Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 36 of 185
Found at i:10645430 original size:145 final size:143
Alignment explanation
Indices: 10645220--10645506 Score: 393
Period size: 145 Copynumber: 2.0 Consensus size: 143
10645210 TCCCCTTTTT
*
10645220 TATTTTTTCAAAAGAGAGTTTAGATTTTAAAAATAAAAATATATTTTTTTTAGTCATTTTAAAGG
1 TATTTTTTCAAAAGAGAGTTTAGATTTTAAAAATAAAAATATATGTTTTTTAGTCATTTTAAAGG
10645285 -AAAGTTTAA-AATTTTAAAACAAAGTTTTGATTTTTTTTTTCAACTATTTCAAAATAAAAGCTT
66 AAAAGTTTAAGAATTTTAAAACAAAGTTTTGA--TTTTTTTTCAACTATTTCAAAATAAAA-CTT
10645348 TGATCTTTAAGAAAAA
128 TGATCTTTAAGAAAAA
* * *
10645364 TATTTTTTTAAAACGAGAAAGTTTAGATTTTTAAAAT-AAAA-ATCTGTTTTTTAGTCATTTTAA
1 TATTTTTTCAAAA-GAG--AGTTTAGATTTTAAAAATAAAAATATATGTTTTTTAGTCATTTTAA
** * ** *
10645427 AGGAAAAGTTTAAGTTTTTTAAAACAATGTTTTGATTTTTTTTCAACTATTTTGAAATAAAATTT
63 AGGAAAAGTTTAAGAATTTTAAAACAAAGTTTTGATTTTTTTTCAACTATTTCAAAATAAAACTT
*
10645492 TGATTTTTAAGAAAA
128 TGATCTTTAAGAAAA
10645507 GTAGTAATTT
Statistics
Matches: 127, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
144 28 0.22
145 51 0.40
146 13 0.10
147 35 0.28
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (143 bp):
TATTTTTTCAAAAGAGAGTTTAGATTTTAAAAATAAAAATATATGTTTTTTAGTCATTTTAAAGG
AAAAGTTTAAGAATTTTAAAACAAAGTTTTGATTTTTTTTCAACTATTTCAAAATAAAACTTTGA
TCTTTAAGAAAAA
Found at i:10645550 original size:145 final size:144
Alignment explanation
Indices: 10645238--10645538 Score: 371
Period size: 145 Copynumber: 2.1 Consensus size: 144
10645228 CAAAAGAGAG
* * *
10645238 TTTAGATTTTAAAAATAAAAATATATTTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAA
1 TTTAGATTTTCAAAAT-AAAA-ATCTGTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAA
10645303 ACAAAGTTTTGATTTTTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATATT
64 ACAAAGTTTTGA-TTTTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATATT
*
10645368 TTTTTAAAACGAGAAAG
128 TTTTTAAAACGAGAAAA
* **
10645385 TTTAGATTTTTAAAATAAAAATCTGTTTTTTAGTCATTTTAAAGGAAAAGTTTAAGTTTTTTAAA
1 TTTAGATTTTCAAAATAAAAATCTGTTTTTTAGTCATTTTAAAGG-AAAGTTTAA-AATTTTAAA
* ** * *
10645450 ACAATGTTTTGA-TTTTTTTTCAACTATTTTGAAATAAAA-TTTTGATTTTTAAGAAAAGTAGTA
64 ACAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAA--A-T-
10645513 ATTTTTTT-AAA-G-GAAAA
125 ATTTTTTTAAAACGAGAAAA
10645530 TTT-GATTTT
1 TTTAGATTTT
10645539 GCAAGAAAAA
Statistics
Matches: 137, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
144 22 0.16
145 55 0.40
146 15 0.11
147 37 0.27
148 8 0.06
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (144 bp):
TTTAGATTTTCAAAATAAAAATCTGTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAC
AAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATATTTTT
TTAAAACGAGAAAA
Found at i:10649957 original size:20 final size:20
Alignment explanation
Indices: 10649932--10649971 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
10649922 TTTTTTTTGG
10649932 ATCTTGCCAAATAT-TTGATA
1 ATCTTGCCAAA-ATCTTGATA
10649952 ATCTTGCCAAAATCTTGATA
1 ATCTTGCCAAAATCTTGATA
10649972 TCAACCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (20 bp):
ATCTTGCCAAAATCTTGATA
Found at i:10651151 original size:53 final size:53
Alignment explanation
Indices: 10651087--10651192 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
10651077 ACATGGACTC
*
10651087 GGCATTTGAAGGTCTCAGCTCAGATTATTTTCATTAAAATTATTTTAGACTTA
1 GGCATTCGAAGGTCTCAGCTCAGATTATTTTCATTAAAATTATTTTAGACTTA
10651140 GGCATTCGAAGGTCTCAGCTCAGATTATTTTCATTAAAATTATTTTAGACTTA
1 GGCATTCGAAGGTCTCAGCTCAGATTATTTTCATTAAAATTATTTTAGACTTA
10651193 AAATTTATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (53 bp):
GGCATTCGAAGGTCTCAGCTCAGATTATTTTCATTAAAATTATTTTAGACTTA
Found at i:10653560 original size:13 final size:13
Alignment explanation
Indices: 10653542--10653583 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
10653532 AGATCGTTCT
10653542 TAAATATTATCAC
1 TAAATATTATCAC
*
10653555 TAAATA--AT-TC
1 TAAATATTATCAC
10653565 TAAATATTATCAC
1 TAAATATTATCAC
10653578 TAAATA
1 TAAATA
10653584 ATTTGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:10653592 original size:23 final size:23
Alignment explanation
Indices: 10653542--10653586 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
10653532 AGATCGTTCT
10653542 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
10653565 TAAATATTATCACTAAATAATT
1 TAAATATTATCACTAAATAATT
10653587 TGAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:10656869 original size:17 final size:17
Alignment explanation
Indices: 10656847--10656880 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10656837 CACTAACATG
*
10656847 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
10656864 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
10656881 TATATTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:10657384 original size:18 final size:18
Alignment explanation
Indices: 10657351--10657387 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10657341 CTTCTTCAGC
10657351 AACAACTTCCTCTTCTGT
1 AACAACTTCCTCTTCTGT
* *
10657369 AACAACTTTCTTTTCTGT
1 AACAACTTCCTCTTCTGT
10657387 A
1 A
10657388 GCAGCAACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.27, G:0.05, T:0.43
Consensus pattern (18 bp):
AACAACTTCCTCTTCTGT
Found at i:10659728 original size:21 final size:21
Alignment explanation
Indices: 10659704--10659747 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
10659694 CCATAAAGCG
10659704 TCATCCAATCGGCAAGACCAA
1 TCATCCAATCGGCAAGACCAA
10659725 TCATCCAATCGGCAAGACCAA
1 TCATCCAATCGGCAAGACCAA
10659746 TC
1 TC
10659748 TTTCCTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.34, G:0.14, T:0.16
Consensus pattern (21 bp):
TCATCCAATCGGCAAGACCAA
Found at i:10664723 original size:23 final size:23
Alignment explanation
Indices: 10664694--10664815 Score: 165
Period size: 23 Copynumber: 5.3 Consensus size: 23
10664684 AATGTTATTA
10664694 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * * *
10664717 TTTAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
10664740 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* **
10664763 TTCAGTGGTAGCTAT-GGCTACGC
1 ATCAGTGGTAGCT-TCGGCTACAT
10664786 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
10664809 ATCAGTG
1 ATCAGTG
10664816 TGGCACTTAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
22 1 0.01
23 81 0.98
24 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:10664746 original size:46 final size:46
Alignment explanation
Indices: 10664694--10664815 Score: 190
Period size: 46 Copynumber: 2.7 Consensus size: 46
10664684 AATGTTATTA
* *
10664694 ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACAGCTACAC
** *
10664740 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTATGGCTACGC
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACAGCTACAC
*
10664786 ATCAGTGGTAGCTTCGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTG
10664816 TGGCACTTAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACAGCTACAC
Found at i:10664954 original size:23 final size:22
Alignment explanation
Indices: 10664911--10664957 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 22
10664901 ATGTAACGAT
10664911 TAAGTGTAATTGAATGATGAATA
1 TAAGTGTAATTGAAT-ATGAATA
10664934 TAAGTGTGGAATTGAAT-TGAATA
1 TAAGTGT--AATTGAATATGAATA
10664957 T
1 T
10664958 TGATCGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 14 0.64
25 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.36
Consensus pattern (22 bp):
TAAGTGTAATTGAATATGAATA
Found at i:10680736 original size:49 final size:49
Alignment explanation
Indices: 10680628--10680761 Score: 160
Period size: 49 Copynumber: 2.7 Consensus size: 49
10680618 ACATGCTTAT
* * * * * * *
10680628 CTTATCAAAACGGCTAAAAAACATAAAATATGTTCTCGCACTTAACACA
1 CTTATCAGAATGGCTGAAGAACATAAAATATGTTCACACACCTAACACA
*
10680677 CTTATGAGAATGGCTGAAGAACATAAAATATGTTCACACACCTAACACA
1 CTTATCAGAATGGCTGAAGAACATAAAATATGTTCACACACCTAACACA
* * * *
10680726 CTTATCAGAATGGTTGAGGAGCATAAGATATGTTCA
1 CTTATCAGAATGGCTGAAGAACATAAAATATGTTCA
10680762 AGCCCACCCT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 72 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (49 bp):
CTTATCAGAATGGCTGAAGAACATAAAATATGTTCACACACCTAACACA
Found at i:10681134 original size:31 final size:31
Alignment explanation
Indices: 10681044--10681126 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 31
10681034 GCACAGAGAC
*
10681044 TTATCATAGAGAGCTCACATAGAGAGCTTAT
1 TTATCACAGAGAGCTCACATAGAGAGCTTAT
* * *
10681075 TTATCACAAAGAGCTCGCATAGGGAGCTTAT
1 TTATCACAGAGAGCTCACATAGAGAGCTTAT
* *
10681106 TTATCACAGAGAACTCTCATA
1 TTATCACAGAGAGCTCACATA
10681127 AAAAGCTTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (31 bp):
TTATCACAGAGAGCTCACATAGAGAGCTTAT
Found at i:10683144 original size:57 final size:57
Alignment explanation
Indices: 10683056--10683169 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
10683046 CTAAATATGG
*
