Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 27 of 185
Found at i:8053452 original size:18 final size:18
Alignment explanation
Indices: 8053401--8053454 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
8053391 AGGATTTTGG
* *
8053401 AATTTTTTTTTTAAATTA
1 AATTTTTTTTTGAATTTA
* **
8053419 TATATTTTTTAAGAATTTA
1 AAT-TTTTTTTTGAATTTA
8053438 AATTTTTTTTTGAATTT
1 AATTTTTTTTTGAATTT
8053455 TTATAATGTT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
18 14 0.52
19 13 0.48
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (18 bp):
AATTTTTTTTTGAATTTA
Found at i:8053997 original size:7 final size:7
Alignment explanation
Indices: 8053985--8054010 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8053975 CAAAATTTGA
8053985 TTCGATT
1 TTCGATT
8053992 TTCGATT
1 TTCGATT
8053999 TTCGATT
1 TTCGATT
8054006 TTCGA
1 TTCGA
8054011 ATTATTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (7 bp):
TTCGATT
Found at i:8054576 original size:19 final size:19
Alignment explanation
Indices: 8054523--8054582 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
8054513 TTTTAAATTC
*
8054523 TTGAATGATTTTAGCTCTA
1 TTGAATGATTTTCGCTCTA
* *
8054542 TTTGCAT-CTGTTTCGCTCTA
1 -TTGAATGAT-TTTCGCTCTA
8054562 TTGAATGATTTTCGCTCTA
1 TTGAATGATTTTCGCTCTA
8054581 TT
1 TT
8054583 TTCCTTCTCC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (19 bp):
TTGAATGATTTTCGCTCTA
Found at i:8054934 original size:17 final size:17
Alignment explanation
Indices: 8054912--8054953 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
8054902 TATAAATATA
*
8054912 TAATATTAGTAATAATG
1 TAATATTAGTAATAACG
8054929 TAATATTAGTAATAACG
1 TAATATTAGTAATAACG
*
8054946 TAGTATTA
1 TAATATTA
8054954 ATAGAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.40
Consensus pattern (17 bp):
TAATATTAGTAATAACG
Found at i:8055102 original size:14 final size:14
Alignment explanation
Indices: 8055042--8055100 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
8055032 AAATGATGAA
*
8055042 TAAAATATT-AGAT
1 TAAAATATTAAAAT
*
8055055 TATAATAATT-AAAT
1 TAAAAT-ATTAAAAT
*
8055069 TATAA-ATTAAAAT
1 TAAAATATTAAAAT
8055082 TAAAATATTAAATAT
1 TAAAATATTAAA-AT
8055097 TAAA
1 TAAA
8055101 TACCAGACCT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
12 3 0.08
13 13 0.33
14 17 0.44
15 6 0.15
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
TAAAATATTAAAAT
Found at i:8055518 original size:95 final size:90
Alignment explanation
Indices: 8055258--8055655 Score: 602
Period size: 90 Copynumber: 4.4 Consensus size: 90
8055248 CTTCAATTAA
* *
8055258 TTAATTTATGCTATTGTACTATTATATTAATTTAGGATTCAATTAACTAACTTTAATGTTTAAAC
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
*
8055323 TGTGGTTTAACAGACTTTTTTTTGT
66 TGTAGTTTAACAGACTTTTTTTTGT
* *
8055348 TTAATTTATGCTATTGTACTATTATATTAATTTACGCTTCAATTAACTAACTTTAATGTTTAAAC
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
*
8055413 TGTGGTTTAACAGAC-TTTTTTTGT
66 TGTAGTTTAACAGACTTTTTTTTGT
8055437 TTAATTTATGCTGTTGTACTTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGT
1 TTAATTTATGC-----TA-TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGT
* *
8055502 TTAAAC-GATAGCTTAACAAACTTTTTTTTGT
60 TTAAACTG-TAGTTTAACAGACTTTTTTTTGT
*
8055533 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAA
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
*
8055598 TGTAGTTTAACATACTTTTTTTTTGT
66 TGTAGTTTAACAGAC-TTTTTTTTGT
* *
8055624 TTAATTTATGTTGTTGTACTATTATATTAATT
1 TTAATTTATGCTATTGTACTATTATATTAATT
8055656 AATTTTTAAT
Statistics
Matches: 286, Mismatches: 12, Indels: 19
0.90 0.04 0.06
Matches are distributed among these distances:
89 20 0.07
90 140 0.49
91 43 0.15
94 3 0.01
95 60 0.21
96 20 0.07
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (90 bp):
TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
TGTAGTTTAACAGACTTTTTTTTGT
Found at i:8055564 original size:185 final size:186
Alignment explanation
Indices: 8055271--8055660 Score: 619
Period size: 185 Copynumber: 2.1 Consensus size: 186
8055261 ATTTATGCTA
* * * *
8055271 TTGTACTATTATATTAATTTAGGATTCAATTAACTAACTTTAATGTTTAAACTGTGGTTTAACAG
1 TTGTACTATTATATTAATTTAGGATTCAATTAACTAACTTTAAAGTTTAAACTGTAGCTTAACAA
8055336 ACTTTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTACGCTTCAATTAACTAACTT
66 ACTTTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTACGCTTCAATTAACTAACTT
* * *
8055401 TAATGTTTAAACTGTGGTTTAACAGAC-TTTTTTTGTTTAATTTATGCTGTTGTAC
131 TAAAGTTTAAAATGTAGTTTAACAGACTTTTTTTTGTTTAATTTATGCTGTTGTAC
*
8055456 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC-GATAGCTTAACA
1 TTGTACTATTATATTAATTTAGGATTCAATTAACTAACTTTAAAGTTTAAACTG-TAGCTTAACA
*
8055520 AACTTTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACT
65 AACTTTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTACGCTTCAATTAACTAACT
* *
8055585 TTAAAGTTTAAAATGTAGTTTAACATACTTTTTTTTTGTTTAATTTATGTTGTTGTAC
130 TTAAAGTTTAAAATGTAGTTTAACAGAC-TTTTTTTTGTTTAATTTATGCTGTTGTAC
8055643 TAT-TA-TATTA-ATTAATTT
1 T-TGTACTATTATATTAATTT
8055661 TTAATTTAAT
Statistics
Matches: 190, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
184 1 0.01
185 153 0.81
186 5 0.03
187 30 0.16
188 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (186 bp):
TTGTACTATTATATTAATTTAGGATTCAATTAACTAACTTTAAAGTTTAAACTGTAGCTTAACAA
ACTTTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTACGCTTCAATTAACTAACTT
TAAAGTTTAAAATGTAGTTTAACAGACTTTTTTTTGTTTAATTTATGCTGTTGTAC
Found at i:8063411 original size:39 final size:39
Alignment explanation
Indices: 8063340--8063422 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 39
8063330 AATTATGGAA
* **
8063340 ATATGAAAAATATATGTAAGTATATACTTTAAAATTAT-T
1 ATATGAAAAATATATATAAGTATATAAATTAAAA-TATGT
*
8063379 ATAT-AAAATATATATATAAGTATGTAAATTAAAATATGT
1 ATATGAAAA-ATATATATAAGTATATAAATTAAAATATGT
8063418 ATATG
1 ATATG
8063423 TACATGCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
38 7 0.19
39 30 0.81
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.40
Consensus pattern (39 bp):
ATATGAAAAATATATATAAGTATATAAATTAAAATATGT
Found at i:8066990 original size:16 final size:16
Alignment explanation
Indices: 8066965--8066998 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8066955 TGTGTTTTGC
* *
8066965 TTTGATTGCATGGCAT
1 TTTGACTGCATAGCAT
8066981 TTTGACTGCATAGCAT
1 TTTGACTGCATAGCAT
8066997 TT
1 TT
8066999 CATCATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (16 bp):
TTTGACTGCATAGCAT
Found at i:8078051 original size:51 final size:50
Alignment explanation
Indices: 8077812--8078271 Score: 425
Period size: 51 Copynumber: 9.4 Consensus size: 50
8077802 ATGGCAAATT
* * * *
8077812 TTTTTTCCTTGGCGTTGCAATGGAATAGATTAAAGCTAAAGGCAGCGGATC
1 TTTTTTCCTTGGCGTTGCAGTGG-ACAGATTAAAGCTGAAGGCAGCGAATC
* * *
8077863 -TTTTTCCTTGGCATTGCAGT----AGATTAAAGTTGAAGGCAACGAATC
1 TTTTTTCCTTGGCGTTGCAGTGGACAGATTAAAGCTGAAGGCAGCGAATC
* * * * *
8077908 TTATTT-CATGGCGTTGCAATTGAACAGATTAAAGCTGAAGGCAGTGAATC
1 TTTTTTCCTTGGCGTTGC-AGTGGACAGATTAAAGCTGAAGGCAGCGAATC
* * *
8077958 TTATTTCCCTGGCGTTACAGT----AGATTAAAGCTGAAGGCAGCGAATC
1 TTTTTTCCTTGGCGTTGCAGTGGACAGATTAAAGCTGAAGGCAGCGAATC
* *
8078004 TTTTTTCCTTGGCGTTGCAGTAGGACAGATTAAATCTGAAGGTAGCGAATC
1 TTTTTTCCTTGGCGTTGCAGT-GGACAGATTAAAGCTGAAGGCAGCGAATC
*
8078055 TTTTTTCCTTGGCGTTGCAGTAGGACAGATTAAAGCTGAAGGTAGCGAATC
1 TTTTTTCCTTGGCGTTGCAGT-GGACAGATTAAAGCTGAAGGCAGCGAATC
* * *
8078106 -TTTTTCCTTAGCGTTGCAGTGGAACA-AGTTAAAGCTAAAGGCAGTGAATC
1 TTTTTTCCTTGGCGTTGCAGTGG-ACAGA-TTAAAGCTGAAGGCAGCGAATC
* * * * * *
8078156 TTATTTCCCTGGCGTTGCA----ATAGATTAAAACTGAAGGCAACAAATC
1 TTTTTTCCTTGGCGTTGCAGTGGACAGATTAAAGCTGAAGGCAGCGAATC
* * * * * *
8078202 TTATTTCCTTGGCATTGTAGTAGAACATATTAAAGCTGAAGGAAGCGAAT-
1 TTTTTTCCTTGGCGTTGCAGT-GGACAGATTAAAGCTGAAGGCAGCGAATC
8078252 TTTTTT-CTCTGGCGTTGCAG
1 TTTTTTCCT-TGGCGTTGCAG
8078272 CAGATTAAAG
Statistics
Matches: 339, Mismatches: 48, Indels: 45
0.78 0.11 0.10
Matches are distributed among these distances:
45 30 0.09
46 83 0.24
47 1 0.00
49 5 0.01
50 103 0.30
51 117 0.35
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (50 bp):
TTTTTTCCTTGGCGTTGCAGTGGACAGATTAAAGCTGAAGGCAGCGAATC
Found at i:8078149 original size:198 final size:193
Alignment explanation
Indices: 8077806--8078283 Score: 581
Period size: 198 Copynumber: 2.5 Consensus size: 193
8077796 GTAATCATGG
* * * * * *
8077806 CAAATTTTTTTTCCTTGGCGTTGCAAT-GGAATAGATTAAAGCTAAAGGCAGCGGATC-TTTTTC
1 CAAATCTTTTTTCCTTGGCGTTGCAGTAGG-ACAGATTAAAGCTGAAGGAAGCGAATCTTTTTTC
* * * *
8077869 CTTGGCATTGCAGTAGATTAAAGTTGAAGGCAACGAATCTTATTTCATGGCGTTGCAATTGAACA
65 CTTGGCGTTGCAGTAGATTAAAGCTGAAGGCAACGAATCTTATTTCATAGCGTTGCAATGGAACA
* * * *
8077934 GATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTGGCGTTACAGTAGATTAAAGCTGAAGGCAG
130 GATTAAAGCTAAAGGCAGTGAATCTTATTTCCCTGGCGTTACAATAGATTAAAACTGAAGGCAA
* * *
8077998 CGAATCTTTTTTCCTTGGCGTTGCAGTAGGACAGATTAAATCTGAAGGTAGCGAATCTTTTTTCC
1 CAAATCTTTTTTCCTTGGCGTTGCAGTAGGACAGATTAAAGCTGAAGGAAGCGAATCTTTTTTCC
* * * *
8078063 TTGGCGTTGCAGTAGGACAGATTAAAGCTGAAGGTAGCGAATCTT-TTTCCTTAGCGTTGCAGTG
66 TTGGCGTTGCAGT-----AGATTAAAGCTGAAGGCAACGAATCTTATTT-CATAGCGTTGCAATG
*
8078127 GAACA-AGTTAAAGCTAAAGGCAGTGAATCTTATTTCCCTGGCGTTGCAATAGATTAAAACTGAA
125 GAACAGA-TTAAAGCTAAAGGCAGTGAATCTTATTTCCCTGGCGTTACAATAGATTAAAACTGAA
8078191 GGCAA
189 GGCAA
* * * * *
8078196 CAAATCTTATTTCCTTGGCATTGTAGTAGAACATATTAAAGCTGAAGGAAGCGAAT-TTTTTT-C
1 CAAATCTTTTTTCCTTGGCGTTGCAGTAGGACAGATTAAAGCTGAAGGAAGCGAATCTTTTTTCC
*
8078259 TCTGGCGTTGCAGCAGATTAAAGCT
66 T-TGGCGTTGCAGTAGATTAAAGCT
8078284 ACAAGTTACG
Statistics
Matches: 246, Mismatches: 30, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
192 57 0.23
193 21 0.09
196 2 0.01
197 21 0.09
198 145 0.59
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (193 bp):
CAAATCTTTTTTCCTTGGCGTTGCAGTAGGACAGATTAAAGCTGAAGGAAGCGAATCTTTTTTCC
TTGGCGTTGCAGTAGATTAAAGCTGAAGGCAACGAATCTTATTTCATAGCGTTGCAATGGAACAG
ATTAAAGCTAAAGGCAGTGAATCTTATTTCCCTGGCGTTACAATAGATTAAAACTGAAGGCAA
Found at i:8078181 original size:147 final size:145
Alignment explanation
Indices: 8077813--8078271 Score: 500
Period size: 147 Copynumber: 3.1 Consensus size: 145
8077803 TGGCAAATTT
* * * *
8077813 TTTTTCCTTGGCGTTGCAATGGAATAGATTAAAGCTAAAGGCAGCGGATCTTTTTCCTTGGCATT
1 TTTTTCCTTGGCGTTGCAGTGGAAAAG-TTAAAGCTAAAGGCAGCGAATCTTTTTCCTTGGCGTT
* * * *
8077878 GCAGTAGATTAAAGT-TGAAGGCAACGAATCTTATTT-CATGGCGTTGCAATTGAACAGATTAAA
65 GCAATAGATTAAA-TCTGAAGGCAACGAATCTTATTTCCTTGGCGTTGCAGTAGAACAGATTAAA
