Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 28 of 185
Found at i:8324589 original size:18 final size:18
Alignment explanation
Indices: 8324488--8324601 Score: 93
Period size: 17 Copynumber: 6.8 Consensus size: 18
8324478 TTTTTTTTAA
*
8324488 AAAAAATTTTCGTGTTTC
1 AAAAAATTCTCGTGTTTC
**
8324506 -AAAAATTCTCGTGAAT-
1 AAAAAATTCTCGTGTTTC
*
8324522 AAAAAATTTTCGTGTTTTC
1 AAAAAATTCTCGTG-TTTC
*
8324541 -AAAAATTCCCGTGTTT-
1 AAAAAATTCTCGTGTTTC
*
8324557 GAAAAA---T-GT-TTTC
1 AAAAAATTCTCGTGTTTC
8324570 AAAAAATTCTCGTGTTTC
1 AAAAAATTCTCGTGTTTC
*
8324588 AAAAAACTCTCGTG
1 AAAAAATTCTCGTG
8324602 GATATTTTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
12 3 0.04
13 7 0.09
16 1 0.01
17 35 0.47
18 29 0.39
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
AAAAAATTCTCGTGTTTC
Found at i:8324591 original size:29 final size:29
Alignment explanation
Indices: 8324534--8324592 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
8324524 AAAATTTTCG
8324534 TGTTTTCAAAAATTCCCGTGTTTGAAAAA
1 TGTTTTCAAAAATTCCCGTGTTTGAAAAA
* *
8324563 TGTTTTCAAAAAATTCTCGTGTTTCAAAAA
1 TGTTTTC-AAAAATTCCCGTGTTTGAAAAA
8324593 ACTCTCGTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (29 bp):
TGTTTTCAAAAATTCCCGTGTTTGAAAAA
Found at i:8324642 original size:18 final size:18
Alignment explanation
Indices: 8324621--8324664 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
8324611 TTGACGTTAT
8324621 CGTGTTTTCAAAAATTTC
1 CGTGTTTTCAAAAATTTC
* *
8324639 CGTG-TTTGAAAAATTTT
1 CGTGTTTTCAAAAATTTC
8324656 CGTGTTTTC
1 CGTGTTTTC
8324665 GTGTTTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.48
Consensus pattern (18 bp):
CGTGTTTTCAAAAATTTC
Found at i:8324660 original size:106 final size:105
Alignment explanation
Indices: 8324523--8324802 Score: 323
Period size: 105 Copynumber: 2.6 Consensus size: 105
8324513 CTCGTGAATA
* * **
8324523 AAAAATTTTCGTGTTTTCAAAAATTCCCGTGTTTGAAAAATGTTTTC-AAAAAATTCTCGTGTTT
1 AAAAATTTCCGTG-TTTGAAAAATTTTCGTGTTT---AAATGTTTTCAAAAAAATTCTCGTGTTT
*
8324587 CAAAAAACTCTCGTGGATA-TTTTTTTGACGTTATCGTGTTTTC
62 CAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTGTTTTC
***
8324630 AAAAATTTCCGTGTTTGAAAAATTTTCGTGTTTTCGTGTTTTCAAAAAAAATTCTCGTGTTTCAA
1 AAAAATTTCCGTGTTTGAAAAATTTTCGTGTTTAAATGTTTTC-AAAAAAATTCTCGTGTTTCAA
*
8324695 AAAACTCTCGTGAATATTTTTTTTGATGTTATCGTGTTTTC
65 AAAACTCTCGTGAATATTTTTTTTGACGTTATCGTGTTTTC
* * * *** * * *
8324736 AAAAAATTCTCGTGTTTGACAAATTTTCATGTTTTCGTG-TTTAAAAAAAATTCTCGTATTTCGA
1 AAAAATTTC-CGTGTTTGAAAAATTTTCGTGTTTAAATGTTTTCAAAAAAATTCTCGTGTTTCAA
8324800 AAA
65 AAA
8324803 TTTTCTTGTT
Statistics
Matches: 154, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
103 7 0.05
105 57 0.37
106 51 0.33
107 39 0.25
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.44
Consensus pattern (105 bp):
AAAAATTTCCGTGTTTGAAAAATTTTCGTGTTTAAATGTTTTCAAAAAAATTCTCGTGTTTCAAA
AAACTCTCGTGAATATTTTTTTTGACGTTATCGTGTTTTC
Found at i:8324698 original size:105 final size:107
Alignment explanation
Indices: 8324563--8324802 Score: 375
Period size: 105 Copynumber: 2.3 Consensus size: 107
8324553 GTTTGAAAAA
*
8324563 TGTTTTC--AAAAAATTCTCGTGTTTCAAAAAACTCTCGTGGATA-TTTTTTTGACGTTATCGTG
1 TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTG
* *
8324625 TTTTCAAAAATTTC-CGTGTTTGAAAAATTTTCGTGTTTTCG
66 TTTTCAAAAAATTCTCGTGTTTGAAAAATTTTCATGTTTTCG
*
8324666 TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGATGTTATCGTG
1 TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTG
*
8324731 TTTTCAAAAAATTCTCGTGTTTGACAAATTTTCATGTTTTCG
66 TTTTCAAAAAATTCTCGTGTTTGAAAAATTTTCATGTTTTCG
* *
8324773 TG-TTT-AAAAAAAATTCTCGTATTTCGAAAA
1 TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAA
8324803 TTTTCTTGTT
Statistics
Matches: 126, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
103 7 0.06
105 58 0.46
106 34 0.27
107 27 0.21
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.45
Consensus pattern (107 bp):
TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTG
TTTTCAAAAAATTCTCGTGTTTGAAAAATTTTCATGTTTTCG
Found at i:8324769 original size:36 final size:36
Alignment explanation
Indices: 8324726--8325014 Score: 252
Period size: 37 Copynumber: 7.8 Consensus size: 36
8324716 TTTGATGTTA
*
8324726 TCGTGTTTTC-AAAAAATTCTCGTGTTTGACAAATTT
1 TCGTGTTTTCAAAAAAATTCTCGTGTTTCA-AAATTT
* *
8324762 TCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGAAAATTT
1 TC--G---T-GT-TTTCAAAAAAATTCTCGTGTTTC-AAAATTT
* *
8324806 TCTTGTTTTCAAAAAAATTCT-ATGTTTCATAAATTT
1 TCGTGTTTTCAAAAAAATTCTCGTGTTTCA-AAATTT
* * *
8324842 CCGTGTTTTCAAAAAAA-TCCCGTCTTTCAAAATTT
1 TCGTGTTTTCAAAAAAATTCTCGTGTTTCAAAATTT
* *
8324877 TTGTGTTTTCAAAAAAATTGAC-CGCGTTTCATAAATTT
1 TCGTGTTTTCAAAAAAATT--CTCGTGTTTCA-AAATTT
* * *
8324915 CCGTGTTTTC-AAAAAATTCT-GTCTTTTAAAATTT
1 TCGTGTTTTCAAAAAAATTCTCGTGTTTCAAAATTT
8324949 TCGTGTTTTCAAAAAAATTGAC-CGTGTTTCATAAATTT
1 TCGTGTTTTCAAAAAAATT--CTCGTGTTTCA-AAATTT
*
8324987 TCGTG-TTTCAAAAAAATCCTCGTGTTTC
1 TCGTGTTTTCAAAAAAATTCTCGTGTTTC
8325015 GTATTTTATC
Statistics
Matches: 206, Mismatches: 25, Indels: 44
0.75 0.09 0.16
Matches are distributed among these distances:
34 15 0.07
35 39 0.19
36 43 0.21
37 48 0.23
38 29 0.14
39 1 0.00
41 1 0.00
42 2 0.01
43 3 0.01
44 24 0.12
45 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (36 bp):
TCGTGTTTTCAAAAAAATTCTCGTGTTTCAAAATTT
Found at i:8324774 original size:44 final size:44
Alignment explanation
Indices: 8324715--8324815 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
8324705 TGAATATTTT
* * ** *
8324715 TTTTGATGTTATCGTGTTTTCAAAAAATTCTCGTGTTT-GACAAA
1 TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGA-AAA
8324759 TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGAAAA
1 TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGAAAA
*
8324803 TTTTCTTGTTTTC
1 TTTTCATGTTTTC
8324816 AAAAAAATTC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 48 0.96
45 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.50
Consensus pattern (44 bp):
TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGAAAA
Found at i:8324802 original size:19 final size:18
Alignment explanation
Indices: 8324779--8324826 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
8324769 TTCGTGTTTA
8324779 AAAAAAATTCTCGTATTTC
1 AAAAAAATTCTCGT-TTTC
* ** *
8324798 GAAAATTTTCTTGTTTTC
1 AAAAAAATTCTCGTTTTC
8324816 AAAAAAATTCT
1 AAAAAAATTCT
8324827 ATGTTTCATA
Statistics
Matches: 22, Mismatches: 7, Indels: 1
0.73 0.23 0.03
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (18 bp):
AAAAAAATTCTCGTTTTC
Found at i:8324913 original size:73 final size:72
Alignment explanation
Indices: 8324771--8325014 Score: 298
Period size: 72 Copynumber: 3.4 Consensus size: 72
8324761 TTCATGTTTT
* * * **
8324771 CGTGTTTAAAAAAAATTCTCGTATTTCGAAAATTTTCT-TGTTTTCAAAAAAATT--CTATGTTT
1 CGTGTTTCAAAAAAA-TCCCGTCTTTC-AAAATTTT-TGTGTTTTCAAAAAAATTGACCGTGTTT
8324833 CATAAATTTC
63 CATAAATTTC
*
8324843 CGTGTTTTCAAAAAAATCCCGTCTTTCAAAATTTTTGTGTTTTCAAAAAAATTGACCGCGTTTCA
1 CGTG-TTTCAAAAAAATCCCGTCTTTCAAAATTTTTGTGTTTTCAAAAAAATTGACCGTGTTTCA
8324908 TAAATTTC
65 TAAATTTC
* * * *
8324916 CGTGTTTTC-AAAAAATTCTGTCTTTTAAAATTTTCGTGTTTTCAAAAAAATTGACCGTGTTTCA
1 CGTG-TTTCAAAAAAATCCCGTCTTTCAAAATTTTTGTGTTTTCAAAAAAATTGACCGTGTTTCA
*
8324980 TAAATTTT
65 TAAATTTC
*
8324988 CGTGTTTCAAAAAAATCCTCGTGTTTC
1 CGTGTTTCAAAAAAATCC-CGTCTTTC
8325015 GTATTTTATC
Statistics
Matches: 150, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
70 1 0.01
71 28 0.19
72 82 0.55
73 39 0.26
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.43
Consensus pattern (72 bp):
CGTGTTTCAAAAAAATCCCGTCTTTCAAAATTTTTGTGTTTTCAAAAAAATTGACCGTGTTTCAT
AAATTTC
Found at i:8324924 original size:18 final size:18
Alignment explanation
Indices: 8324794--8325000 Score: 88
Period size: 18 Copynumber: 11.5 Consensus size: 18
8324784 AATTCTCGTA
* * *
8324794 TTTCGAAAATTTTCTTGT
1 TTTCAAAAATTTCCGTGT
* **
8324812 TTTCAAAAAAATTCTATG-
1 TTTC-AAAAATTTCCGTGT
*
8324830 TTTCATAAATTTCCGTGT
1 TTTCAAAAATTTCCGTGT
* * *
8324848 TTTCAAAAAAATCCCGT-C
1 TTTC-AAAAATTTCCGTGT
**
8324866 TTTC-AAAATTTTTGTGT
1 TTTCAAAAATTTCCGTGT
* *
8324883 TTTCAAAAAAATTGACCGCG-
1 TTTC--AAAAATT-TCCGTGT
*
8324903 TTTCATAAATTTCCGTGT
1 TTTCAAAAATTTCCGTGT
* * *
8324921 TTTCAAAAAATTCTGTCT
1 TTTCAAAAATTTCCGTGT
*
8324939 TTT--AAAATTTTCGTGT
1 TTTCAAAAATTTCCGTGT
*
8324955 TTTCAAAAAAATTGACCGTG-
1 TTTC--AAAAATT-TCCGTGT
* *
8324975 TTTCATAAATTTTCGTG-
1 TTTCAAAAATTTCCGTGT
8324992 TTTCAAAAA
1 TTTCAAAAA
8325001 AATCCTCGTG
Statistics
Matches: 136, Mismatches: 39, Indels: 29
0.67 0.19 0.14
Matches are distributed among these distances:
16 19 0.14
17 29 0.21
18 45 0.33
19 17 0.12
20 20 0.15
21 6 0.04
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.43
Consensus pattern (18 bp):
TTTCAAAAATTTCCGTGT
Found at i:8325093 original size:18 final size:18
Alignment explanation
Indices: 8325058--8325094 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8325048 TTTCAAAAAG
8325058 AAAATTCGTGTTTCCAAA
1 AAAATTCGTGTTTCCAAA
8325076 AAAATCTCGTGTTT-CAAA
1 AAAAT-TCGTGTTTCCAAA
8325094 A
1 A
8325095 TTTTCGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (18 bp):
AAAATTCGTGTTTCCAAA
Found at i:8325158 original size:16 final size:16
Alignment explanation
Indices: 8325139--8325170 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8325129 TCAAAAATGC
8325139 TTGTATTTAAAAAAAA
1 TTGTATTTAAAAAAAA
*
8325155 TTGTGTTTAAAAAAAA
1 TTGTATTTAAAAAAAA
8325171 AGTGGTTGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (16 bp):
TTGTATTTAAAAAAAA
Found at i:8336172 original size:13 final size:12
Alignment explanation
Indices: 8336150--8336193 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
8336140 AAAGTAGACA
8336150 AAAAATAAAAAAC
1 AAAAA-AAAAAAC
8336163 AACAAAAAAAAAC
1 AA-AAAAAAAAAC
*
8336176 AAAAAAGAAAAAG
1 AAAAAA-AAAAAC
8336189 AAAAA
1 AAAAA
8336194 CCAAGATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 4 0.14
13 21 0.75
14 3 0.11
ACGTcount: A:0.86, C:0.07, G:0.05, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:8336192 original size:20 final size:20
Alignment explanation
Indices: 8336149--8336194 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
8336139 AAAAGTAGAC
*
8336149 AAAAAATAAAAAACAACAAA
1 AAAAAACAAAAAACAACAAA
*
8336169 AAAAAACAAAAAAGAA-AAA
1 AAAAAACAAAAAACAACAAA
*
8336188 GAAAAAC
1 AAAAAAC
8336195 CAAGATGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.85, C:0.09, G:0.04, T:0.02
Consensus pattern (20 bp):
AAAAAACAAAAAACAACAAA