10683056 CCAGTGTTCTTAGATAACAGAATCCTAGATTTGGCAAGGGTAACTTTTTACCCTGAT
1 CCAGTGTTCTTAGATAACAGAATCCTAGATTTGGCAAGGCTAACTTTTTACCCTGAT
10683113 CCAGTGTTCTTAGATAACAGAATCCTAGATTTGGCAAGGCTAACTTTTTACCCTGAT
1 CCAGTGTTCTTAGATAACAGAATCCTAGATTTGGCAAGGCTAACTTTTTACCCTGAT
10683170 TCCCAAATGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (57 bp):
CCAGTGTTCTTAGATAACAGAATCCTAGATTTGGCAAGGCTAACTTTTTACCCTGAT
Found at i:10686612 original size:5 final size:5
Alignment explanation
Indices: 10686594--10686639 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
10686584 ATTGAAGAGG
*
10686594 TTTCT TTT-T TTTCT TTTCT TTTCT TTTTT TTTCCT TTT-T TTT-T TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT-CT TTTCT TTTCT TTT
10686640 TTTGTATCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
4 12 0.32
5 21 0.57
6 4 0.11
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (5 bp):
TTTCT
Found at i:10686613 original size:14 final size:13
Alignment explanation
Indices: 10686594--10686639 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 13
10686584 ATTGAAGAGG
10686594 TTTCTTTTTTTTCT
1 TTTCTTTTTTTT-T
10686608 TTTCTTTTCTTTTTT
1 TTTC-TTT-TTTTTT
10686623 TTTCCTTTTTTTTT
1 TTT-CTTTTTTTTT
10686637 TTT
1 TTT
10686640 TTTGTATCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 13 0.45
15 10 0.34
16 6 0.21
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTCTTTTTTTTT
Found at i:10686641 original size:10 final size:10
Alignment explanation
Indices: 10686594--10686642 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
10686584 ATTGAAGAGG
10686594 TTTC-TTTTT
1 TTTCTTTTTT
*
10686603 TTTCTTTTCT
1 TTTCTTTTTT
10686613 TTTCTTTTTT
1 TTTCTTTTTT
10686623 TTTCCTTTTTT
1 TTT-CTTTTTT
10686634 TTT-TTTTTT
1 TTTCTTTTTT
10686643 GTATCTAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
9 10 0.28
10 16 0.44
11 10 0.28
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:10687575 original size:24 final size:26
Alignment explanation
Indices: 10687554--10687601 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10687544 AGAAAAATAC
10687554 AAAAACA-TTTA-ATTTGTCAAATCT
1 AAAAACATTTTATATTTGTCAAATCT
*
10687578 AAAAACATTTTATATTTTTCAAAT
1 AAAAACATTTTATATTTGTCAAAT
10687602 TCATTACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 4 0.19
26 10 0.48
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (26 bp):
AAAAACATTTTATATTTGTCAAATCT
Found at i:10693967 original size:6 final size:6
Alignment explanation
Indices: 10693958--10693983 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10693948 ATTCCACTTA
10693958 CAGTTC CAGTTC CAGTTC CAGTTC CA
1 CAGTTC CAGTTC CAGTTC CAGTTC CA
10693984 ATTATAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (6 bp):
CAGTTC
Found at i:10698837 original size:40 final size:41
Alignment explanation
Indices: 10698781--10699189 Score: 370
Period size: 40 Copynumber: 10.2 Consensus size: 41
10698771 GGGCACGAAA
* * * *
10698781 GTGCAACCAGGTGTACCGAAGTACAAGCAATG-GCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* * * *
10698821 GTGCATTCAGGGGTACCAAAATACAAAC-ATGAGCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* * * *
10698861 GTGCATTCAAGGGTACCAAAGTACAAAC-AGGGGCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* * * * *
10698901 GTGCAATCAAGGATGCCAAAGTACAAA-TAGGAGCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* * * *
10698941 GTGCAATCAGGGGTGCTGAAGTACAAATAA-GAGCATGTAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* * *
10698981 GTGCAATCAGGGGTGCCGAAGTACAAATAA-GAGCACATAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* * * *
10699021 GTGTAATCAAGGGTACTGAAGTACAAAC-AGGGGCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
*
10699061 GTGCAATCAGGGGTACCGAAGTACAAAC-AGGGGCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* * * * * *
10699101 GTGCATTTAGGGGTACCAAAGTACAAA-ATGGGGCACATAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
* ** * * *
10699141 GTGCAATTAATGGTACCAAAGTACAAAC-AGGGGCACATAT
1 GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
*
10699181 GTACAATCA
1 GTGCAATCA
10699190 TTCAATAATT
Statistics
Matches: 319, Mismatches: 44, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
39 4 0.01
40 314 0.98
41 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (41 bp):
GTGCAATCAGGGGTACCGAAGTACAAACAAGGAGCACGTAT
Found at i:10698920 original size:80 final size:80
Alignment explanation
Indices: 10698793--10699189 Score: 427
Period size: 80 Copynumber: 5.0 Consensus size: 80
10698783 GCAACCAGGT
* ** * * *
10698793 GTACCGAAGTACAAGCAATGGCACGTATGTGCATTCAGGGGTACCAAAATACAAACATGAGCACG
1 GTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAACAGGAGCACG
*
10698858 TATGTGCATTCAAGG
66 TATGTGCAATCAAGG
* * * * *
10698873 GTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAGGATGCCAAAGTACAAATAGGAGCACG
1 GTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAACAGGAGCACG
*
10698938 TATGTGCAATCAGGG
66 TATGTGCAATCAAGG
* * * * * * * * * * *
10698953 GTGCTGAAGTACAAATAAGAGCATGTATGTGCAATCAGGGGTGCCGAAGTACAAATAAGAGCACA
1 GTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAACAGGAGCACG
*
10699018 TATGTGTAATCAAGG
66 TATGTGCAATCAAGG
* * *
10699033 GTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACG
1 GTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAACAGGAGCACG
* * *
10699098 TATGTGCATTTAGGG
66 TATGTGCAATCAAGG
* * * ** *
10699113 GTACCAAAGTACAAA-ATGGGGCACATATGTGCAATTAATGGTACCAAAGTACAAACAGGGGCAC
1 GTACCGAAGTACAAACA-GGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAACAGGAGCAC
* *
10699177 ATATGTACAATCA
65 GTATGTGCAATCA
10699190 TTCAATAATT
Statistics
Matches: 264, Mismatches: 52, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
79 1 0.00
80 263 1.00
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.19
Consensus pattern (80 bp):
GTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAACAGGAGCACG
TATGTGCAATCAAGG
Found at i:10698984 original size:120 final size:118
Alignment explanation
Indices: 10698793--10699189 Score: 461
Period size: 120 Copynumber: 3.3 Consensus size: 118
10698783 GCAACCAGGT
* * ** * * * *
10698793 GTACCGAAGTACAAGCAATGGCACGTATGTGCATTCAGGGGTACCAAAATACAAACATGAGCACG
1 GTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAAGAGCACG
* *
10698858 TATGTGCATTCAAGGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAG
66 TATGTGCATTCAGGGGTACCAAAGTACAAA-AGGGGCACATATGTGCAATCAAG
* * * * * * *
10698912 GATGCCAAAGTACAAATAGGAGCACGTATGTGCAATCAGGGGTGCTGAAGTACAAATAAGAGCAT
1 G-TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAAGAGCAC
* * * * * *
10698977 GTATGTGCAATCAGGGGTGCCGAAGTACAAATAAGAGCACATATGTGTAATCAAGG
65 GTATGTGCATTCAGGGGTACCAAAGTACAAA-AGGGGCACATATGTGCAATCAA-G
** * *
10699033 GTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACG
1 GTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAAGAGCACG
* *
10699098 TATGTGCATTTAGGGGTACCAAAGTACAAAATGGGGCACATATGTGCAATTAATG
66 TATGTGCATTCAGGGGTACCAAAGTACAAAA-GGGGCACATATGTGCAATCAA-G
* *
10699153 GTACCAAAGTACAAACAGGGGCACATATGTACAATCA
1 GTACCAAAGTACAAACAGGGGCACGTATGTGCAATCA
10699190 TTCAATAATT
Statistics
Matches: 227, Mismatches: 48, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
119 2 0.01
120 223 0.98
121 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.19
Consensus pattern (118 bp):
GTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAAGAGCACG
TATGTGCATTCAGGGGTACCAAAGTACAAAAGGGGCACATATGTGCAATCAAG
Found at i:10699073 original size:20 final size:20
Alignment explanation
Indices: 10699044--10699105 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
10699034 TACTGAAGTA
10699044 CAAACAGGGGCACGTATGTG
1 CAAACAGGGGCACGTATGTG
* * * *
10699064 CAATCAGGGGTACCG-AAGTA
1 CAAACAGGGGCA-CGTATGTG
10699084 CAAACAGGGGCACGTATGTG
1 CAAACAGGGGCACGTATGTG
10699104 CA
1 CA
10699106 TTTAGGGGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.32, T:0.15
Consensus pattern (20 bp):
CAAACAGGGGCACGTATGTG
Found at i:10699186 original size:20 final size:20
Alignment explanation
Indices: 10699041--10699186 Score: 55
Period size: 20 Copynumber: 7.3 Consensus size: 20
10699031 GGGTACTGAA
*
10699041 GTACAAACAGGGGCACGTAT
1 GTACAAACAGGGGCACATAT
* * * ** *
10699061 GTGCAATCAGGGGTACCGAA
1 GTACAAACAGGGGCACATAT
*
10699081 GTACAAACAGGGGCACGTAT
1 GTACAAACAGGGGCACATAT
* *** * *
10699101 GTGCATTTAGGGGTACCA-AA
1 GTACAAACAGGGGCA-CATAT
10699121 GTACAAA-ATGGGGCACATAT
1 GTACAAACA-GGGGCACATAT
* ** ** * *
10699141 GTGCAATTAATGGTACCA-AA
1 GTACAAACAGGGGCA-CATAT
10699161 GTACAAACAGGGGCACATAT
1 GTACAAACAGGGGCACATAT
10699181 GTACAA
1 GTACAA
10699187 TCATTCAATA
Statistics
Matches: 83, Mismatches: 37, Indels: 12
0.63 0.28 0.09
Matches are distributed among these distances:
19 5 0.06
20 74 0.89
21 4 0.05
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.18
Consensus pattern (20 bp):
GTACAAACAGGGGCACATAT
Found at i:10700985 original size:28 final size:28
Alignment explanation
