Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 34 of 185
Found at i:10183747 original size:203 final size:203
Alignment explanation
Indices: 10183398--10183805 Score: 816
Period size: 203 Copynumber: 2.0 Consensus size: 203
10183388 GAGTCGGCCA
10183398 CCACTAGAAGGAAATCAATTTAATTCCCTTGCTGATTTTGTCGCACATTGAACCTGCTATATTTC
1 CCACTAGAAGGAAATCAATTTAATTCCCTTGCTGATTTTGTCGCACATTGAACCTGCTATATTTC
10183463 TGTTTGGACCGACTTTTTGCTCCTGCTGTCAAGACTTTTTGCTGCCAATTAAAAGTGAATGCATC
66 TGTTTGGACCGACTTTTTGCTCCTGCTGTCAAGACTTTTTGCTGCCAATTAAAAGTGAATGCATC
10183528 AGTCGCTCAATCCCCTTCCGTCAACTCTATCCGTGAGCTCCTCCTTTGGATTTGTTCGATCCATC
131 AGTCGCTCAATCCCCTTCCGTCAACTCTATCCGTGAGCTCCTCCTTTGGATTTGTTCGATCCATC
10183593 CCTACGTG
196 CCTACGTG
10183601 CCACTAGAAGGAAATCAATTTAATTCCCTTGCTGATTTTGTCGCACATTGAACCTGCTATATTTC
1 CCACTAGAAGGAAATCAATTTAATTCCCTTGCTGATTTTGTCGCACATTGAACCTGCTATATTTC
10183666 TGTTTGGACCGACTTTTTGCTCCTGCTGTCAAGACTTTTTGCTGCCAATTAAAAGTGAATGCATC
66 TGTTTGGACCGACTTTTTGCTCCTGCTGTCAAGACTTTTTGCTGCCAATTAAAAGTGAATGCATC
10183731 AGTCGCTCAATCCCCTTCCGTCAACTCTATCCGTGAGCTCCTCCTTTGGATTTGTTCGATCCATC
131 AGTCGCTCAATCCCCTTCCGTCAACTCTATCCGTGAGCTCCTCCTTTGGATTTGTTCGATCCATC
10183796 CCTACGTG
196 CCTACGTG
10183804 CC
1 CC
10183806 TACCTTGCAG
Statistics
Matches: 205, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
203 205 1.00
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (203 bp):
CCACTAGAAGGAAATCAATTTAATTCCCTTGCTGATTTTGTCGCACATTGAACCTGCTATATTTC
TGTTTGGACCGACTTTTTGCTCCTGCTGTCAAGACTTTTTGCTGCCAATTAAAAGTGAATGCATC
AGTCGCTCAATCCCCTTCCGTCAACTCTATCCGTGAGCTCCTCCTTTGGATTTGTTCGATCCATC
CCTACGTG
Found at i:10188121 original size:26 final size:26
Alignment explanation
Indices: 10188092--10188150 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
10188082 TACCTACAAT
10188092 AGTTTCAGAATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* *
10188118 AGTTTCAGAATATCATAGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
10188144 AGTTTCA
1 AGTTTCA
10188151 TAACACTTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:10188915 original size:33 final size:34
Alignment explanation
Indices: 10188863--10188928 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
10188853 GCATAGTTGA
* *
10188863 ACAGTCTTGGGCCTAAGCCC-TTTCAGTATCAGTG
1 ACAGTCTTAGGCCTAAGCCCATCTCAGTA-CAGTG
*
10188897 ACAG-CTTAGGCCTTAGCCCATCTCAGTACAGT
1 ACAGTCTTAGGCCTAAGCCCATCTCAGTACAGT
10188929 ATAAAAATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 17 0.61
34 11 0.39
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (34 bp):
ACAGTCTTAGGCCTAAGCCCATCTCAGTACAGTG
Found at i:10192768 original size:20 final size:18
Alignment explanation
Indices: 10192723--10192770 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
10192713 TTAGAAAAAC
10192723 TTTA-TTTTTATTAATTT
1 TTTATTTTTTATTAATTT
*
10192740 TTCTGTTTTTATATTAATATT
1 TT-TATTTTT-TATTAAT-TT
10192761 TTTATTTTTT
1 TTTATTTTTT
10192771 TTTCAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 2 0.08
18 1 0.04
19 5 0.20
20 13 0.52
21 4 0.16
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTATTTTTTATTAATTT
Found at i:10193899 original size:16 final size:15
Alignment explanation
Indices: 10193874--10193903 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10193864 ATGTTGGCTA
10193874 AATTGATTTCAAAAG
1 AATTGATTTCAAAAG
10193889 AATTCGATTTCAAAA
1 AATT-GATTTCAAAA
10193904 CATGGAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (15 bp):
AATTGATTTCAAAAG
Found at i:10197512 original size:14 final size:14
Alignment explanation
Indices: 10197495--10197532 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
10197485 TTTTTTATTT
*
10197495 TTATTTTTATTTTA
1 TTATTGTTATTTTA
*
10197509 TTATTGTTATTATA
1 TTATTGTTATTTTA
10197523 TTATTGTTAT
1 TTATTGTTAT
10197533 ATCTTACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (14 bp):
TTATTGTTATTTTA
Found at i:10199413 original size:42 final size:41
Alignment explanation
Indices: 10199300--10199443 Score: 119
Period size: 43 Copynumber: 3.4 Consensus size: 41
10199290 CGAAAAGCTC
* * * * *
10199300 ATACAATGCCAACGTCTCAGACGAGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCTCAGAC-AGGTCTTACACGAAACCAA
* * * * *
10199342 ATGTCGATGCCACTGTCCCAAACAGGGTCTTACACGAAACCAT
1 AT-ACGATGCCAATGTCTCAGACA-GGTCTTACACGAAACCAA
*
10199385 ATACGATGCCAATGTCTCAGACACGGTCTTACACATAAATCTCAA
1 ATACGATGCCAATGTCTCAGACA-GGTCTTACAC-GAAA-C-CAA
10199430 AT-CGATGCCAATGT
1 ATACGATGCCAATGT
10199444 TCCAAACATT
Statistics
Matches: 80, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
42 30 0.38
43 33 0.41
44 13 0.16
45 4 0.05
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (41 bp):
ATACGATGCCAATGTCTCAGACAGGTCTTACACGAAACCAA
Found at i:10199441 original size:44 final size:42
Alignment explanation
Indices: 10199345--10199468 Score: 126
Period size: 44 Copynumber: 2.9 Consensus size: 42
10199335 TAATCAAATG
* * * * *
10199345 TCGATGCCACTGTCCCAAACAGGGTCTTACACGAAA-CCATA
1 TCGATGCCAATGTCTCAAACACGGTCTTACACAAAATCCAAA
*
10199386 TACGATGCCAATGTCTCAGACACGGTCTTACACATAAATCTCAAA
1 T-CGATGCCAATGTCTCAAACACGGTCTTACACA-AAATC-CAAA
**
10199431 TCGATGCCAATGT-TCCAAACATTGTCTTACACAAAATC
1 TCGATGCCAATGTCT-CAAACACGGTCTTACACAAAATC
10199469 ACATATCAGA
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.39
43 9 0.13
44 28 0.41
45 4 0.06
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (42 bp):
TCGATGCCAATGTCTCAAACACGGTCTTACACAAAATCCAAA
Found at i:10202934 original size:21 final size:23
Alignment explanation
Indices: 10202889--10202935 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
10202879 TCACCTGCAA
* *
10202889 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
10202912 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
10202933 TAA
1 TAA
10202936 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:10208209 original size:14 final size:14
Alignment explanation
Indices: 10208190--10208225 Score: 58
Period size: 12 Copynumber: 2.7 Consensus size: 14
10208180 AAACTAGCTC
10208190 TTTTTTTTCACAAT
1 TTTTTTTTCACAAT
10208204 TTTTTTTT--CAAT
1 TTTTTTTTCACAAT
10208216 TTTTTTTTCA
1 TTTTTTTTCA
10208226 AGAAACTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 12 0.60
14 8 0.40
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTTTTCACAAT
Found at i:10213762 original size:25 final size:25
Alignment explanation
Indices: 10213729--10213850 Score: 65
Period size: 25 Copynumber: 4.9 Consensus size: 25
10213719 ATATATAAAG
* * * *
10213729 TATAAAAATATATTTTATCAAAATA
1 TATAAAAATAAAATATATAAAAATA
*
10213754 TATACAAATAAAATATATAAAAATA
1 TATAAAAATAAAATATATAAAAATA
* * * *
10213779 TAT-ATAAT--ATTTTA-AAAAACA
1 TATAAAAATAAAATATATAAAAATA
* *
10213800 TATAAAAATAATATATATACAAAAAAA
1 TATAAAAATAA-A-ATATATAAAAATA
*
10213827 TTATAAATATAAAAT-TATTAAAAA
1 -TATAAAAATAAAATATA-TAAAAA
10213851 CGTAAATCTA
Statistics
Matches: 73, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
21 9 0.12
22 8 0.11
24 3 0.04
25 26 0.36
26 10 0.14
27 7 0.10
28 10 0.14
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (25 bp):
TATAAAAATAAAATATATAAAAATA
Found at i:10213788 original size:17 final size:16
Alignment explanation
Indices: 10213715--10213840 Score: 56
Period size: 15 Copynumber: 8.2 Consensus size: 16
10213705 ATTACTTTTG
10213715 AAAAATATATAAAGTAT
1 AAAAATATATAAA-TAT
**
10213732 AAAAATATAT-TTTAT
1 AAAAATATATAAATAT
*
10213747 CAAAATATATACAA-AT
1 AAAAATATATA-AATAT
*
10213763 AAAATATATAAAAATAT
1 AAAA-ATATATAAATAT
* *
10213780 ATATAATAT-T--TTA-
1 A-AAAATATATAAATAT
* *
10213793 AAAAACATATAAAAAT
1 AAAAATATATAAATAT
* *
10213809 -AATATATATACA-A-
1 AAAAATATATAAATAT
10213822 AAAAAT-TATAAATAT
1 AAAAATATATAAATAT
10213837 AAAA
1 AAAA
10213841 TTATTAAAAA
Statistics
Matches: 78, Mismatches: 19, Indels: 26
0.63 0.15 0.21
Matches are distributed among these distances:
12 5 0.06
13 7 0.09
14 8 0.10
15 26 0.33
16 7 0.09
17 23 0.29
18 2 0.03
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (16 bp):
AAAAATATATAAATAT
Found at i:10213956 original size:15 final size:16
Alignment explanation
Indices: 10213936--10213968 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10213926 TTAATCTATA
10213936 TTTATAT-TTTTAAAT
1 TTTATATATTTTAAAT
*
10213951 TTTATATATTTTCAAT
1 TTTATATATTTTAAAT
10213967 TT
1 TT
10213969 CAAAATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATATATTTTAAAT
Found at i:10215193 original size:50 final size:51
Alignment explanation
Indices: 10215134--10215231 Score: 180
Period size: 50 Copynumber: 1.9 Consensus size: 51
10215124 AGGGGAAGCC
10215134 ATGGTTAGGGTTTTCAAGCTTCCAAGCTCGA-TGTAAGTCCGTTCTAAGTT
1 ATGGTTAGGGTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAAGTT
*
10215184 ATGGTTAGGGTTTTCAAGCTTTCAAGCTCGATTGTAAGTCCGTTCTAA
1 ATGGTTAGGGTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAA
10215232 CCCCGTTTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 30 0.65
51 16 0.35
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.37
Consensus pattern (51 bp):
ATGGTTAGGGTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAAGTT
Found at i:10216010 original size:51 final size:50
Alignment explanation
Indices: 10215841--10216031 Score: 183
Period size: 51 Copynumber: 3.8 Consensus size: 50
10215831 TAAAAGTGAA
* * * *
10215841 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA-ATGCATCAGAT
* * * *
10215891 A-AGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACT-ATGCGTACCGAAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTAATGCAT-CAG-AT
* * * *
10215942 AGCT-TTGATCACGTGTGTAGTACTATGTGCAGGCAACTAAATGCATCAGAT
1 AG-TGATGGTCACATGTGTAGTACTATGTGCAGGCTACT-AATGCATCAGAT
*
10215993 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
10216032 TGTGAACCGG
Statistics
Matches: 111, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
48 2 0.02
49 5 0.05
50 34 0.31
51 62 0.56
52 3 0.03
53 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTAATGCATCAGAT
Found at i:10216032 original size:102 final size:101
Alignment explanation
Indices: 10215849--10216033 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
10215839 AAAGTGATGG
* ** * *
10215849 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCAACTAAATGCACCAGAAAGATAGGTCACATGTGTAGTAC
10215914 TATGTGCAGGCTACTATGCGTACCGAATAGCTTTGA
66 TATGTGCAGGCTACTATGCGTACCGAATAGCTTTGA
* *
10215950 TCACGTGTGTAGTACTATGTGCAGGCAACTAAATGCATCAGATAG-TGATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCAACTAAATGCACCAGAAAGAT-A-GGTCACATGTGTAGT
*
10216014 ACTATGTGTAGGCTACTATG
64 ACTATGTGCAGGCTACTATG
10216034 TGAACCGGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 1 0.01
101 40 0.54
102 33 0.45
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCAACTAAATGCACCAGAAAGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGAATAGCTTTGA
Found at i:10216109 original size:46 final size:43
Alignment explanation
Indices: 10216037--10216135 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
10216027 TACTATGTGA
*
10216037 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCT-AATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
* *
10216080 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
10216126 ACCGTGTATC
1 ACCG-GTATC
10216136 TGTTATTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 11 0.23
45 2 0.04
46 26 0.54
47 4 0.08
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:10216270 original size:30 final size:29
Alignment explanation
Indices: 10216236--10216292 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
10216226 ATGTGTGGAA
*
10216236 TTGAATTGAATAATGATTACAAAGTGAATT
1 TTGAATTGAATAATGACTA-AAAGTGAATT
*
10216266 TTGAATTGAATAGTGACTAAAAGTGAA
1 TTGAATTGAATAATGACTAAAAGTGAA
10216293 AAAGTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (29 bp):
TTGAATTGAATAATGACTAAAAGTGAATT
Found at i:10224764 original size:41 final size:41
Alignment explanation
Indices: 10224704--10224895 Score: 173
Period size: 41 Copynumber: 4.8 Consensus size: 41
10224694 GACTTTAGTG
* *
10224704 GCGTTTTTCAAAAAGCGCCGCTAATGCT-AGAGGATTTAGCA
1 GCGTTTTTTAGAAAGCGCCGCTAATGCTCAG-GGATTTAGCA
* * *