* *
8077941 GCTGAAGGCAGTGAATC
129 GCTGAAGGAAGCGAATC
* * * *
8077958 TTATTTCCCTGGCGTTACAGT---AGA-TTAAAGCTGAAGGCAGCGAATCTTTTTTCCTTGGCGT
1 TT-TTTCCTTGGCGTTGCAGTGGAAAAGTTAAAGCTAAAGGCAGCGAATC-TTTTTCCTTGGCGT
* * * * *
8078019 TGCAGTAGGACAGATTAAATCTGAAGGTAGCGAATCTTTTTTCCTTGGCGTTGCAGTAGGACAGA
64 TGC---A--ATAGATTAAATCTGAAGGCAACGAATCTTATTTCCTTGGCGTTGCAGTAGAACAGA
*
8078084 TTAAAGCTGAAGGTAGCGAATC
124 TTAAAGCTGAAGGAAGCGAATC
* * *
8078106 TTTTTCCTTAGCGTTGCAGTGGAACAAGTTAAAGCTAAAGGCAGTGAATCTTATTTCCCTGGCGT
1 TTTTTCCTTGGCGTTGCAGTGGAA-AAGTTAAAGCTAAAGGCAGCGAATCTT-TTTCCTTGGCGT
* * * * *
8078171 TGCAATAGATTAAAACTGAAGGCAACAAATCTTATTTCCTTGGCATTGTAGTAGAACATATTAAA
64 TGCAATAGATTAAATCTGAAGGCAACGAATCTTATTTCCTTGGCGTTGCAGTAGAACAGATTAAA
8078236 GCTGAAGGAAGCGAAT-
129 GCTGAAGGAAGCGAATC
*
8078252 TTTTTTCTCTGGCGTTGCAG
1 TTTTTCCT-TGGCGTTGCAG
8078272 CAGATTAAAG
Statistics
Matches: 260, Mismatches: 38, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
141 20 0.08
142 16 0.06
143 2 0.01
145 3 0.01
146 23 0.09
147 117 0.45
148 40 0.15
149 1 0.00
150 1 0.00
151 3 0.01
152 34 0.13
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (145 bp):
TTTTTCCTTGGCGTTGCAGTGGAAAAGTTAAAGCTAAAGGCAGCGAATCTTTTTCCTTGGCGTTG
CAATAGATTAAATCTGAAGGCAACGAATCTTATTTCCTTGGCGTTGCAGTAGAACAGATTAAAGC
TGAAGGAAGCGAATC
Found at i:8091819 original size:14 final size:15
Alignment explanation
Indices: 8091784--8091812 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8091774 AAAATTAAGC
8091784 AAGAAAAGAGAAAGA
1 AAGAAAAGAGAAAGA
8091799 AAGAAAAGA-AAAGA
1 AAGAAAAGAGAAAGA
8091813 CATAAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AAGAAAAGAGAAAGA
Found at i:8096710 original size:15 final size:15
Alignment explanation
Indices: 8096686--8096715 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8096676 CTCTTAGTTC
*
8096686 ACTAATCCAATTTTT
1 ACTAACCCAATTTTT
8096701 ACTAACCCAATTTTT
1 ACTAACCCAATTTTT
8096716 GGGATGTGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
ACTAACCCAATTTTT
Found at i:8108229 original size:16 final size:16
Alignment explanation
Indices: 8108193--8108226 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
8108183 CAGTTTTACT
8108193 AAAGTAACTAAAAGTA
1 AAAGTAACTAAAAGTA
8108209 AAAGTAACT-AAAGTA
1 AAAGTAACTAAAAGTA
8108224 AAA
1 AAA
8108227 AGTTTCGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAGTAACTAAAAGTA
Found at i:8114967 original size:27 final size:27
Alignment explanation
Indices: 8114890--8114955 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
8114880 GTCCTCCATG
* * * *
8114890 GATCACCATAAAGGTTTCCTTTTCATA
1 GATCACCACAAAAGCTTCCTTTTTATA
8114917 GATCACCACAAAAGCTTCCTTTTTATA
1 GATCACCACAAAAGCTTCCTTTTTATA
8114944 GATCACCACAAA
1 GATCACCACAAA
8114956 TACTTTCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (27 bp):
GATCACCACAAAAGCTTCCTTTTTATA
Found at i:8123858 original size:385 final size:385
Alignment explanation
Indices: 8123148--8123921 Score: 1424
Period size: 385 Copynumber: 2.0 Consensus size: 385
8123138 ACGGATTACC
*
8123148 CAATTTCACCAAAGGTCTTTGCTTGTGTTTGCTTCGTTCATCTTCGACATGAGAGCAAACTGGAT
1 CAATTTCACCAAAGGTCTTTGCTTGTGTTTGCTTCGTTCATCTTCGACAAGAGAGCAAACTGGAT
*
8123213 CTTCATGCAGTCAAATGTGTTTTCATTAGATACTCTCCCACACAGAACGGTTACAAATGTTACCA
66 CCTCATGCAGTCAAATGTGTTTTCATTAGATACTCTCCCACACAGAACGGTTACAAATGTTACCA
8123278 CCCACCATCTAGAAAGTATTATGTATGTATGGATGTAACATTTCGTGAGGATGAACCCTACCTTT
131 CCCACCATCTAGAAAGTATTATGTATGTATGGATGTAACATTTCGTGAGGATGAACCCTACCTTT
8123343 CTTCATCACAACCATCTCTTCAGTGGGAGGTTGTTGAAAATAAAGAGATGACACCTTTTTCTGTT
196 CTTCATCACAACCATCTCTTCAGTGGGAGGTTGTTGAAAATAAAGAGATGACACCTTTTTCTGTT
*
8123408 ACTCTTTCGAGGGAGAATTTAGTTCCAGTAGAGACTTTGGTTCAAGAAAGACTAGTGAACGATTG
261 ACTCTTTCGAGGGAGAATTTAGTTCCAGCAGAGACTTTGGTTCAAGAAAGACTAGTGAACGATTG
*
8123473 TTGGATAGACATGATTTACGGACATACACTAGAAAAGGCAAGAAAGAAAATGCCATTATA
326 TTGGATAGACATGATTTACGGACATACACTAGAAAAGGCAAGAAAGAAAATGCCATCATA
8123533 CAATTTCACCAAAGGTCTTTGCTTGTGTTTGCTTCGTTCATCTTCGACAAGAGAGCAAACTGGAT
1 CAATTTCACCAAAGGTCTTTGCTTGTGTTTGCTTCGTTCATCTTCGACAAGAGAGCAAACTGGAT
* * * *
8123598 CCTCGTGTAGTCAAATGTGTTTTCATTGGATACTCTTCCACACAGAACGGTTACAAATGTTACCA
66 CCTCATGCAGTCAAATGTGTTTTCATTAGATACTCTCCCACACAGAACGGTTACAAATGTTACCA
*
8123663 CCCACCATCTAGACAA-TATTATGTATGTATGGATGTAACATTTCGTGAGGATGGACCCTACCTT
131 CCCACCATCTAGA-AAGTATTATGTATGTATGGATGTAACATTTCGTGAGGATGAACCCTACCTT
*
8123727 TCTTCATCACAACTATCTCTTCAGTGGGAGGTTGTTGAAAATAAAGAGATGACACCTTTTTCTGT
195 TCTTCATCACAACCATCTCTTCAGTGGGAGGTTGTTGAAAATAAAGAGATGACACCTTTTTCTGT
*
8123792 TACTCTTTTGAGGGAGAATTTAGTTCCAGCAGAGACTTTGGTTCAAGAAAGACTAGTGAACGATT
260 TACTCTTTCGAGGGAGAATTTAGTTCCAGCAGAGACTTTGGTTCAAGAAAGACTAGTGAACGATT
*
8123857 GTTGGATAGACATGATTTACGGACATACACTAGAAAAGGCAAGAAAGAAACTGCCATCATA
325 GTTGGATAGACATGATTTACGGACATACACTAGAAAAGGCAAGAAAGAAAATGCCATCATA
8123918 CAAT
1 CAAT
8123922 CTACTTTATG
Statistics
Matches: 376, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
385 374 0.99
386 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (385 bp):
CAATTTCACCAAAGGTCTTTGCTTGTGTTTGCTTCGTTCATCTTCGACAAGAGAGCAAACTGGAT
CCTCATGCAGTCAAATGTGTTTTCATTAGATACTCTCCCACACAGAACGGTTACAAATGTTACCA
CCCACCATCTAGAAAGTATTATGTATGTATGGATGTAACATTTCGTGAGGATGAACCCTACCTTT
CTTCATCACAACCATCTCTTCAGTGGGAGGTTGTTGAAAATAAAGAGATGACACCTTTTTCTGTT
ACTCTTTCGAGGGAGAATTTAGTTCCAGCAGAGACTTTGGTTCAAGAAAGACTAGTGAACGATTG
TTGGATAGACATGATTTACGGACATACACTAGAAAAGGCAAGAAAGAAAATGCCATCATA
Found at i:8128847 original size:104 final size:103
Alignment explanation
Indices: 8128667--8128873 Score: 378
Period size: 104 Copynumber: 2.0 Consensus size: 103
8128657 AGTGAACTTC
*
8128667 AAAATCACAGTACTTTTCCCCTTAATCTTAGAAGTTGCAGCGTTGCCCATATAAAGTTTCTCCCA
1 AAAATCACAGTACTTTTCCCCTTAACCTTAGAAGTTGCAGCGTTGCCCATATAAAGTTTCTCCCA
8128732 TTTTTCACAAGGAACCAACTCAACAAAAGGAGTCATTGT
66 TTTTTCACAAGGAACCAACTCAAC-AAAGGAGTCATTGT
* *
8128771 AAAATCACAGTACTTTTCCCCTTAACCTTGGAAGTTGCAGCGTTGCCCATATAAAGTTTCTCCCC
1 AAAATCACAGTACTTTTCCCCTTAACCTTAGAAGTTGCAGCGTTGCCCATATAAAGTTTCTCCCA
8128836 TTTTTCACAAGGAACCAACTCAACAAAGGAGTCATTGT
66 TTTTTCACAAGGAACCAACTCAACAAAGGAGTCATTGT
8128874 CGTAGCAAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
103 14 0.14
104 86 0.86
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (103 bp):
AAAATCACAGTACTTTTCCCCTTAACCTTAGAAGTTGCAGCGTTGCCCATATAAAGTTTCTCCCA
TTTTTCACAAGGAACCAACTCAACAAAGGAGTCATTGT
Found at i:8137658 original size:17 final size:17
Alignment explanation
Indices: 8137620--8137663 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
8137610 TTTGATCACA
8137620 TGATAT-TTTAAAAATG
1 TGATATCTTTAAAAATG
**
8137636 AAATATCTTTAAAAATG
1 TGATATCTTTAAAAATG
8137653 TGATATACTTT
1 TGATAT-CTTT
8137664 TATTTGGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 4 0.18
17 14 0.64
18 4 0.18
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (17 bp):
TGATATCTTTAAAAATG
Found at i:8138930 original size:16 final size:15
Alignment explanation
Indices: 8138898--8138947 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
8138888 CTTTTCGGTA
8138898 TATTTATTTTCTTTTTC
1 TATTT-TTTT-TTTTTC
8138915 TATTTTTATTTTTTTC
1 TATTTTT-TTTTTTTC
* *
8138931 TCTTTTTTTTCTTTC
1 TATTTTTTTTTTTTC
8138946 TA
1 TA
8138948 ACTATTTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 8 0.28
16 14 0.48
17 7 0.24
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (15 bp):
TATTTTTTTTTTTTC
Found at i:8139624 original size:3 final size:3
Alignment explanation
Indices: 8139609--8139658 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
8139599 ATAAATTTCA
* * *
8139609 TAT TAT TAC TAT TAT TAT TAC TAT TAT TAT TAGT T-T TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
8139654 T-T TAT
1 TAT TAT
8139659 GTTTTCGTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 4 0.11
3 32 0.84
4 2 0.05
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8139648 original size:12 final size:12
Alignment explanation
Indices: 8139609--8139640 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8139599 ATAAATTTCA
8139609 TATTATTACTAT
1 TATTATTACTAT
8139621 TATTATTACTAT
1 TATTATTACTAT
8139633 TATTATTA
1 TATTATTA
8139641 GTTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTACTAT
Found at i:8141542 original size:13 final size:14
Alignment explanation
Indices: 8141518--8141555 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
8141508 TGTTTTACTG
8141518 AAAATGACTTTC-GA
1 AAAATGA-TTTCTGA
*
8141532 AAAATGATTTCTGG
1 AAAATGATTTCTGA
8141546 AAAATGATTT
1 AAAATGATTT
8141556 ACTCTTCTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (14 bp):
AAAATGATTTCTGA
Found at i:8144991 original size:2 final size:2
Alignment explanation
Indices: 8144984--8145013 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8144974 TTAACACATG
*
8144984 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8145014 GAAACACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:8153466 original size:39 final size:39
Alignment explanation
Indices: 8153410--8153495 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
8153400 TATAACCTAG
*
8153410 TAGCACTTACATGCCCCTGTTGTACTTCGGTACCCTTGA
1 TAGCACTTACATGCCCCTGTTGTACTTCGATACCCTTGA
* *
8153449 TCGCACTTACGTGCCCCTGTTGTACTTCGATACCCTTGA
1 TAGCACTTACATGCCCCTGTTGTACTTCGATACCCTTGA
8153488 TAGCACTT
1 TAGCACTT
8153496 TCGTACCATG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.34
Consensus pattern (39 bp):
TAGCACTTACATGCCCCTGTTGTACTTCGATACCCTTGA
Found at i:8153502 original size:20 final size:20
Alignment explanation
Indices: 8153439--8153502 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
8153429 TTGTACTTCG
* *
8153439 GTACCCTTGATCGCACTTAC
1 GTACCCTTGATAGCACTTTC
* * * *
8153459 GTGCCCCTG-TTGTAC-TTC
1 GTACCCTTGATAGCACTTTC
8153477 GATACCCTTGATAGCACTTTC
1 G-TACCCTTGATAGCACTTTC
8153498 GTACC
1 GTACC
8153503 ATGATTAGTT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
18 3 0.09
19 10 0.31
20 15 0.47
21 4 0.12
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (20 bp):
GTACCCTTGATAGCACTTTC
Found at i:8155330 original size:5 final size:5
Alignment explanation
Indices: 8155320--8155353 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
8155310 TTGCAAGCTA
8155320 GGTTT GGTTT GGTTT GGTTT GGTTT GGTTT GGTT
1 GGTTT GGTTT GGTTT GGTTT GGTTT GGTTT GGTT
8155354 CTGTTGGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.41, T:0.59
Consensus pattern (5 bp):
GGTTT
Found at i:8155363 original size:15 final size:15