Indices: 10700951--10701026 Score: 134
Period size: 28 Copynumber: 2.7 Consensus size: 28
10700941 AGAATTATTC
*
10700951 AATTTGCTCACACATGCTGTGATATTTG
1 AATTTGCTCACACAAGCTGTGATATTTG
*
10700979 AATTTGCTCACACAAGCTATGATATTTG
1 AATTTGCTCACACAAGCTGTGATATTTG
10701007 AATTTGCTCACACAAGCTGT
1 AATTTGCTCACACAAGCTGT
10701027 AGATCAGGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (28 bp):
AATTTGCTCACACAAGCTGTGATATTTG
Found at i:10704331 original size:19 final size:18
Alignment explanation
Indices: 10704307--10704362 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
10704297 CATACGCTAC
*
10704307 GATGCACCTCGTGTGCCA
1 GATGCACTTCGTGTGCCA
* *
10704325 TGATGCACTTCGTGCGCTA
1 -GATGCACTTCGTGTGCCA
10704344 GTATGCACTTCGTGTGCCA
1 G-ATGCACTTCGTGTGCCA
10704363 CGAGCCCTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 1 0.03
19 30 0.97
ACGTcount: A:0.16, C:0.29, G:0.27, T:0.29
Consensus pattern (18 bp):
GATGCACTTCGTGTGCCA
Found at i:10706874 original size:14 final size:15
Alignment explanation
Indices: 10706855--10706887 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
10706845 TCTGGTTTGA
*
10706855 GATTCCGG-TCCAAT
1 GATTCCGGCACCAAT
10706869 GATTCCGGCACCAAT
1 GATTCCGGCACCAAT
10706884 GATT
1 GATT
10706888 TGATCCGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (15 bp):
GATTCCGGCACCAAT
Found at i:10715889 original size:16 final size:16
Alignment explanation
Indices: 10715864--10715896 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10715854 TTATATTATT
*
10715864 TATATGTATTTTATAA
1 TATATATATTTTATAA
10715880 TATATATATTTTATAA
1 TATATATATTTTATAA
10715896 T
1 T
10715897 TTTTTCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TATATATATTTTATAA
Found at i:10716203 original size:21 final size:21
Alignment explanation
Indices: 10716165--10716205 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10716155 TGAATCATTA
**
10716165 TATATAAATATTTTATTATTC
1 TATATAAATATTCCATTATTC
*
10716186 TATATATATATTCCATTATT
1 TATATAAATATTCCATTATT
10716206 TATGTACTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (21 bp):
TATATAAATATTCCATTATTC
Found at i:10717579 original size:19 final size:20
Alignment explanation
Indices: 10717542--10717581 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
10717532 TCTTTTCGCA
* *
10717542 TTCATTTCATGCATTTGCAT
1 TTCATTGCATGCATATGCAT
10717562 TTCATTGCAT-CATATGCAT
1 TTCATTGCATGCATATGCAT
10717581 T
1 T
10717582 AAAAACCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (20 bp):
TTCATTGCATGCATATGCAT
Found at i:10720405 original size:17 final size:17
Alignment explanation
Indices: 10720383--10720421 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
10720373 TGGAGAGGCT
10720383 AAGGGCGCTTTAGACCA
1 AAGGGCGCTTTAGACCA
10720400 AAGGGCGCTTTAGACCA
1 AAGGGCGCTTTAGACCA
10720417 AAGGG
1 AAGGG
10720422 GATTTGAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.21, G:0.33, T:0.15
Consensus pattern (17 bp):
AAGGGCGCTTTAGACCA
Found at i:10721811 original size:44 final size:43
Alignment explanation
Indices: 10721757--10721974 Score: 220
Period size: 44 Copynumber: 5.0 Consensus size: 43
10721747 AAGGAAAAAT
* *
10721757 CAGATCTTGTCTTTATGTACTGGCGTGAAGTAGATCAAAGTCAA
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAG-AAA
* * * * *
10721801 CAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAGAAA
1 CAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGAAA
*
10721845 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAA
1 -CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAA
* * * * * * * *
10721889 TAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGGTCGAAGAAAA
1 CAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAG-AAA
* * *
10721934 CAGATCCTGTCTTCATGTACTAGCGTGAAGGAGATCAAAGA
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
10721975 TAGTAGGTCC
Statistics
Matches: 137, Mismatches: 33, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
43 19 0.14
44 64 0.47
45 54 0.39
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (43 bp):
CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAA
Found at i:10721850 original size:45 final size:44
Alignment explanation
Indices: 10721669--10721945 Score: 191
Period size: 44 Copynumber: 6.2 Consensus size: 44
10721659 AAGCAGCAGG
* * * * * * *
10721669 TCTTGTCTTCCTATATTGGTAGCGAAGTAGATCAAATATACAGA
1 TCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAGAAACAGA
* * * * * *
10721713 TCTCGCCTTCCC-ATACTGGTGGCGAAGCAGATCGAAGGAAAAATCAGA
1 TCTTGTC-TCCCTATACTGGTGGTGGAGTAGATC-AA--AGAAA-CAGA
*** * * * *
10721761 TCTTGTCTTTATGTACTGG-CGTGAAGTAGATCAAAGTCAACAGA
1 TCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAG-AAACAGA
10721805 TCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAGAAAGCAGA
1 TCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAGAAA-CAGA
* * * * * * *
10721850 TCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAAATAGA
1 TCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAGAAACAGA
* *
10721893 TCTTGTCTCCCTATACTGGTGGTGGAGTAGGTCGAAGAAAACAGA
1 TCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAG-AAACAGA
*
10721938 TCCTGTCT
1 TCTTGTCT
10721946 TCATGTACTA
Statistics
Matches: 179, Mismatches: 43, Indels: 21
0.74 0.18 0.09
Matches are distributed among these distances:
43 18 0.10
44 76 0.42
45 54 0.30
46 2 0.01
47 14 0.08
48 15 0.08
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
TCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAGAAACAGA
Found at i:10721931 original size:88 final size:88
Alignment explanation
Indices: 10721692--10722277 Score: 367
Period size: 88 Copynumber: 6.7 Consensus size: 88
10721682 TATTGGTAGC
* * * * * * *
10721692 GAAGTAGATCAAATATACAGATCTCGCCTTCCC-ATACTGGTGGCGAAGCAGATCGAAGGAAAAA
1 GAAGTAGATCAAAGAAACAGATCTTGTC-TCCCTATACTGGTGGTGGAGTAGATCGAA-G--AAA
* *
10721756 TCAGATCTTGTCTTTATGTACTGGCGT
62 GCAGATCTTGTCTTCATGTACTGGCGT
* *
10721783 GAAGTAGATCAAAGTCAACAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGATCAAAGAAAGCA
1 GAAGTAGATCAAAG-AAACAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGATCGAAGAAAGCA
*
10721848 GATCTTGTCTTCATGTATTGGCGT
65 GATCTTGTCTTCATGTACTGGCGT
* * *
10721872 GAAGTAGATCAAAGAAATAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGGTCGAAGAAAACAG
1 GAAGTAGATCAAAGAAACAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGATCGAAGAAAGCAG
* *
10721937 ATCCTGTCTTCATGTACTAGCGT
66 ATCTTGTCTTCATGTACTGGCGT
* ** * * * * * * * * * *
10721960 GAAGGAGATCAAAGATAGTAGGTCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAATATA-C-
1 GAAGTAGATCAAAGA-AACAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGATCGAAGAAAGCA
* * *
10722023 -ATC-T-TC-CCA--TACTGGTGGC
65 GATCTTGTCTTCATGTACTGG-CGT
* * * * * * * **
10722042 GAAGAAGATCGAGGAAAACAGATCTTATCTCCCTA-AGC-AGTAGTGGAGCAGATCGAAGATGGC
1 GAAGTAGATCAAAG-AAACAGATCTTGTCTCCCTATA-CTGGTGGTGGAGTAGATCGAAGAAAGC
* * ** * * *
10722105 GGATTTTACCTCCCTG-AGGTGGCAGT
64 AGATCTTGTCTTCATGTA-CTGGC-GT
* * ** * * * * * *
10722131 GGAGTATATTGAAG--CCAGTAATTTTATCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAGT
1 GAAGTAGATCAAAGAAACAG--ATCTTGTCTCCCTATACTGGTGGTGGAGTAGATCGAAGAAAGC
* *
10722194 AGATCTTTTCTTCACGTACTGGCGT
64 AGATCTTGTCTTCATGTACTGGCGT
*
10722219 GAAGTAGATCAAAGAAAGCAGATC-TGTCTTCCC-ATACTGGTGGTGAAGTAGATCGAAGA
1 GAAGTAGATCAAAGAAA-CAGATCTTGTC-TCCCTATACTGGTGGTGGAGTAGATCGAAGA
10722278 TACAAGTCTT
Statistics
Matches: 378, Mismatches: 92, Indels: 53
0.72 0.18 0.10
Matches are distributed among these distances:
81 22 0.06
82 26 0.07
83 3 0.01
84 4 0.01
85 2 0.01
86 7 0.02
87 2 0.01
88 134 0.35
89 126 0.33
90 1 0.00
91 21 0.06
92 30 0.08
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (88 bp):
GAAGTAGATCAAAGAAACAGATCTTGTCTCCCTATACTGGTGGTGGAGTAGATCGAAGAAAGCAG
ATCTTGTCTTCATGTACTGGCGT
Found at i:10722225 original size:44 final size:44
Alignment explanation
Indices: 10722163--10722277 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 44
10722153 TTTATCTCCC
* * * * *
10722163 CATACTGGTGGTGGAGTAGATTGAAGAAAGTAGATCTTTTCTTCA
1 CATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATC-TGTCTTCA
* * *
10722208 CGTACTGG-CGTGAAGTAGATCAAAGAAAGCAGATCTGTCTTCC
1 CATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATCTGTCTTCA
*
10722251 CATACTGGTGGTGAAGTAGATCGAAGA
1 CATACTGGTCGTGAAGTAGATCGAAGA
10722278 TACAAGTCTT
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
43 13 0.22
44 38 0.66
45 7 0.12
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (44 bp):
CATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATCTGTCTTCA
Found at i:10723784 original size:16 final size:16
Alignment explanation
Indices: 10723759--10723791 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10723749 TTATATTATT
*
10723759 TATATGTATTTTATAA
1 TATATATATTTTATAA
10723775 TATATATATTTTATAA
1 TATATATATTTTATAA
10723791 T
1 T
