAG
* *
7957049 ATGAGAGCTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGA
7957081 TATGAAATTG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.27, C:0.23, G:0.31, T:0.19
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAG
Found at i:7962579 original size:50 final size:50
Alignment explanation
Indices: 7962451--7962697 Score: 203
Period size: 50 Copynumber: 4.8 Consensus size: 50
7962441 ATTTGGCTAA
* * **
7962451 AGAGATCCCATGTAAGACCATATCTGGGACATGGCATTGGTATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG---CACCGA-G--ATG
* *
7962507 AGAGGTCCCATGTAATACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * *
7962557 AGAGGTCCC-TCGTAAGACCATGTTTGGGACATGAAATGGGCACCGATATG
1 AGAGGTCCCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
7962607 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * *
7962656 AAACATCCCATGTCAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
7962698 TGTTATTATC
Statistics
Matches: 158, Mismatches: 30, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 76 0.48
51 1 0.01
52 1 0.01
53 4 0.03
56 36 0.23
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:7968056 original size:50 final size:50
Alignment explanation
Indices: 7967991--7968169 Score: 177
Period size: 50 Copynumber: 3.6 Consensus size: 50
7967981 GGTAAAGAGA
* * * **
7967991 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
* *
7968041 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
* * * * * *
7968091 TCCCATGTAAGACCATATCTGAGATATGACATTGGG-A--GTACATGA-AAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCA-TGGGCACCG-AGATGAGAAC
*
7968139 ATCCCATGTAAGACCATGTCTGGGACATGGC
1 -TCCCACGTAAGACCATGTCTGGGACATGGC
7968170 TTTGGCATGT
Statistics
Matches: 108, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 4 0.04
49 31 0.29
50 69 0.64
51 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.21
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
Found at i:7977302 original size:21 final size:21
Alignment explanation
Indices: 7977251--7977307 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
7977241 TTCAATCTGA
* *
7977251 TTTTCAAACTCTC--TTTCTT
1 TTTTCACACTCTCTTTTTCAT
* *
7977270 TTTTCTCACTCTNTTTTTCAT
1 TTTTCACACTCTCTTTTTCAT
*
7977291 TTTTCACGCTCTCTTTT
1 TTTTCACACTCTCTTTT
7977308 ATTTTTAAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
19 10 0.34
21 19 0.66
ACGTcount: A:0.11, C:0.26, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTTCACACTCTCTTTTTCAT
Found at i:7977907 original size:54 final size:54
Alignment explanation
Indices: 7977802--7977958 Score: 212
Period size: 54 Copynumber: 2.9 Consensus size: 54
7977792 ATTCCTTGAT
*
7977802 GAATAAGAATC-TCGATATGGAATCT-TT-TCAAGAAATCATTGGACATTTGGCTC
1 GAATAAGAATCAT-GATATGG-ATCTCTTCTCAAGAAATCATTAGACATTTGGCTC
* * *
7977855 GAATAGGAATCATGATATGGATCTCTTCTTAAGAAATCATTAGACGTTTGGCTC
1 GAATAAGAATCATGATATGGATCTCTTCTCAAGAAATCATTAGACATTTGGCTC
* * *
7977909 GAATAAGAATAACGATATGGAACTCTTCTCAAGAAATCATTAGACATTTG
1 GAATAAGAATCATGATATGGATCTCTTCTCAAGAAATCATTAGACATTTG
7977959 ACTCCTTAAC
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
52 4 0.04
53 19 0.21
54 68 0.75