10224745 GCGTTTTTTAGAAACCGCCGCTAATGCTCTGGGCTTTAGCA
1 GCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGGATTTAGCA
* * * *
10224786 GCATTTTTTAGAAAGCGCCGCTAATTCTC-TGG-----GCG
1 GCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGGATTTAGCA
* * * * * * *
10224821 GCGTTTTTGAAGAAAGTGCCACTATTGCTCTGGGCTTTAGCG
1 GCGTTTTT-TAGAAAGCGCCGCTAATGCTCAGGGATTTAGCA
10224863 GCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGG
1 GCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGG
10224896 GCTTTTAACG
Statistics
Matches: 121, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
35 9 0.07
36 16 0.13
37 2 0.02
40 2 0.02
41 80 0.66
42 12 0.10
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (41 bp):
GCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGGATTTAGCA
Found at i:10225125 original size:7 final size:7
Alignment explanation
Indices: 10225115--10225174 Score: 50
Period size: 7 Copynumber: 8.7 Consensus size: 7
10225105 AGAGTTTTGA
10225115 GTTTAGG
1 GTTTAGG
*
10225122 GTTTATG
1 GTTTAGG
*
10225129 GTGTA-G
1 GTTTAGG
*
10225135 GTTTAAG
1 GTTTAGG
* *
10225142 GCTTGGG
1 GTTTAGG
10225149 GTTTAGG
1 GTTTAGG
* *
10225156 GTATAAG
1 GTTTAGG
10225163 GTTTAGG
1 GTTTAGG
10225170 GTTTA
1 GTTTA
10225175 CGTTGTAATG
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
6 5 0.12
7 35 0.88
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:10226840 original size:31 final size:31
Alignment explanation
Indices: 10226802--10226881 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
10226792 TTGGATTTTA
*
10226802 ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCAGCTAAGATGGTACATTCT
10226833 ATTGGTTTTTGCTA-CTAAGATGGTACATTCT
1 ATTGGTTTTTGC-AGCTAAGATGGTACATTCT
*
10226864 ATTGATTTTTGCAGCTAA
1 ATTGGTTTTTGCAGCTAA
10226882 ATCAACCATG
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
30 1 0.02
31 43 0.96
32 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.44
Consensus pattern (31 bp):
ATTGGTTTTTGCAGCTAAGATGGTACATTCT
Found at i:10228701 original size:27 final size:27
Alignment explanation
Indices: 10228670--10228847 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10228660 TAAATTGTAC
10228670 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10228697 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10228723 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10228751 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10228779 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10228806 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10228833 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10228848 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10228784 original size:82 final size:81
Alignment explanation
Indices: 10228671--10228826 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10228661 AAATTGTACA
* *
10228671 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10228735 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
10228752 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10228817 TGCGAGTTGA
65 TGCGAATTGA
10228827 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10228838 original size:82 final size:81
Alignment explanation
Indices: 10228667--10228847 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10228657 GATTAAATTG
* *
10228667 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10228732 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10228748 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10228812 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10228830 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10228848 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10236764 original size:27 final size:27
Alignment explanation
Indices: 10236733--10236910 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10236723 TAAATTGTAC
10236733 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10236760 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10236786 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10236814 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10236842 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10236869 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10236896 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10236911 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10236847 original size:82 final size:81
Alignment explanation
Indices: 10236734--10236889 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10236724 AAATTGTACA
* *
10236734 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10236798 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
10236815 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10236880 TGCGAGTTGA
65 TGCGAATTGA
10236890 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10236901 original size:82 final size:81
Alignment explanation
Indices: 10236730--10236910 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10236720 GATTAAATTG
* *
10236730 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10236795 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10236811 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10236875 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10236893 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10236911 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10238626 original size:12 final size:12
Alignment explanation
Indices: 10238609--10238636 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
10238599 GCTAGCCATG
10238609 ATGTTACTATTA
1 ATGTTACTATTA
10238621 ATGTTACTATTA
1 ATGTTACTATTA
10238633 ATGT
1 ATGT
10238637 CCTTAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (12 bp):
ATGTTACTATTA
Found at i:10239249 original size:16 final size:16
Alignment explanation
Indices: 10239224--10239257 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10239214 TAAAAACTCC
*
10239224 AGTGAGATGAATGTTT
1 AGTGAAATGAATGTTT
10239240 AGTGAAATGAATGTTT
1 AGTGAAATGAATGTTT
10239256 AG
1 AG
10239258 ATTTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (16 bp):
AGTGAAATGAATGTTT
Found at i:10239995 original size:43 final size:43
Alignment explanation
Indices: 10239948--10240082 Score: 200
Period size: 43 Copynumber: 3.1 Consensus size: 43
10239938 TTTTTATGAC
10239948 CTTTAGCGGCGTTTGTGGGTAAAGTGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGTTTGTGGGTAAAGTGCCGCTAAAGATCATGTT
* * *
10239991 CTTTAGCGGCGTTTGTGGGTAAAGCGTCGCTAAAGATGATGTT
1 CTTTAGCGGCGTTTGTGGGTAAAGTGCCGCTAAAGATCATGTT
* * *
10240034 CTTTAGTGGCGTTTGTGGGTAAAGCT-CCGCTAAAGAACATGAT
1 CTTTAGCGGCGTTTGTGGGTAAAG-TGCCGCTAAAGATCATGTT
10240077 CTTTAG
1 CTTTAG
10240083 TGGAGTTTTT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.33
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGTAAAGTGCCGCTAAAGATCATGTT
Found at i:10252267 original size:57 final size:58
Alignment explanation
Indices: 10252200--10252364 Score: 217
Period size: 58 Copynumber: 2.9 Consensus size: 58
10252190 TGAATGAAAA
** * ** *
10252200 TGAACAGGAAATATTCTCTGGCAAGAACAGTAAATATTCTCT--TTAGAAAAAGACGAG
1 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAG-AAAAGACAAG
10252257 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAAAAGACAAG
1 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAAAAGACAAG
* * * *
10252315 TGAACAGAAAATATTCTCTAGCGTGAATAGTAAATATTCCCTGGCAAGAA
1 TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAA
10252365 CAGTAGAAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
57 39 0.41
58 55 0.57
59 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (58 bp):
TGAACAGGAAATATTCTCTGGCGTGAACAGTAAATATTCCCTGACAAGAAAAGACAAG
Found at i:10252369 original size:23 final size:23
Alignment explanation
Indices: 10252316--10252369 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
10252306 AAAGACAAGT
* * **
10252316 GAACAGAAAATATTCTCTAGCGT
1 GAACAGTAAATATTCCCTAGCAA
* *
10252339 GAATAGTAAATATTCCCTGGCAA
1 GAACAGTAAATATTCCCTAGCAA
10252362 GAACAGTA
1 GAACAGTA
10252370 GAAATCTCTA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (23 bp):
GAACAGTAAATATTCCCTAGCAA
Found at i:10252812 original size:57 final size:59
Alignment explanation
Indices: 10252659--10252823 Score: 239
Period size: 58 Copynumber: 2.9 Consensus size: 59
10252649 ATTTCTACTG
* * * *
10252659 TTCTTGCCAGGGAATATTTACTGTTC-ACGCTATAGAATATTTCCTGTTCACTCGTCTT
1 TTCTTGCCAGGGAATATTTATTGTTCTACGCCAAAGAATATTTCCTGTTCACTAGTCTT
*
10252717 TTCTTGCCAGGGAATATTTATTGTT-TACGCCAGAGAATATTTCCTGTTCACTAGTCTT
1 TTCTTGCCAGGGAATATTTATTGTTCTACGCCAAAGAATATTTCCTGTTCACTAGTCTT
* *
10252775 TTCTTG-CAGGGAATATTTATTGTTCTA-GCCAAAGAATATTCCCTATTCA
1 TTCTTGCCAGGGAATATTTATTGTTCTACGCCAAAGAATATTTCCTGTTCA
10252824 TCTCTAAAGA
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
57 37 0.38
58 61 0.62
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.41
Consensus pattern (59 bp):
TTCTTGCCAGGGAATATTTATTGTTCTACGCCAAAGAATATTTCCTGTTCACTAGTCTT
Found at i:10268074 original size:13 final size:13
Alignment explanation
Indices: 10268056--10268080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10268046 ATTAAAAATG
10268056 TTTTAAAATTTAT
1 TTTTAAAATTTAT
10268069 TTTTAAAATTTA
1 TTTTAAAATTTA
10268081 AAATGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAAAATTTAT
Found at i:10268091 original size:30 final size:33
Alignment explanation
Indices: 10268041--10268101 Score: 83
Period size: 30 Copynumber: 1.9 Consensus size: 33
10268031 AATTAAAATA
*
10268041 AAAATATTAAAAATGTTTTAAA-ATTTATTTTT
1 AAAATATTAAAAATGATTTAAATATTTATTTTT
*
10268073 AAAAT-TT-AAAATGATTTAAATTTTTATTT
1 AAAATATTAAAAATGATTTAAATATTTATTT
10268102 CAAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 12 0.46
31 9 0.35
32 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (33 bp):
AAAATATTAAAAATGATTTAAATATTTATTTTT
Found at i:10268691 original size:40 final size:40
Alignment explanation
Indices: 10268645--10268738 Score: 134
Period size: 40 Copynumber: 2.4 Consensus size: 40
10268635 ATTTGGATAC
* * *
10268645 AAAACGCCGCTAAAGATCGAGCGTTAGCGGTGCTTTTTGG
1 AAAACGCCGCTAAAGATCGAGAGTTAGCGGCGCTTTATGG
* *
10268685 AAAACGCCGCTAAAGATCGAGATTTAGTGGCGCTTTATGG
1 AAAACGCCGCTAAAGATCGAGAGTTAGCGGCGCTTTATGG
*
10268725 AAATCGCCGCTAAA
1 AAAACGCCGCTAAA
10268739 AATAAGCATT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
AAAACGCCGCTAAAGATCGAGAGTTAGCGGCGCTTTATGG
Found at i:10268946 original size:41 final size:41
Alignment explanation
Indices: 10268885--10268989 Score: 131
Period size: 41 Copynumber: 2.6 Consensus size: 41
10268875 GCTAAAGCCC
* *
10268885 TTTTTGAGAAAGCG-TCGCTAATGCTTAAGGCTCTATCTACG
1 TTTTTGAGAAAGCGCT-GCTAATGCTTAAGGCTCTAGCGACG
* * * **
10268926 TTTTTGGGAAAGCGCTGCTAATGCTTAGGGCTTTAGCGGTG
1 TTTTTGAGAAAGCGCTGCTAATGCTTAAGGCTCTAGCGACG
10268967 TTTTTGAGAAAGCGCTGCTAATG
1 TTTTTGAGAAAGCGCTGCTAATG
10268990 TTCTATTTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 54 0.98
42 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (41 bp):
TTTTTGAGAAAGCGCTGCTAATGCTTAAGGCTCTAGCGACG
Found at i:10269294 original size:22 final size:21
Alignment explanation
Indices: 10269269--10269322 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
10269259 GTGTTACCAT
10269269 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTA-GGG
* * *
10269291 TTTAGGGTTTTTGGTTTAGGG
1 TTTAAGGTTTATGGATTAGGG
* *
10269312 TATATGGTTTA
1 TTTAAGGTTTA
10269323 AATAGGTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (21 bp):
TTTAAGGTTTATGGATTAGGG
Found at i:10269302 original size:75 final size:75
Alignment explanation
Indices: 10269215--10269399 Score: 325
Period size: 75 Copynumber: 2.5 Consensus size: 75
10269205 TATCACTATA
*
10269215 GTTTAGGGTTTTTTGTTTAGGGTATATGGTTTAAATAGGTTTAGGTGTTACCATTTTAAGGTTTA
1 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAATAGGTTTAGGTGTTACCATTTTAAGGTTTA
10269280 TGGATTATGG
66 TGGATTATGG
10269290 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAATAGGTTTAGGTGTTACCATTTTAAGGTTTA
1 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAATAGGTTTAGGTGTTACCATTTTAAGGTTTA