10723792 TTTTTCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TATATATATTTTATAA
Found at i:10724098 original size:21 final size:21
Alignment explanation
Indices: 10724060--10724100 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10724050 TGAATCATTA
**
10724060 TATATAAATATTTTATTATTC
1 TATATAAATATTCCATTATTC
*
10724081 TATATATATATTCCATTATT
1 TATATAAATATTCCATTATT
10724101 TATGTACTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (21 bp):
TATATAAATATTCCATTATTC
Found at i:10739347 original size:23 final size:23
Alignment explanation
Indices: 10739320--10739372 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
10739310 TATAAAAATA
*
10739320 ACTGTAATATCTCGAAAATTACT
1 ACTGTAATATCCCGAAAATTACT
10739343 ACTGTAATATCCCGAAAATTACT
1 ACTGTAATATCCCGAAAATTACT
*
10739366 ACAGTAA
1 ACTGTAA
10739373 GAAAGTAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (23 bp):
ACTGTAATATCCCGAAAATTACT
Found at i:10742779 original size:18 final size:18
Alignment explanation
Indices: 10742756--10742792 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10742746 ATGAAGCTGG
* *
10742756 TTTATCTCATTTTTCCAC
1 TTTATCTAATTTATCCAC
10742774 TTTATCTAATTTATCCAC
1 TTTATCTAATTTATCCAC
10742792 T
1 T
10742793 GCGTCGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATCTAATTTATCCAC
Found at i:10743365 original size:37 final size:37
Alignment explanation
Indices: 10743315--10743388 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
10743305 AACTGCGTGC
10743315 ATTGCGCGATGGATGTGAAGAAGTAGACCATTATCTT
1 ATTGCGCGATGGATGTGAAGAAGTAGACCATTATCTT
* *
10743352 ATTGCGTGATGGATGTGAAGAAGTAGATCATTATCTT
1 ATTGCGCGATGGATGTGAAGAAGTAGACCATTATCTT
10743389 GGTAATAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (37 bp):
ATTGCGCGATGGATGTGAAGAAGTAGACCATTATCTT
Found at i:10744546 original size:11 final size:11
Alignment explanation
Indices: 10744532--10744605 Score: 63
Period size: 11 Copynumber: 7.2 Consensus size: 11
10744522 AATAGATAAG
10744532 TAATATAAATA
1 TAATATAAATA
10744543 TAATATAAATA
1 TAATATAAATA
*
10744554 TAATATTCTAATA
1 TAATA-T-AAATA
*
10744567 TATTATAAATA
1 TAATATAAATA
10744578 -AA-AT--ATA
1 TAATATAAATA
10744585 TAA-ATAAAT-
1 TAATATAAATA
10744594 TAATA-AAATA
1 TAATATAAATA
10744604 TA
1 TA
10744606 TAAATAAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 9 0.17
10 6 0.12
11 20 0.38
12 2 0.04
13 8 0.15
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATATAAATA
Found at i:10744586 original size:13 final size:13
Alignment explanation
Indices: 10744570--10744613 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
10744560 TCTAATATAT
10744570 TATAAATAAAATA
1 TATAAATAAAATA
10744583 TATAAAT--AA-A
1 TATAAATAAAATA
10744593 T-T-AATAAAATA
1 TATAAATAAAATA
10744604 TATAAATAAA
1 TATAAATAAA
10744614 TTCTAATACT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
8 3 0.12
9 1 0.04
10 4 0.15
11 4 0.15
12 1 0.04
13 13 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TATAAATAAAATA
Found at i:10744590 original size:24 final size:24
Alignment explanation
Indices: 10744534--10744664 Score: 87
Period size: 24 Copynumber: 5.5 Consensus size: 24
10744524 TAGATAAGTA
* *
10744534 ATATAAATATAATATAAATATAAT
1 ATATAAATATATTATAAATAAAAT
*
10744558 AT-TCTAATATATTATAAATAAAAT
1 ATAT-AAATATATTATAAATAAAAT
*
10744582 ATATAAATA-A--ATTAATAAAAT
1 ATATAAATATATTATAAATAAAAT
* * *
10744603 ATATAAATAAATTCTAATACTAATAT
1 ATATAAATATATTATAA-A-TAAAAT
*
10744629 ATATTAGAATATA-TAT-AATAGAAT
1 ATA-TA-AATATATTATAAATAAAAT
10744653 -TGATAAATATAT
1 AT-ATAAATATAT
10744665 AATAGAATTA
Statistics
Matches: 84, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
21 19 0.23
22 7 0.08
23 5 0.06
24 32 0.38
25 3 0.04
26 9 0.11
27 4 0.05
28 5 0.06
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
ATATAAATATATTATAAATAAAAT
Found at i:10744600 original size:21 final size:21
Alignment explanation
Indices: 10744574--10744615 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
10744564 ATATATTATA
10744574 AATAAAATATATAAATAAATT
1 AATAAAATATATAAATAAATT
10744595 AATAAAATATATAAATAAATT
1 AATAAAATATATAAATAAATT
10744616 CTAATACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AATAAAATATATAAATAAATT
Found at i:10744665 original size:58 final size:57
Alignment explanation
Indices: 10744515--10744668 Score: 154
Period size: 57 Copynumber: 2.7 Consensus size: 57
10744505 GAAATAAATG
* * * * *
10744515 AAATAGAAATAGATAAGTAATATAAATATAATATA-AATATAATATTCTAATATATTAT
1 AAATA-AAATATATAAATAA-ATTAATAAAATATATAATATAATATTCTAATATAATAT
10744573 AAATAAAATATATAAATAAATTAATAAAATATATAA-ATAA-ATTCTAATACTAATAT
1 AAATAAAATATATAAATAAATTAATAAAATATATAATATAATATTCTAATA-TAATAT
* * *
10744629 ATATTAGAATATATATAATAGAATTGAT-AAATATATAATA
1 A-AATAAAATATATA-AATA-AATTAATAAAATATATAATA
10744669 GAATTAATAT
Statistics
Matches: 82, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
55 9 0.11
56 22 0.27
57 25 0.30
58 19 0.23
59 7 0.09
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (57 bp):
AAATAAAATATATAAATAAATTAATAAAATATATAATATAATATTCTAATATAATAT
Found at i:10744701 original size:7 final size:7
Alignment explanation
Indices: 10744691--10744729 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
10744681 TAACATCTAA
10744691 TATATAT
1 TATATAT
10744698 TATATAT
1 TATATAT
10744705 TATATAT
1 TATATAT
10744712 TATATAT
1 TATATAT
10744719 TATATAT
1 TATATAT
10744726 TATA
1 TATA
10744730 AGCTCAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATATAT
Found at i:10745802 original size:14 final size:14
Alignment explanation
Indices: 10745783--10745811 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10745773 CTTTTTACTT
10745783 TGTTATATAGATTA
1 TGTTATATAGATTA
10745797 TGTTATATAGATTA
1 TGTTATATAGATTA
10745811 T
1 T
10745812 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:10745844 original size:19 final size:19
Alignment explanation
Indices: 10745799--10745857 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
10745789 ATAGATTATG
*
10745799 TTATATAGATTATTATTTA
1 TTATATAGATTATTATTAA
*
10745818 TCTATATAGAGTATTATTAA
1 T-TATATAGATTATTATTAA
10745838 TTATATAGATTATTATTAA
1 TTATATAGATTATTATTAA
10745857 T
1 T
10745858 CCATAGATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 19 0.53
20 17 0.47
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.53
Consensus pattern (19 bp):
TTATATAGATTATTATTAA
Found at i:10745849 original size:16 final size:16
Alignment explanation
Indices: 10745785--10745852 Score: 50
Period size: 14 Copynumber: 3.9 Consensus size: 16
10745775 TTTTACTTTG
*
10745785 TTATATAGATTA-T-G
1 TTATATAGATTATTAA
10745799 TTATATAGATTATTATTTA
1 TTATATAGATTATTA---A
10745818 TCTATATAGAGTATTATTAA
1 T-TATAT--AG-ATTATTAA
10745838 TTATATAGATTATTA
1 TTATATAGATTATTA
10745853 TTAATCCATA
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
14 12 0.27
15 1 0.02
16 7 0.16
17 2 0.05
19 6 0.14
20 7 0.16
22 2 0.05
23 7 0.16
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.51
Consensus pattern (16 bp):
TTATATAGATTATTAA
Found at i:10745934 original size:21 final size:21
Alignment explanation
Indices: 10745910--10745950 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10745900 AGATTGATTA
* *
10745910 TATAGATATATCCAACTTTTC
1 TATAGAGATATACAACTTTTC
*
10745931 TATAGAGATATAGAACTTTT
1 TATAGAGATATACAACTTTT
10745951 ATCAGTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (21 bp):
TATAGAGATATACAACTTTTC
Found at i:10745982 original size:21 final size:21
Alignment explanation
Indices: 10745958--10745997 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10745948 TTTATCAGTA
* *
10745958 ATTCCATTTGATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
10745979 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
10745998 TTTAAATGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:10746591 original size:11 final size:11
Alignment explanation
Indices: 10746575--10746599 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10746565 GGGTCCCTTT
10746575 ATATACAATAA
1 ATATACAATAA
10746586 ATATACAATAA
1 ATATACAATAA
10746597 ATA
1 ATA
10746600 CAATAACCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:10747158 original size:40 final size:40
Alignment explanation
Indices: 10747022--10747167 Score: 204
Period size: 40 Copynumber: 3.7 Consensus size: 40
10747012 TAAAAGGTCG
* * *
10747022 AGCATTAGCGGCGCTTTT-GAAAAACGCTGCTATAGATCG
1 AGCATTAGCGGCGCTTTTCAAAAAACGCCGCTATAGATCA
*
10747061 AGCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCA
1 AGCATTAGCGGCGCTTTTCAAAAAACGCCGCTATAGATCA
* *
10747101 AGCATTAGCGGCGCTTTTCAAAAAACACCGCTATAGATAA
1 AGCATTAGCGGCGCTTTTCAAAAAACGCCGCTATAGATCA
** *
10747141 AGCATTAGCGGTACTTTTCAGAAAACG
1 AGCATTAGCGGCGCTTTTCAAAAAACG
10747168 ATGCAAAAAA
Statistics
Matches: 96, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 18 0.19
40 78 0.81
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCATTAGCGGCGCTTTTCAAAAAACGCCGCTATAGATCA
Found at i:10747260 original size:40 final size:37