Found at i:8337277 original size:76 final size:76
Alignment explanation
Indices: 8337151--8337986 Score: 807
Period size: 76 Copynumber: 10.7 Consensus size: 76
8337141 TTTTTTTATT
*
8337151 TTTTTTAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
8337216 TTAAATTTTCG
66 TTAAATTTTCG
8337227 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
* *
8337292 TTAAATTTCCT
66 TTAAATTTTCG
* *
8337303 TTTTTCAAAAAAATAAACTCATAATACAGAGGTGAGTTGAGCCTCGAGTCATGCCGAGGTATTTC
1 TTTTTC--AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
8337368 TTTTAAATTTTCG
64 TTTTAAATTTTCG
8337381 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
* *
8337446 TCAAATTTTCA
66 TTAAATTTTCG
*
8337457 TTTTT-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCAAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
8337521 TTAAATTTTCG
66 TTAAATTTTCG
* *
8337532 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT-CCTGAGGTA--
1 --TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCC-GAGGTATT
*
8337594 T-TTTTCAATTTTCG
62 TCTTTTAAATTTTCG
* * * * * *
8337608 TGTTTTCAAAAAAAAATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACGT
1 T-TTTTC----AAAAATC-------AACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGC
* * *
8337673 CGAGGTA-TT-TTTCAATTTTTGG
53 CGAGGTATTTCTTTTAAATTTTCG
* * * *** *
8337695 TTTTCACAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCATATCCTGAGGTA--
1 TTTT-TCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCAT-GCC-GAGGTATT
* *
8337758 T-TTTTCAA-TTTCTA
62 TCTTTTAAATTTTC-G
* * * * * *
8337772 TTTTTCAAAAA-AAATCGGATCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCATATACCGATGT
1 TTTTTCAAAAATCAA-C---TCATAATAC-AGAGGTGAGTTGAGCCTCGGGTC--ATGCCGAGGT
8337836 ATTTCTTTTAAA-TTTCTG
59 ATTTCTTTTAAATTTTC-G
* * * * **
8337854 CTTTTCAAAAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTCGGGTCACATATCGAGGTAT
1 TTTTTC--AAAAATCAACTCATAAT-ACAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTAT
* *
8337919 TTCTTTAAAATTTCCG
61 TTCTTTTAAATTTTCG
* * * * *
8337935 TTTCTCCAAAATCAACTCATAATGCGAGAGGTGAGTTGAGACTCGGATCATG
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATG
8337987 TTGAGGTACT
Statistics
Matches: 654, Mismatches: 64, Indels: 83
0.82 0.08 0.10
Matches are distributed among these distances:
74 1 0.00
75 74 0.11
76 208 0.32
77 19 0.03
78 98 0.15
79 105 0.16
80 2 0.00
81 54 0.08
82 20 0.03
83 8 0.01
84 6 0.01
85 2 0.00
86 44 0.07
87 13 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (76 bp):
TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
TTAAATTTTCG
Found at i:8337354 original size:154 final size:155
Alignment explanation
Indices: 8337051--8337986 Score: 875
Period size: 154 Copynumber: 5.9 Consensus size: 155
8337041 AGAATTATAT
*
8337051 TTTTAAATTTCTGCTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTAAATTT-T-CGTTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCA
* * * ** ** ***
8337116 CGCTGAGGTATTTTTAATTTATGTCTTTTTTTATTTTTTTTAAAAATCAACTCATAATAC-AGAG
63 TGCCGAGGTATTTCT--TTTA---AATTTCCT-TTTTTCAAAAAAATCAACTCATAATACGAGAG
8337180 GTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
122 GTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
8337214 TTTTAAATTTTCGTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGC
1 TTTTAAATTTTCGTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGC
*
8337279 CGAGGTATTTCTTTTAAATTTCCTTTTTTCAAAAAAATAAACTCATAATAC-AGAGGTGAGTTGA
66 CGAGGTATTTCTTTTAAATTTCCTTTTTTCAAAAAAATCAACTCATAATACGAGAGGTGAGTTGA
*
8337343 GCCTCGAGTCATGCCGAGGTATTTC
131 GCCTCGGGTCATGCCGAGGTATTTC
8337368 TTTTAAATTTTCGTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGC
1 TTTTAAATTTTCGTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGC
* * *
8337433 CGAGGTATTTCTTTCAAATTTTCATTTTT---AAAAATCAACTCATAATAC-AGAGGTGAGTTGA
66 CGAGGTATTTCTTTTAAATTTCCTTTTTTCAAAAAAATCAACTCATAATACGAGAGGTGAGTTGA
*
8337494 GCCTCGGGTCATGCCAAGGTATTTC
131 GCCTCGGGTCATGCCGAGGTATTTC
* *
8337519 TTTTAAATTTTCGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTAAATTTTCG--TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCA
* * * * * *
8337584 T-CCTGAGGTA-TT-TTTCAATTTTCGTGTTTTCAAAAAAAAATCAAAAATTAACTCATATTGCG
63 TGCC-GAGGTATTTCTTTTAAATTTCCTTTTTTC--AAAAAAATC-------AACTCATAATACG
* * * *
8337646 AGAGGTGAGTTGAGCCTTGAGTCACGTCGAGGTA-TT-
118 AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
* * * * * * ***
8337682 TTTCAATTTTTGGTTTTCACAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCAT
1 TTTTAAATTTTCGTTTT-TCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCAT
* * * * *
8337747 ATCCTGAGGTA--T-TTTTCAATTT-CTATTTTTCAAAAAAAATCGGA-TCATATTGCGAGAGGT
64 -GCC-GAGGTATTTCTTTTAAATTTCCT-TTTTTC-AAAAAAATC-AACTCATAATACGAGAGGT
* * *
8337807 GAGTTGAGTCTCGGGTCATATACCGATGTATTTC
124 GAGTTGAGCCTCGGGTC--ATGCCGAGGTATTTC
* * * *
8337841 TTTTAAA-TTTCTGCTTTTCAAAAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTCGGGTC
1 TTTTAAATTTTC-GTTTTTC--AAAAATCAACTCATAAT-ACAGAGGTGAGTTGAGCCTCGGGT-
** * * * * *
8337905 ACATATCGAGGTATTTCTTTAAAATTTCCGTTTCTC--CAAAATCAACTCATAATGCGAGAGGTG
61 -CATGCCGAGGTATTTCTTTTAAATTTCCTTTTTTCAAAAAAATCAACTCATAATACGAGAGGTG
* *
8337968 AGTTGAGACTCGGATCATG
125 AGTTGAGCCTCGGGTCATG
8337987 TTGAGGTACT
Statistics
Matches: 661, Mismatches: 76, Indels: 77
0.81 0.09 0.09
Matches are distributed among these distances:
151 67 0.10
152 13 0.02
153 27 0.04
154 182 0.28
155 34 0.05
156 1 0.00
157 14 0.02
158 12 0.02
159 10 0.02
160 132 0.20
161 13 0.02
162 59 0.09
163 46 0.07
164 22 0.03
165 29 0.04
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (155 bp):
TTTTAAATTTTCGTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGC
CGAGGTATTTCTTTTAAATTTCCTTTTTTCAAAAAAATCAACTCATAATACGAGAGGTGAGTTGA
GCCTCGGGTCATGCCGAGGTATTTC
Found at i:8337683 original size:86 final size:86
Alignment explanation
Indices: 8337538--8337785 Score: 288
Period size: 86 Copynumber: 3.0 Consensus size: 86
8337528 TTCGTTTTTT
* * *
8337538 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCATCCT-GAGGTATTTTTCAA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCA-CATCGAGGTATTTTTCAA
8337602 TTTTCGTGTTTTCAAAAAAAAA
65 TTTTCGTGTTTTCAAAAAAAAA
* *
8337624 TCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACGTCGAGGTATTTTTCAAT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATCGAGGTATTTTTCAAT
*
8337689 TTTTG-GTTTTC--------A
66 TTTCGTGTTTTCAAAAAAAAA
* *
8337701 -CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCATATCCTGAGGTATTTTTCA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACAT-C-GAGGTATTTTTCA
*
8337765 A-TTTC-TATTTTTCAAAAAAAA
64 ATTTTCGT-GTTTTCAAAAAAAA
8337786 TCGGATCATA
Statistics
Matches: 138, Mismatches: 11, Indels: 26
0.79 0.06 0.15
Matches are distributed among these distances:
76 44 0.32
77 5 0.04
78 19 0.14
85 8 0.06
86 62 0.45
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (86 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATCGAGGTATTTTTCAAT
TTTCGTGTTTTCAAAAAAAAA
Found at i:8339678 original size:17 final size:17
Alignment explanation
Indices: 8339651--8339696 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
8339641 TAAAAAATCG
8339651 TGTTTCAAAAATTT-TCA
1 TGTTTC-AAAATTTCTCA
*
8339668 TGTTTTCAAAATTTCTCG
1 TG-TTTCAAAATTTCTCA
8339686 TGTTTCAAAAT
1 TGTTTCAAAAT
8339697 AATAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (17 bp):
TGTTTCAAAATTTCTCA
Found at i:8339788 original size:17 final size:17
Alignment explanation
Indices: 8339760--8339862 Score: 92
Period size: 17 Copynumber: 6.3 Consensus size: 17
8339750 TTAAAAAAAA
8339760 AAAAATTC-CGTGTTTC
1 AAAAATTCTCGTGTTTC
** *
8339776 AAAAATTCTCGTGAATA
1 AAAAATTCTCGTGTTTC
*
8339793 AAAAATTTTCGTGTTTTC
1 AAAAATTCTCGTG-TTTC
* *
8339811 AAAAATTCCCGTGTTTG
1 AAAAATTCTCGTGTTTC
8339828 AAAAA---T-GT-TTTC
1 AAAAATTCTCGTGTTTC
8339840 AAAAAATTCTCGTGTTTC
1 -AAAAATTCTCGTGTTTC
8339858 AAAAA
1 AAAAA
8339863 ACTCTCGTGA
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
12 3 0.04
13 7 0.10
16 9 0.13
17 32 0.48
18 16 0.24
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.37
Consensus pattern (17 bp):
AAAAATTCTCGTGTTTC
Found at i:8339796 original size:35 final size:35
Alignment explanation
Indices: 8339758--8339823 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
8339748 TTTTAAAAAA
*
8339758 AAAAAAATTCCGTG-TTTCAAAAATTCTCGTGAAT
1 AAAAAAATTCCGTGTTTTCAAAAATTCCCGTGAAT
* *
8339792 AAAAAATTTTCGTGTTTTCAAAAATTCCCGTG
1 AAAAAAATTCCGTGTTTTCAAAAATTCCCGTG
8339824 TTTGAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 12 0.43
35 16 0.57
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (35 bp):
AAAAAAATTCCGTGTTTTCAAAAATTCCCGTGAAT
Found at i:8339861 original size:29 final size:29
Alignment explanation
Indices: 8339804--8339862 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
8339794 AAAATTTTCG
8339804 TGTTTTCAAAAATTCCCGTGTTTGAAAAA
1 TGTTTTCAAAAATTCCCGTGTTTGAAAAA
* *
8339833 TGTTTTCAAAAAATTCTCGTGTTTCAAAAA
1 TGTTTTC-AAAAATTCCCGTGTTTGAAAAA
8339863 ACTCTCGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (29 bp):
TGTTTTCAAAAATTCCCGTGTTTGAAAAA
Found at i:8339863 original size:18 final size:18
Alignment explanation
Indices: 8339759--8339871 Score: 93
Period size: 18 Copynumber: 6.8 Consensus size: 18
8339749 TTTAAAAAAA
8339759 AAAAAATTC-CGTGTTTC
1 AAAAAATTCTCGTGTTTC
**
8339776 -AAAAATTCTCGTGAAT-
1 AAAAAATTCTCGTGTTTC
*
8339792 AAAAAATTTTCGTGTTTTC
1 AAAAAATTCTCGTG-TTTC
*
8339811 -AAAAATTCCCGTGTTT-
1 AAAAAATTCTCGTGTTTC
*
8339827 GAAAAA---T-GT-TTTC
1 AAAAAATTCTCGTGTTTC
8339840 AAAAAATTCTCGTGTTTC
1 AAAAAATTCTCGTGTTTC
*
8339858 AAAAAACTCTCGTG
1 AAAAAATTCTCGTG
8339872 AATATTTTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
12 3 0.04
13 7 0.09
16 9 0.12
17 27 0.36
18 29 0.39
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
AAAAAATTCTCGTGTTTC
Found at i:8339912 original size:18 final size:18
Alignment explanation
Indices: 8339891--8339934 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
8339881 TTGACGTTAT
8339891 CGTGTTTTCAAAAATTTC
1 CGTGTTTTCAAAAATTTC
* *
8339909 CGTG-TTTGAAAAATTTT
1 CGTGTTTTCAAAAATTTC
8339926 CGTGTTTTC
1 CGTGTTTTC
8339935 GTGTTTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.48
Consensus pattern (18 bp):
CGTGTTTTCAAAAATTTC
Found at i:8339921 original size:106 final size:105
Alignment explanation
Indices: 8339793--8340030 Score: 309
Period size: 106 Copynumber: 2.2 Consensus size: 105
8339783 CTCGTGAATA
* *