10269355 TGGATTATGG
66 TGGATTATGG
* * * *
10269365 GTTTAGGGATTATGGTTTATGGTTTATGGTTTAAA
1 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAA
10269400 GGTTGGGGTT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 105 1.00
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.48
Consensus pattern (75 bp):
GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAAATAGGTTTAGGTGTTACCATTTTAAGGTTTA
TGGATTATGG
Found at i:10269308 original size:14 final size:14
Alignment explanation
Indices: 10269289--10269322 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10269279 ATGGATTATG
* *
10269289 GGTTTAGGGTTTTT
1 GGTTTAGGGTATAT
10269303 GGTTTAGGGTATAT
1 GGTTTAGGGTATAT
10269317 GGTTTA
1 GGTTTA
10269323 AATAGGTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
GGTTTAGGGTATAT
Found at i:10269362 original size:7 final size:7
Alignment explanation
Indices: 10269344--10269483 Score: 70
Period size: 7 Copynumber: 19.6 Consensus size: 7
10269334 GTGTTACCAT
*
10269344 TTTAAGG
1 TTTATGG
10269351 TTTATGG
1 TTTATGG
*
10269358 ATTATGGG
1 TTTAT-GG
*
10269366 TTTAGGG
1 TTTATGG
*
10269373 ATTATGG
1 TTTATGG
10269380 TTTATGG
1 TTTATGG
10269387 TTTATGG
1 TTTATGG
*
10269394 TTTAAAGG
1 TTT-ATGG
**
10269402 -TTGGGG
1 TTTATGG
*
10269408 TTTAAGG
1 TTTATGG
10269415 TTTA-GAG
1 TTTATG-G
* *
10269422 GTCATGTG
1 TTTATG-G
* *
10269430 TTAAGGG
1 TTTATGG
10269437 TTTATGG
1 TTTATGG
*
10269444 TTTTAGGG
1 -TTTATGG
*
10269452 TTTTAAGG
1 -TTTATGG
10269460 TTTA-GG
1 TTTATGG
10269466 TTTATGG
1 TTTATGG
*
10269473 TTTAGGG
1 TTTATGG
10269480 TTTA
1 TTTA
10269484 GATTAACTAG
Statistics
Matches: 103, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
6 9 0.09
7 68 0.66
8 26 0.25
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (7 bp):
TTTATGG
Found at i:10269481 original size:14 final size:14
Alignment explanation
Indices: 10269344--10269483 Score: 97
Period size: 14 Copynumber: 9.8 Consensus size: 14
10269334 GTGTTACCAT
*
10269344 TTTAAGGTTTATGG
1 TTTAGGGTTTATGG
* *
10269358 ATTATGGGTTTAGGG
1 TTTA-GGGTTTATGG
* *
10269373 ATTATGGTTTATGG
1 TTTAGGGTTTATGG
* *
10269387 TTTATGGTTTAAAGG
1 TTTAGGGTTT-ATGG
* *
10269402 -TTGGGGTTTAAGG
1 TTTAGGGTTTATGG
*
10269415 TTTAGAGG-TCATGTG
1 TTTAG-GGTTTATG-G
*
10269430 TTAAGGGTTTATGG
1 TTTAGGGTTTATGG
*
10269444 TTTTAGGGTTTTAAGG
1 -TTTAGGG-TTTATGG
10269460 TTTA-GGTTTATGG
1 TTTAGGGTTTATGG
10269473 TTTAGGGTTTA
1 TTTAGGGTTTA
10269484 GATTAACTAG
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
13 14 0.14
14 44 0.44
15 36 0.36
16 6 0.06
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:10270184 original size:24 final size:25
Alignment explanation
Indices: 10270148--10270195 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
10270138 TTAAAATGAA
10270148 TTTTAAAAGATTT-TAAACTTTTAT
1 TTTTAAAAGATTTATAAACTTTTAT
* * *
10270172 TTTTATAATATTTATATACTTTTA
1 TTTTAAAAGATTTATAAACTTTTA
10270196 AAGAAAAGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTTAAAAGATTTATAAACTTTTAT
Found at i:10274023 original size:43 final size:43
Alignment explanation
Indices: 10273962--10274052 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
10273952 CTTTGACTTC
* *
10273962 ATTA-CAAGATTTCTTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTCTTTGATTAAGAAAATGCATTATATCTTTT
* *
10274004 ATTACCAAGATTTAC-TTGATTAAGAAAATGCATTGTATTTTTT
1 ATTACCAAGATTT-CTTTGATTAAGAAAATGCATTATATCTTTT
10274047 ATTACC
1 ATTACC
10274053 TTGCAATGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 4 0.09
43 38 0.88
44 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (43 bp):
ATTACCAAGATTTCTTTGATTAAGAAAATGCATTATATCTTTT
Found at i:10274513 original size:43 final size:43
Alignment explanation
Indices: 10274439--10274766 Score: 455
Period size: 43 Copynumber: 7.7 Consensus size: 43
10274429 CGAGAAGCAT
* * * *
10274439 CGCTAAAGGT-TTGTTCTGTAGCGGCGCTTGTGGGAAAAGCGC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
* *
10274481 CGCTAAAGGTCTTGATCTATAGCGGCATTTGTGAAAAAAGCGC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
10274524 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
10274567 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
* * *
10274610 CGCTAAAGGTCTTGAGCTATAGCTGCGTTTGTGG-TAAAGCGC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
* * * * *
10274652 TGCTAAAAGTCTTGATCTATAGTGGCGTTTGT-GTAAAAGCAC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
* * * *
10274694 CGCTAAAGGTCCTGATCTATAGCGGCATTTGTGGGAAAAGCAC
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
* *
10274737 CGGTAAAGGTCATGATCTATAGCGGCGTTT
1 CGCTAAAGGTCTTGATCTATAGCGGCGTTT
10274767 ATTTCCAAAA
Statistics
Matches: 256, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
41 1 0.00
42 77 0.30
43 178 0.70
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGC
Found at i:10278188 original size:55 final size:54
Alignment explanation
Indices: 10278088--10278273 Score: 137
Period size: 52 Copynumber: 3.3 Consensus size: 54
10278078 ATGCTACGTA
* * *
10278088 ACAATCGATTTAAACATATAAACAATCTATTCAAATTAAGAAGAAGCAGTATTCCACTATA
1 ACAATTGATTTAAACATATAAACAATCGATTC------AGAAGAAGCAGTATTCCAC-ATG
* * *
10278149 ACAATTGATTTAAACATATAAACAATTGATTTC-GAAG-A--AGTATTGCAAAATG
1 ACAATTGATTTAAACATATAAACAATCGA-TTCAGAAGAAGCAGTATT-CCACATG
* * ** * *
10278201 ATAGTCAATTTAAACGTATAAACAATCGATTCAAAAGAAGCAGTATTCCAACATG
1 ACAATTGATTTAAACATATAAACAATCGATTCAGAAGAAGCAGTATTCC-ACATG
*
10278256 GCAATTGATTTAAACATA
1 ACAATTGATTTAAACATA
10278274 AAAAAGAATT
Statistics
Matches: 97, Mismatches: 21, Indels: 20
0.70 0.15 0.14
Matches are distributed among these distances:
51 3 0.03
52 34 0.35
53 3 0.03
54 2 0.02
55 26 0.27
61 26 0.27
62 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.28
Consensus pattern (54 bp):
ACAATTGATTTAAACATATAAACAATCGATTCAGAAGAAGCAGTATTCCACATG
Found at i:10281927 original size:27 final size:27
Alignment explanation
Indices: 10281896--10282073 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10281886 TAAATTGTAC
10281896 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10281923 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10281949 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10281977 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10282005 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10282032 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10282059 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10282074 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10282010 original size:82 final size:81
Alignment explanation
Indices: 10281897--10282052 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10281887 AAATTGTACA
* *
10281897 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10281961 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
10281978 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10282043 TGCGAGTTGA
65 TGCGAATTGA
10282053 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10282064 original size:82 final size:81
Alignment explanation
Indices: 10281893--10282073 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10281883 GATTAAATTG
* *
10281893 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10281958 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10281974 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10282038 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10282056 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10282074 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10289990 original size:27 final size:27
Alignment explanation
Indices: 10289959--10290136 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10289949 TAAATTGTAC
10289959 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10289986 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10290012 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10290040 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10290068 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10290095 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10290122 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10290137 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10290073 original size:82 final size:81
Alignment explanation
Indices: 10289960--10290115 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10289950 AAATTGTACA
* *
10289960 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10290024 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
10290041 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10290106 TGCGAGTTGA
65 TGCGAATTGA
10290116 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10290127 original size:82 final size:81
Alignment explanation
Indices: 10289956--10290136 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10289946 GATTAAATTG
* *
10289956 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10290021 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10290037 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10290101 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10290119 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10290137 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10293793 original size:21 final size:20
Alignment explanation
Indices: 10293761--10293799 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10293751 TTTGCCATGA
*
10293761 TTAGATTCAATTTTTATATG
1 TTAGATTCAATTTGTATATG
*
10293781 TTAGCATTTAATTTGTATA
1 TTAG-ATTCAATTTGTATA
10293800 ATTGTTTATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (20 bp):
TTAGATTCAATTTGTATATG
Found at i:10296359 original size:121 final size:121
Alignment explanation
Indices: 10296033--10296385 Score: 471
Period size: 121 Copynumber: 2.9 Consensus size: 121
10296023 TGGGCTACAA
* * *
10296033 TTGGTCCTGGAAGAAATAATTTCGAGTTGACA-TTTCTAAGCAAATAGTATAAAATCTCTTCTAC
1 TTGGTCCTGGAAGAAATAATTTCGAGTTGA-AGTTTCTGAGCAAATAGTATAAAATCGCTTCTAG
* *
10296097 CAGGATCCTTTATGAGAAGAATTTGTGAAATCGAGCCCACGTGGACGCGCTTTTGCTATAG
65 CAGGATGCTTTATGAGAAGAATTTATGAAATCGAGCCCACGT----GCGCTTTTGCTATAG
* * * * *
10296158 TAGGTCCT-GAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTT-TAA
1 TTGGTCCTGGAAGAAATAATTTCGAGTTGAAGTTTCTGAGCAAATAGTAT-AAAATCGCTTCT-A
* * *
10296221 GCAGGATGCTATT-TGAGAAGAATTTCTGAAATCGTGCCCTCGTGCGCTTTTGCTATAG
64 GCAGGATGCT-TTATGAGAAGAATTTATGAAATCGAGCCCACGTGCGCTTTTGCTATAG
*
10296279 TTGGTCTTGGAAGAAATAATTTCGAGTTGAAGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
1 TTGGTCCTGGAAGAAATAATTTCGAGTTGAAGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
*
10296344 AGGATGCTTTATGAGAAGAATTTATGAAATCGCGCCCACGTG
66 AGGATGCTTTATGAGAAGAATTTATGAAATCGAGCCCACGTG
10296386 GACGCGCTTT
Statistics
Matches: 200, Mismatches: 21, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
120 2 0.01
121 69 0.34
122 39 0.19
124 37 0.19
125 51 0.25
126 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (121 bp):
TTGGTCCTGGAAGAAATAATTTCGAGTTGAAGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
AGGATGCTTTATGAGAAGAATTTATGAAATCGAGCCCACGTGCGCTTTTGCTATAG
Found at i:10299469 original size:174 final size:174
Alignment explanation
Indices: 10299179--10299527 Score: 698
Period size: 174 Copynumber: 2.0 Consensus size: 174
10299169 ACCCTAATCA
10299179 GAATAGTTGAATGTAAATAAATTATATTTTTTCAATTATTTATTGATAATTGTATTAATTGTTAC
1 GAATAGTTGAATGTAAATAAATTATATTTTTTCAATTATTTATTGATAATTGTATTAATTGTTAC
10299244 TAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAGTCAAAGCATTGTTTCAAATCTA
66 TAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAGTCAAAGCATTGTTTCAAATCTA
10299309 ACATTATGTGAATGTAAAAATATTAACTGATAATTGTATTAATG
131 ACATTATGTGAATGTAAAAATATTAACTGATAATTGTATTAATG
10299353 GAATAGTTGAATGTAAATAAATTATATTTTTTCAATTATTTATTGATAATTGTATTAATTGTTAC
1 GAATAGTTGAATGTAAATAAATTATATTTTTTCAATTATTTATTGATAATTGTATTAATTGTTAC
10299418 TAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAGTCAAAGCATTGTTTCAAATCTA
66 TAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAGTCAAAGCATTGTTTCAAATCTA
10299483 ACATTATGTGAATGTAAAAATATTAACTGATAATTGTATTAATG