Alignment explanation
Indices: 10747216--10747320 Score: 93
Period size: 40 Copynumber: 2.7 Consensus size: 37
10747206 AGCTTTAGTG
10747216 GCATTAGCGGCGCTTTTTGAAAAACACTGCAGTAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACT--A-TAGATCGA
* * **
10747256 GCATTAGAGGTGCCATTTGAAAAACGGCACTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAA---CACTATAGATCGA
* * *
10747296 GCATTAGCAGCTCTTTTTGGAAAAC
1 GCATTAGCGGCGCTTTTTGAAAAAC
10747321 GCCACAAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
37 1 0.02
40 45 0.88
41 1 0.02
43 4 0.08
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (37 bp):
GCATTAGCGGCGCTTTTTGAAAAACACTATAGATCGA
Found at i:10747600 original size:157 final size:154
Alignment explanation
Indices: 10747062--10747690 Score: 588
Period size: 154 Copynumber: 4.1 Consensus size: 154
10747052 TATAGATCGA
* * * * * *
10747062 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTT-TTCAAAAAA
1 GCATTAGCGGCGCTTTTTAAAAAACACCGCAATAGATCGAGAATTAGCGGCCCTTGTT-GAAAAA
* ** * ** ** * *
10747126 CACCGCTATAGATAAAGCATTAGCGGTACTTTTCAGAAA-ACGATGCAAAAAAGTTTAGCAAAAC
65 CGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGGAAACAC--CGCAAAAAAGTTGAGCAAAAC
**
10747190 -ACATCGTTTGTTGTTGAGCTTTAGTG
128 GACGCCGTTTGTTGTTGAGCTTTAGTG
* * * * * * *
10747216 GCATTAGCGGCGCTTTTTGAAAAACACTGCAGTAGATCGAGCATTAGAGGTGCCAT-TTGAAAAA
1 GCATTAGCGGCGCTTTTTAAAAAACACCGCAATAGATCGAGAATTAGCGG-CCCTTGTTGAAAAA
* * * * *
10747280 CGGCACTATAGATCGAGCATTAGCAGCTCTTTTTGGAAAACGCCACAAAAAAGTTGAGCAAAACG
65 CGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGG-AAACACCGCAAAAAAGTTGAGCAAAACG
* *
10747345 ACGCCGTTTATTGTTGAGCTTTAAT-
129 ACGCCGTTTGTTGTTGAGCTTTAGTG
* * * * * * * *
10747370 GTATTAGCGGCGCTTTTTAAAAAACGCCGCAATAAATCGAAAATTAGCAGCGCTTGTCGAAAAAT
1 GCATTAGCGGCGCTTTTTAAAAAACACCGCAATAGATCGAGAATTAGCGGCCCTTGTTGAAAAAC
* **
10747435 GCCGCTATAGATTGAGCATTAGTTGCGCTTTTTTGGAAACACCGCAAAAAAGTTGAGCAAAACGA
66 GCCGCTATAGATCGAGCATTAGCAGCGC-TTTTTGGAAACACCGCAAAAAAGTTGAGCAAAACGA
* * *
10747500 CGTCGTTTGTTTTTTTAGCTTTAGTG
130 CGCCGTTTG-TTGTTGAGCTTTAGTG
** * **
10747526 GCATTAGCGATGCTTTTTTTAAAAACACCATAATAGATCGAGAATTAGCGGCCCTTGTTGAAAAA
1 GCATTAGCGGCGC-TTTTTAAAAAACACCGCAATAGATCGAGAATTAGCGGCCCTTGTTGAAAAA
* * * * * *
10747591 CGCCGCTATAGGTCGAGCATTAGCGGCGCTTTTAGCAAAACACCG-TAAAAAGTTGAG-AAAACA
65 CGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTG-GAAACACCGCAAAAAAGTTGAGCAAAACG
* * *
10747654 ATGCCGTTTGTTGTTGAGATTTTGTG
129 ACGCCGTTTGTTGTTGAGCTTTAGTG
10747680 GCATTAGCGGC
1 GCATTAGCGGC
10747691 ATTTTTATCA
Statistics
Matches: 379, Mismatches: 86, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
153 2 0.01
154 216 0.57
155 60 0.16
156 27 0.07
157 74 0.20
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (154 bp):
GCATTAGCGGCGCTTTTTAAAAAACACCGCAATAGATCGAGAATTAGCGGCCCTTGTTGAAAAAC
GCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGGAAACACCGCAAAAAAGTTGAGCAAAACGAC
GCCGTTTGTTGTTGAGCTTTAGTG
Found at i:10747827 original size:14 final size:15
Alignment explanation
Indices: 10747810--10747853 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
10747800 TATTTTGGGA
10747810 TTAGAGTTTTG-AGT
1 TTAGAGTTTTGTAGT
*
10747824 TTAG-GTTTTGTGGT
1 TTAGAGTTTTGTAGT
10747838 TTAGAG-TTTGTAGT
1 TTAGAGTTTTGTAGT
10747852 TT
1 TT
10747854 GGGGTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 6 0.23
14 19 0.73
15 1 0.04
ACGTcount: A:0.16, C:0.00, G:0.30, T:0.55
Consensus pattern (15 bp):
TTAGAGTTTTGTAGT
Found at i:10748034 original size:7 final size:7
Alignment explanation
Indices: 10748024--10748217 Score: 108
Period size: 7 Copynumber: 27.6 Consensus size: 7
10748014 TTGTAATATA
10748024 TTTAGGG
1 TTTAGGG
10748031 TTTAGGG
1 TTTAGGG
*
10748038 TGTA-GG
1 TTTAGGG
**
10748044 TTTATAG
1 TTTAGGG
10748051 TTTAGGG
1 TTTAGGG
*
10748058 TTTAAGG
1 TTTAGGG
*
10748065 TTTAGGA
1 TTTAGGG
* *
10748072 TTTATGA
1 TTTAGGG
10748079 TTTAGGG
1 TTTAGGG
* *
10748086 TTAAGAG
1 TTTAGGG
*
10748093 TTTAGTG
1 TTTAGGG
*
10748100 TTTACGG
1 TTTAGGG
10748107 TTTAGGG
1 TTTAGGG
*
10748114 -GTA-GG
1 TTTAGGG
10748119 TTTATGGG
1 TTTA-GGG
*
10748127 -TTAGAG
1 TTTAGGG
*
10748133 CTTAGGG
1 TTTAGGG
*
10748140 TTTTATGG
1 -TTTAGGG
**
10748148 TTTAAAG
1 TTTAGGG
*
10748155 TTTAGAG
1 TTTAGGG
10748162 TTTAGGG
1 TTTAGGG
*
10748169 GTTAGGGG
1 TTTA-GGG
*
10748177 CTTAGGG
1 TTTAGGG
10748184 TTTAGGG
1 TTTAGGG
10748191 TTTTAGGGG
1 -TTTA-GGG
*
10748200 CTTAGGG
1 TTTAGGG
* *
10748207 CTTAGTG
1 TTTAGGG
10748214 TTTA
1 TTTA
10748218 TTGTTTGAAA
Statistics
Matches: 144, Mismatches: 34, Indels: 18
0.73 0.17 0.09
Matches are distributed among these distances:
5 2 0.01
6 11 0.08
7 108 0.75
8 20 0.14
9 3 0.02
ACGTcount: A:0.20, C:0.03, G:0.36, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:10748053 original size:20 final size:21
Alignment explanation
Indices: 10748030--10748068 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
10748020 TATATTTAGG
10748030 GTTTAGGGTGT-AGGTTTATA
1 GTTTAGGGTGTAAGGTTTATA
*
10748050 GTTTAGGGTTTAAGGTTTA
1 GTTTAGGGTGTAAGGTTTA
10748069 GGATTTATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (21 bp):
GTTTAGGGTGTAAGGTTTATA
Found at i:10748054 original size:27 final size:28
Alignment explanation
Indices: 10748020--10748087 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
10748010 TCCTTTGTAA
*
10748020 TATA-TTTAGGGTTTAGGGTGTAGG-TT
1 TATAGTTTAGGGTTTAAGGTGTAGGATT
*
10748046 TATAGTTTAGGGTTTAAGGTTTAGGATT
1 TATAGTTTAGGGTTTAAGGTGTAGGATT
10748074 TAT-GATTTAGGGTT
1 TATAG-TTTAGGGTT
10748088 AAGAGTTTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 4 0.11
27 19 0.51
28 14 0.38
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (28 bp):
TATAGTTTAGGGTTTAAGGTGTAGGATT
Found at i:10748147 original size:22 final size:22
Alignment explanation
Indices: 10748119--10748186 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
10748109 TAGGGGTAGG
10748119 TTTATGGGTTAGAGCTTAGGGT
1 TTTATGGGTTAGAGCTTAGGGT
* * * *
10748141 TTTATGGTTTAAAGTTTAGAG-
1 TTTATGGGTTAGAGCTTAGGGT
* *
10748162 TTTAGGGGTTAGGGGCTTAGGGT
1 TTTATGGGTTA-GAGCTTAGGGT
10748185 TT
1 TT
10748187 AGGGTTTTAG
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
21 9 0.26
22 23 0.68
23 2 0.06
ACGTcount: A:0.19, C:0.03, G:0.35, T:0.43
Consensus pattern (22 bp):
TTTATGGGTTAGAGCTTAGGGT
Found at i:10748183 original size:15 final size:15
Alignment explanation
Indices: 10748163--10748211 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
10748153 AGTTTAGAGT
10748163 TTAGGGGTTAGGGGC
1 TTAGGGGTTAGGGGC
* **
10748178 TTAGGGTTTAGGGTT
1 TTAGGGGTTAGGGGC
10748193 TTAGGGGCTTA-GGGC
1 TTAGGGG-TTAGGGGC
10748208 TTAG
1 TTAG
10748212 TGTTTATTGT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
15 24 0.89
16 3 0.11
ACGTcount: A:0.14, C:0.06, G:0.45, T:0.35
Consensus pattern (15 bp):
TTAGGGGTTAGGGGC
Found at i:10748196 original size:30 final size:29
Alignment explanation
Indices: 10748157--10748217 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
10748147 GTTTAAAGTT
10748157 TAGAGTTTAGGGG-TTAGGGGCTTAGGGTT
1 TAGAGTTTAGGGGCTTA-GGGCTTAGGGTT
* *
10748186 TAGGGTTTTAGGGGCTTAGGGCTTAGTGTT
1 TAGAG-TTTAGGGGCTTAGGGCTTAGGGTT
10748216 TA
1 TA
10748218 TTGTTTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 4 0.14
30 21 0.75
31 3 0.11
ACGTcount: A:0.16, C:0.05, G:0.41, T:0.38
Consensus pattern (29 bp):
TAGAGTTTAGGGGCTTAGGGCTTAGGGTT
Found at i:10748536 original size:40 final size:40
Alignment explanation
Indices: 10748464--10748540 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
10748454 GTTTTTAGTG
* * *
10748464 GCATTAGCGACGCTAGGTGAAAAATGCCGCAAAAGGTTGA
1 GCATTAGAGACGCTAGGAGAAAAACGCCGCAAAAGGTTGA
* **
10748504 GCATTAGAGGCGCTAGGAGAAAAACGGTGCAAAAGGT
1 GCATTAGAGACGCTAGGAGAAAAACGCCGCAAAAGGT
10748541 CATTTTGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (40 bp):
GCATTAGAGACGCTAGGAGAAAAACGCCGCAAAAGGTTGA
Found at i:10750439 original size:9 final size:9
Alignment explanation
Indices: 10750427--10750461 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
10750417 AAATATATAT
10750427 CATAACTTA
1 CATAACTTA
10750436 CATAACTTA
1 CATAACTTA
*
10750445 CATAATTTA
1 CATAACTTA
10750454 CATAACTT
1 CATAACTT
10750462 TAAAGAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:10750528 original size:9 final size:9
Alignment explanation
Indices: 10750516--10750654 Score: 101
Period size: 9 Copynumber: 15.8 Consensus size: 9
10750506 TATATCATAT
*
10750516 CATAACTTG
1 CATAACTTA
*
10750525 CATAACTCA
1 CATAACTTA
*
10750534 CATAACATA
1 CATAACTTA
10750543 CATAACTTA
1 CATAACTTA
10750552 CATAACTTA
1 CATAACTTA
10750561 CATAACTTA
1 CATAACTTA
10750570 -ATAACTTA
1 CATAACTTA
*
10750578 TAT-A-TATA
1 CATAACT-TA
* * *
10750586 TATATCATA
1 CATAACTTA
10750595 TCATAACTTA
1 -CATAACTTA
*
10750605 CATAACTCA
1 CATAACTTA
10750614 CATAA--TA
1 CATAACTTA
*
10750621 CATAA-ATA
1 CATAACTTA
* * *