8339793 AAAAATTTTCGTGTTTTCAAAAATTCCCGTGTTTGAAAAATGTTTTC-AAAAAATTCTCGTGTTT
1 AAAAATTTCCGTG-TTTGAAAAATTCCCGTGTTT---AAATGTTTTCAAAAAAATTCTCGTGTTT
8339857 CAAAAAACTCTCGTGAATA-TTTTTTTGACGTTATCGTGTTTTC
62 CAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTGTTTTC
** *** *
8339900 AAAAATTTCCGTGTTTGAAAAATTTTCGTGTTTTCGTGTTTTCAAAAAAAATTCTTGTGTTTCAA
1 AAAAATTTCCGTGTTTGAAAAATTCCCGTGTTTAAATGTTTTC-AAAAAAATTCTCGTGTTTCAA
*
8339965 AAAACTCTCGTGAATATTTTTTTTGATGTTATCGTGTTTTC
65 AAAACTCTCGTGAATATTTTTTTTGACGTTATCGTGTTTTC
* *
8340006 AAAAAATTCTCGTGTTTGACAAATT
1 AAAAATTTC-CGTGTTTGAAAAATT
8340031 TTCATGTTTT
Statistics
Matches: 116, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
103 7 0.06
105 35 0.30
106 48 0.41
107 26 0.22
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (105 bp):
AAAAATTTCCGTGTTTGAAAAATTCCCGTGTTTAAATGTTTTCAAAAAAATTCTCGTGTTTCAAA
AAACTCTCGTGAATATTTTTTTTGACGTTATCGTGTTTTC
Found at i:8339974 original size:105 final size:107
Alignment explanation
Indices: 8339833--8340072 Score: 375
Period size: 105 Copynumber: 2.3 Consensus size: 107
8339823 GTTTGAAAAA
8339833 TGTTTTC--AAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATA-TTTTTTTGACGTTATCGTG
1 TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTG
* *
8339895 TTTTCAAAAATTTC-CGTGTTTGAAAAATTTTCGTGTTTTCG
66 TTTTCAAAAAATTCTCGTGTTTGAAAAATTTTCATGTTTTCG
* *
8339936 TGTTTTCAAAAAAAATTCTTGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGATGTTATCGTG
1 TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTG
*
8340001 TTTTCAAAAAATTCTCGTGTTTGACAAATTTTCATGTTTTCG
66 TTTTCAAAAAATTCTCGTGTTTGAAAAATTTTCATGTTTTCG
* *
8340043 TG-TTT-AAAAAAAATTCTCGTATTTCGAAAA
1 TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAA
8340073 TTTTCTTGTT
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
103 7 0.06
105 57 0.46
106 34 0.27
107 27 0.22
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.45
Consensus pattern (107 bp):
TGTTTTCAAAAAAAATTCTCGTGTTTCAAAAAACTCTCGTGAATATTTTTTTTGACGTTATCGTG
TTTTCAAAAAATTCTCGTGTTTGAAAAATTTTCATGTTTTCG
Found at i:8340039 original size:36 final size:35
Alignment explanation
Indices: 8340037--8340272 Score: 282
Period size: 37 Copynumber: 6.6 Consensus size: 35
8340027 AATTTTCATG
* *
8340037 TTTTCGTG-TTTAAAAAAAATTCTCGTATTTCGAAAA
1 TTTTCGTGTTTTCAAAAAAATTC-CGTGTTTC-AAAA
* *
8340073 TTTTCTTGTTTTCAAAAAAATTCTGTGTTTCATAAA
1 TTTTCGTGTTTTCAAAAAAATTCCGTGTTTCA-AAA
* *
8340109 TTTCCGTGTTTTCAAAAAAA-TCCTGTCTTTCAAAA
1 TTTTCGTGTTTTCAAAAAAATTCC-GTGTTTCAAAA
8340144 TTTTCGTGTTTTCAAAAAAATTGACCGTGTTTCATAAA
1 TTTTCGTGTTTTCAAAAAAATT--CCGTGTTTCA-AAA
* *
8340182 TTTCCGTGTTTTC-AAAAAATTCCGTCTTTCAAAA
1 TTTTCGTGTTTTCAAAAAAATTCCGTGTTTCAAAA
8340216 TTTTCGTGTTTTCAAAAAAATTGACCGTGTTTCATAAA
1 TTTTCGTGTTTTCAAAAAAATT--CCGTGTTTCA-AAA
8340254 TTTTCGTG-TTTCAAAAAAA
1 TTTTCGTGTTTTCAAAAAAA
8340273 ATCCTCGTGT
Statistics
Matches: 175, Mismatches: 14, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
34 15 0.09
35 42 0.24
36 42 0.24
37 48 0.27
38 28 0.16
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (35 bp):
TTTTCGTGTTTTCAAAAAAATTCCGTGTTTCAAAA
Found at i:8340044 original size:44 final size:44
Alignment explanation
Indices: 8339985--8340085 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
8339975 TGAATATTTT
* * ** *
8339985 TTTTGATGTTATCGTGTTTTCAAAAAATTCTCGTGTTT-GACAAA
1 TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGA-AAA
8340029 TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGAAAA
1 TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGAAAA
*
8340073 TTTTCTTGTTTTC
1 TTTTCATGTTTTC
8340086 AAAAAAATTC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 48 0.96
45 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.50
Consensus pattern (44 bp):
TTTTCATGTTTTCGTGTTTAAAAAAAATTCTCGTATTTCGAAAA
Found at i:8340190 original size:17 final size:17
Alignment explanation
Indices: 8340050--8340270 Score: 122
Period size: 18 Copynumber: 12.3 Consensus size: 17
8340040 TCGTGTTTAA
* *
8340050 AAAAAATTCTCGTATTTC
1 AAAAATTTC-CGTGTTTC
* * *
8340068 GAAAATTTTCTTGTTTTC
1 AAAAATTTCCGTG-TTTC
* *
8340086 AAAAAAATTCTGTGTTTC
1 -AAAAATTTCCGTGTTTC
*
8340104 ATAAATTTCCGTGTTTTC
1 AAAAATTTCCGTG-TTTC
** *
8340122 AAAAAAATCCTGTCTTTC
1 AAAAATTTCC-GTGTTTC
*
8340140 -AAAATTTTCGTGTTTTC
1 AAAAATTTCCGTG-TTTC
*
8340157 AAAAAAATTGACCGTGTTTC
1 --AAAAATT-TCCGTGTTTC
*
8340177 ATAAATTTCCGTGTTTTC
1 AAAAATTTCCGTG-TTTC
* *
8340195 AAAAAATTCCGTCTTTC
1 AAAAATTTCCGTGTTTC
*
8340212 -AAAATTTTCGTGTTTTC
1 AAAAATTTCCGTG-TTTC
*
8340229 AAAAAAATTGACCGTGTTTC
1 --AAAAATT-TCCGTGTTTC
* *
8340249 ATAAATTTTCGTGTTTC
1 AAAAATTTCCGTGTTTC
8340266 AAAAA
1 AAAAA
8340271 AAATCCTCGT
Statistics
Matches: 151, Mismatches: 37, Indels: 31
0.69 0.17 0.14
Matches are distributed among these distances:
16 11 0.07
17 47 0.31
18 55 0.36
19 10 0.07
20 20 0.13
21 8 0.05
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (17 bp):
AAAAATTTCCGTGTTTC
Found at i:8340272 original size:72 final size:73
Alignment explanation
Indices: 8340041--8340272 Score: 350
Period size: 72 Copynumber: 3.2 Consensus size: 73
8340031 TTCATGTTTT
* * * *
8340041 CGTG-TTTAAAAAAAATTCTCGTATTTCGAAAATTTTCTTGTTTTCAAAAAAATT--CTGTGTTT
1 CGTGTTTTCAAAAAAATTC-CGTCTTTC-AAAATTTTCGTGTTTTCAAAAAAATTGACCGTGTTT
8340103 CATAAATTTC
64 CATAAATTTC
8340113 CGTGTTTTCAAAAAAA-TCCTGTCTTTCAAAATTTTCGTGTTTTCAAAAAAATTGACCGTGTTTC
1 CGTGTTTTCAAAAAAATTCC-GTCTTTCAAAATTTTCGTGTTTTCAAAAAAATTGACCGTGTTTC
8340177 ATAAATTTC
65 ATAAATTTC
8340186 CGTGTTTTC-AAAAAATTCCGTCTTTCAAAATTTTCGTGTTTTCAAAAAAATTGACCGTGTTTCA
1 CGTGTTTTCAAAAAAATTCCGTCTTTCAAAATTTTCGTGTTTTCAAAAAAATTGACCGTGTTTCA
*
8340250 TAAATTTT
66 TAAATTTC
8340258 CGTG-TTTCAAAAAAA
1 CGTGTTTTCAAAAAAA
8340273 ATCCTCGTGT
Statistics
Matches: 149, Mismatches: 5, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
71 30 0.20
72 80 0.54
73 39 0.26
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (73 bp):
CGTGTTTTCAAAAAAATTCCGTCTTTCAAAATTTTCGTGTTTTCAAAAAAATTGACCGTGTTTCA
TAAATTTC
Found at i:8340427 original size:17 final size:20
Alignment explanation
Indices: 8340407--8340447 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
8340397 TCAAAAATGC
8340407 TTGT-ATTT-AAAAAAAAA-
1 TTGTGATTTCAAAAAAAAAG
*
8340424 TTGTGTTTTCAAAAAAAAAG
1 TTGTGATTTCAAAAAAAAAG
8340444 TTGT
1 TTGT
8340448 TGTGCTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 4 0.20
18 3 0.15
19 9 0.45
20 4 0.20
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.39
Consensus pattern (20 bp):
TTGTGATTTCAAAAAAAAAG
Found at i:8343265 original size:11 final size:11
Alignment explanation
Indices: 8343251--8343299 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
8343241 ATGAATAAAG
8343251 TGAAATGAATA
1 TGAAATGAATA
*
8343262 TGAAATGAAAA
1 TGAAATGAATA
8343273 T--AA--AATA
1 TGAAATGAATA
*
8343280 TGAAATGAATT
1 TGAAATGAATA
8343291 TGAAATGAA
1 TGAAATGAA
8343300 ACTAAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
7 4 0.13
9 4 0.13
11 23 0.74
ACGTcount: A:0.57, C:0.00, G:0.16, T:0.27
Consensus pattern (11 bp):
TGAAATGAATA
Found at i:8343285 original size:29 final size:29
Alignment explanation
Indices: 8343251--8343353 Score: 138
Period size: 29 Copynumber: 3.6 Consensus size: 29
8343241 ATGAATAAAG
8343251 TGAAATGAATATGAAATGAAAATAAAATA
1 TGAAATGAATATGAAATGAAAATAAAATA
* *
8343280 TGAAATGAATTTGAAATGAAACTAAAATA
1 TGAAATGAATATGAAATGAAAATAAAATA
* * *
8343309 TTAAATGAATGTGAAATGAAAATAAAGTA
1 TGAAATGAATATGAAATGAAAATAAAATA
8343338 T-AAATTGAA-ATGAAAT
1 TGAAA-TGAATATGAAAT
8343354 CAATTACCAT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
28 9 0.14
29 57 0.86
ACGTcount: A:0.57, C:0.01, G:0.15, T:0.27
Consensus pattern (29 bp):
TGAAATGAATATGAAATGAAAATAAAATA
Found at i:8343462 original size:23 final size:23
Alignment explanation
Indices: 8343444--8343521 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 23
8343434 ACAAATTTAG
8343444 ATGAAATGAAATGAGAAATGGAA
1 ATGAAATGAAATGAGAAATGGAA
* * *
8343467 ATGAAATGAATTTAGAAATGAAA
1 ATGAAATGAAATGAGAAATGGAA
* * *
8343490 ATTAAA--AATTGA-AAATTGAA
1 ATGAAATGAAATGAGAAATGGAA
8343510 ATTGAAATGAAA
1 A-TGAAATGAAA
8343522 AAAGAAAAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
20 7 0.16
21 9 0.21
23 27 0.63
ACGTcount: A:0.58, C:0.00, G:0.18, T:0.24
Consensus pattern (23 bp):
ATGAAATGAAATGAGAAATGGAA
Found at i:8343511 original size:13 final size:14
Alignment explanation
Indices: 8343478--8343516 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
8343468 TGAAATGAAT
8343478 TTAGAAA-TGAAAA
1 TTAGAAATTGAAAA
*
8343491 TTAAAAATTGAAAA
1 TTAGAAATTGAAAA
8343505 TT-GAAATTGAAA
1 TTAGAAATTGAAA
8343517 TGAAAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (14 bp):
TTAGAAATTGAAAA
Found at i:8343764 original size:21 final size:21
Alignment explanation
Indices: 8343740--8343779 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8343730 TTTAAATTGA
*
8343740 GAAAAAGTTTAAATAAAATAT
1 GAAAAAATTTAAATAAAATAT
8343761 GAAAAAATTTAAATAAAAT
1 GAAAAAATTTAAATAAAAT
8343780 GTAATTGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (21 bp):
GAAAAAATTTAAATAAAATAT
Found at i:8343831 original size:21 final size:21
Alignment explanation
Indices: 8343805--8343865 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
8343795 TCTAATTAAT
8343805 ATGAAAAAAATATGAAATGAA
1 ATGAAAAAAATATGAAATGAA
*
8343826 ATGAAAAAAA-ATTGAATTGAA
1 ATGAAAAAAATA-TGAAATGAA
*
8343847 A-AAAAATAAAT-TGAAATGA
1 ATGAAAA-AAATATGAAATGA
8343866 GACTACTTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 12 0.35
21 22 0.65
ACGTcount: A:0.66, C:0.00, G:0.13, T:0.21
Consensus pattern (21 bp):
ATGAAAAAAATATGAAATGAA
Found at i:8343834 original size:20 final size:20
Alignment explanation
Indices: 8343808--8343865 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
8343798 AATTAATATG
8343808 AAAAAAATATGAAATGAAATGA
1 AAAAAAATATGAAATGAAA--A
*
8343830 AAAAAAAT-TGAATTGAAAA
1 AAAAAAATATGAAATGAAAA
8343849 AAAATAAAT-TGAAATGA
1 AAAA-AAATATGAAATGA
8343866 GACTACTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.15
20 11 0.33
21 9 0.27
22 8 0.24
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (20 bp):
AAAAAAATATGAAATGAAAA
Found at i:8343841 original size:16 final size:16
Alignment explanation
Indices: 8343822--8343853 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8343812 AAATATGAAA
8343822 TGAAATGAAAAAAAAT
1 TGAAATGAAAAAAAAT
*
8343838 TGAATTGAAAAAAAAT
1 TGAAATGAAAAAAAAT
8343854 AAATTGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (16 bp):