131 ACATTATGTGAATGTAAAAATATTAACTGATAATTGTATTAATG
10299527 G
1 G
10299528 TTAGTAGAAT
Statistics
Matches: 175, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
174 175 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (174 bp):
GAATAGTTGAATGTAAATAAATTATATTTTTTCAATTATTTATTGATAATTGTATTAATTGTTAC
TAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAGTCAAAGCATTGTTTCAAATCTA
ACATTATGTGAATGTAAAAATATTAACTGATAATTGTATTAATG
Found at i:10299609 original size:22 final size:22
Alignment explanation
Indices: 10299584--10299876 Score: 263
Period size: 22 Copynumber: 13.7 Consensus size: 22
10299574 AAGTTAAGGT
*
10299584 TTTAGGGTTTATGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
**
10299606 TTTAGGGTTTATAGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
10299628 TTTAGGGTTT-GTGGTTTTTAAG
1 TTTAGGGTTTAG-GGTTTTTAAG
* * *
10299650 TTTAAGGTTTATGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
10299672 TTTAGGGTTT-GTGGTTTTTAAG
1 TTTAGGGTTTAG-GGTTTTTAAG
* *
10299694 TTAAGGG-TTAGGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
10299715 TTTAGGGGTT-GGG-GTTT---
1 TTTAGGGTTTAGGGTTTTTAAG
*
10299732 TTTA-AGTTTAGGGTTTTTAGA-
1 TTTAGGGTTTAGGGTTTTTA-AG
*
10299753 TTTAGGGTTTGGGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
*
10299775 TTTAGGGTTTAGGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
* * *
10299797 TCTAAGGTTTGGGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
10299819 TTAAGGG-TTAGCGTTTTTAA-
1 TTTAGGGTTTAGGGTTTTTAAG
*
10299839 TTTAAGGG-TTAGGGTTTCT-AG
1 TTT-AGGGTTTAGGGTTTTTAAG
*
10299860 TTTAAGGGTTTATGGTT
1 TTT-AGGGTTTAGGGTT
10299877 CGTCAATTAA
Statistics
Matches: 223, Mismatches: 33, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
16 3 0.01
17 7 0.03
18 3 0.01
20 6 0.03
21 57 0.26
22 147 0.66
ACGTcount: A:0.17, C:0.01, G:0.31, T:0.50
Consensus pattern (22 bp):
TTTAGGGTTTAGGGTTTTTAAG
Found at i:10299622 original size:29 final size:29
Alignment explanation
Indices: 10299567--10299622 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
10299557 TAAGGGTTAG
* *
10299567 GGTTTTAAAGTTAAGGTTTTAGGGTTTAT
1 GGTTTTAAAGTTAAGGGTTTAGAGTTTAT
* * *
10299596 GGTTTTTAAGTTTAGGGTTTATAGTTT
1 GGTTTTAAAGTTAAGGGTTTAGAGTTT
10299623 TTAAGTTTAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.27, T:0.52
Consensus pattern (29 bp):
GGTTTTAAAGTTAAGGGTTTAGAGTTTAT
Found at i:10299634 original size:66 final size:66
Alignment explanation
Indices: 10299563--10299702 Score: 167
Period size: 66 Copynumber: 2.1 Consensus size: 66
10299553 AACTTAAGGG
*
10299563 TTAGGGTTT-T-AAAGTTAAGGTTTTAGGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTA
1 TTAGGGTTTGTGAAAGTTAA-G-TTTAAGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTA
10299626 AGT
64 AGT
**** * * *
10299629 TTAGGGTTTGTGGTTTTTAAGTTTAAGGTTTATGGTTTTTAGGTTTAGGGTTTGTGGTTTTTAAG
1 TTAGGGTTTGTGAAAGTTAAGTTTAAGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTAAG
10299694 T
66 T
*
10299695 TAAGGGTT
1 TTAGGGTT
10299703 AGGGTTTTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
66 57 0.90
67 2 0.03
68 4 0.06
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (66 bp):
TTAGGGTTTGTGAAAGTTAAGTTTAAGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTAAG
T
Found at i:10299747 original size:16 final size:16
Alignment explanation
Indices: 10299726--10299762 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
10299716 TTAGGGGTTG
10299726 GGGTTTTTTA-AGTTTA
1 GGGTTTTTTAGA-TTTA
10299742 GGG-TTTTTAGATTTA
1 GGGTTTTTTAGATTTA
10299757 GGGTTT
1 GGGTTT
10299763 GGGGTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.16, C:0.00, G:0.30, T:0.54
Consensus pattern (16 bp):
GGGTTTTTTAGATTTA
Found at i:10299784 original size:125 final size:124
Alignment explanation
Indices: 10299619--10299855 Score: 359
Period size: 125 Copynumber: 1.9 Consensus size: 124
10299609 AGGGTTTATA
* * * * *
10299619 GTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTTAAGGTTTATGGTTTTTAGGTTTAGGGTTTGT
1 GTTTTTAAGTTTAGGGTTTGGGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGGTCTAAGGTTTGG
* * * *
10299684 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTTAGGGGTTGGGGTTTTTTAAGTTTAGG
66 GGTTTTTAAGTTAAGGGTTAGCGTTTTTA-ATTTAAGGGTTAGGGTTTTTTAAGTTTAGG
*
10299744 GTTTTT-AGATTTAGGGTTTGGGGTTTTTAAGTTTAGGGTTTAGGGTTTTTAGGTCTAAGGTTTG
1 GTTTTTAAG-TTTAGGGTTTGGGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGGTCTAAGGTTTG
10299808 GGGTTTTTAAGTTAAGGGTTAGCGTTTTTAATTTAAGGGTTAGGGTTT
65 GGGTTTTTAAGTTAAGGGTTAGCGTTTTTAATTTAAGGGTTAGGGTTT
10299856 CTAGTTTAAG
Statistics
Matches: 101, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
124 17 0.17
125 84 0.83
ACGTcount: A:0.17, C:0.01, G:0.32, T:0.50
Consensus pattern (124 bp):
GTTTTTAAGTTTAGGGTTTGGGGTTTTTAAGTTTAAGGTTTAGGGTTTTTAGGTCTAAGGTTTGG
GGTTTTTAAGTTAAGGGTTAGCGTTTTTAATTTAAGGGTTAGGGTTTTTTAAGTTTAGG
Found at i:10302382 original size:11 final size:11
Alignment explanation
Indices: 10302366--10302421 Score: 69
Period size: 11 Copynumber: 5.0 Consensus size: 11
10302356 ATTAAATATG
10302366 AATTTGAGAGA
1 AATTTGAGAGA
*
10302377 AATTTG-GAAGG
1 AATTTGAG-AGA
10302388 AATTTGAGAGA
1 AATTTGAGAGA
*
10302399 AAATTGAGAGGA
1 AATTTGAGA-GA
10302411 AATTTGAGAGA
1 AATTTGAGAGA
10302422 GGATTTGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
10 1 0.03
11 26 0.68
12 11 0.29
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:10302390 original size:22 final size:22
Alignment explanation
Indices: 10302365--10302421 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 22
10302355 GATTAAATAT
*
10302365 GAATTTGAGAGAAATTTG-GAAG
1 GAATTTGAGAGAAAATTGAG-AG
10302387 GAATTTGAGAGAAAATTGAGAG
1 GAATTTGAGAGAAAATTGAGAG
10302409 GAAATTTGAGAGA
1 G-AATTTGAGAGA
10302422 GGATTTGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
22 20 0.62
23 12 0.38
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.25
Consensus pattern (22 bp):
GAATTTGAGAGAAAATTGAGAG
Found at i:10302427 original size:12 final size:12
Alignment explanation
Indices: 10302365--10302428 Score: 57
Period size: 11 Copynumber: 5.6 Consensus size: 12
10302355 GATTAAATAT
10302365 GAATTTGAGAGA
1 GAATTTGAGAGA
10302377 -AATTTG-GA-A
1 GAATTTGAGAGA
10302386 GGAATTTGAGAGA
1 -GAATTTGAGAGA
*
10302399 -AAATTGAGAG-
1 GAATTTGAGAGA
10302409 GAAATTTGAGAGA
1 G-AATTTGAGAGA
*
10302422 GGATTTG
1 GAATTTG
10302429 TTTGTGAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
9 1 0.02
10 2 0.05
11 21 0.50
12 16 0.38
13 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.33, T:0.27
Consensus pattern (12 bp):
GAATTTGAGAGA
Found at i:10306081 original size:13 final size:13
Alignment explanation
Indices: 10306065--10306095 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
10306055 CAGAGCACTG
10306065 TTTCTCTTCCCGA
1 TTTCTCTTCCCGA
10306078 TTTCTCTTCCCGA
1 TTTCTCTTCCCGA
10306091 TTTCT
1 TTTCT
10306096 TGCACCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.35, G:0.06, T:0.52
Consensus pattern (13 bp):
TTTCTCTTCCCGA
Found at i:10310954 original size:15 final size:15
Alignment explanation
Indices: 10310931--10310967 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
10310921 ATTGTTAAGA
* *
10310931 ATTTTATTAAATTAT
1 ATTTAATTAAAATAT
10310946 ATTTAATTAAAATAT
1 ATTTAATTAAAATAT
10310961 ATTTAAT
1 ATTTAAT
10310968 AATAATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTAATTAAAATAT
Found at i:10311076 original size:18 final size:17
Alignment explanation
Indices: 10311048--10311082 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10311038 AATAATAAGA
*
10311048 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10311065 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10311083 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10311312 original size:44 final size:45
Alignment explanation
Indices: 10311247--10311337 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
10311237 ACCTCTATTC
* * *
10311247 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
10311291 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
10311336 CA
1 CA
10311338 GCGAATCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:10312401 original size:13 final size:13
Alignment explanation
Indices: 10312383--10312419 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
10312373 TATTTGTTTA
10312383 TATTCCCACCGAT
1 TATTCCCACCGAT
10312396 TATTCCCACCGAT
1 TATTCCCACCGAT
10312409 TATTCCCACCG
1 TATTCCCACCG
10312420 GCCGAATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.22, C:0.41, G:0.08, T:0.30
Consensus pattern (13 bp):
TATTCCCACCGAT
Found at i:10319302 original size:49 final size:49
Alignment explanation
Indices: 10319245--10319348 Score: 145
Period size: 49 Copynumber: 2.1 Consensus size: 49
10319235 TCATGTGTTA
* * ** * *
10319245 TAATTTTATACAGTGTTGAGTTTTTTATTCATGATATTGAACTCAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTCAATTT
*
10319294 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTCAATTT
10319343 TAATTT
1 TAATTT
10319349 GTTTTTTTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.51
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTCAATTT
Found at i:10320850 original size:26 final size:28
Alignment explanation
Indices: 10320708--10320859 Score: 88
Period size: 28 Copynumber: 5.6 Consensus size: 28
10320698 TAATAAAGTA
10320708 TATTA-TAAATTATATTTAA-TAATAAT
1 TATTATTAAATTATATTTAATTAATAAT
* *
10320734 TA-T-TTAAATTATATTTTA-TAGT-AT
1 TATTATTAAATTATATTTAATTAATAAT
* * * * *
10320758 TATATATTATGATTTTAGTAAATTCAT-AT
1 TAT-TATTA-AATTATATTTAATTAATAAT
* ** * * * *
10320787 AAGAATAAGAATTTTATTTAATTATTTAT
1 TATTATTA-AATTATATTTAATTAATAAT
10320816 TATTATTAAATTATATTTAA-TAATAAT
1 TATTATTAAATTATATTTAATTAATAAT
10320843 TATT-TTAAATTATATTT
1 TATTATTAAATTATATTT
10320860 TAGTATTATA
Statistics
Matches: 93, Mismatches: 26, Indels: 14
0.70 0.20 0.11
Matches are distributed among these distances:
24 4 0.04
25 17 0.18
26 16 0.17
27 12 0.13
28 33 0.35
29 11 0.12
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (28 bp):
TATTATTAAATTATATTTAATTAATAAT
Found at i:10320859 original size:54 final size:54
Alignment explanation
Indices: 10320796--10320991 Score: 144
Period size: 57 Copynumber: 3.4 Consensus size: 54
10320786 TAAGAATAAG
* * * *
10320796 AATTTTATTTAATTATTTATTATTATTAAATTATATTTAATAATAATTATTTTA
1 AATTATATTAAATTATATATTATTATTAAATTATATTTAATAACAATTATTTTA
* * ** *
10320850 AATTATATTTTAGTATTATATATTATGATTTTATTAGTAAATTTATATAAGAA-TATTTATTAA
1 AATTATA--TTA-AATTATATATTATTATTAAATTA-T--ATTTA-ATAACAATTA-TT-TT-A
* * *
10320913 CAATTTTATTAAATTATATATT-TTATTAAATTATATTTTATAACAATTATGTTA
1 -AATTATATTAAATTATATATTATTATTAAATTATATTTAATAACAATTATTTTA
* *
10320967 AAATATGATTAAATTATTTATTATT
1 AATTAT-ATTAAATTATATATTATT
10320992 TATATTAATA
Statistics
Matches: 109, Mismatches: 19, Indels: 27
0.70 0.12 0.17
Matches are distributed among these distances:
53 4 0.04
54 21 0.19
55 4 0.04
56 9 0.08
57 24 0.22
58 1 0.01
59 1 0.01
60 15 0.14
61 18 0.17
62 5 0.05
63 1 0.01
64 6 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (54 bp):
AATTATATTAAATTATATATTATTATTAAATTATATTTAATAACAATTATTTTA
Found at i:10320929 original size:108 final size:106
Alignment explanation
Indices: 10320708--10320923 Score: 291
Period size: 109 Copynumber: 2.0 Consensus size: 106
10320698 TAATAAAGTA
10320708 TATTA-TAAATTATATTTAATAATAATTATTTAAATTATATTTTATAGTATTATATATTATGATT
1 TATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTATAGTATTATATATTATGATT
* *
10320772 TTAGTAAATTCATATAAGAATAAGAATTTTATTTAATTATTTAT
66 TTAGTAAATTCATATAAGAAT---AATTTTATTAAAATATTTAT
10320816 TATTATTAAATTATATTTAATAATAATTATTTTAAATTATA-TTT-TAGTATTATATATTATGAT
1 TATTATTAAATTATATTTAATAATAATTA-TTTAAATTATATTTTATAGTATTATATATTATGA-
*
10320879 TTTATTAGTAAATTTATATAAGAAT-A-TTTATTAACAAT-TTTAT
64 -TT-TTAGTAAATTCATATAAGAATAATTTTATTAA-AATATTTAT
10320922 TA
1 TA
10320924 AATTATATAT
Statistics
Matches: 99, Mismatches: 3, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
106 14 0.14
107 3 0.03
108 23 0.23
109 26 0.26
110 13 0.13
111 20 0.20