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (54 bp):
GAATAAGAATCATGATATGGATCTCTTCTCAAGAAATCATTAGACATTTGGCTC
Found at i:7981975 original size:21 final size:21
Alignment explanation
Indices: 7981949--7981991 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7981939 TAATTTATAC
**
7981949 AACTAGAATTCTGCTCGCACT
1 AACTAGAATTAAGCTCGCACT
7981970 AACTAGAATTAAGCTCGCACT
1 AACTAGAATTAAGCTCGCACT
7981991 A
1 A
7981992 TGTAGTGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (21 bp):
AACTAGAATTAAGCTCGCACT
Found at i:7983022 original size:16 final size:16
Alignment explanation
Indices: 7982982--7983022 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
7982972 AACAAATAAT
*
7982982 TTAAAATTTATAAAAA
1 TTAAAATTAATAAAAA
*
7982998 TTCAAAATTAATCAAAA
1 TT-AAAATTAATAAAAA
7983015 TTAAAATT
1 TTAAAATT
7983023 CAAAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAAATTAATAAAAA
Found at i:7983043 original size:23 final size:23
Alignment explanation
Indices: 7982994--7983043 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7982984 AAAATTTATA
* *
7982994 AAAATTCAAAATTAATCAAAATT
1 AAAATTCAAAAATAATAAAAATT
7983017 AAAATTCAAAAAT-ATAAAAATT
1 AAAATTCAAAAATAATAAAAATT
7983039 CAAAA
1 -AAAA
7983044 AAAAAATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAATTCAAAAATAATAAAAATT
Found at i:7983637 original size:21 final size:21
Alignment explanation
Indices: 7983595--7983638 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7983585 AAATTGTAAA
* * * *
7983595 AATTCAAAAGTTGAAGAGTTG
1 AATTAAAAACTTGAAAACTTG
7983616 AATTAAAAACTTGAAAACTTG
1 AATTAAAAACTTGAAAACTTG
7983637 AA
1 AA
7983639 CAACCAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.16, T:0.27
Consensus pattern (21 bp):
AATTAAAAACTTGAAAACTTG
Found at i:7987684 original size:20 final size:20
Alignment explanation
Indices: 7987659--7987701 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7987649 GCTTGTACGG
*
7987659 GTTTGCACTTCGGTGCCTCT
1 GTTTGCACTTCGGTGCATCT
*
7987679 GTTTGCACTTTGGTGCATCT
1 GTTTGCACTTCGGTGCATCT
7987699 GTT
1 GTT
7987702 AGCATTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.07, C:0.23, G:0.26, T:0.44
Consensus pattern (20 bp):
GTTTGCACTTCGGTGCATCT
Found at i:7987710 original size:20 final size:20
Alignment explanation
Indices: 7987663--7987710 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7987653 GTACGGGTTT
* * *
7987663 GCACTTCGGTGCCTCTGTTT
1 GCACTTTGGTGCATCTGTTA
7987683 GCACTTTGGTGCATCTGTTA
1 GCACTTTGGTGCATCTGTTA
*
7987703 GCATTTTG
1 GCACTTTG
7987711 ATGCTCACTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.10, C:0.23, G:0.25, T:0.42
Consensus pattern (20 bp):
GCACTTTGGTGCATCTGTTA
Found at i:7990269 original size:26 final size:26
Alignment explanation
Indices: 7990247--7990337 Score: 137
Period size: 26 Copynumber: 3.5 Consensus size: 26
7990237 AGTACTTGTC
*
7990247 AAAAGCACTTTTCCACAACACTTTTT
1 AAAAGCACTTTTCCACAGCACTTTTT
* **
7990273 AAAAGAACTTTTCCACAGCAAATTTT
1 AAAAGCACTTTTCCACAGCACTTTTT
7990299 AAAAGCACTTTTCCACAGCACTTTTT
1 AAAAGCACTTTTCCACAGCACTTTTT
*
7990325 AAAAGTACTTTTC
1 AAAAGCACTTTTC
7990338 AAAAGCAAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