TGAAATGAAAAAAAAT
Found at i:8343848 original size:15 final size:15
Alignment explanation
Indices: 8343827--8343862 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
8343817 TGAAATGAAA
*
8343827 TGAAAAAAAATTGAAT
1 TGAAAAAAAA-TAAAT
8343843 TGAAAAAAAATAAAT
1 TGAAAAAAAATAAAT
8343858 TGAAA
1 TGAAA
8343863 TGAGACTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (15 bp):
TGAAAAAAAATAAAT
Found at i:8343947 original size:5 final size:5
Alignment explanation
Indices: 8343937--8344066 Score: 80
Period size: 5 Copynumber: 23.4 Consensus size: 5
8343927 AAAAAAAACT
* * *
8343937 AATGA AATGA AATGTTA AATGA ATATGA AATGT AATGTA ATTTGT AATGA
1 AATGA AATGA AATG--A AATGA A-ATGA AATGA AATG-A A-ATGA AATGA
*
8343987 ATATTCA AATGA AATGA AATGTTA AATGA ATATGA AATGA AATGA AATGA
1 A-A-TGA AATGA AATGA AATG--A AATGA A-ATGA AATGA AATGA AATGA
* * *
8344037 ATTTTGT AATGA TTATGA AATGA AATGA AA
1 A--ATGA AATGA -AATGA AATGA AATGA AA
8344067 GTTTAAATGA
Statistics
Matches: 98, Mismatches: 14, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
5 62 0.63
6 18 0.18
7 18 0.18
ACGTcount: A:0.50, C:0.01, G:0.17, T:0.32
Consensus pattern (5 bp):
AATGA
Found at i:8343973 original size:28 final size:28
Alignment explanation
Indices: 8343937--8344077 Score: 142
Period size: 28 Copynumber: 4.8 Consensus size: 28
8343927 AAAAAAAACT
8343937 AATGAAATGAAATGTTAAATGAATATGA
1 AATGAAATGAAATGTTAAATGAATATGA
* * * *
8343965 AATGTAATGTAAT-TTGTAATGAATATTCA
1 AATGAAATGAAATGTT-AAATGAATA-TGA
8343994 AATGAAATGAAATGTTAAATGAATATGA
1 AATGAAATGAAATGTTAAATGAATATGA
* *
8344022 AATGAAATGAAATGAATTTTGTAATGATTATGA
1 AATGAAATGAAATG----TT-AAATGAATATGA
8344055 AATGAAATGAAA-GTTTAAATGAA
1 AATGAAATGAAATG-TTAAATGAA
8344078 AATAAATTAT
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
27 2 0.02
28 40 0.43
29 24 0.26
30 2 0.02
32 3 0.03
33 22 0.24
ACGTcount: A:0.50, C:0.01, G:0.17, T:0.33
Consensus pattern (28 bp):
AATGAAATGAAATGTTAAATGAATATGA
Found at i:8344005 original size:57 final size:59
Alignment explanation
Indices: 8343937--8344077 Score: 191
Period size: 57 Copynumber: 2.4 Consensus size: 59
8343927 AAAAAAAACT
*
8343937 AATGAAATGAAATGTTAAATGAATATGAAATGTAATG-T-AA-TTTGTAATGAATATTCA
1 AATGAAATGAAATGTTAAATGAATATGAAATGAAATGATGAATTTTGTAATGAATA-TCA
* *
8343994 AATGAAATGAAATGTTAAATGAATATGAAATGAAATGAAATGAATTTTGTAATGATTATGA
1 AATGAAATGAAATGTTAAATGAATATGAAATGAAATG--ATGAATTTTGTAATGAATATCA
8344055 AATGAAATGAAA-GTTTAAATGAA
1 AATGAAATGAAATG-TTAAATGAA
8344078 AATAAATTAT
Statistics
Matches: 75, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
57 36 0.48
60 2 0.03
61 25 0.33
62 12 0.16
ACGTcount: A:0.50, C:0.01, G:0.17, T:0.33
Consensus pattern (59 bp):
AATGAAATGAAATGTTAAATGAATATGAAATGAAATGATGAATTTTGTAATGAATATCA
Found at i:8344013 original size:12 final size:10
Alignment explanation
Indices: 8343937--8344066 Score: 80
Period size: 12 Copynumber: 11.7 Consensus size: 10
8343927 AAAAAAAACT
8343937 AATGAAATGA
1 AATGAAATGA
8343947 AATGTTAAATGA
1 AATG--AAATGA
*
8343959 ATATGAAATGT
1 A-ATGAAATGA
* *
8343970 AATGTAATTTGT
1 AATG-AA-ATGA
*
8343982 AATGAATATTCA
1 AATGAA-A-TGA
8343994 AATGAAATGA
1 AATGAAATGA
8344004 AATGTTAAATGA
1 AATG--AAATGA
8344016 ATATGAAATGA
1 A-ATGAAATGA
8344027 AATGAAATGA
1 AATGAAATGA
* *
8344037 ATTTTGTAATGA
1 A--ATGAAATGA
*
8344049 TTATGAAATGA
1 -AATGAAATGA
8344060 AATGAAA
1 AATGAAA
8344067 GTTTAAATGA
Statistics
Matches: 96, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
10 29 0.30
11 26 0.27
12 35 0.36
13 6 0.06
ACGTcount: A:0.50, C:0.01, G:0.17, T:0.32
Consensus pattern (10 bp):
AATGAAATGA
Found at i:8344021 original size:23 final size:21
Alignment explanation
Indices: 8343938--8344066 Score: 75
Period size: 23 Copynumber: 5.8 Consensus size: 21
8343928 AAAAAAACTA
8343938 ATGAAATGAAATGTTAAATGAAT
1 ATGAAATGAAATG--AAATGAAT
* * *
8343961 ATGAAATGTAATGTAATTTGTA-
1 ATGAAATGAAATG-AA-ATGAAT
*
8343983 ATGAATATTCAAATGAAATGAA-
1 ATGAA-A-TGAAATGAAATGAAT
8344005 ATGTTAAATGAATATGAAATGAA-
1 ATG--AAATGAA-ATGAAATGAAT
* * *
8344028 ATGAAATGAATTTTGTAATGATT
1 ATGAAATGAA--ATGAAATGAAT
8344051 ATGAAATGAAATGAAA
1 ATGAAATGAAATGAAA
8344067 GTTTAAATGA
Statistics
Matches: 85, Mismatches: 13, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
21 11 0.13
22 25 0.29
23 42 0.49
24 7 0.08
ACGTcount: A:0.50, C:0.01, G:0.17, T:0.33
Consensus pattern (21 bp):
ATGAAATGAAATGAAATGAAT
Found at i:8344035 original size:33 final size:33
Alignment explanation
Indices: 8343993--8344066 Score: 105
Period size: 33 Copynumber: 2.2 Consensus size: 33
8343983 ATGAATATTC
8343993 AAATGAAATGAAATGTT-AAATGAATATGAAATG
1 AAATGAAATG-AATGTTGAAATGAATATGAAATG
* * *
8344026 AAATGAAATGAATTTTGTAATGATTATGAAATG
1 AAATGAAATGAATGTTGAAATGAATATGAAATG
8344059 AAATGAAA
1 AAATGAAA
8344067 GTTTAAATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 5 0.14
33 32 0.86
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.30
Consensus pattern (33 bp):
AAATGAAATGAATGTTGAAATGAATATGAAATG
Found at i:8344076 original size:17 final size:17
Alignment explanation
Indices: 8344048--8344101 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
8344038 TTTTGTAATG
8344048 ATTATGAAATGAAATGAA
1 ATTAT-AAATGAAATGAA
8344066 AGTT-TAAATGAAAAT-AA
1 A-TTATAAATG-AAATGAA
8344083 ATTATAAATTGAAATGAA
1 ATTATAAA-TGAAATGAA
8344101 A
1 A
8344102 ACAAAAACTG
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.06
17 16 0.52
18 11 0.35
19 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30
Consensus pattern (17 bp):
ATTATAAATGAAATGAA
Found at i:8344195 original size:21 final size:21
Alignment explanation
Indices: 8344163--8344216 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
8344153 TGAAAAAAAT
*
8344163 TGAAATGAGAAAAAAAATTAAA
1 TGAAATGA-AAAAAAATTTAAA
*
8344185 TTTAAATGAAAAAAAATTTAAA
1 -TGAAATGAAAAAAAATTTAAA
8344207 TGAAATGAAA
1 TGAAATGAAA
8344217 TGGAAGGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 9 0.32
22 12 0.43
23 7 0.25
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (21 bp):
TGAAATGAAAAAAAATTTAAA
Found at i:8344217 original size:16 final size:16
Alignment explanation
Indices: 8344177--8344217 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
8344167 ATGAGAAAAA
*
8344177 AAATTAAATTTAAATG
1 AAATAAAATTTAAATG
*
8344193 AAAAAAAATTTAAATG
1 AAATAAAATTTAAATG
*
8344209 AAATGAAAT
1 AAATAAAAT
8344218 GGAAGGAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (16 bp):
AAATAAAATTTAAATG
Found at i:8344239 original size:22 final size:21
Alignment explanation
Indices: 8344204--8344254 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
8344194 AAAAAAATTT
* *
8344204 AAATG-AAATGAAATGGAAGG
1 AAATGAAAAGGAAATGAAAGG
*
8344224 AAATGGAAAAGGAAATGAAATG
1 AAAT-GAAAAGGAAATGAAAGG
8344246 AAATGAAAA
1 AAATGAAAA
8344255 TAATAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 4 0.15
21 6 0.23
22 16 0.62
ACGTcount: A:0.61, C:0.00, G:0.25, T:0.14
Consensus pattern (21 bp):
AAATGAAAAGGAAATGAAAGG
Found at i:8344255 original size:6 final size:5
Alignment explanation
Indices: 8344204--8344253 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
8344194 AAAAAAATTT
* * *
8344204 AAATG AAATG AAATG GAAGG AAATGG AAAAGG AAATG AAATG AAATG AAA
1 AAATG AAATG AAATG AAATG AAAT-G -AAATG AAATG AAATG AAATG AAA
8344254 ATAATAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
5 32 0.86
6 2 0.05
7 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.14
Consensus pattern (5 bp):
AAATG
Found at i:8346785 original size:22 final size:20
Alignment explanation
Indices: 8346736--8346785 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
8346726 CTTTATTTTG
*
8346736 TAATTATTCTATTTTTTAATA
1 TAATTATT-TATTTTTTAAAA
8346757 TAA--ATTTAATTTTTCTAAAA
1 TAATTATTT-ATTTTT-TAAAA
8346777 TAATTATTT
1 TAATTATTT
8346786 GTTTGAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
18 1 0.04
19 9 0.38
20 7 0.29
21 3 0.12
22 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATTATTTATTTTTTAAAA
Found at i:8354939 original size:88 final size:88
Alignment explanation
Indices: 8354790--8355068 Score: 461
Period size: 88 Copynumber: 3.1 Consensus size: 88
8354780 AGTACGGACT
* * ** *
8354790 AAATTAAATTTAAACACCCAACAAAACTATAGACAGATGGGTAAAATTAACGCACAAAAATTTTA
1 AAATTAAATTTAAACACCCAAC-AAACTACAAACAGATGGGTAAAATTAATACACGAAAATTTTA
8354855 AATTCAAACTATATAATACATACA
65 AATTCAAACTATATAATACATACA
8354879 AAATTAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATACACGAAAATTTTAA
1 AAATTAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATACACGAAAATTTTAA
8354944 ATTCAAACTATATAATACATACA
66 ATTCAAACTATATAATACATACA
8354967 AAATTAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATACACGAAAATTTTAA
1 AAATTAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATACACGAAAATTTTAA
*
8355032 ATTCAAACTACATATAATACGA-ACT
66 ATTCAAACT--ATATAATAC-ATACA
8355057 AAATTAAATTTA
1 AAATTAAATTTA
8355069 CAGATACAAA
Statistics
Matches: 181, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
88 135 0.75
89 22 0.12
90 23 0.13
91 1 0.01
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.25
Consensus pattern (88 bp):
AAATTAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATACACGAAAATTTTAA
ATTCAAACTATATAATACATACA
Found at i:8355135 original size:7 final size:7
Alignment explanation
Indices: 8355125--8355149 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8355115 TATAAAAATG
8355125 AAACCTT
1 AAACCTT
8355132 AAACCTT
1 AAACCTT
8355139 AAACCTT
1 AAACCTT
8355146 AAAC
1 AAAC
8355150 GACTACATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (7 bp):
AAACCTT
Found at i:8355574 original size:60 final size:60
Alignment explanation
Indices: 8355508--8355623 Score: 205
Period size: 60 Copynumber: 1.9 Consensus size: 60
8355498 AATCCATTAC
* *
8355508 AAAAAACTCATTTGATGATACACTACAAAACACTCTCATTTTGATGGCTCTCTCAATTTT
1 AAAAAACTCATTTGATGATACACTACAAAACACTCTCATCTTGAAGGCTCTCTCAATTTT
*
8355568 AAAAAACTCATTTGATGATACACTACAAAATACTCTCATCTTGAAGGCTCTCTCAA
1 AAAAAACTCATTTGATGATACACTACAAAACACTCTCATCTTGAAGGCTCTCTCAA
8355624 AAAAAAAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (60 bp):
AAAAAACTCATTTGATGATACACTACAAAACACTCTCATCTTGAAGGCTCTCTCAATTTT
Found at i:8356695 original size:29 final size:29
Alignment explanation
Indices: 8356660--8356717 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
8356650 TATTAAATTG
8356660 ACATTTACCAAGTATGTAATTATTTTTAC
1 ACATTTACCAAGTATGTAATTATTTTTAC
*
8356689 ACATTTACCAAGTATGTAATTTTTTTTAC