Alignment explanation
Indices: 8155320--8155364 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
8155310 TTGCAAGCTA
*
8155320 GGTTTGGTTTGGTTT
1 GGTTTGGTTGGGTTT
*
8155335 GGTTTGGTTTGGTTT
1 GGTTTGGTTGGGTTT
8155350 GGTTCT-GTTGGGTTT
1 GGTT-TGGTTGGGTTT
8155365 TTCCATTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 27 0.96
16 1 0.04
ACGTcount: A:0.00, C:0.02, G:0.40, T:0.58
Consensus pattern (15 bp):
GGTTTGGTTGGGTTT
Found at i:8156528 original size:13 final size:13
Alignment explanation
Indices: 8156510--8156534 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8156500 TTTATTAGTG
8156510 AAAGAGTACATAT
1 AAAGAGTACATAT
8156523 AAAGAGTACATA
1 AAAGAGTACATA
8156535 CAAATTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (13 bp):
AAAGAGTACATAT
Found at i:8156582 original size:23 final size:23
Alignment explanation
Indices: 8156556--8156624 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
8156546 CTAATATATA
8156556 ATTATGTTCAACCTTTAATTGAT
1 ATTATGTTCAACCTTTAATTGAT
* *
8156579 ATTA--TTCAA---ATAA-TAAT
1 ATTATGTTCAACCTTTAATTGAT
8156596 AATTATGTTCAACCTTTAATTGAT
1 -ATTATGTTCAACCTTTAATTGAT
8156620 ATTAT
1 ATTAT
8156625 TCAAATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
17 3 0.09
18 7 0.20
20 5 0.14
21 5 0.14
23 12 0.34
24 3 0.09
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (23 bp):
ATTATGTTCAACCTTTAATTGAT
Found at i:8156587 original size:21 final size:21
Alignment explanation
Indices: 8156562--8156628 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
8156552 TATAATTATG
8156562 TTCAACCTTTAATTGATATTA
1 TTCAACCTTTAATTGATATTA
* *
8156583 TTCAA---ATAA-TAATAATTA
1 TTCAACCTTTAATTGAT-ATTA
8156601 TGTTCAACCTTTAATTGATATTA
1 --TTCAACCTTTAATTGATATTA
8156624 TTCAA
1 TTCAA
8156629 ATAATAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
17 3 0.09
18 7 0.20
20 5 0.14
21 10 0.29
23 7 0.20
24 3 0.09
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (21 bp):
TTCAACCTTTAATTGATATTA
Found at i:8156605 original size:41 final size:41
Alignment explanation
Indices: 8156547--8156657 Score: 213
Period size: 41 Copynumber: 2.7 Consensus size: 41
8156537 AATTTGATAC
8156547 TAATATATAATTATGTTCAACCTTTAATTGATATTATTCAAA
1 TAATA-ATAATTATGTTCAACCTTTAATTGATATTATTCAAA
8156589 TAATAATAATTATGTTCAACCTTTAATTGATATTATTCAAA
1 TAATAATAATTATGTTCAACCTTTAATTGATATTATTCAAA
8156630 TAATAATAATTATGTTCAACCTTTAATT
1 TAATAATAATTATGTTCAACCTTTAATT
8156658 ATGTTCAATC
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
41 64 0.93
42 5 0.07
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.45
Consensus pattern (41 bp):
TAATAATAATTATGTTCAACCTTTAATTGATATTATTCAAA
Found at i:8156636 original size:21 final size:21
Alignment explanation
Indices: 8156571--8156636 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
8156561 GTTCAACCTT
8156571 TAATTGATATTATTCAAATAA
1 TAATTGATATTATTCAAATAA
* *
8156592 TAA-T-A-ATTATGTTCAACCT-T
1 TAATTGATATTA--TTCAA-ATAA
8156612 TAATTGATATTATTCAAATAA
1 TAATTGATATTATTCAAATAA
8156633 TAAT
1 TAAT
8156637 AATTATGTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 10 0.29
21 14 0.41
22 1 0.03
23 4 0.12
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (21 bp):
TAATTGATATTATTCAAATAA
Found at i:8160496 original size:91 final size:91
Alignment explanation
Indices: 8160349--8160556 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
8160339 TTGATTTTAG
* *
8160349 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * **
8160414 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATCATA
*
8160441 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
8160506 TGTAATAATAATTCTTTTAAATCATA
66 TGTAATAATAATTATTTTAAATCATA
* *
8160532 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
8160557 GTTATAATTA
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
91 90 0.85
92 16 0.15
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATCATA
Found at i:8160650 original size:59 final size:57
Alignment explanation
Indices: 8160561--8160771 Score: 150
Period size: 54 Copynumber: 3.6 Consensus size: 57
8160551 TTATTAGTTA
*
8160561 TAATTATTTTAAATT-TTATTA-AG--TCATATATTTTAATTAAAATATATTTAATAT
1 TAATTA-TTTAAATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATAT
* * **
8160615 TAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
1 TAATTATTT-AAATTAT-TTTTATAGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATA
8160680 T
57 T
* * * * *
8160681 TAATTATTAAGAATT-TTATTA-A--ATTATATATTTTAATTATAATATATTTAATAA
1 TAATTATTTA-AATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATAT
*
8160735 TAATTATGTTAATTTATATTTTATAGTATCATATATT
1 TAATTAT-TTAAATTAT-TTTTATAGTATCATATATT
8160772 ATGATTTGAG
Statistics
Matches: 119, Mismatches: 18, Indels: 35
0.69 0.10 0.20
Matches are distributed among these distances:
53 3 0.03
54 25 0.21
55 8 0.07
56 9 0.08
57 5 0.04
59 19 0.16
60 8 0.07
61 10 0.08
63 4 0.03
64 5 0.04
65 6 0.05
66 17 0.14
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (57 bp):
TAATTATTTAAATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATAT
Found at i:8160680 original size:66 final size:64
Alignment explanation
Indices: 8160610--8160808 Score: 195
Period size: 66 Copynumber: 3.2 Consensus size: 64
8160600 AAATATATTT
8160610 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
8160675 G
64 G
* * * * * **
8160676 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
8160730 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
8160795 G
64 G
8160796 AATATTAATTATT
1 AATATTAATTATT
8160809 AAGAATTTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 29
0.69 0.11 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 28 0.27
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:8160696 original size:120 final size:120
Alignment explanation
Indices: 8160572--8160855 Score: 498
Period size: 120 Copynumber: 2.4 Consensus size: 120
8160562 AATTATTTTA
* * * * *
8160572 AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
8160636 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
8160692 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
8160757 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
8160812 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAAT
8160856 TATGTTTAAA
Statistics
Matches: 157, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 155 0.99
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:8160712 original size:61 final size:61
Alignment explanation
Indices: 8160645--8160832 Score: 201
Period size: 61 Copynumber: 3.1 Consensus size: 61
8160635 TTATAGTATC
8160645 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
8160706 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
8160764 C
61 T
8160765 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
8160826 ATATATT
1 ATATATT
8160833 TTAATTATAA
Statistics
Matches: 97, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 18 0.19
60 16 0.16
61 25 0.26
62 8 0.08
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:8160732 original size:15 final size:15
Alignment explanation
Indices: 8160697--8160748 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8160687 TTAAGAATTT
*
8160697 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8160711 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8160725 TATTTAATAATAAT-
1 TATTTAATTATAATA
8160739 TATGTTAATT
1 TAT-TTAATT
8160749 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8161060 original size:44 final size:45
Alignment explanation
Indices: 8160992--8161099 Score: 122
Period size: 45 Copynumber: 2.5 Consensus size: 45
8160982 TTCCATTATG
8160992 CTATTACACCTCTATT-C--T--ATTCAACCAAACACA-AGA-ATA
1 CTATTACACCTCTATTCCATTACATTCAACCAAACA-ATAGATATA
* * * *
8161031 CTATTACGCCTCTATTCCATTACATTCAACCAAACAATTGATTTG
1 CTATTACACCTCTATTCCATTACATTCAACCAAACAATAGATATA
8161076 CTATTACACCTCTATTCCATTACA
1 CTATTACACCTCTATTCCATTACA
8161100 CCTCTATTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
39 15 0.26
40 1 0.02
42 1 0.02
43 1 0.02
44 15 0.26
45 24 0.42
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.33
Consensus pattern (45 bp):
CTATTACACCTCTATTCCATTACATTCAACCAAACAATAGATATA
Found at i:8161099 original size:16 final size:16
Alignment explanation
Indices: 8161078--8161131 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
8161068 TTGATTTGCT
8161078 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
8161094 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
8161110 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
8161126 AATACA
1 ATTACA
8161132 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.28, C:0.35, G:0.02, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:8174508 original size:22 final size:22
Alignment explanation
Indices: 8174483--8174533 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
8174473 AAAATGTTTC
*
8174483 AAAAAAAATAG-AAAAACAAAA
1 AAAAAAAAAAGCAAAAACAAAA
* * *
8174504 AAAAACAAAAGCAACAACAAAT
1 AAAAAAAAAAGCAAAAACAAAA
8174526 AAAAAAAA
1 AAAAAAAA
8174534 GAAAAAAAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.82, C:0.10, G:0.04, T:0.04
Consensus pattern (22 bp):
AAAAAAAAAAGCAAAAACAAAA
Found at i:8174541 original size:12 final size:12
Alignment explanation
Indices: 8174483--8174592 Score: 51
Period size: 12 Copynumber: 8.4 Consensus size: 12
8174473 AAAATGTTTC
*
8174483 AAAAAAAATAGA
1 AAAAAAAAAAGA
8174495 AAAACAAAAAA-A
1 AAAA-AAAAAAGA
*
8174507 AACAAAAGCAACAACA
1 AA-AAAA--AA-AAGA
8174523 AATAAAAAAAAGA
1 AA-AAAAAAAAGA
8174536 AAAAAAGAAAGAGA
1 AAAAAA-AAA-AGA
*
8174550 AGAAGAAGAAAAGA
1 A-AA-AAAAAAAGA
* * *
8174564 AAGAAGAAGAGA
1 AAAAAAAAAAGA
* *
8174576 AAAAGAAAAGGA
1 AAAAAAAAAAGA
8174588 AAAAA
1 AAAAA
8174593 GGAGAGGCCA
Statistics
Matches: 76, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
12 32 0.42
13 16 0.21
14 12 0.16
15 7 0.09
16 9 0.12
ACGTcount: A:0.78, C:0.05, G:0.15, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:8174559 original size:23 final size:26
Alignment explanation
Indices: 8174532--8174582 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
8174522 AAATAAAAAA
*
8174532 AAGAAAA-AAAG-A-AAGAGAAGAAG
1 AAGAAAAGAAAGAAGAAGAGAAAAAG
8174555 AAGAAAAGAAAGAAGAAGAGAAAAAG
1 AAGAAAAGAAAGAAGAAGAGAAAAAG
8174581 AA
1 AA
8174583 AAGGAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 4 0.17
25 1 0.04
26 12 0.50
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (26 bp):
AAGAAAAGAAAGAAGAAGAGAAAAAG