AAAAGCACTTTTCCACAGCACTTTTT
Found at i:7990282 original size:13 final size:13
Alignment explanation
Indices: 7990226--7990342 Score: 67
Period size: 13 Copynumber: 9.0 Consensus size: 13
7990216 TCTTAAACCA
7990226 AACTTTTCAAAAG
1 AACTTTTCAAAAG
* *
7990239 TACTTGTCAAAAG
1 AACTTTTCAAAAG
* *
7990252 CACTTTTCCACAA-
1 AACTTTT-CAAAAG
* *
7990265 CACTTTTTAAAAG
1 AACTTTTCAAAAG
* *
7990278 AACTTTTCCACAG
1 AACTTTTCAAAAG
*
7990291 CAAATTTT-AAAAG
1 -AACTTTTCAAAAG
* * *
7990304 CACTTTTCCACAG
1 AACTTTTCAAAAG
* *
7990317 CACTTTTTAAAAG
1 AACTTTTCAAAAG
*
7990330 TACTTTTCAAAAG
1 AACTTTTCAAAAG
7990343 CAAGGCTAAA
Statistics
Matches: 77, Mismatches: 23, Indels: 8
0.71 0.21 0.07
Matches are distributed among these distances:
12 8 0.10
13 59 0.77
14 10 0.13
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (13 bp):
AACTTTTCAAAAG
Found at i:7990344 original size:26 final size:26
Alignment explanation
Indices: 7990227--7990344 Score: 112
Period size: 26 Copynumber: 4.5 Consensus size: 26
7990217 CTTAAACCAA
* * *
7990227 ACTTTTCAAAAGTACTTGTCAAAAGC
1 ACTTTTCAAAAGCACTTTTTAAAAGC
* *
7990253 ACTTTTCCACAA-CACTTTTTAAAAGA
1 ACTTTT-CAAAAGCACTTTTTAAAAGC
* * **
7990279 ACTTTTCCACAGCAAATTTTAAAAGC
1 ACTTTTCAAAAGCACTTTTTAAAAGC
* * *
7990305 ACTTTTCCACAGCACTTTTTAAAAGT
1 ACTTTTCAAAAGCACTTTTTAAAAGC
7990331 ACTTTTCAAAAGCA
1 ACTTTTCAAAAGCA
7990345 AGGCTAAACT
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
25 2 0.03
26 68 0.92
27 4 0.05
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTTTTAAAAGC
Found at i:7990345 original size:52 final size:52
Alignment explanation
Indices: 7990247--7990345 Score: 162
Period size: 52 Copynumber: 1.9 Consensus size: 52
7990237 AGTACTTGTC
* *
7990247 AAAAGCACTTTTCCACAACACTTTTTAAAAGAACTTTTCCACAGCAAATTTT
1 AAAAGCACTTTTCCACAACACTTTTTAAAAGAACTTTTCAAAAGCAAATTTT
* *
7990299 AAAAGCACTTTTCCACAGCACTTTTTAAAAGTACTTTTCAAAAGCAA
1 AAAAGCACTTTTCCACAACACTTTTTAAAAGAACTTTTCAAAAGCAA
7990346 GGCTAAACTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.31
Consensus pattern (52 bp):
AAAAGCACTTTTCCACAACACTTTTTAAAAGAACTTTTCAAAAGCAAATTTT
Found at i:7999157 original size:79 final size:78
Alignment explanation
Indices: 7999055--7999277 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
7999045 GCTCCTCGTT
* *
7999055 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
7999120 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
7999135 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
7999199 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
7999213 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
7999276 GA
63 GA
7999278 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:7999172 original size:39 final size:40
Alignment explanation
Indices: 7999055--7999277 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
7999045 GCTCCTCGTT
* *
7999055 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
7999095 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
7999135 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
7999174 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