1 ACATTTACCAAGTATGTAATTATTTTTAC
8356718 TAACATCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.47
Consensus pattern (29 bp):
ACATTTACCAAGTATGTAATTATTTTTAC
Found at i:8356822 original size:6 final size:6
Alignment explanation
Indices: 8356811--8356844 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
8356801 CAAAGTAACC
8356811 TATTAA TATTAA TATTAA TATTAA TATTAA TATT
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATT
8356845 TCATATCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TATTAA
Found at i:8357144 original size:14 final size:14
Alignment explanation
Indices: 8357107--8357144 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
8357097 TAATTAGTCA
8357107 TTCATAAATTTTTT
1 TTCATAAATTTTTT
*
8357121 TAC-TACAATTTTTT
1 TTCATA-AATTTTTT
8357135 TTCATAAATT
1 TTCATAAATT
8357145 ACCAAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
13 2 0.10
14 16 0.80
15 2 0.10
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.58
Consensus pattern (14 bp):
TTCATAAATTTTTT
Found at i:8358866 original size:22 final size:22
Alignment explanation
Indices: 8358836--8358887 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
8358826 TGTGTCATGT
*
8358836 TTAGTACTTTGGTACTCTCTGC
1 TTAGCACTTTGGTACTCTCTGC
* * *
8358858 TTAGCACTTTTGTGCTCTCTGT
1 TTAGCACTTTGGTACTCTCTGC
8358880 TTAGCACT
1 TTAGCACT
8358888 ACGGTGCTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.13, C:0.23, G:0.17, T:0.46
Consensus pattern (22 bp):
TTAGCACTTTGGTACTCTCTGC
Found at i:8358894 original size:22 final size:22
Alignment explanation
Indices: 8358850--8358900 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
8358840 TACTTTGGTA
***
8358850 CTCTCTGCTTAGCACTTTTGTG
1 CTCTCTGCTTAGCACTACGGTG
*
8358872 CTCTCTGTTTAGCACTACGGTG
1 CTCTCTGCTTAGCACTACGGTG
*
8358894 CTATCTG
1 CTCTCTG
8358901 GTGTGGTGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.41
Consensus pattern (22 bp):
CTCTCTGCTTAGCACTACGGTG
Found at i:8360129 original size:25 final size:23
Alignment explanation
Indices: 8360085--8360145 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
8360075 TAATATTTAA
*
8360085 ATATAATTTATATTATATGA-ATTT
1 ATATAA-TTAAATTATATGATA-TT
8360109 ATGATAATTAAATTATAATGATATT
1 AT-ATAATTAAATTAT-ATGATATT
*
8360134 ATATTATTAAAT
1 ATATAATTAAAT
8360146 AAATCAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 19 0.59
25 12 0.38
26 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
ATATAATTAAATTATATGATATT
Found at i:8360133 original size:35 final size:34
Alignment explanation
Indices: 8360062--8360143 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
8360052 ATTTGTTTTA
* *
8360062 ATTATATAATTAATAATATTTAAATATAATTTAT
1 ATTATATAATTAATAATAATTAAATATAATTGAT
* *
8360096 ATTATATGAATTTATGATAATTAAATTATAA-TGAT
1 ATTATAT-AATTAATAATAATTAAA-TATAATTGAT
*
8360131 ATTATATTATTAA
1 ATTATATAATTAA
8360144 ATAAATCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 11 0.28
35 24 0.60
36 5 0.12
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.49
Consensus pattern (34 bp):
ATTATATAATTAATAATAATTAAATATAATTGAT
Found at i:8361284 original size:40 final size:38
Alignment explanation
Indices: 8361202--8361298 Score: 113
Period size: 40 Copynumber: 2.5 Consensus size: 38
8361192 TTGAGATTGA
* * *
8361202 TACTGAATTGAATTATGGAATATTGAATATTGTTTTGAG
1 TACTGAATTGAATTGT-GAATACTGAATATTGTTATGAG
*
8361241 TACTGAATTGAATTGTGAAGTTACTGAATATTGTTATGTG
1 TACTGAATTGAATTGTGAA--TACTGAATATTGTTATGAG
* *
8361281 TACTGCATTGAACTGTGA
1 TACTGAATTGAATTGTGA
8361299 GATTATTGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
38 3 0.06
39 15 0.30
40 32 0.64
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41
Consensus pattern (38 bp):
TACTGAATTGAATTGTGAATACTGAATATTGTTATGAG
Found at i:8362798 original size:27 final size:27
Alignment explanation
Indices: 8362768--8362837 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
8362758 CATGTTTCAC
8362768 GTCCTGGTGGACTACCCCATTTTTAAT
1 GTCCTGGTGGACTACCCCATTTTTAAT
* *
8362795 GTCCTGATGGACTACCCCGTTTTTAAT
1 GTCCTGGTGGACTACCCCATTTTTAAT
**
8362822 GTCCCAGTGGACTACC
1 GTCCTGGTGGACTACC
8362838 TTGTGTTTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.33
Consensus pattern (27 bp):
GTCCTGGTGGACTACCCCATTTTTAAT
Found at i:8362846 original size:27 final size:28
Alignment explanation
Indices: 8362775--8362853 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 28
8362765 CACGTCCTGG
* * *
8362775 TGGACTACCCCATTTTTAATGT-CCTGA
1 TGGACTACCCCGTGTTTAATGTCCCAGA
*
8362802 TGGACTACCCCGTTTTTAATGTCCCAG-
1 TGGACTACCCCGTGTTTAATGTCCCAGA
** *
8362829 TGGACTACCTTGTGTTTAGTGTCCC
1 TGGACTACCCCGTGTTTAATGTCCC
8362854 GACAGACTCC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 42 0.93
28 3 0.07
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.37
Consensus pattern (28 bp):
TGGACTACCCCGTGTTTAATGTCCCAGA
Found at i:8372046 original size:7 final size:7
Alignment explanation
Indices: 8372034--8372070 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
8372024 GGATGAAAAT
8372034 TGTTAAA
1 TGTTAAA
8372041 TGTTAAA
1 TGTTAAA
8372048 TGTTAAA
1 TGTTAAA
*
8372055 TGTTAAT
1 TGTTAAA
8372062 TGTTAAA
1 TGTTAAA
8372069 TG
1 TG
8372071 GATACACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (7 bp):
TGTTAAA
Found at i:8376294 original size:42 final size:42
Alignment explanation
Indices: 8376246--8376472 Score: 232
Period size: 43 Copynumber: 5.4 Consensus size: 42
8376236 TTCTCCGAGA
** *
8376246 GGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
* *
8376288 GGTTGCTAAGTGTTGATTCAACCGTA-TATTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTC-CCCGTATTA-TTGATTGT-AAAGGT
* * * * *
8376331 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
8376373 GGTTGCTAAGTGCTGATTCCACCGTATCT-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGATTGT-AAAGGT
* * *
8376416 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATT-T-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTG-ATTGTAAAGGT
8376457 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
8376473 ATCCACCGAG
Statistics
Matches: 153, Mismatches: 21, Indels: 23
0.78 0.11 0.12
Matches are distributed among these distances:
40 4 0.03
41 20 0.13
42 58 0.38
43 61 0.40
44 10 0.07
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
Found at i:8376390 original size:85 final size:84
Alignment explanation
Indices: 8376246--8376472 Score: 346
Period size: 85 Copynumber: 2.7 Consensus size: 84
8376236 TTCTCCGAGA
* ** * * * *
8376246 GGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGTGGTTGCTAAGTGTTGATTCAACC
1 GGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCAACC
8376311 GTATATTTGATTGTGAAAGG
65 GTATATTTGATTGTGAAAGG
*
8376331 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACC
1 GGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCAACC
*
8376396 GTATCTTTGATTGTGAAAGG
65 GTATATTTGATTGTGAAAGG
*
8376416 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATTTAAGGTGGTTGCTAAGTGCTGA
1 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGA
8376473 ATCCACCGAG
Statistics
Matches: 131, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
84 22 0.17
85 109 0.83
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (84 bp):
GGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCAACCG
TATATTTGATTGTGAAAGG
Found at i:8399226 original size:51 final size:51
Alignment explanation
Indices: 8399167--8399306 Score: 167
Period size: 50 Copynumber: 2.8 Consensus size: 51
8399157 CCGGTTCACA
* *
8399167 TAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
** * * * *
8399218 TAGTAGCCTGCACATAGTACTACACATGCAACC-T-ATCTTTCTGGTACGCG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CTATCCGATACACG
* *
8399268 TAGTAGCCTGTACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
8399307 TTCACTTTAA
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
49 1 0.01
50 39 0.53
51 33 0.45
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
Found at i:8401317 original size:22 final size:23
Alignment explanation
Indices: 8401287--8401329 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8401277 AGCCGCTTCC
* *
8401287 ATGTTTCAACCTTGAG-ATTTAA
1 ATGTCTCAACATTGAGTATTTAA
8401309 ATGTCTCAACATTGAGTATTT
1 ATGTCTCAACATTGAGTATTT
8401330 GACTCTCAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (23 bp):
ATGTCTCAACATTGAGTATTTAA
Found at i:8405744 original size:26 final size:26
Alignment explanation
Indices: 8405715--8405803 Score: 70
Period size: 26 Copynumber: 3.3 Consensus size: 26
8405705 TAAAATTCTA
8405715 ATTATTTAATATATTTAACTATATCC
1 ATTATTTAATATATTTAACTATATCC
* ** * * *
8405741 ATTATTTATTGATAAATAATTGAATTTTC
1 ATTATTTAAT-ATATTTAACT--ATATCC
**
8405770 ATTAAGTAATATATTTAACTATATCC
1 ATTATTTAATATATTTAACTATATCC
*
8405796 ATAATTTA
1 ATTATTTA
8405804 TTGACAAAAT
Statistics
Matches: 43, Mismatches: 17, Indels: 6
0.65 0.26 0.09
Matches are distributed among these distances:
26 18 0.42
27 7 0.16
28 7 0.16
29 11 0.26
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.48
Consensus pattern (26 bp):
ATTATTTAATATATTTAACTATATCC
Found at i:8408607 original size:73 final size:72
Alignment explanation
Indices: 8408511--8408708 Score: 244
Period size: 73 Copynumber: 2.8 Consensus size: 72
8408501 TGTAGTTCCC
*
8408511 CCAAACCTTAAAA-CTTTTTTCCTTTTACTTTCCCCCTTAAACTTTTACTTCCCTTAAAATATTT
1 CCAAACCCTAAAACCTTTTTTCCTTTTACTTTCCCCCTTAAACTTTTACTTCCCTTAAAA-ATTT
*
8408575 TACATTC-
65 TACAATCT
* *
8408582 CCTAAACCCTAAAACCTTTTTTCCTTTTACTTTCCCCCTAAAACTTTTACTTTCCTTTAAAAATT
1 CC-AAACCCTAAAACCTTTTTTCCTTTTACTTTCCCCCTTAAACTTTTAC-TTCCCTTAAAAATT
*
8408647 TTATAATCT
64 TTACAATCT
* * *
8408656 CCAAACCCCAAAACC-TTTTTGCTTTTAC-TT-CCCCTTCAAAAATTTTACTTCCC
1 CCAAACCCTAAAACCTTTTTTCCTTTTACTTTCCCCCTT--AAACTTTTACTTCCC
8408709 CCAAACCCCA
Statistics
Matches: 111, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
70 5 0.05
71 8 0.07
72 31 0.28
73 55 0.50
74 12 0.11
ACGTcount: A:0.27, C:0.30, G:0.01, T:0.42
Consensus pattern (72 bp):
CCAAACCCTAAAACCTTTTTTCCTTTTACTTTCCCCCTTAAACTTTTACTTCCCTTAAAAATTTT
ACAATCT
Found at i:8408648 original size:19 final size:20
Alignment explanation
Indices: 8408606--8408649 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
8408596 CCTTTTTTCC
*
8408606 TTTTACTTTCCCCCTAAAAC
1 TTTTACTTTCCCCCTAAAAA
**
8408626 TTTTACTTT-CCTTTAAAAA
1 TTTTACTTTCCCCCTAAAAA
8408645 TTTTA
1 TTTTA
8408650 TAATCTCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTACTTTCCCCCTAAAAA
Found at i:8408757 original size:52 final size:54
Alignment explanation
Indices: 8408656--8408783 Score: 143
Period size: 53 Copynumber: 2.4 Consensus size: 54
8408646 TTTATAATCT
* * *
8408656 CCAAACCCCAAAACCTTTTTGCTTTTACTTCCCCTTCAAAAATTTTACTTC-CC
1 CCAAACCCCAAAACTTTTTTGCTTTTACTTCCCCTCCAAAAATTGTACTTCACC
* * * *
8408709 CCAAACCCCAAAACTTTTTTTCTTTTGCTT-TCCTCCAAAACTTGTACTTCATCC
1 CCAAACCCCAAAACTTTTTTGCTTTTACTTCCCCTCCAAAAATTGTACTTCA-CC
**
8408763 TAAAACCCCCAAAACTTTTTT
1 CCAAA-CCCCAAAACTTTTTT
8408784 CCCAAATTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
52 16 0.25
53 27 0.43
54 5 0.08
55 15 0.24
ACGTcount: A:0.27, C:0.34, G:0.02, T:0.37
Consensus pattern (54 bp):
CCAAACCCCAAAACTTTTTTGCTTTTACTTCCCCTCCAAAAATTGTACTTCACC
Found at i:8418570 original size:5 final size:5
Alignment explanation
Indices: 8418555--8418597 Score: 77
Period size: 5 Copynumber: 8.4 Consensus size: 5
8418545 CTATGACTAG
8418555 TTATAT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTAT-T TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
8418598 TATGAGTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:8419797 original size:22 final size:22
Alignment explanation
Indices: 8419737--8419794 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
8419727 AATCTTCAAG
8419737 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
8419756 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
8419778 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
8419795 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:8420701 original size:5 final size:5
Alignment explanation
Indices: 8420693--8420718 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8420683 TGCCTTATAT
8420693 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
8420719 ACTCTTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:8424798 original size:31 final size:31
Alignment explanation
Indices: 8424731--8424799 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
8424721 GTTAGAATTG
*
8424731 GTCACTGAACTATTTGAAAGTTTTCATCTAA
1 GTCACTGAACTATTTAAAAGTTTTCATCTAA
* ** *
8424762 ATCACTGAAAC-ATTTAAAAGTTTTTGTTTAA
1 GTCACTG-AACTATTTAAAAGTTTTCATCTAA
8424793 GTCACTG
1 GTCACTG
8424800 GGTTGTTAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (31 bp):
GTCACTGAACTATTTAAAAGTTTTCATCTAA
Found at i:8426657 original size:36 final size:36
Alignment explanation
Indices: 8426610--8426734 Score: 118
Period size: 36 Copynumber: 3.6 Consensus size: 36
8426600 TATCAGATCT
* * *
8426610 TCCCAAACTCCTGGACGAGATATCAGGTCTTCTCAA
1 TCCCAAGCTCCTGAACAAGATATCAGGTCTTCTCAA
** *
8426646 TCCCAAGCTCCTGAACTCGATATCAAG---TCT---
1 TCCCAAGCTCCTGAACAAGATATCAGGTCTTCTCAA
* *
8426676 TCCCAAGCTTCTGAACAAAATATCAGGTCTTCTCAA
1 TCCCAAGCTCCTGAACAAGATATCAGGTCTTCTCAA
* *
8426712 TCCCAAGATCTTGAACAAGATAT
1 TCCCAAGCTCCTGAACAAGATAT
8426735 TGAGTCTTCC
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
30 22 0.32
33 6 0.09
36 41 0.59
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (36 bp):
TCCCAAGCTCCTGAACAAGATATCAGGTCTTCTCAA
Found at i:8426699 original size:30 final size:30
Alignment explanation
Indices: 8426646--8426707 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
8426636 GTCTTCTCAA
***
8426646 TCCCAAGCTCCTGAACTCGATATCAAGTCT
1 TCCCAAGCTCCTGAACAAAATATCAAGTCT
* *
8426676 TCCCAAGCTTCTGAACAAAATATCAGGTCT
1 TCCCAAGCTCCTGAACAAAATATCAAGTCT
8426706 TC
1 TC
8426708 TCAATCCCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (30 bp):
TCCCAAGCTCCTGAACAAAATATCAAGTCT
Found at i:8426699 original size:66 final size:66
Alignment explanation
Indices: 8426629--8426774 Score: 193
Period size: 66 Copynumber: 2.2 Consensus size: 66
8426619 CCTGGACGAG
* ** * * *
8426629 ATATCAGGTCTTCTCAATCCCAAGCTCCTGAACTCGATATCAAGTCTTCCCAAGCTTCTGAACAA
1 ATATCAGGTCTTCTCAATCCCAAGATCCTGAACAAGATATCAAGTCTTCCAAAGCTCCTAAACAA
8426694 A
66 A
* **
8426695 ATATCAGGTCTTCTCAATCCCAAGATCTTGAACAAGATATTGAGTCTTCCAAAGCTCCTAAACAA
1 ATATCAGGTCTTCTCAATCCCAAGATCCTGAACAAGATATCAAGTCTTCCAAAGCTCCTAAACAA
*
8426760 G
66 A
*
8426761 ATATCGGGTCTTCT
1 ATATCAGGTCTTCT
8426775 TAAGTTCTTG
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (66 bp):
ATATCAGGTCTTCTCAATCCCAAGATCCTGAACAAGATATCAAGTCTTCCAAAGCTCCTAAACAA
A
Found at i:8430777 original size:3 final size:3
Alignment explanation
Indices: 8430769--8430820 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
8430759 AAACATTTAA
8430769 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8430817 AAT A
1 AAT A
8430821 GAGTCCATGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8432094 original size:474 final size:474
Alignment explanation
Indices: 8431207--8432156 Score: 1900
Period size: 474 Copynumber: 2.0 Consensus size: 474
8431197 TCAATTAAAA
8431207 ATTTATGAGAAAAAAGAGCTGAAATATTATGGGTATTTGCAGTTCAAGTTCCATAAAAATTGAAT
1 ATTTATGAGAAAAAAGAGCTGAAATATTATGGGTATTTGCAGTTCAAGTTCCATAAAAATTGAAT
8431272 TTTTTATAAGGAGACCTTGTCACTCCTCTGTACATTGAAGCTCCCCTTGAAAATCCACTGCTTTT
66 TTTTTATAAGGAGACCTTGTCACTCCTCTGTACATTGAAGCTCCCCTTGAAAATCCACTGCTTTT
8431337 CCTGCTCATACAGTAGAATTATGAACATCGACAAAAACCGTCATCAAAAATCACAGTCAACTATA
131 CCTGCTCATACAGTAGAATTATGAACATCGACAAAAACCGTCATCAAAAATCACAGTCAACTATA
8431402 GAGCTATGCACCAAAATGGGAGAGAATGGGCAAAGATGGTACCTTCTCAAGTGAGCAACATACTC
196 GAGCTATGCACCAAAATGGGAGAGAATGGGCAAAGATGGTACCTTCTCAAGTGAGCAACATACTC
8431467 TTGTCTTGTCATGTTCTTCATTTCTTCAAGTTCTTTTTGGTAATTCTCCAACTGCAAAAAAAATA
261 TTGTCTTGTCATGTTCTTCATTTCTTCAAGTTCTTTTTGGTAATTCTCCAACTGCAAAAAAAATA
8431532 AAGAACATCATAATTACAGTCAGTACCATAAAAAAAATTTAAAAAGGTTTCCAAGAAAAGCATTA
326 AAGAACATCATAATTACAGTCAGTACCATAAAAAAAATTTAAAAAGGTTTCCAAGAAAAGCATTA
8431597 GATTTGAAAATGTAATGAGAGTTAGATAAGTACTGGGAAATTGATGTGAGTGGAGGGTCCCCAAT
391 GATTTGAAAATGTAATGAGAGTTAGATAAGTACTGGGAAATTGATGTGAGTGGAGGGTCCCCAAT
8431662 ACTTGAGTGCAGCTAGATC
456 ACTTGAGTGCAGCTAGATC
8431681 ATTTATGAGAAAAAAGAGCTGAAATATTATGGGTATTTGCAGTTCAAGTTCCATAAAAATTGAAT
1 ATTTATGAGAAAAAAGAGCTGAAATATTATGGGTATTTGCAGTTCAAGTTCCATAAAAATTGAAT
8431746 TTTTTATAAGGAGACCTTGTCACTCCTCTGTACATTGAAGCTCCCCTTGAAAATCCACTGCTTTT
66 TTTTTATAAGGAGACCTTGTCACTCCTCTGTACATTGAAGCTCCCCTTGAAAATCCACTGCTTTT
8431811 CCTGCTCATACAGTAGAATTATGAACATCGACAAAAACCGTCATCAAAAATCACAGTCAACTATA
131 CCTGCTCATACAGTAGAATTATGAACATCGACAAAAACCGTCATCAAAAATCACAGTCAACTATA
8431876 GAGCTATGCACCAAAATGGGAGAGAATGGGCAAAGATGGTACCTTCTCAAGTGAGCAACATACTC
196 GAGCTATGCACCAAAATGGGAGAGAATGGGCAAAGATGGTACCTTCTCAAGTGAGCAACATACTC
8431941 TTGTCTTGTCATGTTCTTCATTTCTTCAAGTTCTTTTTGGTAATTCTCCAACTGCAAAAAAAATA
261 TTGTCTTGTCATGTTCTTCATTTCTTCAAGTTCTTTTTGGTAATTCTCCAACTGCAAAAAAAATA
8432006 AAGAACATCATAATTACAGTCAGTACCATAAAAAAAATTTAAAAAGGTTTCCAAGAAAAGCATTA
326 AAGAACATCATAATTACAGTCAGTACCATAAAAAAAATTTAAAAAGGTTTCCAAGAAAAGCATTA
8432071 GATTTGAAAATGTAATGAGAGTTAGATAAGTACTGGGAAATTGATGTGAGTGGAGGGTCCCCAAT
391 GATTTGAAAATGTAATGAGAGTTAGATAAGTACTGGGAAATTGATGTGAGTGGAGGGTCCCCAAT
8432136 ACTTGAGTGCAGCTAGATC
456 ACTTGAGTGCAGCTAGATC
8432155 AT
1 AT
8432157 ATGCTCTTGC
Statistics
Matches: 476, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
474 476 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (474 bp):
ATTTATGAGAAAAAAGAGCTGAAATATTATGGGTATTTGCAGTTCAAGTTCCATAAAAATTGAAT
TTTTTATAAGGAGACCTTGTCACTCCTCTGTACATTGAAGCTCCCCTTGAAAATCCACTGCTTTT
CCTGCTCATACAGTAGAATTATGAACATCGACAAAAACCGTCATCAAAAATCACAGTCAACTATA
GAGCTATGCACCAAAATGGGAGAGAATGGGCAAAGATGGTACCTTCTCAAGTGAGCAACATACTC
TTGTCTTGTCATGTTCTTCATTTCTTCAAGTTCTTTTTGGTAATTCTCCAACTGCAAAAAAAATA
AAGAACATCATAATTACAGTCAGTACCATAAAAAAAATTTAAAAAGGTTTCCAAGAAAAGCATTA
GATTTGAAAATGTAATGAGAGTTAGATAAGTACTGGGAAATTGATGTGAGTGGAGGGTCCCCAAT
ACTTGAGTGCAGCTAGATC
Found at i:8458475 original size:20 final size:21
Alignment explanation
Indices: 8458438--8458476 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8458428 AATAATATTT
*
8458438 AAATATTATTCTTTTAATAGG
1 AAATATTATTCATTTAATAGG
8458459 AAATATTATT-ATTTAATA
1 AAATATTATTCATTTAATA
8458477 TTAAATTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (21 bp):
AAATATTATTCATTTAATAGG
Found at i:8464294 original size:13 final size:13
Alignment explanation
Indices: 8464276--8464300 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8464266 ATTTACAAGA
8464276 TTACATAATCAAT
1 TTACATAATCAAT
8464289 TTACATAATCAA
1 TTACATAATCAA
8464301 AACAAATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:8468925 original size:17 final size:17
Alignment explanation
Indices: 8468899--8468936 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8468889 TTAAATGAAA
8468899 ATTATCTCAATTAAAAT-
1 ATTATCTCAA-TAAAATG
*
8468916 ATTATTTCAATAAAATG
1 ATTATCTCAATAAAATG
8468933 ATTA
1 ATTA
8468937 AATTTCACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (17 bp):
ATTATCTCAATAAAATG
Found at i:8471901 original size:12 final size:12
Alignment explanation
Indices: 8471884--8471909 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8471874 GTGTTGTTAA
8471884 AAGACTTTTGGT
1 AAGACTTTTGGT
8471896 AAGACTTTTGGT
1 AAGACTTTTGGT
8471908 AA
1 AA
8471910 AGCACCCACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (12 bp):
AAGACTTTTGGT
Found at i:8473392 original size:21 final size:22
Alignment explanation
Indices: 8473346--8473392 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
8473336 CTCCTTAATC
* *
8473346 GATTATACAGAGAATTTCAGAC
1 GATTAGACAGAGAATTTCAGAA
8473368 GATTAGACAGA-AATTT-AGGAA
1 GATTAGACAGAGAATTTCA-GAA
8473389 GATT
1 GATT
8473393 GAAAACCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 11 0.50
22 10 0.45
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (22 bp):
GATTAGACAGAGAATTTCAGAA
Found at i:8474697 original size:20 final size:21
Alignment explanation
Indices: 8474672--8474711 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8474662 AGGTGGATTT
8474672 ACATAG-GTATAAATTAAAAG
1 ACATAGTGTATAAATTAAAAG
* *
8474692 ACATAGTTTATGAATTAAAA
1 ACATAGTGTATAAATTAAAA
8474712 TTGAAAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (21 bp):
ACATAGTGTATAAATTAAAAG
Found at i:8482157 original size:114 final size:114
Alignment explanation
Indices: 8481944--8482150 Score: 288
Period size: 114 Copynumber: 1.8 Consensus size: 114
8481934 TTACACACTC
* **
8481944 AATCATATAACTTGCTTAGCATATAAAATAATTTTTTGGTAATTCCCTAATTGACTTAGGACTCA
1 AATCATATAACTTACTTAGCATATAAAATAACATTTTGGTAATTCCCTAATTGACTTAGGACTCA
* *
8482009 ATTGATGGGTGGCTCCAACTTAGAAAAAATCTTAACAAAACACCTACTT
66 ATCGATGGGTGGCACCAACTTAGAAAAAATCTTAACAAAACACCTACTT
* * * * * * *
8482058 AATCATATAATTTACTTGGTATATAAATTAACATTTTGGTAATTCCCTAATTGAGTTGGGACTCG