Found at i:8174560 original size:15 final size:15
Alignment explanation
Indices: 8174530--8174582 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
8174520 ACAAATAAAA
8174530 AAAAGAAA-AA-AAG
1 AAAAGAAAGAAGAAG
8174543 -AAAGAGAAGAAGAAG
1 AAAAGA-AAGAAGAAG
8174558 AAAAGAAAGAAGAAG
1 AAAAGAAAGAAGAAG
*
8174573 AGAA-AAAGAA
1 AAAAGAAAGAA
8174583 AAGGAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
12 5 0.14
13 2 0.06
14 8 0.23
15 15 0.43
16 5 0.14
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (15 bp):
AAAAGAAAGAAGAAG
Found at i:8174561 original size:20 final size:21
Alignment explanation
Indices: 8174532--8174579 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
8174522 AAATAAAAAA
8174532 AAGAAAAAAAGAAAG-AGAAG
1 AAGAAAAAAAGAAAGAAGAAG
*
8174552 AAGAAGAAAAGAAAGAAGAAG
1 AAGAAAAAAAGAAAGAAGAAG
8174573 -AGAAAAA
1 AAGAAAAA
8174580 GAAAAGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (21 bp):
AAGAAAAAAAGAAAGAAGAAG
Found at i:8174583 original size:23 final size:24
Alignment explanation
Indices: 8174529--8174593 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 24
8174519 AACAAATAAA
8174529 AAAAAGAAAA-AAAGAAAGAGAAG
1 AAAAAGAAAAGAAAGAAAGAGAAG
*
8174552 AAGAAGAAAAGAAAG-AAGA-AGAG
1 AAAAAGAAAAGAAAGAAAGAGA-AG
8174575 AAAAAGAAAAGGAAA-AAAG
1 AAAAAGAAAA-GAAAGAAAG
8174594 GAGAGGCCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
22 1 0.03
23 24 0.67
24 11 0.31
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (24 bp):
AAAAAGAAAAGAAAGAAAGAGAAG
Found at i:8174762 original size:44 final size:43
Alignment explanation
Indices: 8174698--8174780 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 43
8174688 ATGGGGCGAA
* *
8174698 GTGATCAGAGCGACTTAAATTTTAGATCAAATTGGGGCATGGTG
1 GTGATCAGAGCGACTCAAATTTT-GATCAAATCGGGGCATGGTG
*
8174742 GTGATCAGAGC-AGCTCAAATTTTGATCAGATCGGGGCAT
1 GTGATCAGAGCGA-CTCAAATTTTGATCAAATCGGGGCAT
8174781 ATGATGATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
43 15 0.43
44 20 0.57
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (43 bp):
GTGATCAGAGCGACTCAAATTTTGATCAAATCGGGGCATGGTG
Found at i:8176107 original size:100 final size:100
Alignment explanation
Indices: 8175934--8176868 Score: 1168
Period size: 100 Copynumber: 9.4 Consensus size: 100
8175924 CCATATATTA
* * *
8175934 CAATTCAAAAGATTGAAGCCACAACAGTGAATCTTACTTGCCAGGCAATGCAGTGGAACAGATTG
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
* **
8175999 AAGCTACGACGGTGAATCTCACTTCCCAAACATTG
66 AAGCTACGACGGCGAATCTCACTTCCCCGACATTG
* *
8176034 CAATTCAAAAGATTGAAGCCACAACGGTGAATATTACTTGCCAGGCGATGCAGGGGAACAGATTG
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
*
8176099 AAGCTACGACGGCGAATCTCACTTCCCTGACATTG
66 AAGCTACGACGGCGAATCTCACTTCCCCGACATTG
* *
8176134 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTTCTTGCCAAGCGATGCAGCGGAACAGATTG
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
* * *
8176199 AAGCTACTACGGTGAATCTCACTTCCCCGACATTA
66 AAGCTACGACGGCGAATCTCACTTCCCCGACATTG
* *
8176234 CAATTCAAAAGATTGAAGCCGCAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACATATTG
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
* *
8176299 AAGCTATGACGGTGAATCTCACTTCCCCGACATTG
66 AAGCTACGACGGCGAATCTCACTTCCCCGACATTG
* * *
8176334 CAATTCAAAAGATTAAAGCCACAATGATGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
* * *
8176399 AAGCTACGATGGCAAATCTCACTTCCTCGACATTG
66 AAGCTACGACGGCGAATCTCACTTCCCCGACATTG
*
8176434 CAATTCAAAAGATTGAAGCCACAACAGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
*
8176499 AAGCTACGACAGCGAATCTCACTTCCCCGACATTG
66 AAGCTACGACGGCGAATCTCACTTCCCCGACATTG
* * * *
8176534 CAATTCAAAAGATTGAAACCACAACGGTGAAACTTACTT-CCAAGGCAATGCAGCGGAACAGATG
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCC-AGGCGATGCAGCGGAACAGATT
*
8176598 GAAGCTACGACGGTGAATCTTC-CTTCCCCGACATTG
65 GAAGCTACGACGGCGAATC-TCACTTCCCCGACATTG
* * * * * * * * * *
8176634 -TAGTCAAATAGATTGAAGCTACAACAGCGAATCTCACCTCCCTA-GCGATGCAGTGGAATAGAT
1 CAATTCAAA-AGATTGAAGCCACAACGGTGAATCTTACTTGCC-AGGCGATGCAGCGGAACAGAT
*
8176697 TGAAGCTACAACGGCGAATCTTC-CTTCCCCGACATT-
64 TGAAGCTACGACGGCGAATC-TCACTTCCCCGACATTG
* * * * **** * * *
8176733 AAAGTCAAATAGATTGAAGCTAGAATAACGAATCTTA-TCTCCCTA-GCAATGCAGTGGAACAGA
1 CAATTCAAA-AGATTGAAGCCACAACGGTGAATCTTACT-TGCC-AGGCGATGCAGCGGAACAGA
* ** ** *
8176796 TTGAAGCTACGATGGCGAATCTTGCTTTTCCGACATTA
63 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTG
* * **
8176834 CAACT-AAAAGATTGAAGCCGCAACGGAAAATCTTA
1 CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTA
8176869 TTTCCTCGAC
Statistics
Matches: 741, Mismatches: 86, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
99 28 0.04
100 705 0.95
101 8 0.01
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (100 bp):
CAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTGCCAGGCGATGCAGCGGAACAGATTG
AAGCTACGACGGCGAATCTCACTTCCCCGACATTG
Found at i:8176744 original size:50 final size:50
Alignment explanation
Indices: 8176093--8176754 Score: 209
Period size: 50 Copynumber: 13.2 Consensus size: 50
8176083 GCAGGGGAAC
* * *
8176093 AGATTGAAGCTACGACGGCGAATC-TCACTTCCCTGACATTGCAATTCAAA-
1 AGATTGAAGCTACAACGGCGAATCTTC-CTTCCCCGACATTG-AAGTCAAAT
* * * * * * * *
8176143 AGATTGAAGCCACAACGGTGAATCTTTCTT-GCCAAGCGA-TGCAG-CGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGA-C-ATTGAAGTC-AAAT
* * * *
8176193 AGATTGAAGCTACTACGGTGAATC-TCACTTCCCCGACATTACAATTCAAA-
1 AGATTGAAGCTACAACGGCGAATCTTC-CTTCCCCGACATT-GAAGTCAAAT
** * * * * * * * *
8176243 AGATTGAAGCCGCAACGGTGAATCTTACTTGCCAGGCGA-TGCAG-CGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGAC-ATTGAAGTC-AAAT
* ** * *
8176293 ATATTGAAGCTATGACGGTGAATC-TCACTTCCCCGACATTGCAATTCAAA-
1 AGATTGAAGCTACAACGGCGAATCTTC-CTTCCCCGACATTG-AAGTCAAAT
* * * ** * * * * * * *
8176343 AGATTAAAGCCACAATGATGAATCTTACTTGCCAGGCGA-TGCAG-CGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGAC-ATTGAAGTC-AAAT
* * * * *
8176393 AGATTGAAGCTACGATGGCAAATC-TCACTTCCTCGACATTGCAATTCAAA-
1 AGATTGAAGCTACAACGGCGAATCTTC-CTTCCCCGACATTG-AAGTCAAAT
* * * * * * * * * *
8176443 AGATTGAAGCCACAACAGTGAATCTTACTTGCCAGGCGA-TGCAG-CGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGAC-ATTGAAGTC-AAAT
* * *
8176493 AGATTGAAGCTACGACAGCGAATC-TCACTTCCCCGACATTGCAATTCAAA-
1 AGATTGAAGCTACAACGGCGAATCTTC-CTTCCCCGACATTG-AAGTCAAAT
* * * * * ** * * * * *
8176543 AGATTGAAACCACAACGGTGAAACTTACTTCCAAGGCAATGCAG-CGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGACATTGAAGTC-AAAT
* * * *
8176593 AGATGGAAGCTACGACGGTGAATCTTCCTTCCCCGACATTGTAGTCAAAT
1 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGACATTGAAGTCAAAT
* * * * **
8176643 AGATTGAAGCTACAACAGCGAATC-TCACCT-CCCTAGCGA-TGCAGTGGAAT
1 AGATTGAAGCTACAACGGCGAATCTTC-CTTCCCCGA-C-ATTGAAGTCAAAT
*
8176693 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGACATTAAAGTCAAAT
1 AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGACATTGAAGTCAAAT
8176743 AGATTGAAGCTA
1 AGATTGAAGCTA
8176755 GAATAACGAA
Statistics
Matches: 431, Mismatches: 137, Indels: 88
0.66 0.21 0.13
Matches are distributed among these distances:
48 5 0.01
49 32 0.07
50 358 0.83
51 32 0.07
52 4 0.01
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTCCTTCCCCGACATTGAAGTCAAAT
Found at i:8176818 original size:50 final size:50
Alignment explanation
Indices: 8176443--8176805 Score: 182
Period size: 50 Copynumber: 7.3 Consensus size: 50
8176433 GCAATTCAAA
* * * * * * *
8176443 AGATTGAAGCCACAACAGTGAATCTTACTTGCC-AGGCGATGCAGCGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACCTCCCTA-GCAATGCAGTGGAAT
* * * * * * ** *
8176493 AGATTGAAGCTACGACAGCGAATCTCACTTCCC-CGACATTGCAATTCAAA
1 AGATTGAAGCTACAACAGCGAATCTTACCTCCCTAG-CAATGCAGTGGAAT
* * * * * * * * *
8176543 AGATTGAAACCACAACGGTGAAACTTA-CTTCCAAGGCAATGCAGCGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACCTCCCTA-GCAATGCAGTGGAAT
* * * * * * * **
8176593 AGATGGAAGCTACGACGGTGAATCTT-CCTTCCC-CGACATTGTAGTCAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACC-TCCCTAG-CAATGCAGTGGAAT
* *
8176643 AGATTGAAGCTACAACAGCGAATCTCACCTCCCTAGCGATGCAGTGGAAT
1 AGATTGAAGCTACAACAGCGAATCTTACCTCCCTAGCAATGCAGTGGAAT
* * * ** **
8176693 AGATTGAAGCTACAACGGCGAATCTT-CCTTCCC-CGACATTAAAGTCAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACC-TCCCTAG-CAATGCAGTGGAAT
* * * * *
8176743 AGATTGAAGCTAGAATAACGAATCTTATCTCCCTAGCAATGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACCTCCCTAGCAATGCAGTGGAAT
8176793 AGATTGAAGCTAC
1 AGATTGAAGCTAC
8176806 GATGGCGAAT
Statistics
Matches: 226, Mismatches: 75, Indels: 24
0.70 0.23 0.07
Matches are distributed among these distances:
49 8 0.04
50 209 0.92
51 9 0.04
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (50 bp):
AGATTGAAGCTACAACAGCGAATCTTACCTCCCTAGCAATGCAGTGGAAT
Found at i:8178345 original size:35 final size:35
Alignment explanation
Indices: 8178252--8178345 Score: 80
Period size: 35 Copynumber: 2.6 Consensus size: 35
8178242 ATACATATAT
* * * * *
8178252 TTTTTATATATATTTTTATATACTTATACACATACTTT
1 TTTTTATA-AT-TTATT-TATACATATAAACATACCTA
* * **
8178290 TTTTTGTAATATATACATACATATAAACATACCTA
1 TTTTTATAATTTATTTATACATATAAACATACCTA
8178325 TTTTTATAATTTATTTATACA
1 TTTTTATAATTTATTTATACA
8178346 CGCATATGTA
Statistics
Matches: 43, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
35 32 0.74
36 2 0.05
37 2 0.05
38 7 0.16
ACGTcount: A:0.36, C:0.11, G:0.01, T:0.52
Consensus pattern (35 bp):
TTTTTATAATTTATTTATACATATAAACATACCTA
Found at i:8194263 original size:15 final size:15
Alignment explanation
Indices: 8194243--8194272 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8194233 TTTGATATAC
8194243 ACCCAGAGTAAAAAA
1 ACCCAGAGTAAAAAA
8194258 ACCCAGAGTAAAAAA
1 ACCCAGAGTAAAAAA
8194273 TTTAACCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.13, T:0.07
Consensus pattern (15 bp):
ACCCAGAGTAAAAAA
Found at i:8194827 original size:18 final size:18
Alignment explanation
Indices: 8194801--8194835 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8194791 ATAATGTACC
*
8194801 AAACTATTTTCATGCTTG
1 AAACCATTTTCATGCTTG
*
8194819 AAACCATTTTGATGCTT
1 AAACCATTTTCATGCTT
8194836 ACTATTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACCATTTTCATGCTTG
Found at i:8197108 original size:27 final size:27
Alignment explanation
Indices: 8197078--8197327 Score: 200
Period size: 27 Copynumber: 9.3 Consensus size: 27
8197068 TTTCCTTTAA
*
8197078 AGTTCACTATGAATACCATTCTTTCAG
1 AGTTCACCATGAATACCATTCTTTCAG