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (106 bp):
TATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTATAGTATTATATATTATGATT
TTAGTAAATTCATATAAGAATAATTTTATTAAAATATTTAT
Found at i:10320953 original size:15 final size:17
Alignment explanation
Indices: 10320915--10320948 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10320905 TTTATTAACA
10320915 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
10320932 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
10320949 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:10320962 original size:16 final size:15
Alignment explanation
Indices: 10320915--10320962 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
10320905 TTTATTAACA
*
10320915 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
10320932 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
10320947 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
10320963 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:10321151 original size:39 final size:41
Alignment explanation
Indices: 10321095--10321200 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 41
10321085 TTTCCTTATG
* *
10321095 CTATTACACCTCTATTCCATTCAACCAAACACAAGAA-TAC
1 CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
10321135 C-ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTAC
1 CTATTACGCCTCTATT-C----CATTCAACCAAACAAAAGAATTAC
10321180 CTATTACGCCTCTATTCCATT
1 CTATTACGCCTCTATTCCATT
10321201 ACGCCTCTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
39 13 0.23
40 2 0.04
41 4 0.07
44 19 0.33
45 5 0.09
46 14 0.25
ACGTcount: A:0.36, C:0.31, G:0.04, T:0.29
Consensus pattern (41 bp):
CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
Found at i:10321175 original size:44 final size:46
Alignment explanation
Indices: 10321112--10321202 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
10321102 ACCTCTATTC
*
10321112 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
10321156 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
10321202 C
1 C
10321203 GCCTCTATTC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 19 0.43
45 4 0.09
46 21 0.48
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.26
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
Found at i:10321203 original size:16 final size:16
Alignment explanation
Indices: 10321182--10321218 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
10321172 AGAATTACCT
10321182 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
10321198 ATTACGCCTCTATTCT
1 ATTACGCCTCTATTCC
10321214 ATTAC
1 ATTAC
10321219 AGCGAACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:10322413 original size:18 final size:17
Alignment explanation
Indices: 10322381--10322419 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
10322371 ATTTTTATAA
10322381 TTTTTTAAAAATATTGAT
1 TTTTTTAAAAATATTG-T
**
10322399 TTTTTTAAATCTATTGT
1 TTTTTTAAAAATATTGT
10322416 TTTT
1 TTTT
10322420 ATGTTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTTTAAAAATATTGT
Found at i:10323240 original size:3 final size:3
Alignment explanation
Indices: 10323234--10323262 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10323224 ACTACTTCTT
10323234 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10323263 GAGAACTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10323644 original size:22 final size:22
Alignment explanation
Indices: 10323618--10323667 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
10323608 ACAAATCCTA
*
10323618 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCCAAAATCC
10323640 TCTCAATTTCCTTCCAAAATCC
1 TCTCAATTTCCTTCCAAAATCC
10323662 TCTCAA
1 TCTCAA
10323668 ACTCTCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAAATCC
Found at i:10323675 original size:30 final size:30
Alignment explanation
Indices: 10323639--10323697 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
10323629 TTCCAAAATT
10323639 CTCTCAATTTCCTTCCAAAATCCTCTCAAA
1 CTCTCAATTTCCTTCCAAAATCCTCTCAAA
*
10323669 CTCTCAATTTCCTTCCAAAATCCTTTCAA
1 CTCTCAATTTCCTTCCAAAATCCTCTCAA
10323698 TTTCCTTCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36
Consensus pattern (30 bp):
CTCTCAATTTCCTTCCAAAATCCTCTCAAA
Found at i:10323675 original size:52 final size:52
Alignment explanation
Indices: 10323618--10323720 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
10323608 ACAAATCCTA
*
10323618 TCTCAATTTCCTTCCAAAATTCTCTCAATTTCCTTCC-AAAATCCTCTCAAAC
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAAT-CTCTCAAAC
*
10323670 TCTCAATTTCCTTCCAAAATCCTTTCAATTTCCTTCCAAAAATCTCTCAAA
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTCAAA
10323721 TCCATATTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 43 0.90
53 5 0.10
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (52 bp):
TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTCAAAC
Found at i:10323719 original size:22 final size:22
Alignment explanation
Indices: 10323669--10323719 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
10323659 TCCTCTCAAA
10323669 CTCTCAATTTCCTTCCAAAATC
1 CTCTCAATTTCCTTCCAAAATC
*
10323691 CTTTCAATTTCCTTCCAAAAAT-
1 CTCTCAATTTCCTTCC-AAAATC
10323713 CTCTCAA
1 CTCTCAA
10323720 ATCCATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.37
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATC
Found at i:10323780 original size:10 final size:10
Alignment explanation
Indices: 10323753--10323816 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 10
10323743 CCTCAATTTC
*
10323753 ATTTTTTAAA
1 ATTTTTTTAA
**
10323763 ATAATTTTAA
1 ATTTTTTTAA
10323773 ATTTTTTT--
1 ATTTTTTTAA
10323781 ATTTTTTTAAA
1 ATTTTTTT-AA
**
10323792 ATAATTTTAA
1 ATTTTTTTAA
*
10323802 ATTTTTTTAT
1 ATTTTTTTAA
10323812 ATTTT
1 ATTTT
10323817 CATCAATGGC
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
8 8 0.20
10 27 0.66
11 6 0.15
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:10323786 original size:29 final size:29
Alignment explanation
Indices: 10323754--10323816 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
10323744 CTCAATTTCA
10323754 TTTTTTAAAATAATTTTAAATTTTTTTAT
1 TTTTTTAAAATAATTTTAAATTTTTTTAT
10323783 TTTTTTAAAATAATTTTAAATTTTTTTAT
1 TTTTTTAAAATAATTTTAAATTTTTTTAT
*
10323812 ATTTT
1 TTTTT
10323817 CATCAATGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTTTAAAATAATTTTAAATTTTTTTAT
Found at i:10324910 original size:7 final size:7
Alignment explanation
Indices: 10324898--10324936 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
10324888 AGTGGATTGA
10324898 TATTTAG
1 TATTTAG
10324905 TATTTAG
1 TATTTAG
10324912 TATTTAG
1 TATTTAG
*
10324919 TATTTTG
1 TATTTAG
*
10324926 TATTTTG
1 TATTTAG
10324933 TATT
1 TATT
10324937 ATGTATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.64
Consensus pattern (7 bp):
TATTTAG
Found at i:10324941 original size:7 final size:7
Alignment explanation
Indices: 10324898--10324942 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
10324888 AGTGGATTGA
*
10324898 TATTTAG
1 TATTTTG
*
10324905 TATTTAG
1 TATTTTG
*
10324912 TATTTAG
1 TATTTTG
10324919 TATTTTG
1 TATTTTG
10324926 TATTTTG
1 TATTTTG
*
10324933 TATTATG
1 TATTTTG
10324940 TAT
1 TAT
10324943 ATAACTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (7 bp):
TATTTTG
Found at i:10326111 original size:23 final size:24
Alignment explanation
Indices: 10326081--10326141 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 24
10326071 TAAAAACCTT
10326081 AAACCCTAACCTAATTTAATTAAAA
1 AAACCCTAACCTAATTTAATT-AAA
10326106 ACCCTAACCCTAACCTAATTTAATT-AA
1 A----AACCCTAACCTAATTTAATTAAA
10326133 AAACCCTAA
1 AAACCCTAA
10326142 AACCCTAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
23 8 0.25
25 1 0.03
27 3 0.09
29 20 0.62
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (24 bp):
AAACCCTAACCTAATTTAATTAAA
Found at i:10326115 original size:29 final size:30
Alignment explanation
Indices: 10326030--10326172 Score: 234
Period size: 30 Copynumber: 4.8 Consensus size: 30
10326020 TAAAAAAAAT
*
10326030 CCTAATTTAATTAAAAACCCTAAACACTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
10326060 CCTAATTTAATTAAAAACCTTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
10326090 CCTAATTTAATTAAAAACCCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
10326119 CCTAATTTAATTAAAAACCCTAAAACCCTAA
1 CCTAATTTAATTAAAAACCCT-AAACCCTAA
* *
10326150 CTTAATTTAATTAAAAACTCTAA
1 CCTAATTTAATTAAAAACCCTAA
10326173 CCATTAACAA
Statistics
Matches: 106, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
29 29 0.27
30 50 0.47
31 27 0.25
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (30 bp):
CCTAATTTAATTAAAAACCCTAAACCCTAA
Found at i:10343698 original size:123 final size:123
Alignment explanation
Indices: 10343420--10343698 Score: 488
Period size: 123 Copynumber: 2.3 Consensus size: 123
10343410 CCACGATGGT
*
10343420 GCGATTTTATACTATTTGCTTAGAAATGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
1 GCGATTTTATACTATTTGCTCAGAAATGTC-AAAAAAATTATTTCTTACATGACCAACTGTAGCG
10343485 AAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
65 AAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
*
10343544 GCGATTTTATACTATTTGCTCACAAATGTCAAAAAAATTATTTCTTACATGACCAACTGTAGCGA
1 GCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTATTTCTTACATGACCAACTGTAGCGA
* *
10343609 AATCGTGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
66 AATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
*
10343667 GCGATTTTATACTATTTGAC-CAGAAACGTCAA
1 GCGATTTTATACTATTTG-CTCAGAAATGTCAA
10343699 CTCGAAATAA
Statistics
Matches: 148, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
123 119 0.80
124 29 0.20
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (123 bp):
GCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTATTTCTTACATGACCAACTGTAGCGA
AATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
Found at i:10344657 original size:28 final size:27
Alignment explanation
Indices: 10344610--10344688 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
10344600 TGGAAGTCCA
*
10344610 AAACAAATAACAA-ACAAAACCCAAA-C
1 AAACAAA-AGCAAGACAAAACCCAAACC
* *
10344636 AGAACAAATGTTAAGACAAAACCCAAACC
1 A-AACAAAAG-CAAGACAAAACCCAAACC
*
10344665 AAACAAAAGCAAGACAACACCCAA
1 AAACAAAAGCAAGACAAAACCCAA
10344689 TAAAAGTCAG
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
26 1 0.02
27 21 0.49
28 19 0.44
29 2 0.05
ACGTcount: A:0.62, C:0.27, G:0.06, T:0.05
Consensus pattern (27 bp):
AAACAAAAGCAAGACAAAACCCAAACC
Found at i:10344752 original size:16 final size:16
Alignment explanation
Indices: 10344730--10344769 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
10344720 CGTTTGGTTC
*
10344730 ACTGTAATGGAATAGA
1 ACTGTAATGGAATAAA
*
10344746 GCTGTAATGGAATAAA
1 ACTGTAATGGAATAAA
10344762 ACTGTAAT
1 ACTGTAAT
10344770 TAGTAATTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (16 bp):
ACTGTAATGGAATAAA
Found at i:10345026 original size:58 final size:58
Alignment explanation
Indices: 10344947--10345070 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 58
10344937 TTTTAATGAG
* *
10344947 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACCATATT-TTAATATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAACAAAATTCTTAATATA
* * * *
10345005 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTCATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAATATA
10345063 ATTATTAT
1 ATTATTAT
10345071 ATGAATTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 22 0.37
58 37 0.63
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAATATA
Found at i:10348611 original size:23 final size:23
Alignment explanation
Indices: 10348572--10349934 Score: 434
Period size: 23 Copynumber: 60.0 Consensus size: 23
10348562 TTTCCAGCAC
* *
10348572 TTAAACACTTCAATTTACATCAA
1 TTAAACACCTCAATTTACAACAA
* *
10348595 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * *
10348618 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
10348641 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
10348664 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