1 AATCATATAACTTACTTAGCATATAAAATAACATTTTGGTAATTCCCTAATTGACTTAGGACTCA
* *
8482123 GTCGATGGGTGGCACCAACTTAGTAAAA
66 ATCGATGGGTGGCACCAACTTAGAAAAA
8482151 TACTTAATAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
114 79 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (114 bp):
AATCATATAACTTACTTAGCATATAAAATAACATTTTGGTAATTCCCTAATTGACTTAGGACTCA
ATCGATGGGTGGCACCAACTTAGAAAAAATCTTAACAAAACACCTACTT
Found at i:8484413 original size:20 final size:20
Alignment explanation
Indices: 8484388--8484433 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
8484378 TAGTAAAGCT
* *
8484388 TAACAACCTATTTAAATAAG
1 TAACAACCTAGTTAAATAAA
*
8484408 TAACAACCTAGTTGAATAAA
1 TAACAACCTAGTTAAATAAA
8484428 TAACAA
1 TAACAA
8484434 AATATTAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (20 bp):
TAACAACCTAGTTAAATAAA
Found at i:8488995 original size:20 final size:20
Alignment explanation
Indices: 8488970--8489008 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8488960 TAGTAAAGCT
8488970 TAACAACCTATTTAAATAAG
1 TAACAACCTATTTAAATAAG
*
8488990 TAACAACCTATTTGAATAA
1 TAACAACCTATTTAAATAA
8489009 ATAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (20 bp):
TAACAACCTATTTAAATAAG
Found at i:8490341 original size:34 final size:33
Alignment explanation
Indices: 8490261--8490346 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 33
8490251 TTCTACTTTG
*
8490261 TGTATCATTATA-TT-AAATTATTTAAATATTA
1 TGTATCATTATATTTAAAATTATTAAAATATTA
*
8490292 T-TAATTATTATATTTAAAATT-TTAAAATATTTTA
1 TGT-ATCATTATATTTAAAATTATTAAAATA--TTA
8490326 TGTATCATTATATTTATAAAT
1 TGTATCATTATATTTA-AAAT
8490347 AATTTATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
30 1 0.02
31 9 0.20
32 9 0.20
33 5 0.11
34 16 0.36
35 5 0.11
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (33 bp):
TGTATCATTATATTTAAAATTATTAAAATATTA
Found at i:8492678 original size:39 final size:40
Alignment explanation
Indices: 8492599--8492688 Score: 112
Period size: 39 Copynumber: 2.3 Consensus size: 40
8492589 TCCACGTAAG
* * *
8492599 CGCGATTTGCTTCCACGTCAGCAAATCGCGCTTACATGGA
1 CGCGATTTGCTTCCACGTAAGCAAATCGCACTGACATGGA
* *
8492639 CGCGATTTG-TTGCCACGTAAG-TAATCGCACTGACGTGGA
1 CGCGATTTGCTT-CCACGTAAGCAAATCGCACTGACATGGA
8492678 CGCGATTTGCT
1 CGCGATTTGCT
8492689 GACACATCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
39 25 0.58
40 18 0.42
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.27
Consensus pattern (40 bp):
CGCGATTTGCTTCCACGTAAGCAAATCGCACTGACATGGA
Found at i:8495651 original size:4 final size:4
Alignment explanation
Indices: 8495644--8495677 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
8495634 TTACACACAC
8495644 AATA AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
8495678 CTCCCAGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:8502311 original size:19 final size:19
Alignment explanation
Indices: 8502287--8502324 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8502277 ATGTTCTTTC
8502287 ATTCTTTACGATTTTTTTT
1 ATTCTTTACGATTTTTTTT
**
8502306 ATTCTTTTGGATTTTTTTT
1 ATTCTTTACGATTTTTTTT
8502325 GCTAAACCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.08, G:0.08, T:0.71
Consensus pattern (19 bp):
ATTCTTTACGATTTTTTTT
Found at i:8503257 original size:7 final size:7
Alignment explanation
Indices: 8503245--8503285 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
8503235 AAAAGTGATG
8503245 TGAAAAA
1 TGAAAAA
8503252 TGAAAAGA
1 TGAAAA-A
8503260 TG-AAAA
1 TGAAAAA
8503266 TGAAAAA
1 TGAAAAA
8503273 TGAAAAA
1 TGAAAAA
*
8503280 AGAAAA
1 TGAAAA
8503286 TGGAGAGGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 3 0.10
7 25 0.81
8 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (7 bp):
TGAAAAA
Found at i:8503269 original size:21 final size:20
Alignment explanation
Indices: 8503245--8503287 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
8503235 AAAAGTGATG
*
8503245 TGAAAAATGAAAAGATGAAAA
1 TGAAAAATGAAAA-AAGAAAA
8503266 TGAAAAATGAAAAAAGAAAA
1 TGAAAAATGAAAAAAGAAAA
8503286 TG
1 TG
8503288 GAGAGGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (20 bp):
TGAAAAATGAAAAAAGAAAA
Found at i:8505016 original size:132 final size:132
Alignment explanation
Indices: 8504553--8505442 Score: 1274
Period size: 132 Copynumber: 6.8 Consensus size: 132
8504543 TAGATAGCGA
* * *
8504553 AGCAGATCGAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
8504618 TCTACTTCCTTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
8504683 GG
131 GG
* *
8504685 AGCAAATAAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * * * *
8504750 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGGTTTTAGATCTTGCCTTCCT--GCATATAC
66 TCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA-GT--
*
8504813 AGCGG
128 AGTGG
* * * *
8504818 AGCAGATCGAAGATGGCGGATTTTACCT-CCTCGTGGTTACAGTGGAGTATATTGAAGCCAGTAA
1 AGCAGATCAAAAATGGCAGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAA
*
8504882 TTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGACCTTGTCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAG
8504947 TGG
130 TGG
* * * * *
8504950 AGCAAATAAAAAATGGCAGATTTTACCTCCCTATGGTTACAGCGGAGCACATTGAAGCCAGTAAT
1 AGCAGATCAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
8505015 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGTCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
*
8505080 AG
131 GG
* * *
8505082 AGCAGATCAAAGATGGCAGATTTTACCTCCCTATGGTTACAGCGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
8505147 TCTACTTCCCTCGG-CAGCAGCGGAATAGATTGAAGATTTCAGATC--GTCTCCCTAAGCAGTAG
66 TCTACTTCCCT-GGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAG
8505209 TGG
130 TGG
* * *
8505212 GGCAGATCAAAAATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * * *
8505277 TCTACTTTCCTGGGCAGCAGTGGAATAGATTGAAGATTTCATATCTTGTCTCCCTAAACAGTAAT
66 TCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
8505342 GG
131 GG
* * *
8505344 AGCAGATCAAAGATGG-TGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAA
1 AGCAGATCAAAAATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
* *
8505408 TTCTA-TCTCCCTGAACAGCAGTGGAGTAGATTGAA
65 TTCTACT-TCCCTGGACAGCAGTGGAATAGATTGAA
8505443 AACCACAAGA
Statistics
Matches: 677, Mismatches: 68, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
129 2 0.00
130 120 0.18
131 3 0.00
132 435 0.64
133 113 0.17
134 1 0.00
135 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (132 bp):
AGCAGATCAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
GG
Found at i:8505302 original size:262 final size:262
Alignment explanation
Indices: 8504553--8505442 Score: 1326
Period size: 265 Copynumber: 3.4 Consensus size: 262
8504543 TAGATAGCGA
* *
8504553 AGCAGATCGAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
8504618 TCTACTTCCTTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATC--GTCTCCCTAAGCAGTAGT
*
8504683 GGAGCAAATAAAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
129 GGAGCAAATAAAAAATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * * * *
8504748 ATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGGTTTTAGATCTTGCCTTCCT--GCATAT
194 ATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA-GT
*
8504811 ACAGCGG
258 --AGTGG
* * *
8504818 AGCAGATCGAAGATGGCGGATTTTACCT-CCTCGTGGTTACAGTGGAGTATATTGAAGCCAGTAA
1 AGCAGATCAAAGATGGCAGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAA
*
8504882 TTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGACCTTGTCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGA--TCGTCTCCCTAAGCAGTAG
* *
8504947 TGGAGCAAATAAAAAATGGCAGATTTTACCTCCCT-ATGGTTACAGCGGAGCACATTGAAGCCAG
128 TGGAGCAAATAAAAAATGGCAGATTTTACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAG
*
8505011 TAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGTCTCCCTAAGCAG
192 TAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAG
*
8505076 TAGTAG
257 TAGTGG
* *
8505082 AGCAGATCAAAGATGGCAGATTTTACCTCCCTATGGTTACAGCGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
8505147 TCTACTTCCCTCGG-CAGCAGCGGAATAGATTGAAGATTTCAGATCGTCTCCCTAAGCAGTAGTG
66 TCTACTTCCCT-GGACAGCAGTGGAATAGATTGAAGATTTCAGATCGTCTCCCTAAGCAGTAGTG
* * * *
8505211 GGGCAGATCAAAAATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAA
130 GAGCAAATAAAAAATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAA
* * * *
8505276 TTCTACTTTCCTGGGCAGCAGTGGAATAGATTGAAGATTTCATATCTTGTCTCCCTAAACAGTAA
195 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAG
8505341 TGG
260 TGG
* *
8505344 AGCAGATCAAAGATGG-TGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAA
1 AGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
* *
8505408 TTCTA-TCTCCCTGAACAGCAGTGGAGTAGATTGAA
65 TTCTACT-TCCCTGGACAGCAGTGGAATAGATTGAA
8505443 AACCACAAGA
Statistics
Matches: 571, Mismatches: 42, Indels: 27
0.89 0.07 0.04
Matches are distributed among these distances:
261 3 0.01
262 225 0.39
263 1 0.00
264 100 0.18
265 237 0.42
266 1 0.00
267 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (262 bp):
AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTCAGATCGTCTCCCTAAGCAGTAGTGG
AGCAAATAAAAAATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
GG
Found at i:8510360 original size:27 final size:26
Alignment explanation
Indices: 8510286--8510374 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 26
8510276 TCATTATGTG
* *
8510286 TTATTTTAACTTGTTTTGTAAATTAT
1 TTATTTTAAATTGTTTTGTATATTAT
**
8510312 TTATTTTAAATTACTTTGTATATTATT
1 TTATTTTAAATTGTTTTGTATATTA-T
* * * *
8510339 TTATTTTTAGTTGTTTTATATATTAA
1 TTATTTTAAATTGTTTTGTATATTAT
8510365 TTATTTTAAA
1 TTATTTTAAA
8510375 ATTATTCTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
26 29 0.58
27 21 0.42
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (26 bp):
TTATTTTAAATTGTTTTGTATATTAT
Found at i:8510928 original size:17 final size:18
Alignment explanation
Indices: 8510895--8510932 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
8510885 TACTCTCACG
*
8510895 TGTATTATATTGCTTATT
1 TGTATTATATTGATTATT
8510913 TGTATT-TATTGATTATT
1 TGTATTATATTGATTATT
8510930 TGT
1 TGT
8510933 CGTTCATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.21, C:0.03, G:0.13, T:0.63
Consensus pattern (18 bp):
TGTATTATATTGATTATT
Found at i:8520901 original size:51 final size:51
Alignment explanation
Indices: 8520829--8520946 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
8520819 AAAATAAACC
* * ** *
8520829 AATATTATAACAATATTTGGTAGTACAAAATTAGTCGAAAGCTCTAAAAGA
1 AATAATATATCAATATTTGGTAACACAAAATTAGTCGAAAGCTCCAAAAGA
* * *