** *
8197105 AGTTTGCCATGAGTACCATTCCTTT-AG
1 AGTTCACCATGAATACCATT-CTTTCAG
* *
8197132 AGGTCACCACGAATACCATTCCTTT-AG
1 AGTTCACCATGAATACCATT-CTTTCAG
* * * * *
8197159 AGGTCACCACGAAAACCATTCCTTCAA
1 AGTTCACCATGAATACCATTCTTTCAG
** * * * *
8197186 AGTTTTCAATGAATACCATTCCTTAAC
1 AGTTCACCATGAATACCATTCTTTCAG
* *
8197213 AGTTCGCCATGAATACCATTCCTTT-TG
1 AGTTCACCATGAATACCATT-CTTTCAG
** *
8197240 AGTTTGCCATGAATACCATTCCTTCAG
1 AGTTCACCATGAATACCATTCTTTCAG
* * *
8197267 ATTTCACCATGAGTACCATTCTTTTAG
1 AGTTCACCATGAATACCATTCTTTCAG
* * *
8197294 AGTTCTCCATGAATACCATTCCTTCAA
1 AGTTCACCATGAATACCATTCTTTCAG
8197321 AGTTCAC
1 AGTTCAC
8197328 AACATGGGGT
Statistics
Matches: 177, Mismatches: 42, Indels: 8
0.78 0.19 0.04
Matches are distributed among these distances:
26 6 0.03
27 164 0.93
28 7 0.04
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (27 bp):
AGTTCACCATGAATACCATTCTTTCAG
Found at i:8197151 original size:54 final size:54
Alignment explanation
Indices: 8197042--8197327 Score: 266
Period size: 54 Copynumber: 5.3 Consensus size: 54
8197032 ACAAAGGCAT
* * * ** * * *
8197042 TTCCTTCATAGTTCACCTTGCATGTCTTTCCTTTAAAGTTCACTATGAATACCA
1 TTCCTTCAGAGTTCACCATGAATACCATTCCTTTAGAGTTCACCATGAATACCA
* ** * * *
8197096 TTCTTTCAGAGTTTGCCATGAGTACCATTCCTTTAGAGGTCACCACGAATACCA
1 TTCCTTCAGAGTTCACCATGAATACCATTCCTTTAGAGTTCACCATGAATACCA
* * * * * * ** *
8197150 TTCCTTTAGAGGTCACCACGAAAACCATTCCTTCAAAGTTTTCAATGAATACCA
1 TTCCTTCAGAGTTCACCATGAATACCATTCCTTTAGAGTTCACCATGAATACCA
* * * * **
8197204 TTCCTTAACAGTTCGCCATGAATACCATTCCTTTTGAGTTTGCCATGAATACCA
1 TTCCTTCAGAGTTCACCATGAATACCATTCCTTTAGAGTTCACCATGAATACCA
* * * *
8197258 TTCCTTCAGATTTCACCATGAGTACCATTCTTTTAGAGTTCTCCATGAATACCA
1 TTCCTTCAGAGTTCACCATGAATACCATTCCTTTAGAGTTCACCATGAATACCA
*
8197312 TTCCTTCAAAGTTCAC
1 TTCCTTCAGAGTTCAC
8197328 AACATGGGGT
Statistics
Matches: 181, Mismatches: 51, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 181 1.00
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (54 bp):
TTCCTTCAGAGTTCACCATGAATACCATTCCTTTAGAGTTCACCATGAATACCA
Found at i:8197177 original size:81 final size:81
Alignment explanation
Indices: 8197069--8197327 Score: 295
Period size: 81 Copynumber: 3.2 Consensus size: 81
8197059 TTGCATGTCT
* * * *
8197069 TTCCTTTAAAGTTCACTATGAATACCATTCTTTCAGAGTTTGCCATGAGTACCATTCCTTTAGAG
1 TTCCTTTAGAGTTCACCATGAATACCATTCCTTCAGAGTTTACCATGAGTACCATTCCTTTAGAG
* *
8197134 GTCACCACGAATACCA
66 TTCACCATGAATACCA
* * * * * * * * *
8197150 TTCCTTTAGAGGTCACCACGAAAACCATTCCTTCAAAGTTTTCAATGAATACCATTCCTTAACAG
1 TTCCTTTAGAGTTCACCATGAATACCATTCCTTCAGAGTTTACCATGAGTACCATTCCTTTAGAG
*
8197215 TTCGCCATGAATACCA
66 TTCACCATGAATACCA
* ** *
8197231 TTCCTTTTGAGTTTGCCATGAATACCATTCCTTCAGA-TTTCACCATGAGTACCATTCTTTTAGA
1 TTCCTTTAGAGTTCACCATGAATACCATTCCTTCAGAGTTT-ACCATGAGTACCATTCCTTTAGA
*
8197295 GTTCTCCATGAATACCA
65 GTTCACCATGAATACCA
* *
8197312 TTCCTTCAAAGTTCAC
1 TTCCTTTAGAGTTCAC
8197328 AACATGGGGT
Statistics
Matches: 143, Mismatches: 34, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
80 3 0.02
81 140 0.98
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (81 bp):
TTCCTTTAGAGTTCACCATGAATACCATTCCTTCAGAGTTTACCATGAGTACCATTCCTTTAGAG
TTCACCATGAATACCA
Found at i:8199856 original size:12 final size:12
Alignment explanation
Indices: 8199839--8199872 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
8199829 TATATTTTTT
8199839 TAAAAAATTATA
1 TAAAAAATTATA
*
8199851 TAAAAAATAATA
1 TAAAAAATTATA
8199863 TAAAAAATTA
1 TAAAAAATTA
8199873 ATATGGGCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
TAAAAAATTATA
Found at i:8199868 original size:13 final size:12
Alignment explanation
Indices: 8199839--8199876 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
8199829 TATATTTTTT
*
8199839 TAAAAAATTATA
1 TAAAAAATAATA
8199851 TAAAAAATAATA
1 TAAAAAATAATA
8199863 TAAAAAATTAATA
1 TAAAAAA-TAATA
8199876 T
1 T
8199877 GGGCGGGCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 18 0.75
13 6 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
TAAAAAATAATA
Found at i:8200999 original size:9 final size:10
Alignment explanation
Indices: 8200970--8201006 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
8200960 CGAGACTAAA
8200970 TTGGAAACAT
1 TTGGAAACAT
8200980 TTGGAAACAT
1 TTGGAAACAT
8200990 TTGG-AACAT
1 TTGGAAACAT
8200999 TTAGGAAA
1 TT-GGAAA
8201007 AAGCTGATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 7 0.28
10 16 0.64
11 2 0.08
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (10 bp):
TTGGAAACAT
Found at i:8218419 original size:24 final size:24
Alignment explanation
Indices: 8218390--8218457 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
8218380 AAATCTTAAT
* *
8218390 ACAAAGGCACTTATAGAATATGCC
1 ACAAAGGAACTTACAGAATATGCC
* *
8218414 GCAAAGGTACTTACAGAATATGCC
1 ACAAAGGAACTTACAGAATATGCC
8218438 ACAAAGGAACTTACAGAATA
1 ACAAAGGAACTTACAGAATA
8218458 CCCTGACTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (24 bp):
ACAAAGGAACTTACAGAATATGCC
Found at i:8220908 original size:6 final size:6
Alignment explanation
Indices: 8220897--8220926 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
8220887 CAAAGTGTGC
*
8220897 CTGTAA CTGTAA CTGTAA CTGTAA TTGTAA
1 CTGTAA CTGTAA CTGTAA CTGTAA CTGTAA
8220927 ATGCTCACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (6 bp):
CTGTAA
Found at i:8237527 original size:18 final size:18
Alignment explanation
Indices: 8237501--8237545 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
8237491 CGTTCGTTTC
8237501 CAAAACATTATTC-ATTT
1 CAAAACATTATTCAATTT
*
8237518 ACAAATCATTATTCAATTT
1 -CAAAACATTATTCAATTT
8237537 CAAAACATT
1 CAAAACATT
8237546 TTCTTATTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (18 bp):
CAAAACATTATTCAATTT
Found at i:8241589 original size:20 final size:20
Alignment explanation
Indices: 8241525--8241589 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 20
8241515 CTACAACTAG
8241525 ATAGATACAAGCTTTCATAC
1 ATAGATACAAGCTTTCATAC
* *
8241545 ATAGTATTGC-ATCTTGTAGCATAC
1 ATAG-A-TACAAGCTT-T--CATAC
8241569 ATAGATACAAGCTTTCATAC
1 ATAGATACAAGCTTTCATAC
8241589 A
1 A
8241590 ACCAGAGCGT
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
20 10 0.29
21 5 0.14
22 6 0.17
23 5 0.14
24 9 0.26
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.32
Consensus pattern (20 bp):
ATAGATACAAGCTTTCATAC
Found at i:8250636 original size:15 final size:15
Alignment explanation
Indices: 8250616--8250656 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
8250606 CCCTTCTTCT
8250616 TCATCACATATAACA
1 TCATCACATATAACA
* *
8250631 TCATCATATATCACA
1 TCATCACATATAACA
*
8250646 TCAACACATAT
1 TCATCACATAT
8250657 CATACACTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
TCATCACATATAACA
Found at i:8251542 original size:16 final size:17
Alignment explanation
Indices: 8251516--8251547 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8251506 AAGCGAAGTG
8251516 AAAGTGATGGTTATGAA
1 AAAGTGATGGTTATGAA
8251533 AAAG-GATGGTTATGA
1 AAAGTGATGGTTATGA
8251548 GGTATGAGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.28
Consensus pattern (17 bp):
AAAGTGATGGTTATGAA
Found at i:8252780 original size:26 final size:26
Alignment explanation
Indices: 8252742--8252857 Score: 99
Period size: 26 Copynumber: 4.3 Consensus size: 26
8252732 GTATAAAAGA
* * *
8252742 CCTTTGTGCCTATCTCT-GAATGAACG
1 CCTTTGTGGCTATCTCTAAAAGGAA-G
* *
8252768 TCTTTGTGGCTATTTCTAAAAGGAAG
1 CCTTTGTGGCTATCTCTAAAAGGAAG
**
8252794 CCTTTGTGGCTATCTCTAAAAAAAAG
1 CCTTTGTGGCTATCTCTAAAAGGAAG
* *
8252820 CCTTTGTGGCAATCTTTAGTATAAGGAAG
1 CCTTTGTGGCTATCTCTA--A-AAGGAAG
*
8252849 CATTTGTGG
1 CCTTTGTGG
8252858 TGATCCCTGT
Statistics
Matches: 72, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
26 53 0.74
27 5 0.07
28 1 0.01
29 13 0.18
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (26 bp):
CCTTTGTGGCTATCTCTAAAAGGAAG
Found at i:8252921 original size:29 final size:29
Alignment explanation
Indices: 8252817--8252933 Score: 139
Period size: 29 Copynumber: 4.0 Consensus size: 29
8252807 CTCTAAAAAA
** *
8252817 AAGCCTTTGTGGCAATCTTTAG-TATAAGG
1 AAGCCTTTGTGGTGATCTCT-GTTATAAGG
* *
8252846 AAGCATTTGTGGTGATCCCTGTTATAAGG
1 AAGCCTTTGTGGTGATCTCTGTTATAAGG
8252875 AAGCCATTT-TGGTGATCTCTGTTATAAGG
1 AAGCC-TTTGTGGTGATCTCTGTTATAAGG
* *
8252904 AAGCCTTTGTGGTGATCTTTGTTAAAAGG
1 AAGCCTTTGTGGTGATCTCTGTTATAAGG
8252933 A
1 A
8252934 TGTCTATGTG
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
28 4 0.05
29 69 0.91
30 3 0.04
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (29 bp):
AAGCCTTTGTGGTGATCTCTGTTATAAGG
Found at i:8252943 original size:29 final size:29
Alignment explanation
Indices: 8252842--8252944 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
8252832 TCTTTAGTAT
* * * *
8252842 AAGGAAGCATTTGTGGTGATCCCTGTTAT
1 AAGGAAGCCTATGTGGTGATCTCTGTTAA
* *
8252871 AAGGAAGCC-ATTTTGGTGATCTCTGTTAT
1 AAGGAAGCCTA-TGTGGTGATCTCTGTTAA
* *
8252900 AAGGAAGCCTTTGTGGTGATCTTTGTTAA
1 AAGGAAGCCTATGTGGTGATCTCTGTTAA
* *
8252929 AAGGATGTCTATGTGG
1 AAGGAAGCCTATGTGG
8252945 CTATCTCCGA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36
Consensus pattern (29 bp):
AAGGAAGCCTATGTGGTGATCTCTGTTAA
Found at i:8252951 original size:58 final size:58
Alignment explanation
Indices: 8252839--8252968 Score: 131
Period size: 58 Copynumber: 2.2 Consensus size: 58
8252829 CAATCTTTAG
* * * * *
8252839 TATAAGGAAGCATTTGTGGTGATCCCTGTTATAAGGAAGCCATTTTGGTGATCTCTGT
1 TATAAGGAAGCCTTTGTGGTGATCCCTGTTAAAAGGAAGCCATTGTGGTGATCTCCGA
** * *
8252897 TATAAGGAAGCCTTTGTGGTGATCTTTGTTAAAAGGATGTC-TATGTGGCT-ATCTCCGA
1 TATAAGGAAGCCTTTGTGGTGATCCCTGTTAAAAGGAAGCCAT-TGTGG-TGATCTCCGA
8252955 TA-AAGGAATGCCTT
1 TATAAGGAA-GCCTT
8252969 AGGGCAAACT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
57 7 0.12
58 52 0.87
59 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (58 bp):
TATAAGGAAGCCTTTGTGGTGATCCCTGTTAAAAGGAAGCCATTGTGGTGATCTCCGA
Found at i:8266629 original size:31 final size:31
Alignment explanation
Indices: 8266588--8266832 Score: 181
Period size: 31 Copynumber: 7.7 Consensus size: 31
8266578 ACTTTATTTG
* * *
8266588 TTCTATGTTTATTGTCCCAGCAAACTATCTA
1 TTCTGTGTTTACTGTCCCAGCGAACTATCTA
* * * *
8266619 TTATGTGTTTACTGTAGCCATG-G-GCTATCTC
1 TTCTGTGTTTACTGT-CCCA-GCGAACTATCTA
* *
8266650 TGTATTTTGTTTACTGTCCCAGCGAACTATCTA
1 T-T-CTGTGTTTACTGTCCCAGCGAACTATCTA
* * * * *
8266683 TTCTATGGTTATTGTCCTAGCGAACTTTCTCCA
1 TTCTGTGTTTACTGTCCCAGCGAACTATCT--A
* * ***
8266716 TTCTGTGTTTATTGTCCCAACGGGTTATCTA