10750629 TATATCATA
1 CATAACTTA
10750638 TCATAACTTA
1 -CATAACTTA
10750648 CATAACT
1 CATAACT
10750655 CAATTATACT
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
7 7 0.07
8 19 0.18
9 67 0.64
10 12 0.11
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:10750539 original size:18 final size:18
Alignment explanation
Indices: 10750489--10750654 Score: 103
Period size: 18 Copynumber: 9.3 Consensus size: 18
10750479 CTTTGGATCT
*
10750489 TAACTTA-ATAACTTATA
1 TAACTTACATAACTTACA
* *
10750506 TATATCATATCATAACTTGCA
1 TA-A-CTTA-CATAACTTACA
* *
10750527 TAACTCACATAACATACA
1 TAACTTACATAACTTACA
10750545 TAACTTACATAACTTACA
1 TAACTTACATAACTTACA
*
10750563 TAACTTA-ATAACTTATA
1 TAACTTACATAACTTACA
* * *
10750580 T-A-TATATATATCATATCA
1 TAACT-TACATAACTTA-CA
*
10750598 TAACTTACATAACTCACA
1 TAACTTACATAACTTACA
* *
10750616 TAA--TACATAA-ATATA
1 TAACTTACATAACTTACA
* *
10750631 TATCATATCATAACTTACA
1 TAACTTA-CATAACTTACA
10750650 TAACT
1 TAACT
10750655 CAATTATACT
Statistics
Matches: 111, Mismatches: 25, Indels: 24
0.69 0.16 0.15
Matches are distributed among these distances:
15 5 0.05
16 10 0.09
17 20 0.18
18 45 0.41
19 19 0.17
20 2 0.02
21 10 0.09
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.36
Consensus pattern (18 bp):
TAACTTACATAACTTACA
Found at i:10750641 original size:43 final size:43
Alignment explanation
Indices: 10750526--10750658 Score: 162
Period size: 43 Copynumber: 3.0 Consensus size: 43
10750516 CATAACTTGC
* * * *
10750526 ATAACTCACATAACATACATAACTTA-CATAACTTACATAACTTA
1 ATAACT-ACATAA-ATATATATCATATCATAACTTACATAACTCA
* *
10750570 ATAACTTATATATATATATATCATATCATAACTTACATAACTCA
1 ATAAC-TACATAAATATATATCATATCATAACTTACATAACTCA
10750614 CATAA-TACATAAATATATATCATATCATAACTTACATAACTCA
1 -ATAACTACATAAATATATATCATATCATAACTTACATAACTCA
10750657 AT
1 AT
10750659 TATACTTATA
Statistics
Matches: 78, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
42 2 0.03
43 45 0.58
44 26 0.33
45 5 0.06
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (43 bp):
ATAACTACATAAATATATATCATATCATAACTTACATAACTCA
Found at i:10753324 original size:44 final size:43
Alignment explanation
Indices: 10753224--10753392 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
10753214 ATTTTTTAAT
* * * **
10753224 AAGTGCCGTTAAAGAACA-GTACTTTTAGCGGAATTTGTGATAA
1 AAGTGCCGCTAAAGATCATGTTC-TTTAGCGGCGTTTGTGATAA
* *
10753267 AAGTGCCGCTAAAGATCATGTTTTTTAGCGGCGTTTGTGAAAAA
1 AAGTGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTG-ATAA
* * * *
10753311 AAGTGCCGCTAAAGGTGATGCTCTTTAGTGGCGTTTGTGATAA
1 AAGTGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGATAA
* * * *
10753354 AAGCGTCGTTAAAGGTCATGTTCTTTAGCGGCGTTTGTG
1 AAGTGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTG
10753393 GGTAAAACGT
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
43 66 0.63
44 39 0.37
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (43 bp):
AAGTGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGATAA
Found at i:10760037 original size:10 final size:10
Alignment explanation
Indices: 10760024--10760071 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
10760014 AAAAACTTCA
10760024 AAAAAAAAAG
1 AAAAAAAAAG
10760034 AAAAAAAAAG
1 AAAAAAAAAG
**
10760044 AAAAAAATTG
1 AAAAAAAAAG
*
10760054 AAAAAAAATTG
1 AAAAAAAA-AG
10760065 AAAAAAA
1 AAAAAAA
10760072 GGTCCAGATG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
10 25 0.74
11 9 0.26
ACGTcount: A:0.83, C:0.00, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:10760058 original size:11 final size:11
Alignment explanation
Indices: 10760023--10760071 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
10760013 TAAAAACTTC
*
10760023 AAAAAAAAAAG
1 AAAAAAAATAG
10760034 AAAAAAAA-AG
1 AAAAAAAATAG
*
10760044 -AAAAAAATTG
1 AAAAAAAATAG
*
10760054 AAAAAAAATTG
1 AAAAAAAATAG
10760065 AAAAAAA
1 AAAAAAA
10760072 GGTCCAGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
9 7 0.20
10 3 0.09
11 25 0.71
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAAAAATAG
Found at i:10761246 original size:83 final size:83
Alignment explanation
Indices: 10761069--10761278 Score: 232
Period size: 83 Copynumber: 2.6 Consensus size: 83
10761059 ATTGAATGAC
* * * * *
10761069 TAATT-TATTTTGGGATTTATTCCCGCCGTTTAACAA-AATTTATTTGATTTTATTTTGTTTTCA
1 TAATTCTATTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATATTATTTTGTTTCCA
* * *
10761132 AATTATAATTAAATTAAA
66 AATGAAAATTAAATCAAA
* * * *
10761150 TAAAATCTGTTTCGGGATTTATTCTCGCCGTTTAACAAGATTTTATTCGATATTGTTTTGTTTCC
1 T-AATTCTATTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATATTATTTTGTTTCC
10761215 AAA-GAAAGACTT-AATCAAA
65 AAATGAAA-A-TTAAATCAAA
* *
10761234 TAATTCTATTTCGGGATTTATTCCCGTCGTTTAA-TAGATTTTATT
1 TAATTCTATTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATT
10761279 TTGATTTAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
81 1 0.01
82 13 0.12
83 59 0.55
84 32 0.30
85 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.47
Consensus pattern (83 bp):
TAATTCTATTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATATTATTTTGTTTCCA
AATGAAAATTAAATCAAA
Found at i:10761296 original size:59 final size:59
Alignment explanation
Indices: 10761233--10761344 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 59
10761223 ACTTAATCAA
* * * * * *
10761233 ATAATTCTA-TTTCGGGATTTATTCCCGTCGTTTAATAGATTTTATTTTGATTTAATTAT
1 ATAATT-TAGTTTCGGGATTTAGTCCCGTCATTTAACAAAATTGATTTTGATTTAATTAT
*
10761292 ATAATTTAGTTTCGGGATTTAGTCCTGTCATTTAACAAAATTGATTTTGATTT
1 ATAATTTAGTTTCGGGATTTAGTCCCGTCATTTAACAAAATTGATTTTGATTT
10761345 TGTTTCATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
58 2 0.04
59 43 0.96
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (59 bp):
ATAATTTAGTTTCGGGATTTAGTCCCGTCATTTAACAAAATTGATTTTGATTTAATTAT
Found at i:10764699 original size:20 final size:20
Alignment explanation
Indices: 10764676--10764725 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
10764666 CATTTATCTT
* *
10764676 ATTTTATTTGATTTTAATCA
1 ATTTGATTTAATTTTAATCA
10764696 ATTTGATTTAATTTTAATCA
1 ATTTGATTTAATTTTAATCA
*
10764716 AATTGATTTA
1 ATTTGATTTA
10764726 TTGGCTCCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.56
Consensus pattern (20 bp):
ATTTGATTTAATTTTAATCA
Found at i:10765581 original size:22 final size:24
Alignment explanation
Indices: 10765555--10765598 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
10765545 GAAAAATATT
10765555 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
10765577 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
10765599 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:10769152 original size:23 final size:22
Alignment explanation
Indices: 10769109--10769170 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
10769099 AATTTAAAAA
10769109 TTTAAAAAATATAAAAATATTT
1 TTTAAAAAATATAAAAATATTT
* *
10769131 TTTAAAAAATCATTAAATTATTT
1 TTTAAAAAAT-ATAAAAATATTT
* * *
10769154 TTTTAAAATTTTAAAAA
1 TTTAAAAAATATAAAAA
10769171 ATAATTAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTAAAAAATATAAAAATATTT
Found at i:10770049 original size:23 final size:23
Alignment explanation
Indices: 10770008--10770051 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10769998 TAGTTTTAAT
10770008 TTTTATTATATAAAAAATAAATA
1 TTTTATTATATAAAAAATAAATA
*
10770031 TTTTA-TATTTAAAATAATAAA
1 TTTTATTATATAAAA-AATAAA
10770052 AATAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTTATTATATAAAAAATAAATA
Found at i:10790126 original size:45 final size:44
Alignment explanation
Indices: 10790020--10790540 Score: 189
Period size: 45 Copynumber: 11.7 Consensus size: 44
10790010 TCGCATCTAG
* * *
10790020 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAA
*
10790064 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGAAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGAAAA
* * * ** *
10790109 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAG-CCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGAAAA
* * * * * ** *
10790153 TCCTATCTCCTTGAAGTTACATTGGAGCAGATTAA--AACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAA--GAAAA
* * * * * *** *
10790197 TCTTATCTCTCTGAAGTTACAG-AGAGCATA-T-CGT-ATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAA
* * * *
10790237 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-TAAGAAAA
* * * *
10790282 TCTTATC-CTCCTGAAGTTGCAGTGAGTTGCAGA--GAGTAGATCGCATCTAG
1 TCTTATCTC-CCTGAAGTTGCAGTG-G-AGCAGACTAAGTA-A--G-A--AAA
* * * *
10790332 TCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-TAAGAAAA
* * * *
10790377 TCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACCGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-CTAAGTA-AGAAAA
* * * *
10790422 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-TAAGAAAA
* * * *
10790467 TCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACCGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-CTAAGTA-AGAAAA
* *