7999213 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
7999254 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
7999278 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:8001741 original size:23 final size:23
Alignment explanation
Indices: 8001715--8001795 Score: 92
Period size: 23 Copynumber: 3.5 Consensus size: 23
8001705 TAATGTTCAC
8001715 GAACATGTTCATTTAAC-TTAATT
1 GAACATGTTCA-TTAACATTAATT
* **
8001738 GAACATGTTCACTAACATTAAAC
1 GAACATGTTCATTAACATTAATT
* *
8001761 AAACATGTTCATGAACATATAATT
1 GAACATGTTCATTAACAT-TAATT
8001785 GAACATGTTCA
1 GAACATGTTCA
8001796 CGAACAACGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 4 0.09
23 30 0.64
24 13 0.28
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (23 bp):
GAACATGTTCATTAACATTAATT
Found at i:8010784 original size:41 final size:41
Alignment explanation
Indices: 8010739--8010820 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
8010729 ATATTATATA
** *
8010739 TTATATTAGTTTT-AATAATTTTTACCTTTTAAAAATTAATT
1 TTATATT-GTTTTGAATAATTTTTAAATTTTAAAAAATAATT
* *
8010780 TTATATTTTTTTGAATATTTTTTAAATTTTAAAAAATAATT
1 TTATATTGTTTTGAATAATTTTTAAATTTTAAAAAATAATT
8010821 AATTGTTGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 4 0.11
41 31 0.89
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (41 bp):
TTATATTGTTTTGAATAATTTTTAAATTTTAAAAAATAATT
Found at i:8011408 original size:15 final size:16
Alignment explanation
Indices: 8011388--8011420 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8011378 TTATAATTCA
*
8011388 ATTTTAAATTTAT-TT
1 ATTTTAAAATTATATT
8011403 ATTTTAAAATTATATT
1 ATTTTAAAATTATATT
8011419 AT
1 AT
8011421 AACATCTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTTAAAATTATATT
Found at i:8015376 original size:71 final size:71
Alignment explanation
Indices: 8015260--8015404 Score: 254
Period size: 71 Copynumber: 2.0 Consensus size: 71
8015250 AACTAACTCA
* * *
8015260 AATATTCACCCATCTACTACTGTATTGTGACCTGAAGTTTCTCCTTGAATCGGCAAAAAGGTGAT
1 AATATTCACCCATCTACTACTATATTGTGACCTGAAGTTTCTCCTTGAACCGGCAAAAAGGCGAT
8015325 GAGGAT
66 GAGGAT
*
8015331 AATATTCACCCATCTACTCCTATATTGTGACCTGAAGTTTCTCCTTGAACCGGCAAAAAGGCGAT
1 AATATTCACCCATCTACTACTATATTGTGACCTGAAGTTTCTCCTTGAACCGGCAAAAAGGCGAT
8015396 GAGGAT
66 GAGGAT
8015402 AAT
1 AAT
8015405 GGTTTAGTGA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (71 bp):
AATATTCACCCATCTACTACTATATTGTGACCTGAAGTTTCTCCTTGAACCGGCAAAAAGGCGAT
GAGGAT
Found at i:8018888 original size:354 final size:354
Alignment explanation
Indices: 8018182--8018876 Score: 1259
Period size: 354 Copynumber: 2.0 Consensus size: 354
8018172 AACACATTTT
* *
8018182 TTAAATGCAACAATTTACAAGAAATAGAAATAGTGCTATGACCCAAATGCACAATATGAACACAA
1 TTAAATGCAACAATTTACAAGAAATAGAAATAATGCTATGACCCAAACGCACAATATGAACACAA
*
8018247 GTACCATCACCCATAAGTAGAGGAATTTTACCTAAATATTGAGTCGAATTATTCAATATAGAAGC
66 GTACCATCACCCATAAGTAGAGGAATTTTACCTAAATATTGACTCGAATTATTCAATATAGAAGC
*
8018312 CTCCTGACATACGTGGTTGGTGGCACCAGAGTCAAAGTACCAAACGAACATCTTGGTAGATGTAG
131 CTCCTGACATACGTGGTTGGTGGCACCAGAGTCAAAGTACCAAACGAACATCTTAGTAGATGTAG
8018377 AAGGCAATGACATAGACAGCTGAGTAGAAACACCACTTGATAAACCAGGCCTAGCAGAATTTATA