** * * * *
10348687 TTCTACAACTCTA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
*
10348709 -TAAACATCTCAATTT-CAAGCAA
1 TTAAACACCTCAATTTACAA-CAA
* * * * *
10348731 CTAAACTA-TTCAATTTGCAGCAC
1 TTAAAC-ACCTCAATTTACAACAA
* * ** *
10348754 TTGAACACTTCAATTTACTTCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
10348777 TTGAGCACCTAAATTTACATCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
10348800 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
10348823 TTAAACACCTCAACTTCCAACAC
1 TTAAACACCTCAATTTACAACAA
* * * * *
10348846 TTTAACACCCCAAATAACAACAT
1 TTAAACACCTCAATTTACAACAA
* * *
10348869 TTATACACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
** * * * *
10348891 -TAAACATTTAAAATTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
10348913 CTAAACAACTCAATTTGCAACAC
1 TTAAACACCTCAATTTACAACAA
* * * * *
10348936 TTACACACTTTAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
10348959 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
10348982 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
10349005 TTAAACACTTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * * *
10349028 TTTAACATCTCAATTAACAACAT
1 TTAAACACCTCAATTTACAACAA
* * * *
10349051 TTATACACCTCAA-TAACAGCGA
1 TTAAACACCTCAATTTACAACAA
* **
10349073 -TAAACATCTCAATTT-CTGGCAA
1 TTAAACACCTCAATTTAC-AACAA
* * ** * * *
10349095 CTAAAAAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
10349118 TTAAACACTTCAACTTACATA-AT
1 TTAAACACCTCAATTTACA-ACAA
*
10349141 TTGAACACCTCAA-TTAGCAACAA
1 TTAAACACCTCAATTTA-CAACAA
* * * *
10349164 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
10349187 TTAAACACCTCAAATTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
10349210 TTGAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
10349233 TTATACACCTTAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * **
10349255 -TAAACATCTCAATTTCCAGGAA
1 TTAAACACCTCAATTTACAACAA
* ** ** * *
10349277 CTAAACAATTCAATTTTTATCAC
1 TTAAACACCTCAATTTACAACAA
* * *
10349300 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * * *
10349323 TTGAGCTCCTTAATTTATAACAA
1 TTAAACACCTCAATTTACAACAA
* * * * *
10349346 TTACACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
*
10349369 TTAAACACCTC-ATCTTACAACAC
1 TTAAACACCTCAAT-TTACAACAA
* *
10349392 TTTAACATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
*
10349414 TTAATACACCTCAA-TTACAACGA
1 TTAA-ACACCTCAATTTACAACAA
* **
10349437 -TAAACATCTCAATTT-CTGGCAA
1 TTAAACACCTCAATTTAC-AACAA
* ** * *
10349459 CTAAACAATTCAATTTGCAGA-AC
1 TTAAACACCTCAATTTACA-ACAA
* * * *
10349482 TTAAACACTTTAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
10349505 TTGAGCACCTCAGTTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
10349528 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
10349551 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
10349574 TTTACCATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
* *
10349596 TTAATACACCTCAA-TTACAGCGA
1 TTAA-ACACCTCAATTTACAACAA
* *
10349619 -TAAACATCTCAATTT-CTAGCAA
1 TTAAACACCTCAATTTAC-AACAA
* ** * *
10349641 CTAAACAATTCAATTTGCAGCAA
1 TTAAACACCTCAATTTACAACAA
* * *
10349664 TT--ACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
10349685 TTGAGCACATCAAATTACAACAA
1 TTAAACACCTCAATTTACAACAA
** * * *
10349708 TTAAACAATTCAATTGACAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
10349731 TTAAACAACTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
10349754 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * *
10349777 TTATACACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * **
10349799 -TAAACATCTCAATTTCCTGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** * * *
10349821 CTAAAAAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * * *
10349844 TTAAACACTTCAACTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
10349867 TTGAGCACCTCAA-TTAGCAATAA
1 TTAAACACCTCAATTTA-CAACAA
* * * *
10349890 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
*
10349913 TTAAACACCTCAAATTACAACA
1 TTAAACACCTCAATTTACAACA
10349935 CTTGAACATC
Statistics
Matches: 968, Mismatches: 322, Indels: 100
0.70 0.23 0.07
Matches are distributed among these distances:
21 83 0.09
22 105 0.11
23 757 0.78
24 23 0.02
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (23 bp):
TTAAACACCTCAATTTACAACAA
Found at i:10348887 original size:182 final size:182
Alignment explanation
Indices: 10348566--10349944 Score: 2127
Period size: 182 Copynumber: 7.6 Consensus size: 182
10348556 ACATAGTTTC
*
10348566 CAGCACTTAAACACTTCAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
10348631 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTCTACAAC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
10348696 TCTATTACAGCGATAAACATCTCAATTTCAAGCAACTAAACTATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
10348748 CAGCACTTGAACACTTCAATTTACTTCATTTGAGCACCTAAATTTACATCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
10348813 TTTATAGCATTTAAACACCTCAACTTCCAACACTTTAACACCCCAAATAACAACATTTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * *
10348878 TCAATTACAGCGATAAACATTTAAAATTCCAGCAACTAAACAACTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
10348930 CAACACTTACACACTTTAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
10348995 TTTATAGCATTTAAACACTTCAACTTACAACACTTTAACATCTCAATTAACAACATTTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* ** *
10349060 TCAATAACAGCGATAAACATCTCAATTTCTGGCAACTAAAAAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
10349112 CAGCACTTAAACACTTCAACTTACATAATTTGAACACCTCAA-TTAGCAACAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCA
* *
10349176 ATTTATAGCATTTAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACAC
65 ATTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* * *
10349241 CTTAATTACAGCGATAAACATCTCAATTTCCAGGAACTAAACAATTCAATTTT
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * * *
10349294 TATCACTTAAACACTTCAATTTACATCATTTGAGCTCCTTAATTTATAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
10349359 TTTATAGCATTTAAACACCTCATCTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* **
10349424 TCAATTACAACGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
10349476 CAGAACTTAAACACTTTAATTTACATCATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
10349541 TTTATAGCATTTAAACACCTCAACTTACAACACTTTACCATCCCAATTAACAACATTAATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
*
10349606 TCAATTACAGCGATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
10349658 CAGCAATT--ACACTTCAATTTACATCATTTGAGCACATCAAATTACAACAATTAAACAATTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
10349721 TTGACAGCATTTAAACAACTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
10349786 TCAATTACAGCGATAAACATCTCAATTTCCTGCAACTAAAAAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
10349838 CAGCACTTAAACACTTCAACTTACATCATTTGAGCACCTCAA-TTAGCAATAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCA
* *
10349902 ATTTATAGCATTTAAACACCTCAAATTACAACACTTGAACATC
65 ATTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATC
10349945 AGCAATTTAA
Statistics
Matches: 1080, Mismatches: 112, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
180 166 0.15
181 6 0.01
182 905 0.84
183 3 0.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (182 bp):
CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
Found at i:10349085 original size:113 final size:113
Alignment explanation
Indices: 10348967--10349177 Score: 257
Period size: 113 Copynumber: 1.9 Consensus size: 113
10348957 ATTTGAGCAC
* * * * *
10348967 CTCAATTTAC-AACAATTAAACACTTCAATTTATAGCATTTAAACACTTCAACTTACA-ACACTT
1 CTCAATTT-CTAACAACTAAAAAATTCAATTTACAGCACTTAAACACTTCAACTTACATA-A-TT
* * *
10349030 T-AACATCTCAATTAACAACATTTATACACCTCAATAACAGCGATAAACAT
63 TGAACACCTCAATTAACAACAATTAAACACCTCAATAACAGCGATAAACAT
** *
10349080 CTCAATTTCTGGCAACTAAAAAATTCAATTTGCAGCACTTAAACACTTCAACTTACATAATTTGA
1 CTCAATTTCTAACAACTAAAAAATTCAATTTACAGCACTTAAACACTTCAACTTACATAATTTGA
* *
10349145 ACACCTCAATTAGCAACAATTAAACACTTCAAT
66 ACACCTCAATTAACAACAATTAAACACCTCAAT
10349178 TTATAGCATT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
112 4 0.05
113 77 0.94
114 1 0.01
ACGTcount: A:0.42, C:0.24, G:0.04, T:0.30
Consensus pattern (113 bp):
CTCAATTTCTAACAACTAAAAAATTCAATTTACAGCACTTAAACACTTCAACTTACATAATTTGA
ACACCTCAATTAACAACAATTAAACACCTCAATAACAGCGATAAACAT
Found at i:10350559 original size:56 final size:56
Alignment explanation
Indices: 10350465--10351043 Score: 295
Period size: 57 Copynumber: 10.3 Consensus size: 56
10350455 TAAAATTTCT
* * *
10350465 TAACTTATATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACA
1 TAACTTATATAATATT-ACATAACTTATATAATATTAAGATAAAATATCGAATTACA
*
10350522 TAACTTATATAATATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACA
1 TAACTTATATAATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACA
* * * * * ** * *
10350578 TAACTTATACAATATTAAGATAA--AATATCGA-ATT-ACATAACTTATACAATATTAAGA
1 TAACTTATATAATATT-ACATAACTTATAT-AATATTAAGATAAAATAT-CGA-ATT-ACA
* ** *** * *
10350635 TAAAATT-T-CGA-ATTACATAACTTATATAATATTAAGATTACTTTTAT-AATATTAAGA
1 T-AACTTATATAATATTACATAACTTATATAATATTAAGA-TA-AAATATCGA-ATT-ACA
* ** *
10350692 TCAAATT-T-CGA-ATTACATAACTTATATAATATTAAGATTACTTAAATA---ATATTAAGA
1 T-AACTTATATAATATTACATAACTTATATAATATTAAGA-TA---AAATATCGA-ATT-ACA
* * * * ** ** *
10350749 TAAAATT-TCT-A-ATTACATAACTTACATAA-ATT-ACATAACTTATATAATGTTAAGA
1 T-AACTTATATAATATTACATAACTTATATAATATTAAGATAAAATATCGAA--TT-ACA
* * * * *
10350804 TAA--AATATCGA-ATTACATAACTTATACAATATTAAGGTAAAATTTCGAATTACA
1 TAACTTATAT-AATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACA
* * * * *
10350858 TAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTACA
1 TAACTTATATAATATT-ACATAACTTATATAATATTAAGATAAAATATCGAATTACA
* * *
10350915 TAACTTATATAATATTACGATTACTTATATAATATTAAGATAAAATTTCTAATTACA
1 TAACTTATATAATATTAC-ATAACTTATATAATATTAAGATAAAATATCGAATTACA
* * * * *
10350972 TAACTTACATAA-ATAACATAACTTATACAATGTTAAGATAATATATCGAATTACA
1 TAACTTATATAATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACA
*
10351027 TAACTTATACAATATTA
1 TAACTTATATAATATTA
10351044 AGGTAAAATT
Statistics
Matches: 423, Mismatches: 68, Indels: 63
0.76 0.12 0.11
Matches are distributed among these distances:
51 3 0.01
53 3 0.01
54 23 0.05
55 83 0.20
56 85 0.20
57 214 0.51
58 6 0.01
59 6 0.01
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.38
Consensus pattern (56 bp):
TAACTTATATAATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACA
Found at i:10350585 original size:37 final size:37
Alignment explanation
Indices: 10350535--10350672 Score: 240
Period size: 37 Copynumber: 3.7 Consensus size: 37
10350525 CTTATATAAT
* *
10350535 ATTACATAACTTATATAATGTTAAGATAAAATATCGA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGA
10350572 ATTACATAACTTATACAATATTAAGATAAAATATCGA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGA
*
10350609 ATTACATAACTTATACAATATTAAGATAAAATTTCGA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGA
*
10350646 ATTACATAACTTATATAATATTAAGAT
1 ATTACATAACTTATACAATATTAAGAT
10350673 TACTTTTATA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (37 bp):
ATTACATAACTTATACAATATTAAGATAAAATATCGA
Found at i:10350698 original size:57 final size:57
Alignment explanation
Indices: 10350617--10350839 Score: 333
Period size: 57 Copynumber: 3.9 Consensus size: 57
10350607 GAATTACATA
*
10350617 ACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* *
10350674 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * * * *
10350731 ACTTAAATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATT-ACATA
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * *
10350786 ACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAG
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAG
10350840 GTAAAATTTC
Statistics
Matches: 147, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
55 44 0.30
56 6 0.04
57 97 0.66
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (57 bp):
ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
Found at i:10350775 original size:9 final size:9
Alignment explanation