1 TTCTGTGTTTACTGTCCCAGCGAACTATCTA
* *
8266747 TTATGTGTTTACTGTCCCAGC-AGACTTTCTTTA
1 TTCTGTGTTTACTGTCCCAGCGA-ACTATC--TA
* *
8266780 TTCTGTGTTTACTATCCCAGCGAATTATCTA
1 TTCTGTGTTTACTGTCCCAGCGAACTATCTA
8266811 TTCTGTGTTTACTGTCCCAGCG
1 TTCTGTGTTTACTGTCCCAGCG
8266833 GAATTTCTCT
Statistics
Matches: 164, Mismatches: 38, Indels: 24
0.73 0.17 0.11
Matches are distributed among these distances:
31 87 0.53
32 9 0.05
33 67 0.41
34 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (31 bp):
TTCTGTGTTTACTGTCCCAGCGAACTATCTA
Found at i:8266725 original size:64 final size:64
Alignment explanation
Indices: 8266657--8266841 Score: 221
Period size: 64 Copynumber: 2.9 Consensus size: 64
8266647 CTCTGTATTT
* * * * *
8266657 TGTTTACTGTCCCAGCGAACTATCTATTCTATGGTTATTGTCCTAGCGAACTTTCTCCATTCTG
1 TGTTTACTGTCCCAGCGAATTATCTATTCTGTGTTTACTGTCCCAGCGAACTTTCTCCATTCTG
* * ** * **
8266721 TGTTTATTGTCCCAACGGGTTATCTATTATGTGTTTACTGTCCCAGC-AGACTTTCTTTATTCTG
1 TGTTTACTGTCCCAGCGAATTATCTATTCTGTGTTTACTGTCCCAGCGA-ACTTTCTCCATTCTG
*
8266785 TGTTTACTATCCCAGCGAATTATCTATTCTGTGTTTACTGTCCCAGCGGAA-TTTCTC
1 TGTTTACTGTCCCAGCGAATTATCTATTCTGTGTTTACTGTCCCAGC-GAACTTTCTC
8266842 TGTAGATGTC
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
63 1 0.01
64 96 0.97
65 1 0.01
66 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.42
Consensus pattern (64 bp):
TGTTTACTGTCCCAGCGAATTATCTATTCTGTGTTTACTGTCCCAGCGAACTTTCTCCATTCTG
Found at i:8282504 original size:71 final size:71
Alignment explanation
Indices: 8282388--8282566 Score: 358
Period size: 71 Copynumber: 2.5 Consensus size: 71
8282378 GTTTGCTTCC
8282388 ATTGAATTTCTATGATGTTGCAGCAAATATAGTTATAGAGTTTAAATAGGAAAATTGGAGTGATT
1 ATTGAATTTCTATGATGTTGCAGCAAATATAGTTATAGAGTTTAAATAGGAAAATTGGAGTGATT
8282453 TACGGT
66 TACGGT
8282459 ATTGAATTTCTATGATGTTGCAGCAAATATAGTTATAGAGTTTAAATAGGAAAATTGGAGTGATT
1 ATTGAATTTCTATGATGTTGCAGCAAATATAGTTATAGAGTTTAAATAGGAAAATTGGAGTGATT
8282524 TACGGT
66 TACGGT
8282530 ATTGAATTTCTATGATGTTGCAGCAAATATAGTTATA
1 ATTGAATTTCTATGATGTTGCAGCAAATATAGTTATA
8282567 ATATATTTAA
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 108 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.37
Consensus pattern (71 bp):
ATTGAATTTCTATGATGTTGCAGCAAATATAGTTATAGAGTTTAAATAGGAAAATTGGAGTGATT
TACGGT
Found at i:8282673 original size:18 final size:17
Alignment explanation
Indices: 8282645--8282679 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8282635 ATTATTAAGA
*
8282645 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8282662 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8282680 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8282797 original size:147 final size:149
Alignment explanation
Indices: 8282633--8282907 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
8282623 ATAAGAATAT
*
8282633 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
8282698 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
8282761 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
8282780 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
8282845 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
8282908 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:8282820 original size:18 final size:17
Alignment explanation
Indices: 8282792--8282826 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8282782 ATTATTAAGA
*
8282792 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8282809 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8282827 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8283037 original size:44 final size:45
Alignment explanation
Indices: 8282988--8283082 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
8282978 TTACACCTCT
* *
8282988 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
8283032 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
8283077 ATTACA
1 ATTACA
8283083 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:8283082 original size:16 final size:16
Alignment explanation
Indices: 8283063--8283114 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
8283053 GATTTGCTAT
* *
8283063 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
8283079 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8283095 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8283111 TACA
1 TACA
8283115 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8285844 original size:18 final size:19
Alignment explanation
Indices: 8285810--8285849 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8285800 ATGCACTGGC
* *
8285810 AATCAAATCTGAAGTCCCT
1 AATCAAATCTCAAGTCCAT
8285829 AATCAAAT-TCAAGTCCAT
1 AATCAAATCTCAAGTCCAT
8285847 AAT
1 AAT
8285850 GCCCTGATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (19 bp):
AATCAAATCTCAAGTCCAT
Found at i:8290455 original size:10 final size:9
Alignment explanation
Indices: 8290412--8290468 Score: 51
Period size: 10 Copynumber: 5.8 Consensus size: 9
8290402 TGATTTACAG
8290412 TTTTTCTTT
1 TTTTTCTTT
8290421 GTTTTTCTTT
1 -TTTTTCTTT
8290431 TTTTCTCCATTT
1 TTTT-T-C-TTT
8290443 TTTTTCATTT
1 TTTTTC-TTT
*
8290453 TTTTCCTTT
1 TTTTTCTTT
*
8290462 TCTTTCT
1 TTTTTCT
8290469 CTGTGCGTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 12 0.29
10 20 0.49
11 2 0.05
12 7 0.17
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:8290929 original size:3 final size:3
Alignment explanation
Indices: 8290918--8290956 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
8290908 TACTACTACC
* * *
8290918 ATT ACT ATT ATT ATT ATT ATT ATT ATT AGT GTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8290957 TATATCAGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:8290933 original size:12 final size:12
Alignment explanation
Indices: 8290903--8290956 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
8290893 TTAATTTATC
*
8290903 ATTATTACTACT
1 ATTATTACTATT
**
8290915 ACCATTACTATT
1 ATTATTACTATT
*
8290927 ATTATTATTATT
1 ATTATTACTATT
* *
8290939 ATTATTAGTGTT
1 ATTATTACTATT
8290951 ATTATT
1 ATTATT
8290957 TATATCAGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.04, T:0.56
Consensus pattern (12 bp):
ATTATTACTATT
Found at i:8290992 original size:16 final size:16
Alignment explanation
Indices: 8290973--8291019 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
8290963 AGTTCATATA
8290973 TTTATCTATATAATT-T
1 TTTAT-TATATAATTAT
*
8290989 TTTATGTATATGCATTAT
1 TTTAT-TATAT-AATTAT
8291007 TTTATTATATAAT
1 TTTATTATATAAT
8291020 ATTATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (16 bp):
TTTATTATATAATTAT
Found at i:8291237 original size:16 final size:16
Alignment explanation
Indices: 8291213--8291254 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
8291203 ATCAACTTTA
8291213 ATATATTATTATGTAT
1 ATATATTATTATGTAT
* *
8291229 ATATGTTATTATTTAT
1 ATATATTATTATGTAT
8291245 AT-TATTATTA
1 ATATATTATTA
8291255 AATCTTTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
ATATATTATTATGTAT
Found at i:8291249 original size:12 final size:13
Alignment explanation
Indices: 8291213--8291254 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
8291203 ATCAACTTTA
8291213 ATATATTATTATGT
1 ATATATTATTAT-T
8291227 ATATATGTTATTATT
1 ATATA--TTATTATT
8291242 -TATATTATTATT
1 ATATATTATTATT
8291254 A
1 A
8291255 AATCTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 8 0.32
14 9 0.36
15 1 0.04
16 7 0.28
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
ATATATTATTATT
Found at i:8295733 original size:21 final size:20
Alignment explanation
Indices: 8295704--8295753 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
8295694 TTTAATCAAA
8295704 AAAAT-AAAAAAT-AAAAAC
1 AAAATAAAAAAATCAAAAAC
*
8295722 AAAATCAAAAAAATCAAAATC
1 AAAAT-AAAAAAATCAAAAAC
8295743 AAAATAAAAAA
1 AAAATAAAAAA
8295754 TGATCAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 5 0.18
20 13 0.46
21 10 0.36
ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12
Consensus pattern (20 bp):
AAAATAAAAAAATCAAAAAC
Found at i:8295734 original size:15 final size:14
Alignment explanation
Indices: 8295697--8295783 Score: 61
Period size: 15 Copynumber: 6.0 Consensus size: 14
8295687 GTTCAGATTT
8295697 AATCAAAAAAATAAA
1 AATCAAAAAAA-AAA
* *
8295712 AA--ATAAAAACAA
1 AATCAAAAAAAAAA
*
8295724 AATCAAAAAAATCAA
1 AATCAAAAAAA-AAA
8295739 AATCAAAATAAAAAA
1 AATCAAAA-AAAAAA
* **
8295754 TGATCAAAGTAAAAA
1 -AATCAAAAAAAAAA
8295769 AATCAAAATAAAAAA
1 AATCAAAA-AAAAAA
8295784 GAGAAAAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
12 4 0.07
13 6 0.11
14 12 0.21
15 25 0.45
16 9 0.16
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (14 bp):
AATCAAAAAAAAAA
Found at i:8295761 original size:16 final size:14
Alignment explanation
Indices: 8295722--8295783 Score: 72
Period size: 14 Copynumber: 4.2 Consensus size: 14
8295712 AAATAAAAAC
8295722 AAAATCAAAA-AAA
1 AAAATCAAAATAAA
8295735 TCAAAATCAAAATAAA
1 --AAAATCAAAATAAA
*
8295751 AAATGATCAAAGTAAA
1 AAA--ATCAAAATAAA
8295767 AAAATCAAAATAAA
1 AAAATCAAAATAAA
8295781 AAA
1 AAA
8295784 GAGAAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
14 16 0.38
15 10 0.24
16 16 0.38
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.15
Consensus pattern (14 bp):
AAAATCAAAATAAA
Found at i:8296701 original size:8 final size:8
Alignment explanation
Indices: 8296682--8296710 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8296672 CTTTGAGTCA
8296682 AAAAAATG
1 AAAAAATG
8296690 -AAAAATG
1 AAAAAATG
8296697 AAAAAATG
1 AAAAAATG
8296705 AAAAAA
1 AAAAAA
8296711 GTAAAAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:8296716 original size:15 final size:15
Alignment explanation
Indices: 8296682--8296718 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
8296672 CTTTGAGTCA
*
8296682 AAAAAATGAAAAATG
1 AAAAAATGAAAAAAG
8296697 AAAAAATGAAAAAAG
1 AAAAAATGAAAAAAG
*
8296712 TAAAAAT
1 AAAAAAT
8296719 AGAGAGGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.14
Consensus pattern (15 bp):
AAAAAATGAAAAAAG
Found at i:8298236 original size:129 final size:129
Alignment explanation
Indices: 8297997--8298946 Score: 1424
Period size: 129 Copynumber: 7.4 Consensus size: 129
8297987 TCGACAGCAA
* * * * *
8297997 AGCAAATCGAAGACAGCGAATCTTATCTTCAAGAGTAAGGAAGCATATTTAAGCCACAAGTCCTA
1 AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* * *
8298062 TATCCCTGGTCAGTAATGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAG
66 TATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