196 AAGGCAATGACATAGACAGCTGAGTAGAAACACCACTTGATAAACCAGGCCTAGCAGAATTTATA
*
8018442 GCAACAGGCCCAACAAACTCAAGAGAAAAAAAGCCAAAAGTAAACCCAGCCGAATTAATGTCAAT
261 GCAACAGGCCCAACAAACTCAAGAGAAAAAAAGCCAAAAGCAAACCCAGCCGAATTAATGTCAAT
*
8018507 AGACCCAAAAATAGGCCCATCTAAATTAG
326 AGACCCAAAAACAGGCCCATCTAAATTAG
*
8018536 TTAAATGCAACAATTTACGAGAAATAGAAATAATGCTATGACCCAAACGCACAATATGAACACAA
1 TTAAATGCAACAATTTACAAGAAATAGAAATAATGCTATGACCCAAACGCACAATATGAACACAA
8018601 GTACCATCACCCATAAGTAGAGGAATTTTACCTAAATATTGACTCGAATTATTCAATATAGAAGC
66 GTACCATCACCCATAAGTAGAGGAATTTTACCTAAATATTGACTCGAATTATTCAATATAGAAGC
8018666 CTCCTGACATACGTGGTTGGTGGCACCAGAGTCGAAA-TACCAAACGAACATCTTAGTAGATGTA
131 CTCCTGACATACGTGGTTGGTGGCACCAGAGTC-AAAGTACCAAACGAACATCTTAGTAGATGTA
*
8018730 GAAGGCAATGACATAGACAGCTGAGTAGAAACACCACTTGATAAACCATGCCTAGCAGAATTTAT
195 GAAGGCAATGACATAGACAGCTGAGTAGAAACACCACTTGATAAACCAGGCCTAGCAGAATTTAT
* *
8018795 AGCAACAGGCTCAACAAACTCAAGAGCAAAAAAA-CCAAAAGCAAACCCAGCTGAATTAATGTCA
260 AGCAACAGGCCCAACAAACTCAAGAG-AAAAAAAGCCAAAAGCAAACCCAGCCGAATTAATGTCA
*
8018859 ATAGGCCCAAAAACAGGC
324 ATAGACCCAAAAACAGGC
8018877 TCAGTTAAAT
Statistics
Matches: 328, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
354 318 0.97
355 10 0.03
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (354 bp):
TTAAATGCAACAATTTACAAGAAATAGAAATAATGCTATGACCCAAACGCACAATATGAACACAA
GTACCATCACCCATAAGTAGAGGAATTTTACCTAAATATTGACTCGAATTATTCAATATAGAAGC
CTCCTGACATACGTGGTTGGTGGCACCAGAGTCAAAGTACCAAACGAACATCTTAGTAGATGTAG
AAGGCAATGACATAGACAGCTGAGTAGAAACACCACTTGATAAACCAGGCCTAGCAGAATTTATA
GCAACAGGCCCAACAAACTCAAGAGAAAAAAAGCCAAAAGCAAACCCAGCCGAATTAATGTCAAT
AGACCCAAAAACAGGCCCATCTAAATTAG
Found at i:8025305 original size:10 final size:10
Alignment explanation
Indices: 8025281--8025370 Score: 53
Period size: 10 Copynumber: 9.3 Consensus size: 10
8025271 CAGTAACTTC
8025281 TTATTAAAAA
1 TTATTAAAAA
*
8025291 -AATTAAAAA
1 TTATTAAAAA
*
8025300 TTATTAGAAA
1 TTATTAAAAA
8025310 TTA-TAAAAA
1 TTATTAAAAA
** *
8025319 -TATTTTAAT
1 TTATTAAAAA
* *
8025328 TTTTTATACAA
1 TTATTA-AAAA
*
8025339 TTATAAAAAA
1 TTATTAAAAA
*
8025349 TTA-TATAAA
1 TTATTAAAAA
*
8025358 TTATTAATAA
1 TTATTAAAAA
8025368 TTA
1 TTA
8025371 ATAATTAATA
Statistics
Matches: 56, Mismatches: 19, Indels: 10
0.66 0.22 0.12
Matches are distributed among these distances:
8 2 0.04
9 23 0.41
10 26 0.46
11 5 0.09
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (10 bp):
TTATTAAAAA
Found at i:8025361 original size:19 final size:19
Alignment explanation
Indices: 8025332--8025374 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8025322 TTTAATTTTT
8025332 TATACAATTATAAAAAATTA
1 TATA-AATTATAAAAAATTA
* *
8025352 TATAAATTATTAATAATTA
1 TATAAATTATAAAAAATTA
8025371 -ATAA
1 TATAA
8025375 TTAATAATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 13 0.62
20 4 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
TATAAATTATAAAAAATTA
Found at i:8030934 original size:11 final size:11
Alignment explanation
Indices: 8030902--8030934 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
8030892 ATTGGTGAAA
8030902 TATTTTATTAT
1 TATTTTATTAT
8030913 TATCTTT-TTAT
1 TAT-TTTATTAT
8030924 TATTTTATTAT
1 TATTTTATTAT