Indices: 10350761--10350795 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
10350751 AAATTTCTAA
10350761 TTACATAAC
1 TTACATAAC
*
10350770 TTACATAAA
1 TTACATAAC
10350779 TTACATAAC
1 TTACATAAC
*
10350788 TTATATAA
1 TTACATAA
10350796 TGTTAAGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:10350780 original size:18 final size:18
Alignment explanation
Indices: 10350759--10350795 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
10350749 TAAAATTTCT
10350759 AATTACATAACTTACATA
1 AATTACATAACTTACATA
*
10350777 AATTACATAACTTATATA
1 AATTACATAACTTACATA
10350795 A
1 A
10350796 TGTTAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTACATAACTTACATA
Found at i:10350818 original size:37 final size:37
Alignment explanation
Indices: 10350777--10350878 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
10350767 AACTTACATA
*
10350777 AATTACATAACTTATATAATGTTAAGATAAAATATCG
1 AATTACATAACTTATATAATATTAAGATAAAATATCG
* * *
10350814 AATTACATAACTTATACAATATTAAGGTAAAATTTCG
1 AATTACATAACTTATATAATATTAAGATAAAATATCG
10350851 AATTACATAACTTATATAATATTAAGAT
1 AATTACATAACTTATATAATATTAAGAT
10350879 TACTTTTATA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (37 bp):
AATTACATAACTTATATAATATTAAGATAAAATATCG
Found at i:10350827 original size:206 final size:206
Alignment explanation
Indices: 10350571--10351084 Score: 965
Period size: 206 Copynumber: 2.5 Consensus size: 206
10350561 TAAAATATCG
* *
10350571 AATTACATAACTTATACAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGAT
1 AATTACATAACTTATACAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGGT
10350636 AAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTC
66 AAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTC
10350701 GAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAAGATAAAATTTCTAATTACA
131 GAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAAGATAAAATTTCTAATTACA
10350766 TAACTTACATA
196 TAACTTACATA
*
10350777 AATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGGT
1 AATTACATAACTTATACAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGGT
10350842 AAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTC
66 AAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTC
* *
10350907 GAATTACATAACTTATATAATATTACGATTACTTATATAATATTAAGATAAAATTTCTAATTACA
131 GAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAAGATAAAATTTCTAATTACA
10350972 TAACTTACATA
196 TAACTTACATA
* *
10350983 AATAACATAACTTATACAATGTTAAGATAATATATCGAATTACATAACTTATACAATATTAAGGT
1 AATTACATAACTTATACAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGGT
10351048 AAAATTTCGAATTACATAACTTATATAATATTAAGAT
66 AAAATTTCGAATTACATAACTTATATAATATTAAGAT
10351085 AAAATTTCTA
Statistics
Matches: 300, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
206 300 1.00
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (206 bp):
AATTACATAACTTATACAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGGT
AAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTC
GAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAAGATAAAATTTCTAATTACA
TAACTTACATA
Found at i:10350868 original size:149 final size:151
Alignment explanation
Indices: 10350682--10350978 Score: 481
Period size: 149 Copynumber: 2.0 Consensus size: 151
10350672 TTACTTTTAT
*
10350682 AATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAA
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAA
* *
10350747 GATAAAATTTCTAATTACATAACTTACATAA-ATTAC-ATAACTTATATAATGTTAAGATAAAAT
66 GATAAAATTTCGAATTACATAACTTACATAATATTACGATAACTTATATAATATTAAGATAAAAT
10350810 ATCGAATTACATAACTTATAC
131 ATCGAATTACATAACTTATAC
* **
10350831 AATATTAAGGTAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAA
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAA
* * *
10350896 GATCAAATTTCGAATTACATAACTTATATAATATTACGATTACTTATATAATATTAAGATAAAAT
66 GATAAAATTTCGAATTACATAACTTACATAATATTACGATAACTTATATAATATTAAGATAAAAT
* *
10350961 TTCTAATTACATAACTTA
131 ATCGAATTACATAACTTA
10350979 CATAAATAAC
Statistics
Matches: 135, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
149 89 0.66
150 5 0.04
151 41 0.30
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.39
Consensus pattern (151 bp):
AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAATAATATTAA
GATAAAATTTCGAATTACATAACTTACATAATATTACGATAACTTATATAATATTAAGATAAAAT
ATCGAATTACATAACTTATAC
Found at i:10350904 original size:57 final size:57
Alignment explanation
Indices: 10350823--10351045 Score: 306
Period size: 57 Copynumber: 3.9 Consensus size: 57
10350813 GAATTACATA
* *
10350823 ACTTATACAATATTAAGGTAAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * *
10350880 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * * *
10350937 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-A-TAACATA
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * * * *
10350992 ACTTATACAATGTTAAGATAATATATCGAATTACATAACTTATACAATATTAAG
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAG
10351046 GTAAAATTTC
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
55 44 0.31
56 2 0.01
57 98 0.68
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (57 bp):
ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
Found at i:10350923 original size:94 final size:92
Alignment explanation
Indices: 10350739--10350931 Score: 278
Period size: 94 Copynumber: 2.1 Consensus size: 92
10350729 TTACTTAAAT
* *
10350739 AATATTAAGATAAAATTTCTAATTACATAACTTACATAAATTACATAACTTATATAATGTTAAGA
1 AATATTAAGATAAAATTTCGAATTACATAACTTACATAAATTACATAACTTATATAATATTAAGA
10350804 TAAAATATCGAATTACATAACTTATAC
66 TAAAATATCGAATTACATAACTTATAC
* * * * *
10350831 AATATTAAGGTAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAA
1 AATATTAAGATAAAATTTCGAATTACATAACTTACATAA-ATT-ACATAACTTATATAATATTAA
* * *
10350896 GATCAAATTTCGAATTACATAACTTATAT
64 GATAAAATATCGAATTACATAACTTATAC
10350925 AATATTA
1 AATATTA
10350932 CGATTACTTA
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
92 36 0.40
93 3 0.03
94 50 0.56
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.38
Consensus pattern (92 bp):
AATATTAAGATAAAATTTCGAATTACATAACTTACATAAATTACATAACTTATATAATATTAAGA
TAAAATATCGAATTACATAACTTATAC
Found at i:10351037 original size:37 final size:37
Alignment explanation
Indices: 10350987--10351107 Score: 188
Period size: 37 Copynumber: 3.3 Consensus size: 37
10350977 TACATAAATA
* * *
10350987 ACATAACTTATACAATGTTAAGATAATATATCGAATT
1 ACATAACTTATACAATATTAAGATAAAATTTCGAATT
*
10351024 ACATAACTTATACAATATTAAGGTAAAATTTCGAATT
1 ACATAACTTATACAATATTAAGATAAAATTTCGAATT
* *
10351061 ACATAACTTATATAATATTAAGATAAAATTTCTAATT
1 ACATAACTTATACAATATTAAGATAAAATTTCGAATT
10351098 ACATAACTTA
1 ACATAACTTA
10351108 CATAAATTAC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (37 bp):
ACATAACTTATACAATATTAAGATAAAATTTCGAATT
Found at i:10351110 original size:9 final size:9
Alignment explanation
Indices: 10351096--10351295 Score: 198
Period size: 9 Copynumber: 22.9 Consensus size: 9
10351086 AAATTTCTAA
10351096 TTACATAAC
1 TTACATAAC
*
10351105 TTACATAAA
1 TTACATAAC
10351114 TTACATAAC
1 TTACATAAC
10351123 TTACATAAC
1 TTACATAAC
*
10351132 TTACATAAA
1 TTACATAAC
*
10351141 TTAAATAAC
1 TTACATAAC
*
10351150 TTGCATAAC
1 TTACATAAC
*
10351159 TTAAATAAC
1 TTACATAAC
10351168 TTACATAA-
1 TTACATAAC
10351176 -TACATAACC
1 TTACATAA-C
*
10351185 TT-CCTAAC
1 TTACATAAC
* *
10351193 TTACATTAT
1 TTACATAAC
*
10351202 TTAGATAA-
1 TTACATAAC
*
10351210 -TACATAGC
1 TTACATAAC
*
10351218 CTACATAAC
1 TTACATAAC
10351227 TTACATAAC
1 TTACATAAC
*
10351236 TTACATAAA
1 TTACATAAC
*
10351245 TTAAATAAC
1 TTACATAAC
*
10351254 TTCCATAAC
1 TTACATAAC
*
10351263 TCACATAA-
1 TTACATAAC
*
10351271 -TACACAAC
1 TTACATAAC
10351279 TTACATAAC
1 TTACATAAC
10351288 TTACATAA
1 TTACATAA
10351296 TACATAAAAA
Statistics
Matches: 153, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
7 17 0.11
8 3 0.02
9 132 0.86
10 1 0.01
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (9 bp):
TTACATAAC
Found at i:10351116 original size:92 final size:90
Alignment explanation
Indices: 10350880--10351125 Score: 257
Period size: 92 Copynumber: 2.6 Consensus size: 90
10350870 TATTAAGATT
* * *
10350880 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACGATTACTTATAT
1 ACTTATATAATATTAAGAT-AAATTTC-AATTACATAACTTATATAA-ATTAC-ATAACTTATAC
*
10350945 AATATTAAGATAAAATTTCTAATTACATA
62 AATATTAAGATAAAATTTCGAATTACATA
* * * * *
10350974 ACTTACATAA-A-TAACATAACTTATACAATGTTAAGATAA--TATATCGAATTACATAACTTAT
1 ACTTATATAATATTAAGATAAATT-T-CAA--TT-ACATAACTTATAT-AAATTACATAACTTAT
*
10351035 ACAATATTAAGGTAAAATTTCGAATTACATA
60 ACAATATTAAGATAAAATTTCGAATTACATA
*
10351066 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAAATTACATAACTTA
1 ACTTATATAATATTAAGAT-AAATTTC-AATTACATAACTTATATAAATTACATAACTTA
10351126 CATAACTTAC
Statistics
Matches: 124, Mismatches: 16, Indels: 26
0.75 0.10 0.16
Matches are distributed among these distances:
91 9 0.07
92 69 0.56
93 18 0.15
94 19 0.15
95 9 0.07
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (90 bp):
ACTTATATAATATTAAGATAAATTTCAATTACATAACTTATATAAATTACATAACTTATACAATA
TTAAGATAAAATTTCGAATTACATA
Found at i:10351193 original size:34 final size:34
Alignment explanation
Indices: 10351117--10351331 Score: 157
Period size: 34 Copynumber: 6.5 Consensus size: 34
10351107 ACATAAATTA
*
10351117 CATAACTTACATAACTTACATAAATTAAATAA-CTT
1 CATAACTTACATAACTTACAT-AA-TACATAACCTT
*
10351152 GCATAACTTAAATAACTTACATAATACATAACCTT
1 -CATAACTTACATAACTTACATAATACATAACCTT
* * * * * *
10351187 CCTAACTTACATTATTTAGATAATACATAGCCTA
1 CATAACTTACATAACTTACATAATACATAACCTT
*
10351221 CATAACTTACATAACTTACATAA-A-TTAA----
1 CATAACTTACATAACTTACATAATACATAACCTT
* * *
10351249 -ATAACTTCCATAACTCACATAATACACAA-CTT
1 CATAACTTACATAACTTACATAATACATAACCTT
* *
10351281 ACATAACTTACATAA--TACATAA-AAATATATCATAT
1 -CATAACTTACATAACTTACATAATACATA-A-CCT-T
10351316 CATAACTTACATAACT
1 CATAACTTACATAACT
10351332 CATTTATAGT
Statistics
Matches: 141, Mismatches: 24, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
27 20 0.14
28 1 0.01
29 2 0.01
31 3 0.02
32 9 0.06
33 1 0.01
34 79 0.56
35 6 0.04
36 20 0.14
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (34 bp):
CATAACTTACATAACTTACATAATACATAACCTT
Found at i:10351231 original size:95 final size:95
Alignment explanation
Indices: 10351115--10351293 Score: 234
Period size: 95 Copynumber: 1.9 Consensus size: 95
10351105 TTACATAAAT
* * ** *
10351115 TACATAACTTACATAACTTACATAAATTAAATAACTTGCATAACTTAAATAACTTACATAATACA
1 TACATAACCTACATAACTTACATAAATTAAATAAATTAAATAACTTAAATAACTCACATAATACA
* *
10351180 TAACCTT-CCTAACTTACATTATTTAGATAA
66 CAA-CTTACATAACTTACATTATTTAGATAA
* * * **
10351210 TACATAGCCTACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACTCACATAATACA
1 TACATAACCTACATAACTTACATAAATTAAATAAATTAAATAACTTAAATAACTCACATAATACA
10351275 CAACTTACATAACTTACAT
66 CAACTTACATAACTTACAT
10351294 AATACATAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
94 3 0.04
95 68 0.96
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (95 bp):
TACATAACCTACATAACTTACATAAATTAAATAAATTAAATAACTTAAATAACTCACATAATACA
CAACTTACATAACTTACATTATTTAGATAA
Found at i:10351327 original size:104 final size:102
Alignment explanation
Indices: 10351106--10351331 Score: 251
Period size: 104 Copynumber: 2.2 Consensus size: 102
10351096 TTACATAACT
* * *
10351106 TACATAAATTACATAACTTACATAACTTACATAAATTAAATAACTTGCATAACTTAAATAACTTA
1 TACATAACTTACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACTCAAATAAC-TA
* * * **
10351171 CATAATACATAACCTTCCTAACTTACATTATTTAGATAA
65 CACAATACATAACCTTCATAAC-TACATAAAATAGATAA
* * *
10351210 TACATAGCCTACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACTCACATAA-TAC
1 TACATAACTTACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACTCAAATAACTAC
* *
10351274 ACAACTTACATAA-CTTACATAA-TACATAAAAATATATCA
66 ACAA--TACATAACCTT-CATAACTACAT-AAAATAGATAA
10351313 TATCATAACTTACATAACT
1 TA-CATAACTTACATAACT
10351332 CATTTATAGT
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
102 11 0.11
103 11 0.11
104 80 0.78
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.32