* * *
8298126 AGCAGATAAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAGCCACAAGTTCTA
1 AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* *
8298191 TATCCCTGGTCAGCAATAGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
66 TATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
* *
8298255 AGCAGATCAAAGACGGCGAATCTTATCGTCAAGTGTAAGGAAGGAGATTTAAGCCACAAGTCCTA
1 AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* *
8298320 TATCCCTGGTCAGTAGTGGAATAGGTTGGGAAATTACAGATCATGTCTCCCTAAGCAATAGCGG
66 TATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
* * *
8298384 AGTAGATCGAAGACGGCGAATCTTATCTTCAAGTATAAGGAAGCAGATTTAAGCCACAAGTCCTA
1 AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* * * *
8298449 TATCTCTGGT-ATGCAGTAGAATAGGTTGGGAAATTATAGATCTTGTCTCCCTAAGAAATAGC-G
66 TATCCCTGGTCA-GCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
* *
8298512 ACGCAGATCGAAA-ACGGCGAATCTTATCTTTAAGTGTAAGGAAGCAGATTTAAGCCACAAGTTC
1 A-GCAGATC-AAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCC
* *
8298576 TATATCACTGGTCAGCAGTGGAATAGGTTAGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCG
64 TATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCG
8298641 G
129 G
* * * *
8298642 AGCAGATCGAAGACGGCGAATCTTATATTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCATA
1 AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* * *
8298707 TATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTGCAGATCTTGTCTCCCTAA-AAATAGTGG
66 TATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
* * * * *
8298770 AGCAGATCGAAGACAGTGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGTCACAAGTCCTA
1 AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* * *
8298835 TATCCCTAGTCAGTAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
66 TATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
* * *
8298898 AGCAGATCAAGGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATT
1 AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATT
8298947 GAAGTCGATA
Statistics
Matches: 744, Mismatches: 70, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
127 25 0.03
128 145 0.19
129 569 0.76
130 5 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (129 bp):
AGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
TATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
Found at i:8298989 original size:44 final size:44
Alignment explanation
Indices: 8298939--8299468 Score: 223
Period size: 44 Copynumber: 12.2 Consensus size: 44
8298929 AGAGTAAGGA
* * *
8298939 AGCAGATTGAAGTCGATAATCCTATCTCCCTAAAGTTACAGAGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGAGG
* * * * *
8298983 AGCAGATTAAAGT-AATAGATCTTATCTCTCTAAAGTTGCTGTA-G
1 AGCAGATTGAAGTCGATA-ATCTTATCTCCCTGAAGTTGCAG-AGG
* * * ** * *
8299027 AGTAGATCGCA-TC-A-GGTCTTATCTCCCCGAAGTTGCAGCGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGAGG
* * * *
8299068 AGCAGACTG-AGT-AAGTAGGTCTTATCCCCCTGAAGTTGCAGAGG
1 AGCAGATTGAAGTCGA-TA-ATCTTATCTCCCTGAAGTTGCAGAGG
* * * * *
8299112 GGCAGATCGAAGATGGCA-AATCTTATCTCCCTGAGGTTGCAGTGG
1 AGCAGATTGAAG-TCG-ATAATCTTATCTCCCTGAAGTTGCAGAGG
* * *
8299157 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGAGG
* * * * * * *
8299201 AGCAGATTCAAGCCGATAATCCTAACTCCTTGAAGTTACAAAGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGAGG
* ** * * * * *
8299245 AGCTGATT-AAAACTACAGATCTTATCTCTCTAAAGTTGTAGTA-G
1 AGCAGATTGAAGTCGATA-ATCTTATCTCCCTGAAGTTGCAG-AGG
** * * * *
8299289 AGCAGATTGCAACCCG----TCTTGTCTCTCTGAGGTTGCAGTGG
1 AGCAGATTG-AAGTCGATAATCTTATCTCCCTGAAGTTGCAGAGG
* *** ** * * *
8299330 AGTAGACACAAG-AAACCAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTGAAGTCGA-TAATCTTATCTCCCTGAAGTTGCAGAGG
* * * *
8299374 AGCGGATTAGAA-CCGCA-AATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATT-GAAGTCG-ATAATCTTATCTCCCTGAAGTTGCAGAGG
* * * *
8299418 AGCGGATCGAAAT-GATAGATCTTATCTCTCTGAAGTTGCAGAGG
1 AGCAGATTGAAGTCGATA-ATCTTATCTCCCTGAAGTTGCAGAGG
*
8299462 AGTAGAT
1 AGCAGAT
8299469 CGCATCAGAC
Statistics
Matches: 365, Mismatches: 91, Indels: 60
0.71 0.18 0.12
Matches are distributed among these distances:
40 3 0.01
41 51 0.14
42 1 0.00
43 16 0.04
44 249 0.68
45 38 0.10
46 6 0.02
48 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (44 bp):
AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGAGG
Found at i:8300826 original size:16 final size:16
Alignment explanation
Indices: 8300807--8300853 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
8300797 AGTTCATATA
8300807 TTTATCTATATAATT-T
1 TTTAT-TATATAATTAT
*
8300823 TTTATGTATATGCATTAT
1 TTTAT-TATAT-AATTAT
8300841 TTTATTATATAAT
1 TTTATTATATAAT
8300854 ATTATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (16 bp):
TTTATTATATAATTAT
Found at i:8301182 original size:21 final size:21
Alignment explanation
Indices: 8301139--8301191 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
8301129 TAATATATGT
**
8301139 ATATAAT-TTTATGTATTTTG
1 ATATAATATTTATGTATTGGG
*
8301159 ATATAATATTTATTTATTGGG
1 ATATAATATTTATGTATTGGG
*
8301180 ATACTATTATTT
1 ATA-TAATATTT
8301192 TATGAAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 7 0.26
21 13 0.48
22 7 0.26
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (21 bp):
ATATAATATTTATGTATTGGG
Found at i:8306916 original size:32 final size:32
Alignment explanation
Indices: 8306875--8306968 Score: 188
Period size: 32 Copynumber: 2.9 Consensus size: 32
8306865 AAGGTAAGAA
8306875 TTCTATCCTTAATTATAGGGATTCCAACAGAT
1 TTCTATCCTTAATTATAGGGATTCCAACAGAT
8306907 TTCTATCCTTAATTATAGGGATTCCAACAGAT
1 TTCTATCCTTAATTATAGGGATTCCAACAGAT
8306939 TTCTATCCTTAATTATAGGGATTCCAACAG
1 TTCTATCCTTAATTATAGGGATTCCAACAG
8306969 CTAGTCTAGC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (32 bp):
TTCTATCCTTAATTATAGGGATTCCAACAGAT
Found at i:8307402 original size:19 final size:18
Alignment explanation
Indices: 8307367--8307439 Score: 60
Period size: 20 Copynumber: 3.9 Consensus size: 18
8307357 ATCACCCAAA
* *
8307367 AAAAATTATA-AAGTTTT
1 AAAAATTTTAGAATTTTT
8307384 AAAAAGTTTTAGAATTTTTT
1 AAAAA-TTTTAGAA-TTTTT
* *
8307404 AATAATTTTAGATTTTATAT
1 AAAAATTTTAGAATTT-T-T
8307424 AAAAATTTTA-AATTTT
1 AAAAATTTTAGAATTTT
8307440 CAGATGATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
17 5 0.11
18 8 0.18
19 14 0.31
20 18 0.40
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
AAAAATTTTAGAATTTTT
Found at i:8307403 original size:20 final size:19
Alignment explanation
Indices: 8307380--8307439 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
8307370 AATTATAAAG
8307380 TTTTAAAAAGTTTTAGAATT
1 TTTTAAAAA-TTTTAGAATT
*
8307400 TTTTAATAATTTTAG-ATT
1 TTTTAAAAATTTTAGAATT
8307418 TTATATAAAAATTTTA-AATT
1 TT-T-TAAAAATTTTAGAATT
8307438 TT
1 TT
8307440 CAGATGATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 5 0.14
19 7 0.20
20 23 0.66
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTAAAAATTTTAGAATT
Found at i:8314729 original size:24 final size:24
Alignment explanation
Indices: 8314698--8314743 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
8314688 ACTTTTAACC
* *
8314698 TTTTTTTAATACCCAAAACCCTCT
1 TTTTTTTAACAACCAAAACCCTCT
8314722 TTTTTTTAACAACCAAAACCCT
1 TTTTTTTAACAACCAAAACCCT
8314744 AAAACAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (24 bp):
TTTTTTTAACAACCAAAACCCTCT
Found at i:8314876 original size:28 final size:25
Alignment explanation
Indices: 8314845--8314908 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 25
8314835 AAAAATAAAA
8314845 ATTTACCAAAATATTATAACTTTTTTTT
1 ATTTACCAAAATATTAT-A--TTTTTTT
8314873 ATTTACC-AAA-A-TATATTTTTTT
1 ATTTACCAAAATATTATATTTTTTT
8314895 ATTTACCAAAATAT
1 ATTTACCAAAATAT
8314909 ATCAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
22 14 0.42
23 3 0.09
24 2 0.06
25 3 0.09
26 1 0.03
27 3 0.09
28 7 0.21
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTTACCAAAATATTATATTTTTTT
Found at i:8314891 original size:22 final size:22
Alignment explanation
Indices: 8314866--8314910 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8314856 TATTATAACT
8314866 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
8314888 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
8314910 T
1 T
8314911 CAAAAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTTTTATTTACCAAAATATA
Found at i:8315009 original size:27 final size:27
Alignment explanation
Indices: 8314979--8315045 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
8314969 CACCAATGGG
8314979 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
* *
8315006 ATTGGCGGCACCAATGGTGCCAATACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
8315033 ATTGGCGGCACCA
1 ATTGGCGGCACCA
8315046 GTGTATATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAACC
Found at i:8315096 original size:4 final size:4
Alignment explanation
Indices: 8315089--8315229 Score: 78
Period size: 4 Copynumber: 34.2 Consensus size: 4
8315079 AGAAGGAGAG
* * * *
8315089 AGAA AGAA AGAA AGGAA GGAA GGAA GGAGA GGAA AGAA AG-A A-AA AGAA
1 AGAA AGAA AGAA A-GAA AGAA AGAA AGA-A AGAA AGAA AGAA AGAA AGAA
* * *
8315137 GGAA AGAAA AGGAA AG-G AGAA GAGAA GAGAA AAAA AGAA AGAA AG-A
1 AGAA AG-AA A-GAA AGAA AGAA -AGAA -AGAA AGAA AGAA AGAA AGAA
*
8315183 AG-A AGAAA AGGAA AGGAGA AGAA A-AA AGAA AGAA AGAA GGAA AGAA
1 AGAA AG-AA A-GAA A-GA-A AGAA AGAA AGAA AGAA AGAA AGAA AGAA
8315229 A
1 A
8315230 AGGAAATGAG
Statistics
Matches: 114, Mismatches: 10, Indels: 26
0.76 0.07 0.17
Matches are distributed among these distances:
3 15 0.13
4 63 0.55
5 32 0.28
6 4 0.04
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:8315116 original size:31 final size:31
Alignment explanation
Indices: 8315080--8315140 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
8315070 GGGGGGACCA
*
8315080 GAAGGAGAGAGAAAGAAAG-AAAGGAAGGAAG
1 GAAGGAGAG-GAAAGAAAGAAAAAGAAGGAAG
8315111 GAAGGAGAGGAAAGAAAGAAAAAGAAGGAA
1 GAAGGAGAGGAAAGAAAGAAAAAGAAGGAA
8315141 AGAAAAGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 9 0.32
31 19 0.68
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (31 bp):
GAAGGAGAGGAAAGAAAGAAAAAGAAGGAAG
Found at i:8315174 original size:45 final size:44
Alignment explanation
Indices: 8315125--8315266 Score: 172
Period size: 45 Copynumber: 3.3 Consensus size: 44
8315115 GAGAGGAAAG
8315125 AAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAGAGAAAA
1 AAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAGA-AAAA
*