8030935 AATATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 3 0.15
11 14 0.70
12 3 0.15
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:8041141 original size:31 final size:32
Alignment explanation
Indices: 8041105--8041256 Score: 157
Period size: 34 Copynumber: 4.7 Consensus size: 32
8041095 TTTCGATCTT
8041105 ATATGACATTCTGATATGATATGTTTCT-GAA
1 ATATGACATTCTGATATGATATGTTTCTGGAA
*
8041136 ATATGACA-TCTTGATATGATATGTTTCTAG-A
1 ATATGACATTC-TGATATGATATGTTTCTGGAA
* **
8041167 ATATGACATTTTGATATGGTATATAATTCTGGAA
1 ATATGACATTCTGATAT-G-ATATGTTTCTGGAA
** * *
8041201 ATACAACATTCTGATTTGATATATGTTTCTGGTA
1 ATATGACATTCTGATATG--ATATGTTTCTGGAA
*
8041235 ATAGGACATTCTGATATGATAT
1 ATATGACATTCTGATATGATAT
8041257 TTGTATATGT
Statistics
Matches: 100, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
30 2 0.02
31 40 0.40
32 7 0.07
33 10 0.10
34 41 0.41
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.41
Consensus pattern (32 bp):
ATATGACATTCTGATATGATATGTTTCTGGAA
Found at i:8041501 original size:19 final size:19
Alignment explanation
Indices: 8041477--8041521 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
8041467 TTAGTAATTT
*
8041477 TTTTGGACTTTTAAGTTTG-
1 TTTTGGAC-TTTAAATTTGA
8041496 TTTTGGGACTTTAAATTTGA
1 TTTT-GGACTTTAAATTTGA
8041516 TTTTGG
1 TTTTGG
8041522 TATTTGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.18, C:0.04, G:0.22, T:0.56
Consensus pattern (19 bp):
TTTTGGACTTTAAATTTGA
Found at i:8041504 original size:20 final size:20
Alignment explanation
Indices: 8041476--8041521 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
8041466 GTTAGTAATT
* *
8041476 TTTTTGGACTTTTAAGTTTG-
1 TTTTGGGAC-TTTAAATTTGA
8041496 TTTTGGGACTTTAAATTTGA
1 TTTTGGGACTTTAAATTTGA
8041516 TTTTGG
1 TTTTGG
8041522 TATTTGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.17, C:0.04, G:0.22, T:0.57
Consensus pattern (20 bp):
TTTTGGGACTTTAAATTTGA
Found at i:8045952 original size:25 final size:25
Alignment explanation
Indices: 8045918--8045970 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
8045908 TTCAAAATTA
8045918 AGATCCACTTGTTGTTTTTGAAACT
1 AGATCCACTTGTTGTTTTTGAAACT
8045943 AGATCCACTTGTTGTTTTTGAAACT
1 AGATCCACTTGTTGTTTTTGAAACT
8045968 AGA
1 AGA
8045971 CTCAATTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (25 bp):
AGATCCACTTGTTGTTTTTGAAACT
Found at i:8045986 original size:26 final size:25
Alignment explanation
Indices: 8045931--8045986 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
8045921 TCCACTTGTT
* **
8045931 GTTTTTGAAACTAGATCCACTTGTT
1 GTTTTTGAAACTAGATCCAATTGAA
8045956 GTTTTTGAAACTAGA-CTCAATTGAA
1 GTTTTTGAAACTAGATC-CAATTGAA
*
8045981 GATTTT
1 GTTTTT
8045987 AACATAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (25 bp):
GTTTTTGAAACTAGATCCAATTGAA
Found at i:8051323 original size:16 final size:17
Alignment explanation
Indices: 8051295--8051326 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8051285 TTGGTTAGAA
8051295 TATTTTGATTATTATTT
1 TATTTTGATTATTATTT
8051312 TATTTT-ATTATTATT
1 TATTTTGATTATTATT
8051327 GAGATATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (17 bp):
TATTTTGATTATTATTT
Done.