Consensus pattern (102 bp):
TACATAACTTACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACTCAAATAACTAC
ACAATACATAACCTTCATAACTACATAAAATAGATAA
Found at i:10352426 original size:348 final size:348
Alignment explanation
Indices: 10351789--10352484 Score: 1329
Period size: 348 Copynumber: 2.0 Consensus size: 348
10351779 TTGTGGCCTT
10351789 CTCAGATTGTAATATTGGTGGAAATGCTTTTACCGAACCGGGAAGTAGTGTACGTCATGAAGAGC
1 CTCAGATTGTAATATTGGTGGAAATGCTTTTACCGAACCGGGAAGTAGTGTACGTCATGAAGAGC
10351854 CGAATGGAGAAGCGGCGAAGTTCTACGCGCTACTTAATGACATGAACGAAGAACTGTATGAGGGA
66 CGAATGGAGAAGCGGCGAAGTTCTACGCGCTACTTAATGACATGAACGAAGAACTGTATGAGGGA
10351919 TCAAAATTTTCAAAAATGTCCTTCTGTGTTCGTCTTTTTCAATTAAAGTGTTTGGGAGGGTGGAC
131 TCAAAATTTTCAAAAATGTCCTTCTGTGTTCGTCTTTTTCAATTAAAGTGTTTGGGAGGGTGGAC
* * *
10351984 CGGAAACTCGTTGACAATGCTGTTAGAGTTTTTGAGAGAAATGTTTCCGTTTGCAAAAATCCCTC
196 CGGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCCCTC
10352049 GGTCATGCAAAGATATGAAAAAAATGATAAAAGATTTAGGCCTTAGGTATAACAAAATCCATAGT
261 GGTCATGCAAAGATATGAAAAAAATGATAAAAGATTTAGGCCTTAGGTATAACAAAATCCATAGT
10352114 TGCCCAAATGACTGCATGTTGTA
326 TGCCCAAATGACTGCATGTTGTA
10352137 CTCAGATTGTAATATTGGTGGAAATGCTTTTACCGAACCGGGAAGTAGTGTACGTCATGAAGAGC
1 CTCAGATTGTAATATTGGTGGAAATGCTTTTACCGAACCGGGAAGTAGTGTACGTCATGAAGAGC
10352202 CGAATGGAGAAGCGGCGAAGTTCTACGCGCTACTTAATGACATGAACGAAGAACTGTATGAGGGA
66 CGAATGGAGAAGCGGCGAAGTTCTACGCGCTACTTAATGACATGAACGAAGAACTGTATGAGGGA
*
10352267 TCAAAATTTTCAAAGATGTCCTTCTGTGTTCGTCTTTTTCAATTAAAGTGTTTGGGAGGGTGGAC
131 TCAAAATTTTCAAAAATGTCCTTCTGTGTTCGTCTTTTTCAATTAAAGTGTTTGGGAGGGTGGAC
10352332 CGGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCCCTC
196 CGGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCCCTC
* * *
10352397 GGTCATGCAAAGATATGAAGAAGATGATAAAAGATTTAGGCCTTGGGTATAACAAAATCCATAGT
261 GGTCATGCAAAGATATGAAAAAAATGATAAAAGATTTAGGCCTTAGGTATAACAAAATCCATAGT
10352462 TGCCCAAATGACTGCATGTTGTA
326 TGCCCAAATGACTGCATGTTGTA
10352485 TTGGGGCGAT
Statistics
Matches: 341, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
348 341 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (348 bp):
CTCAGATTGTAATATTGGTGGAAATGCTTTTACCGAACCGGGAAGTAGTGTACGTCATGAAGAGC
CGAATGGAGAAGCGGCGAAGTTCTACGCGCTACTTAATGACATGAACGAAGAACTGTATGAGGGA
TCAAAATTTTCAAAAATGTCCTTCTGTGTTCGTCTTTTTCAATTAAAGTGTTTGGGAGGGTGGAC
CGGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCCCTC
GGTCATGCAAAGATATGAAAAAAATGATAAAAGATTTAGGCCTTAGGTATAACAAAATCCATAGT
TGCCCAAATGACTGCATGTTGTA
Found at i:10352764 original size:360 final size:360
Alignment explanation
Indices: 10352329--10353041 Score: 1266
Period size: 360 Copynumber: 2.0 Consensus size: 360
10352319 TGGGAGGGTG
*
10352329 GACCGGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCC
1 GACCAGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCC
* *
10352394 CTCGGTCATGCAAAGATATGAAGAAGATGATAAAAGATTTAGGCCTTGGGTATAACAAAATCCAT
66 CTCAGTCATGCAAAGATATGAAGAAAATGATAAAAGATTTAGGCCTTGGGTATAACAAAATCCAT
10352459 AGTTGCCCAAATGACTGCATGTTGTATTGGGGCGATCGGAGAAACCAACAGTGCTGTCATGTATG
131 AGTTGCCCAAATGACTGCATGTTGTATTGGGGCGATCGGAGAAACCAACAGTGCTGTCATGTATG
* *
10352524 CGGCCATTC-CTGTTGGATAAGTAGAAACACAGAAGATGGGAACGATGATGAAAATGATGCACAG
196 CGGCCACTCTC-GTTGGATAAGTAGAAACACAGAAGATGGGAACGACGATGAAAATGATGCACAG
* * * *
10352588 TCACGGAAGAAGCCAGTCAAGATTTTGCAGTATTTTCCATTGATACCAAGGCTTCAAAGGCTTTT
260 CCAAGAAAGAAGCCAGTCAAGATTTTGCAGTATTTTCCACTGATACCAAGGCTTCAAAGGCTTTT
10352653 CATGTCGTCAAAGACAGCGGAGTCAATGAAATGGTA
325 CATGTCGTCAAAGACAGCGGAGTCAATGAAATGGTA
* * *
10352689 GACCAGAAACTCGTTGACAATGCTGTTAGAGTTTTTGAGAGAAATGTTTCCGTTTGCAAAAATCC
1 GACCAGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCC
10352754 CTCAGTCATGCAAAGATATGAAGAAAATGATAAAAGATTTAGGCCTTGGGTATAACAAAATCCAT
66 CTCAGTCATGCAAAGATATGAAGAAAATGATAAAAGATTTAGGCCTTGGGTATAACAAAATCCAT
10352819 AGTTGCCCAAATGACTGCATGTTGTATTGGGGCGATCGGAGAAACCAACAGTGCTGTCATGTATG
131 AGTTGCCCAAATGACTGCATGTTGTATTGGGGCGATCGGAGAAACCAACAGTGCTGTCATGTATG
10352884 CGGCCACTCTCGTTGGATAAGTAGAAACACAGAAGATGGGAACGACGATGAAAATGATGCACAGC
196 CGGCCACTCTCGTTGGATAAGTAGAAACACAGAAGATGGGAACGACGATGAAAATGATGCACAGC
* * *
10352949 CAAGAAAGAAGCCGGTCAAGATTTTGCGGTATTTTCCGCTGATACCAAGGCTTCAAAGGCTTTTC
261 CAAGAAAGAAGCCAGTCAAGATTTTGCAGTATTTTCCACTGATACCAAGGCTTCAAAGGCTTTTC
*
10353014 ATGTCGTCGAAGACAGCGGAGTCAATGA
326 ATGTCGTCAAAGACAGCGGAGTCAATGA
10353042 CGTGGCACCA
Statistics
Matches: 336, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
360 335 1.00
361 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (360 bp):
GACCAGAAACTCATTGACAATGCTGTTAGAGTTTTTGACAGAAATGTTCCCGTTTGCAAAAATCC
CTCAGTCATGCAAAGATATGAAGAAAATGATAAAAGATTTAGGCCTTGGGTATAACAAAATCCAT
AGTTGCCCAAATGACTGCATGTTGTATTGGGGCGATCGGAGAAACCAACAGTGCTGTCATGTATG
CGGCCACTCTCGTTGGATAAGTAGAAACACAGAAGATGGGAACGACGATGAAAATGATGCACAGC
CAAGAAAGAAGCCAGTCAAGATTTTGCAGTATTTTCCACTGATACCAAGGCTTCAAAGGCTTTTC
ATGTCGTCAAAGACAGCGGAGTCAATGAAATGGTA
Found at i:10357520 original size:12 final size:12
Alignment explanation
Indices: 10357503--10357527 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10357493 CGCTAAAGAA
10357503 CATGTTCTTTAG
1 CATGTTCTTTAG
10357515 CATGTTCTTTAG
1 CATGTTCTTTAG
10357527 C
1 C
10357528 GGTGCTTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (12 bp):
CATGTTCTTTAG
Found at i:10357618 original size:41 final size:42
Alignment explanation
Indices: 10357515--10357659 Score: 247
Period size: 42 Copynumber: 3.5 Consensus size: 42
10357505 TGTTCTTTAG
* *
10357515 CATGTTCTTTAGCGGTGCTTAGAAAAAAACGCTGCTAAAGAC
1 CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
*
10357557 CATGTTCTTTAGCGGCGCTTAGAAAAAAATGCCGCTAAAGAC
1 CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
10357599 CATGTTCTTTAGCGG-GCTTAGAAAAAAACGCCGCTAAAGAC
1 CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
*
10357640 CATGTTCTTTAGAGGCGCTT
1 CATGTTCTTTAGCGGCGCTT
10357660 GCTAAAGACC
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
41 39 0.40
42 58 0.60
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (42 bp):
CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
Found at i:10357664 original size:29 final size:29
Alignment explanation
Indices: 10357631--10357688 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
10357621 AAAAAACGCC
10357631 GCTAAAGACCATGTTCTTTAGAGGCGCTT
1 GCTAAAGACCATGTTCTTTAGAGGCGCTT
*
10357660 GCTAAAGACCATGTTCTTTAGCGGCGCTT
1 GCTAAAGACCATGTTCTTTAGAGGCGCTT
10357689 AAGAAAAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (29 bp):
GCTAAAGACCATGTTCTTTAGAGGCGCTT
Found at i:10357721 original size:71 final size:70
Alignment explanation
Indices: 10357590--10357727 Score: 224
Period size: 71 Copynumber: 2.0 Consensus size: 70
10357580 AAAAAATGCC
* *
10357590 GCTAAAGACCATGTTCTTTAGCGGGCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGAGG
1 GCTAAAGACCATGTTCTTTAGCGGGCTTAGAAAAAAACGCCGCTAAAGAACATGATCTTTAGAGG
10357655 CGCTT
66 CGCTT
*
10357660 GCTAAAGACCATGTTCTTTAGCGGCGCTTA-AGAAAAAACGCCGCTAAAGAACATGATCTTTAGC
1 GCTAAAGACCATGTTCTTTAGCGG-GCTTAGA-AAAAAACGCCGCTAAAGAACATGATCTTTAGA
10357724 GGCG
64 GGCG
10357728 TTTTTATCTA
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
70 25 0.40
71 38 0.60
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (70 bp):
GCTAAAGACCATGTTCTTTAGCGGGCTTAGAAAAAAACGCCGCTAAAGAACATGATCTTTAGAGG
CGCTT
Found at i:10357803 original size:40 final size:40
Alignment explanation
Indices: 10357698--10357816 Score: 159
Period size: 40 Copynumber: 2.9 Consensus size: 40
10357688 TAAGAAAAAA
*
10357698 CGCCGCTAAAGAACATGATCTTTAGC-GGCGTTTTTATCTAAG
1 CGCCGCTAAAGAACATGGTCTTTA-CTGGCGTTTTT-T-TAAG
* * *
10357740 TGCCTCTAAAGAACATGGCCTTTACTGGCGTTTTTTTAAG
1 CGCCGCTAAAGAACATGGTCTTTACTGGCGTTTTTTTAAG
*
10357780 CGCCGCTAAAGAACATGGTCTTTAGTGGCGTTTTTTT
1 CGCCGCTAAAGAACATGGTCTTTACTGGCGTTTTTTT
10357817 TTGTAAACGC
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
40 37 0.54
41 2 0.03
42 29 0.43
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (40 bp):
CGCCGCTAAAGAACATGGTCTTTACTGGCGTTTTTTTAAG
Found at i:10358931 original size:46 final size:46
Alignment explanation
Indices: 10358881--10360295 Score: 592
Period size: 46 Copynumber: 31.1 Consensus size: 46
10358871 ACTAAACAAT
* * * * *
10358881 TCAATTTCCAGCACTTAAACACTTT-AATTTACATCATTTGAGCACC
1 TCAATTTACAACACTTAAACA-TTTCAATTTACAACATTTAAACACC
*
10358927 TCAATTTACAACAGTTAAACATTTCAATTTACAACATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * *
10358973 TCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * **
10359019 TTAA-TTACAACGA--TAAACATCTCAATTTCCAACAATTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * *
10359063 TCAATTTGCAACGCTTAAACACTTCAATTTACATCATTTGAGCACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * *
10359109 TCAATTTACAATAATTAAACAATTCAATTTACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* ** * * * *
10359155 TCAACTTACAACACTTTCACA-TCCAAATTAACAACATTTATACAAC
1 TCAATTTACAACACTTAAACATTTC-AATTTACAACATTTAAACACC
* * * * ** **
10359201 TTAA-TTACAGCGA--TAAACATCTCAATTT-CTAGCAACTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTAC-AACATTTAAACACC
* * * * * * * * *
10359245 TCAATTTGCAGCAATT--ACACTTCAATGTACATC-GTTAGAGCACA
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTA-AACACC
* * * * *
10359289 TCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** ** ** * *
10359335 TCAACTTACAACCCTTTCACA-CCCAAATCAACAACATTTATACAAC
1 TCAATTTACAACACTTAAACATTTC-AATTTACAACATTTAAACACC
* * * * * ** **
10359381 TTAA-TTACAGCGA--TAAACATCTCAATTTCCAGCAACTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTACAACATTTAAACACC
* ** * *
10359425 TCAATTTGCAACACTTAAACATTTCAATTTACGTCATTTGAGCACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * *
10359471 TCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* ** ** * *
10359517 TCAACTTACAACACTTTCACATCCCAATTAACAACATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * ** **
10359563 TTAA-TTACAGCGA--TAAACATCTCAATTT-CTAGCAACTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTAC-AACATTTAAACACC
* * * * * * * *
10359607 TCAATGTGCAGCACTT--ACACTTCAATTTACATCATTTGAGCACA
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * *
10359651 TCAATTTACAACAATTAAACAATTCAATTGACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * * * ***
10359697 TCAACTTACAACACTTTAACATCCCAGTTAACAATATTTATTGACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * ** *
10359743 TTAA-TTACAGCGA--TAAACATCTCAATTTCCAGCAACTAAACACT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * *
10359787 TCAATTTGA-AGCACTTAAACACTTCAATTTACATCATTTGAGCACC
1 TCAATTT-ACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * * * * *
10359833 TCAATTTATAGCAATTAAACACTTCTATTTATAGCCTTTAACCACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** ** *
10359879 TCAACTTACAACACTTTAACATCCCAATAAACAACATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** ** ** **
10359925 TCAA-TTATAGCA-AGAAAC-TTGTCAATTT-CTGGCAACTAAACAAT
1 TCAATTTACAACACTTAAACATT-TCAATTTAC-AACATTTAAACACC
* * * *
10359969 TCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * * *
10360015 TCAACTTACAACACTTTAACATCCCAATTAACAAAATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * ** **
10360061 TCAA-TTACAACGA--TAAACATCTCAATTTTCAGCAAGTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * *
10360105 TTAATTTGCAGTACTTAAAACACTTCAATTTACAACATTTAAACACT
1 TCAATTTACAACACTT-AAACATTTCAATTTACAACATTTAAACACC
* ** * * * * * *
10360152 TCAATTTGCTGCACTTTAACACTTCAATTCACAACACTTAAATACT
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
** * * * * *
10360198 TCAATTTGTAACACTTTAACACTTCAATATACACCATTTAAACACT
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * * *
10360244 TCAATTTACAGCACTTTAACATCTCTATTAACAATATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
10360290 TCAATT
1 TCAATT
10360296 ACAGTAATAA
Statistics
Matches: 999, Mismatches: 322, Indels: 96
0.71 0.23 0.07
Matches are distributed among these distances:
43 6 0.01
44 211 0.21
45 93 0.09
46 648 0.65
47 41 0.04
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (46 bp):
TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
Done.