8315170 AAAGAAAGAAAGAA-G-AAGAAAAGGAAAGGAG-A-AGAA-AAAAG
1 AAAG-AA-AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAGAAAAA
*
8315211 AAAG--AAAGAAGGAAAGAAAAGGAAATGAGAAGAGAAGAAAAA
1 AAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAGAAAAA
*
8315253 AAAAAAAGAAGAAG
1 AAAGAAA-AAGAAG
8315267 AAGAGGGAAG
Statistics
Matches: 83, Mismatches: 4, Indels: 20
0.78 0.04 0.19
Matches are distributed among these distances:
37 6 0.07
38 1 0.01
39 15 0.18
40 1 0.01
41 11 0.13
42 8 0.10
43 4 0.05
44 2 0.02
45 26 0.31
46 3 0.04
47 6 0.07
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (44 bp):
AAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAGAAAAA
Found at i:8315233 original size:79 final size:81
Alignment explanation
Indices: 8315091--8315298 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 81
8315081 AAGGAGAGAG
* * * * *
8315091 AAAGAAAGAAAGGAAGGAAG-GAAGGAGAGGA-AAGAAAGAA-AAAGAAGGAAAGAAAAGGAAAG
1 AAAGAAAGAAA-GAA-GAAGAAAAGGAAAGGAGAAGAAAAAAGAAAGAAAGAAAGAAAAGAAAAG
8315153 GAGAA-GAGAAGAGAA-AA
64 GA-AATGAGAAGAGAAGAA
*
8315170 AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAGAAAG-AAGGAAAGAAAAGGA
1 AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAGAAAGAAAGAAAAGAAAAGGA
8315234 AATGAGAAGAGAAGAA
66 AATGAGAAGAGAAGAA
* * *
8315250 AAA-AAAAAAAGAAGAAGAAGAGGGAAGGAAGGAA-AAAAAAGAAAAGAAA
1 AAAGAAAGAAAGAAGAAGAAAAGGAAAGG-A-GAAGAAAAAAG-AAAGAAA
8315299 AGGTATTTTT
Statistics
Matches: 112, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
77 4 0.04
78 14 0.12
79 64 0.57
80 20 0.18
81 10 0.09
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.00
Consensus pattern (81 bp):
AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAGAAAGAAAGAAAAGAAAAGGA
AATGAGAAGAGAAGAA
Found at i:8315261 original size:34 final size:35
Alignment explanation
Indices: 8315123--8315301 Score: 129
Period size: 39 Copynumber: 4.9 Consensus size: 35
8315113 AGGAGAGGAA
*
8315123 AGAA-AGAA-AAAGAAGGAAAGAAAAGGAAAGGAGAAG
1 AGAAGAGAAGAAAGAA--AAAGAAAAGAAAAGGA-AAG
*
8315159 AGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGGAAAGG
1 AGAAGAG-AAGAAAG-AA-AAAGAA-AAGAAAAGGAAA-G
* *
8315199 AGAAGAAAAAAGAAAGAAAGAAGGAAAGAAAAGGAAATG
1 AGAAG--AGAAGAAAGAAA-AAGAAAAGAAAAGGAAA-G
8315238 AGAAGAGAAGAAA-AAAAA-AAAAGAAGAA-GAAGAG
1 AGAAGAGAAGAAAGAAAAAGAAAAGAA-AAGGAA-AG
*
8315272 GGAAG-GAAGGAAA-AAAAAGAAAAGAAAAGG
1 AGAAGAGAA-GAAAGAAAAAGAAAAGAAAAGG
8315302 TATTTTTTTT
Statistics
Matches: 121, Mismatches: 8, Indels: 29
0.77 0.05 0.18
Matches are distributed among these distances:
33 3 0.02
34 25 0.21
35 13 0.11
36 7 0.06
37 9 0.07
38 2 0.02
39 32 0.26
40 23 0.19
41 6 0.05
42 1 0.01
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (35 bp):
AGAAGAGAAGAAAGAAAAAGAAAAGAAAAGGAAAG
Found at i:8315279 original size:45 final size:44
Alignment explanation
Indices: 8315092--8315271 Score: 166
Period size: 45 Copynumber: 4.2 Consensus size: 44
8315082 AGGAGAGAGA
* *
8315092 AAGAA-AGAAAGG-AAGGAAGGAAG-GAGAGGAAAGAAAGAAA-AAG
1 AAGAAGAGAAAGGAAAGG-A-GAAGAGA-AGAAAAAAAAGAAAGAAG
8315135 AAGGAA-AGAAAAGGAAAGGAGAAGAGAAGAGAAAAAAAGAAAGAAAG
1 AA-GAAGAG-AAAGGAAAGGAGAAGAGAAGA-AAAAAAAGAAAG-AAG
*
8315182 AAGAAGA-AAAGGAAAGGAG-A-AGAA-AAAAGAAAGAAAGAAG
1 AAGAAGAGAAAGGAAAGGAGAAGAGAAGAAAAAAAAGAAAGAAG
* * *
8315222 GA-AAGA-AAAGGAAATGAGAAGAGAAGAAAAAAAAAAAAGAAG
1 AAGAAGAGAAAGGAAAGGAGAAGAGAAGAAAAAAAAGAAAGAAG
8315264 AAGAAGAG
1 AAGAAGAG
8315272 GGAAGGAAGG
Statistics
Matches: 116, Mismatches: 8, Indels: 25
0.78 0.05 0.17
Matches are distributed among these distances:
39 15 0.13
40 5 0.04
41 15 0.13
42 16 0.14
43 10 0.09
44 12 0.10
45 30 0.26
46 7 0.06
47 6 0.05
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.01
Consensus pattern (44 bp):
AAGAAGAGAAAGGAAAGGAGAAGAGAAGAAAAAAAAGAAAGAAG
Found at i:8315296 original size:5 final size:5
Alignment explanation
Indices: 8315121--8315300 Score: 70
Period size: 5 Copynumber: 35.8 Consensus size: 5
8315111 GAAGGAGAGG
* * * * *
8315121 AAAG- AAAGA AAA-A GAAGG AAAGA AAAGGA AAGGA GAAGA GAAGA GAAA-A
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAA-GA AAAGA AAAGA AAAGA -AAAGA
* * *
8315170 AAAG- AAAG- AAAGA AGAAGA AAAGGA AAGGA GAAGA AAAAA GAAAGAA
1 AAAGA AAAGA AAAGA A-AAGA AAA-GA AAAGA AAAGA AAAGA -AAAG-A
* * * *
8315217 AGAAGG AAAGA AAAGGA AATGA GAAGA GAAGA AAA-A AAA-A AAAGA AGAAGA
1 A-AAGA AAAGA AAA-GA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA A-AAGA
* * * * *
8315268 AGAGG GAAGG AAGGA AAA-A AAAGA AAAGA AAAG
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAG
8315301 GTATTTTTTT
Statistics
Matches: 133, Mismatches: 28, Indels: 29
0.70 0.15 0.15
Matches are distributed among these distances:
4 30 0.23
5 70 0.53
6 29 0.22
7 4 0.03
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (5 bp):
AAAGA
Found at i:8316002 original size:78 final size:74
Alignment explanation
Indices: 8315920--8316061 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 74
8315910 TATTTCGGGT
*
8315920 TTTTTACCAAA-ATATTACAAAAAATAAAAAAAAAATACGAAAATATTATAAAATTTTTTTATTT
1 TTTTTA-CAAATATATTA-AAAAAAT--AAAAAAAA-ACCAAAATATTATAAAATTTTTTTATTT
8315984 ACCAGAATAATGGG
61 ACCAGAATAATGGG
* * * **
8315998 TTTTTACAAATATATTAAAAAAATTAAAAATAACCAAAATGTTATAAGTTTTTTTTATTTACCA
1 TTTTTACAAATATATTAAAAAAATAAAAAAAAACCAAAATATTATAAAATTTTTTTATTTACCA
8316062 AAACATATTT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
74 28 0.49
75 6 0.11
77 11 0.19
78 12 0.21
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (74 bp):
TTTTTACAAATATATTAAAAAAATAAAAAAAAACCAAAATATTATAAAATTTTTTTATTTACCAG
AATAATGGG
Found at i:8316075 original size:22 final size:22
Alignment explanation
Indices: 8316047--8316091 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
8316037 TGTTATAAGT
8316047 TTTTTTTATTTACCAAAACATA
1 TTTTTTTATTTACCAAAACATA
*
8316069 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAACATA
8316091 T
1 T
8316092 AAAAAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTTTTATTTACCAAAACATA
Found at i:8321459 original size:12 final size:12
Alignment explanation
Indices: 8321444--8321468 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8321434 ATTTATACTT
8321444 AAAATAATACAC
1 AAAATAATACAC
8321456 AAAATAATACAC
1 AAAATAATACAC
8321468 A
1 A
8321469 CTAAAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAATACAC
Found at i:8321496 original size:36 final size:36
Alignment explanation
Indices: 8321450--8321560 Score: 111
Period size: 26 Copynumber: 3.4 Consensus size: 36
8321440 ACTTAAAATA
*
8321450 ATACACAAAATAATACACACTAAAATTATTAATTTT
1 ATACTCAAAATAATACACACTAAAATTATTAATTTT
*
8321486 ATACTC--AA-AAT--A-A-T---ATTAATAATTTT
1 ATACTCAAAATAATACACACTAAAATTATTAATTTT
8321512 ATACTCAAAATAATACACACTAAAATTATTAA-TTT
1 ATACTCAAAATAATACACACTAAAATTATTAATTTT
*
8321547 -TACTAAAAATAATA
1 ATACTCAAAATAATA
8321561 ACTAACTAAC
Statistics
Matches: 61, Mismatches: 4, Indels: 22
0.70 0.05 0.25
Matches are distributed among these distances:
26 17 0.28
28 2 0.03
29 4 0.07
30 1 0.02
31 2 0.03
32 1 0.02
33 4 0.07
34 15 0.25
35 3 0.05
36 12 0.20
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (36 bp):
ATACTCAAAATAATACACACTAAAATTATTAATTTT
Found at i:8321724 original size:3 final size:3
Alignment explanation
Indices: 8321716--8321769 Score: 99
Period size: 3 Copynumber: 17.7 Consensus size: 3
8321706 TCTTAATACT
8321716 AAC AAC AAC AAC AAC AAC AAC AAAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC -AAC AAC AAC AAC AAC AAC AAC AAC
8321762 AAC AAC AA
1 AAC AAC AA
8321770 TAATAATAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:8321857 original size:19 final size:21
Alignment explanation
Indices: 8321833--8321871 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8321823 ACTAAAACAA
*
8321833 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
8321852 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
8321872 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:8321936 original size:10 final size:11
Alignment explanation
Indices: 8321896--8321935 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
8321886 AAAAAAATAC
8321896 CTTCTTTTTCT
1 CTTCTTTTTCT
*
8321907 CCTCTTTTTCT
1 CTTCTTTTTCT
8321918 C-TCTTTTTCT
1 CTTCTTTTTCT
8321928 CTTCTTTT
1 CTTCTTTT
8321936 CCGCAACAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:8322139 original size:13 final size:12
Alignment explanation
Indices: 8322121--8322154 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
8322111 ATCGATCTGA
8322121 TTTTTTTTGCAAG
1 TTTTTTTTG-AAG
8322134 TTTTTTTT-AAG
1 TTTTTTTTGAAG
8322145 TTTTTTTTGA
1 TTTTTTTTGA
8322155 TATATTTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 11 0.55
12 1 0.05
13 8 0.40
ACGTcount: A:0.15, C:0.03, G:0.12, T:0.71
Consensus pattern (12 bp):
TTTTTTTTGAAG
Found at i:8322197 original size:21 final size:20
Alignment explanation
Indices: 8322156--8322196 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8322146 TTTTTTTGAT
8322156 ATATTTTGGTAAATAAAAAA
1 ATATTTTGGTAAATAAAAAA
8322176 ATATTTTGGTAAATAAAAAA
1 ATATTTTGGTAAATAAAAAA
8322196 A
1 A
8322197 AGTTATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (20 bp):
ATATTTTGGTAAATAAAAAA
Found at i:8322421 original size:6 final size:6
Alignment explanation
Indices: 8322387--8322419 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
8322377 TATTCTCAGC
8322387 TTTTCT TTTTCT TTTTCT TTTTCT TTTT-T TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
8322420 TTACAATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTCT
Found at i:8324412 original size:17 final size:17
Alignment explanation
Indices: 8324385--8324430 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
8324375 TAAAAAATCG
8324385 TGTTTCAAAAATTT-TCA
1 TGTTTC-AAAATTTCTCA
*
8324402 TGTTTTCAAAATTTCTCG
1 TG-TTTCAAAATTTCTCA
8324420 TGTTTCAAAAT
1 TGTTTCAAAAT
8324431 AATAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (17 bp):
TGTTTCAAAATTTCTCA
Found at i:8324530 original size:34 final size:35
Alignment explanation
Indices: 8324488--8324553 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
8324478 TTTTTTTTAA
*
8324488 AAAAAATTTTCGTG-TTTCAAAAATTCTCGTGAAT
1 AAAAAATTTTCGTGTTTTCAAAAATTCCCGTGAAT
8324522 AAAAAATTTTCGTGTTTTCAAAAATTCCCGTG
1 AAAAAATTTTCGTGTTTTCAAAAATTCCCGTG
8324554 TTTGAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 14 0.47
35 16 0.53
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (35 bp):
AAAAAATTTTCGTGTTTTCAAAAATTCCCGTGAAT
Done.