8520880 AATAATATATTAATATTTGGTAACACAAAATTAGTTGAAAGCTCCAGAAGA
1 AATAATATATCAATATTTGGTAACACAAAATTAGTCGAAAGCTCCAAAAGA
**
8520931 GCTAATATATCAATAT
1 AATAATATATCAATAT
8520947 ATAAAAAGAA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.31
Consensus pattern (51 bp):
AATAATATATCAATATTTGGTAACACAAAATTAGTCGAAAGCTCCAAAAGA
Found at i:8529610 original size:25 final size:25
Alignment explanation
Indices: 8529577--8529633 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
8529567 ACCCAAACTG
*
8529577 AAAAG-AAAGA-AAGGAAAAAGAGGT
1 AAAAGAAAAGACAA-GAAAAAGAGGA
* *
8529601 AAAGGAAAAGACAAGAAGAAGAGGA
1 AAAAGAAAAGACAAGAAAAAGAGGA
8529626 AAAAGAAA
1 AAAAGAAA
8529634 TGTGCGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 4 0.15
25 21 0.78
26 2 0.07
ACGTcount: A:0.68, C:0.02, G:0.28, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAGACAAGAAAAAGAGGA
Found at i:8537878 original size:27 final size:27
Alignment explanation
Indices: 8537836--8537889 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
8537826 ATGATAAAGA
* *
8537836 TAATGATATATAATAATTTTAAAATAAT
1 TAATGATATAAAATAA-TTAAAAATAAT
8537864 TAATG-TATAAAATAATTAAAAATAAT
1 TAATGATATAAAATAATTAAAAATAAT
8537890 ACACGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.42
27 9 0.38
28 5 0.21
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (27 bp):
TAATGATATAAAATAATTAAAAATAAT
Found at i:8537879 original size:40 final size:42
Alignment explanation
Indices: 8537794--8537879 Score: 106
Period size: 43 Copynumber: 2.1 Consensus size: 42
8537784 AAATTTAAGC
*
8537794 AATGATGTATAATAATTTAAAAACAATAGTACATGATAAAGAT
1 AATGATATATAATAATTTAAAAACAATA-TACATGATAAAGAT
* *
8537837 AATGATATATAATAATTTTAAAATAAT-TA-ATGTATAAA-AT
1 AATGATATATAATAATTTAAAAACAATATACATG-ATAAAGAT
8537877 AAT
1 AAT
8537880 TAAAAATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
40 8 0.21
41 7 0.18
43 24 0.62
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (42 bp):
AATGATATATAATAATTTAAAAACAATATACATGATAAAGAT
Found at i:8538629 original size:10 final size:10
Alignment explanation
Indices: 8538614--8538638 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8538604 ATAAGAATAT
8538614 AAAAAATAAA
1 AAAAAATAAA
8538624 AAAAAATAAA
1 AAAAAATAAA
8538634 AAAAA
1 AAAAA
8538639 CGATGAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:8539842 original size:11 final size:11
Alignment explanation
Indices: 8539826--8539859 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8539816 TCAATTATTT
*
8539826 TCTCAATCTCC
1 TCTCAATTTCC
*
8539837 TCTCAATTTGC
1 TCTCAATTTCC
8539848 TCTCAATTTCC
1 TCTCAATTTCC
8539859 T
1 T
8539860 TCCAAATTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.35, G:0.03, T:0.44
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:8539854 original size:22 final size:22
Alignment explanation
Indices: 8539822--8539875 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
8539812 TCTCTCAATT
8539822 ATTT-TCTCAATCTCC-TCTC-A
1 ATTTCTCTCAATCTCCTTC-CAA
*
8539842 ATTTGCTCTCAATTTCCTTCCAA
1 ATTT-CTCTCAATCTCCTTCCAA
8539865 ATTTCTCTCAA
1 ATTTCTCTCAA
8539876 ATCCATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 4 0.14
22 18 0.62
23 7 0.24
ACGTcount: A:0.22, C:0.31, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTTCTCTCAATCTCCTTCCAA
Found at i:8539902 original size:51 final size:53
Alignment explanation
Indices: 8539841--8539942 Score: 138
Period size: 51 Copynumber: 2.0 Consensus size: 53
8539831 ATCTCCTCTC
8539841 AATTTGCTCTCAATTTCCT-TCCAAATTTCTCTCAAA-TCC-ATATTTAATTTT
1 AATTTGCTCTCAATTTCCTAT-CAAATTTCTCTCAAATTCCTATATTTAATTTT
* * * *
8539892 AATTTTCTCTCAATTTCCTATTAAATTTCTCTTAAATTCCTATTTTTAATT
1 AATTTGCTCTCAATTTCCTATCAAATTTCTCTCAAATTCCTATATTTAATT
8539943 ATTTTTAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
51 31 0.70
52 4 0.09
53 9 0.20
ACGTcount: A:0.27, C:0.21, G:0.01, T:0.51
Consensus pattern (53 bp):
AATTTGCTCTCAATTTCCTATCAAATTTCTCTCAAATTCCTATATTTAATTTT
Found at i:8539915 original size:22 final size:22
Alignment explanation
Indices: 8539890--8539935 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8539880 ATATTTAATT
* *
8539890 TTAATTTTCTCTCAATTTCCTA
1 TTAAATTTCTCTCAAATTCCTA
*
8539912 TTAAATTTCTCTTAAATTCCTA
1 TTAAATTTCTCTCAAATTCCTA
8539934 TT
1 TT
8539936 TTTAATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.26, C:0.20, G:0.00, T:0.54
Consensus pattern (22 bp):
TTAAATTTCTCTCAAATTCCTA
Found at i:8542379 original size:21 final size:21
Alignment explanation
Indices: 8542353--8542552 Score: 291
Period size: 21 Copynumber: 9.5 Consensus size: 21
8542343 CAAAAACCCT
8542353 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
8542374 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
8542395 AACCCTAACACTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
8542416 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
8542438 AACCCTAACCCTTAA-TTAAAA
1 AACCCTAACCCTTAACTT-AAA
8542459 AACCCTAACCCTTAACTT-AA
1 AACCCTAACCCTTAACTTAAA
8542479 AACCACTAACCCTTAACTT-AA
1 AACC-CTAACCCTTAACTTAAA
*
8542500 AACCCTTAATCCTTAACTTAAA
1 AACCC-TAACCCTTAACTTAAA
* *
8542522 AATCATAACCCTTAACTT-AA
1 AACCCTAACCCTTAACTTAAA
8542542 AACCCTTAACC
1 AACCC-TAACC
8542553 GTAACCCTTA
Statistics
Matches: 164, Mismatches: 8, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.09
21 123 0.75
22 27 0.16
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:8542562 original size:27 final size:28
Alignment explanation
Indices: 8542527--8542579 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
8542517 TTAAAAATCA
8542527 TAACCCTTAACTT-AAAACCCTTAACCG
1 TAACCCTTAACTTAAAAACCCTTAACCG
*
8542554 TAACCCTTAACTTAAAAACTCTTAAC
1 TAACCCTTAACTTAAAAACCCTTAAC
8542580 TTAAAAACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.40, C:0.30, G:0.02, T:0.28
Consensus pattern (28 bp):
TAACCCTTAACTTAAAAACCCTTAACCG
Found at i:8542579 original size:15 final size:15
Alignment explanation
Indices: 8542559--8542587 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8542549 AACCGTAACC
8542559 CTTAACTTAAAAACT
1 CTTAACTTAAAAACT
8542574 CTTAACTTAAAAAC
1 CTTAACTTAAAAAC
8542588 ACCAAAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
CTTAACTTAAAAACT
Found at i:8542839 original size:112 final size:111
Alignment explanation
Indices: 8542634--8542847 Score: 304
Period size: 112 Copynumber: 1.9 Consensus size: 111
8542624 AATCTAACCC
8542634 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
1 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
** *
8542699 CAAAATGTTAGATTTCACAAAATGTTTTGACTGGTACCTAGAATTAA
66 CAAAA-GCCAGATTTCACAAAATATTTTGACTGGTACCTAGAATTAA
* * ** *
8542746 TAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAGTAATTAATAATTTTACTAA
1 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
* *
8542811 CATTCAA-CCAGATTTTACAAAATATTTTGACTGGTAC
66 CA--AAAGCCAGATTTCACAAAATATTTTGACTGGTAC
8542848 AAAAAAAATA
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
112 88 0.98
114 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (111 bp):
TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
CAAAAGCCAGATTTCACAAAATATTTTGACTGGTACCTAGAATTAA
Found at i:8547678 original size:125 final size:125
Alignment explanation
Indices: 8547400--8547841 Score: 672
Period size: 125 Copynumber: 3.5 Consensus size: 125
8547390 CCCAAACATG
* * ** * *
8547400 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCCTAAATTATTCTGATAAAGCATTCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
8547465 TTGAAGCGTTTTTT-TACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
*
8547524 CTACTCTAGCAAAAGCGCGTCCACGTGGGCGCGACTTT-AGAAATTCTTCTGATAAAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGA-TTTCAGAAATTCTTCTGATAAAGCATCCTG
8547588 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
65 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * ** * *
8547649 CAACTGTAGTAAAAGCACAACCACATGGGCGCGATTTCAGAAATTCTTCTAATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
* * * * *
8547714 TTGAAGTGTTTTTTTATACTATTTTCTCATAAACGTCAACTCAAAATTATTTTTTCAGTAC
66 TTGAAGCG-TTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
*
8547775 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCATAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
8547840 TT
66 TT
8547842 TGATTTTATC
Statistics
Matches: 286, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
124 71 0.25
125 108 0.38
126 107 0.37
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:8549719 original size:21 final size:20
Alignment explanation
Indices: 8549689--8549727 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8549679 ATTTAAAAAG
8549689 TAAAAAAAAAATTAAATTCT
1 TAAAAAAAAAATTAAATTCT
*
8549709 TAAAAATAAAAGTTAAATT
1 TAAAAA-AAAAATTAAATT
8549728 GATGAAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
TAAAAAAAAAATTAAATTCT
Found at i:8557176 original size:5 final size:5
Alignment explanation
Indices: 8557168--8557195 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8557158 TATTATATAT
8557168 TTAAA TTAAA TTAAA TTAAA TTAAA TTA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTA
8557196 CCCACAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TTAAA
Found at i:8558334 original size:15 final size:15
Alignment explanation
Indices: 8558311--8558341 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8558301 ATTTTTATTA
*
8558311 TAATTATAAATATAT
1 TAATAATAAATATAT
8558326 TAATAATAAATATAT
1 TAATAATAAATATAT
8558341 T
1 T
8558342 GTAGTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAATAATAAATATAT
Found at i:8559143 original size:21 final size:20
Alignment explanation
Indices: 8559106--8559146 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8559096 CACCCAAACA
*
8559106 TAAAAAAGTATTAATTTTTC
1 TAAAAAAGTAGTAATTTTTC
*
8559126 TAAAAAAGTAAGTCATTTTTC
1 TAAAAAAGT-AGTAATTTTTC
8559147 AGAAATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (20 bp):
TAAAAAAGTAGTAATTTTTC
Found at i:8559920 original size:9 final size:9
Alignment explanation
Indices: 8559908--8559960 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
8559898 CTTTGAGCCC
8559908 TTTCTTTTA
1 TTTCTTTTA
8559917 TTTCTTTTA
1 TTTCTTTTA
*
8559926 TTTCTTTGAA
1 TTTCTTT-TA
8559936 CCCTTTCTTTTA
1 ---TTTCTTTTA
*
8559948 TTTCTTTAA
1 TTTCTTTTA
8559957 TTTC
1 TTTC
8559961 AAATTTTGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 28 0.76
10 1 0.03
12 1 0.03
13 7 0.19
ACGTcount: A:0.13, C:0.17, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTCTTTTA
Done.