10790512 TCTTATCTCCCTGAAGTTGCGGTCGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
10790541 TATTAAAACC
Statistics
Matches: 364, Mismatches: 71, Indels: 83
0.70 0.14 0.16
Matches are distributed among these distances:
40 22 0.06
41 5 0.01
42 3 0.01
43 12 0.03
44 92 0.25
45 171 0.47
46 19 0.05
47 5 0.01
48 6 0.02
49 1 0.00
50 26 0.07
51 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAA
Found at i:10790379 original size:95 final size:95
Alignment explanation
Indices: 10790211--10790492 Score: 421
Period size: 95 Copynumber: 3.0 Consensus size: 95
10790201 ATCTCTCTGA
* * * *
10790211 AGTTACAGAGAGCATATCGTATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
1 AGTTGCAGAGAGAAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
10790276 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
66 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
* * *
10790306 AGTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGCAA
1 AGTTGCAGAGAGAAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
10790371 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
66 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
* ** * *
10790401 AG--GTAGACCGAAGATGGCA---AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
1 AGTTGCAGAGAGAAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
10790461 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
66 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
10790491 AG
1 AG
10790493 GTAGACCGAA
Statistics
Matches: 173, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
90 70 0.40
93 12 0.07
95 91 0.53
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26
Consensus pattern (95 bp):
AGTTGCAGAGAGAAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
Found at i:10790453 original size:90 final size:90
Alignment explanation
Indices: 10790237--10790531 Score: 473
Period size: 90 Copynumber: 3.2 Consensus size: 90
10790227 TCGTATCTAG
10790237 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGC
* ** * * *
10790302 AGTGAGTTGCAGAGAGTAGATCGCATCTAG
66 AGTGAG--GTAGACCGAAGATGGCA---AA
* *
10790332 TCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGC
10790397 AGTGAGGTAGACCGAAGATGGCAAA
66 AGTGAGGTAGACCGAAGATGGCAAA
10790422 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGC
10790487 AGTGAGGTAGACCGAAGATGGCAAA
66 AGTGAGGTAGACCGAAGATGGCAAA
10790512 TCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGC
10790532 GGTCGAGCAT
Statistics
Matches: 190, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
90 109 0.57
93 12 0.06
95 69 0.36
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (90 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGC
AGTGAGGTAGACCGAAGATGGCAAA
Found at i:10790670 original size:66 final size:67
Alignment explanation
Indices: 10790508--10790675 Score: 284
Period size: 67 Copynumber: 2.5 Consensus size: 67
10790498 CCGAAGATGG
* *
10790508 CAAATCTTATCTCCCTGAAGTTGCGGTCGAGCATATTAAAACCAACAGTGGAGCGGGTTAAAAAC
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAACCAACAGTGGAGCGGGTTAAAAAC
10790573 CT
66 CT
*
10790575 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCAACAGTGGAGCGGG-TAAAAAC
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAACCAACAGTGGAGCGGGTTAAAAAC
10790639 CT
66 CT
* *
10790641 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGA
10790676 CTGGTAGATC
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
66 42 0.44
67 54 0.56
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (67 bp):
CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAACCAACAGTGGAGCGGGTTAAAAAC
CT
Found at i:10792247 original size:13 final size:13
Alignment explanation
Indices: 10792229--10792257 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
10792219 TATATTTTTT
10792229 TTTATTTCAGTTA
1 TTTATTTCAGTTA
10792242 TTTATTTCAGTTA
1 TTTATTTCAGTTA
10792255 TTT
1 TTT
10792258 GTCTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TTTATTTCAGTTA
Found at i:10792690 original size:98 final size:98
Alignment explanation
Indices: 10792569--10792763 Score: 300
Period size: 98 Copynumber: 2.0 Consensus size: 98
10792559 AAAAATCATA
* * * *
10792569 AAGGAAATTTTTCGAGTTTGGGATTATAAAGGAATTGTGTCCTAACGTACTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTACTGGGTGTGATTTCTT
* *
10792634 AAATCTTGGATAAGCGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
* * *
10792667 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTACTGGGTGTGATTTCTT
*
10792732 AAATCTTGGATAAGTGAATGTTCCTTTAAAGT
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGT
10792764 TTTTCATTAT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTACTGGGTGTGATTTCTT
AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
Found at i:10799746 original size:29 final size:29
Alignment explanation
Indices: 10799714--10799925 Score: 230
Period size: 29 Copynumber: 7.3 Consensus size: 29
10799704 AGGATAGTTT
*
10799714 CGACTATCAACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
10799743 CGACCATCAACTATGAAAAGCGATGTTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* * **
10799772 CGACCATCAAATATGAAAAGGGATAGTTT
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
10799801 CGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* * **
10799830 CGACCATCGATTAATGAAAAGGGATGGTTC
1 CGACCATCAACT-ATGAAAAGGGATGGTGA
**
10799860 CGACCATCGAA-TATGAAAAGGGATGGAAA
1 CGACCATC-AACTATGAAAAGGGATGGTGA
* *
10799889 CGACCATCGAA-AATGAAAAGGGATGGTTA
1 CGACCATC-AACTATGAAAAGGGATGGTGA
10799918 CGACCATC
1 CGACCATC
10799926 GTTTAGCATA
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
29 130 0.84
30 24 0.15
31 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (29 bp):
CGACCATCAACTATGAAAAGGGATGGTGA
Found at i:10799787 original size:58 final size:58
Alignment explanation
Indices: 10799714--10799925 Score: 257
Period size: 58 Copynumber: 3.6 Consensus size: 58
10799704 AGGATAGTTT
* * * * *
10799714 CGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGCGATGTTGA
1 CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
* * * *
10799772 CGACCATCAAATATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
* * * **
10799830 CGACCATCGATTAATGAAAAGGGATGGTTCCGACCATCGAA-TATGAAAAGGGATGGAAA
1 CGACCATCAAAT-ATGAAAAGGGATGGTTACGACCATC-AACTATGAAAAGGGATGGTGA
10799889 CGACCATCGAAA-ATGAAAAGGGATGGTTACGACCATC
1 CGACCATC-AAATATGAAAAGGGATGGTTACGACCATC
10799926 GTTTAGCATA
Statistics
Matches: 131, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
58 83 0.63
59 46 0.35
60 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (58 bp):
CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
Found at i:10799898 original size:88 final size:87
Alignment explanation
Indices: 10799714--10799926 Score: 275
Period size: 88 Copynumber: 2.4 Consensus size: 87
10799704 AGGATAGTTT
* *
10799714 CGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGCGATGTTGACGACCAT
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACTATGAAAAGCGATGTTGACGACCAT
***
10799779 CAAATATGAAAAGGGATAGTTT
66 CAAATATGAAAAGGGATAGAAA
* * *
10799801 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATGGTT-CCGACC
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACT-ATGAAAAGCGAT-GTTGACGACC
* *
10799865 ATCGAATATGAAAAGGGATGGAAA
64 ATCAAATATGAAAAGGGATAGAAA
* ** *
10799889 CGACCATCGAAAATGAAAAGGGATGGTTACGACCATCG
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCG
10799927 TTTAGCATAC
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
87 38 0.35
88 69 0.63
89 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (87 bp):
CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACTATGAAAAGCGATGTTGACGACCAT
CAAATATGAAAAGGGATAGAAA
Found at i:10805335 original size:15 final size:15
Alignment explanation
Indices: 10805315--10805351 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
10805305 AATTGTTCGC
10805315 AGCAATAGTTGGTCT
1 AGCAATAGTTGGTCT
10805330 AGCAATAGTTGGTCT
1 AGCAATAGTTGGTCT
10805345 AGCAATA
1 AGCAATA
10805352 CTTGATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (15 bp):
AGCAATAGTTGGTCT
Found at i:10809788 original size:125 final size:127
Alignment explanation
Indices: 10809611--10809861 Score: 373
Period size: 125 Copynumber: 2.0 Consensus size: 127
10809601 AAATGAAAGG
* * * *
10809611 AGGATGATTTATCAGAAGAATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGTAGGT
1 AGGATGATTTATAAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGGT
*
10809676 CTTGGAA-AAATAATTTCAACTTGACATTTCTGAGCAAATAGTTT-AAAAAACGCTTCAAGC
66 CCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
* * *
10809736 AGGATGCTTTATAAGAA-AATTTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGTTGG
1 AGGATGATTTATAAGAAGAATTTT-TGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGG
* * *
10809800 TCCTGGAAGAAATAATTTCAAGTTGACGTTTTTGAGCAAATAGTTTAAAAAAACGCTTCAAG
65 TCCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAG
10809862 TAGGGGTGGA
Statistics
Matches: 112, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
124 6 0.05
125 57 0.51
126 34 0.30
127 15 0.13
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (127 bp):
AGGATGATTTATAAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGGT
CCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
Found at i:10810615 original size:29 final size:29
Alignment explanation
Indices: 10810583--10810639 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
10810573 ATCGTTATGC
*
10810583 ATATATATTATCACTAGTTAAAAATGAAT
1 ATATATATTATCACCAGTTAAAAATGAAT
10810612 ATATATATTATCACCAGTTAAAAATGAA
1 ATATATATTATCACCAGTTAAAAATGAA
10810640 GAAAAGAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (29 bp):
ATATATATTATCACCAGTTAAAAATGAAT
Found at i:10811786 original size:31 final size:30
Alignment explanation
Indices: 10811737--10811795 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
10811727 TTTGTTTAGA
10811737 AAAAAATATATTTTAAAATTATT-AAATAGG
1 AAAAAATATATTTTAAAATT-TTCAAATAGG
*
10811767 AAAAAATATTTTTTAAAAATTTTCAAATA
1 AAAAAATATATTTT-AAAATTTTCAAATA
10811796 ATATAAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (30 bp):
AAAAAATATATTTTAAAATTTTCAAATAGG
Found at i:10813563 original size:21 final size:21
Alignment explanation
Indices: 10813539--10813580 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10813529 CAGCTTCCAA
* *
10813539 CGGGGGTTGTGGTTGCTCCGG
1 CGGGGATTGTGGTTCCTCCGG
*
10813560 CGGGGATTTTGGTTCCTCCGG
1 CGGGGATTGTGGTTCCTCCGG
10813581 TAGGGTATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.21, G:0.45, T:0.31
Consensus pattern (21 bp):
CGGGGATTGTGGTTCCTCCGG
Found at i:10822915 original size:10 final size:11
Alignment explanation
Indices: 10822892--10822916 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10822882 AAGGTATAGT
10822892 AAAATATTTAA
1 AAAATATTTAA
10822903 AAAATATTTAA
1 AAAATATTTAA
10822914 AAA
1 AAA
10822917 GAAAGAGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATATTTAA
Found at i:10823189 original size:29 final size:30
Alignment explanation
Indices: 10823150--10823209 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10823140 ATTTTAATTT
*
10823150 AAAATCAAAA-TTAGCAGTAAAATTCAATA
1 AAAATCAAAATTTAGCAGTAAAATCCAATA
* * *
10823179 AAAATGAAAATTTAGTATTAAAATCCAATA
1 AAAATCAAAATTTAGCAGTAAAATCCAATA
10823209 A
1 A
10823210 TATAAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.58, C:0.08, G:0.07, T:0.27
Consensus pattern (30 bp):
AAAATCAAAATTTAGCAGTAAAATCCAATA
Found at i:10826918 original size:22 final size:21
Alignment explanation
Indices: 10826888--10826928 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10826878 CAAATGTGTT
*
10826888 AAAATTATTAATTAAAAATAAA
1 AAAAATATT-ATTAAAAATAAA
*
10826910 AAAAATATTTTTAAAAATA
1 AAAAATATTATTAAAAATA
10826929 CTAATTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAAATATTATTAAAAATAAA
Found at i:10832407 original size:70 final size:70
Alignment explanation
Indices: 10832289--10832575 Score: 380
Period size: 70 Copynumber: 4.1 Consensus size: 70
10832279 TTGAATTTGT
* * * *
10832289 GAGCCTTAAAGCTATAGCTGGGAGCTTCAGCTCGCACTTACTAGTTTGGAGGCTGGGGTGTT-AA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
10832353 GCCTAC
66 -CCTAC
* * * * *
10832359 GAGCTTTAAAGCTACAGTTGGGAGCTTCAGCTTACACTAACTAGTTTGGAGGTTGCGGTGTTAAA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
* *
10832424 CTTGC
66 CCTAC
* * * * *
10832429 AAGCCCTAAAGCTACAGCTGGGAGCTTCAACTTGCACTAACTATTTTGGAGGCTGCGGTTTTGAA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
10832494 CCTAC
66 CCTAC
*
10832499 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACT-GTTTTGGAGGCTGTGGTGTTGA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAG-TTTGGAGGCTGCGGTGTTGA
*
10832563 ACCTAT
65 ACCTAC
10832569 GAGCCTT
1 GAGCCTT
10832576 TAGATCACAA
Statistics
Matches: 186, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
70 184 0.99
71 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (70 bp):
GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
CCTAC
Found at i:10832601 original size:70 final size:69
Alignment explanation
Indices: 10832306--10833040 Score: 278
Period size: 71 Copynumber: 10.4 Consensus size: 69
10832296 AAAGCTATAG
* * * * * * *
10832306 CTGGGAG-CTTCAGCTCGCACTTACTAGTTTGGAGGCTGGGGTGTT-AAGCCTACGAGCTTTAAA
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAA-CCTACGAGCCTTAGA
* *
10832369 GCTACAG
64 TC-ACAA
* * * * * * * * * * * * *
10832376 TTGGGAG-CTTCAGCTTACACTAACTAGTTTGGAGGTTGCGGTGTTAAACTTGCAAGCCCTAAAG
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCCTTAGAT
*
10832440 CTACAG
65 C-ACAA
* * * * *
10832446 CTGGGAG-CTTCAACTTGCACTAACTATTTTGGAGGCTGCGGTTTTGAACCTACGAGCCTTAAAG
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCCTTAGAT
*
10832510 CTACAG
65 C-ACAA
* * *
10832516 CTGGGAG-CTTCAGCTTGCACTAACTGTTTTGGAGGCTGTGGTGTTGAACCTATGAGCCTTTAGA
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCC-TTAGA
10832580 TCACAA
64 TCACAA
* ** * *
10832586 CTGGTG-GCCTTAGCTTTCACTAACTATTTTCAGG-GATTGTGGTACTGAACCTACGAGCCCTAA
1 CTGG-GAGCCTTAGCTTGCACTAACTATTTT--GGAGGCTGTGGTATTGAACCTACGAG-CCTTA
10832649 GATCACAA
62 GATCACAA
** * *** * * *
10832657 CTGGGAGCCTTAGC-T-CTAGCTAACTATTTTTAAGGGTTGTAAAATTGAACTTGCGAGCCCTAA
1 CTGGGAGCCTTAGCTTGC-A-CTAACTATTTTGGA-GGCTGTGGTATTGAACCTACGAG-CCTTA
*
10832720 GATCACAG
62 GATCACAA
* * * * * * * ** *
10832728 TTGGGAGCCTTAGCTCT-CTCTAACTATTTTTGAGGTTTGTAGAATTGAACTTGTGAGCCCTAAG
1 CTGGGAGCCTTAGCT-TGCACTAACTATTTTGGAGG-CTGTGGTATTGAACCTACGAG-CCTTAG
*
10832792 ATCACAG
63 ATCACAA
* * * * * * * * * *
10832799 TTAGGAGCCTTAGCACT-CTCTAACTATTTTTGAGG-GGTTACGGTATTGAATCAATGAGACCTA
1 CTGGGAGCCTTAGC-TTGCACTAACTATTTTGGAGGCTG-T--GGTATTGAACCTACGAG-CCTT
*
10832862 AGATCATAA
61 AGATCACAA
* ** * * * *
10832871 CTGGGAGCTTTAGCTCT-CTTTAACTATTTTTGGGGGCTGCGGTATTGAACCTGCGAGCCCTAAG
1 CTGGGAGCCTTAGCT-TGCACTAACTA-TTTTGGAGGCTGTGGTATTGAACCTACGAG-CCTTAG
*
10832935 ATCACAG
63 ATCACAA
* * * * * * ** *
10832942 TTGGGAGCCTTAGC-T-CTCTAACTATTATTGGGGGCTGCGGTATTAAACTTGTGAGCTCTAAGA
1 CTGGGAGCCTTAGCTTGCACTAACTATT-TTGGAGGCTGTGGTATTGAACCTACGAGC-CTTAGA
*
10833005 TCATAA
64 TCACAA
* *
10833011 CTGGGAGTCTTAGCTCT-CTCTAACTATTTT
1 CTGGGAGCCTTAGCT-TGCACTAACTATTTT
10833041 TTTGAGAAAG
Statistics
Matches: 548, Mismatches: 91, Indels: 52
0.79 0.13 0.08
Matches are distributed among these distances:
68 3 0.01
69 58 0.11
70 201 0.37
71 230 0.42
72 46 0.08
73 9 0.02
74 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (69 bp):
CTGGGAGCCTTAGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCCTTAGATC
ACAA
Found at i:10832899 original size:143 final size:139
Alignment explanation
Indices: 10832715--10833041 Score: 397
Period size: 143 Copynumber: 2.3 Consensus size: 139
10832705 ACTTGCGAGC
* ** * ** * *
10832715 CCTAAGATCACAGTTGGGAGCCTTAGCTCTCTCTAACTATTTTTGAGGTTTGTAGAATTGAACTT
1 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
* * *
10832780 GTGAGCCCTAAGATCACAGTTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTACGGTAT
66 GCGAGCCCTAAGATCACAGTTAGGAGCCTTAG--CTCTCTAACTATTATTG-GGGGCTACGGTAT
*
10832845 TGAATCAATGAGA-
128 T-AAAC-ATGAGAG
* * * *
10832858 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTTTAACTATTTTTGGGGGCTGCGGTATTGAACCT
1 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
* *
10832923 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCTCTCTAACTATTATTGGGGGCTGCGGTATTAA
66 GCGAGCCCTAAGATCACAGTTAGGAGCCTTAGCTCTCTAACTATTATTGGGGGCTACGGTATTAA
* *
10832988 ACTTGTGAG
131 ACATGAGAG
10832997 CTCTAAGATCATAACTGGGAG-TCTTAGCTCTCTCTAACTATTTTT
1 C-CTAAGATCATAACTGGGAGCT-TTAGCTCTCTCTAACTATTTTT
10833042 TTGAGAAAGG
Statistics
Matches: 160, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
138 4 0.03
139 5 0.03
140 52 0.32
141 16 0.10
143 83 0.52
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (139 bp):
CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
GCGAGCCCTAAGATCACAGTTAGGAGCCTTAGCTCTCTAACTATTATTGGGGGCTACGGTATTAA
ACATGAGAG
Found at i:10833046 original size:214 final size:213
Alignment explanation
Indices: 10832644--10833041 Score: 528
Period size: 214 Copynumber: 1.9 Consensus size: 213
10832634 ACCTACGAGC
* * *
10832644 CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGTTGTAAAATTGAACTT
1 CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGCTGCAAAATTGAACCT
* ** *
10832709 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCTCTCTCTAACTATTTTTGAGGTTTGTAGAATT
66 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGC-CTCTCTAACTATTATTGAGGGCTGCAGAATT
* **
10832774 GAACTTGTGAGCCCTAAGATCACAGTTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTA
130 AAACTTGTGAGCCCTAAGATCACAACTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTA
10832839 CGGTATTGAATCAATGAGA
195 CGGTATTGAATCAATGAGA
* * *** ** ***
10832858 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTTTAACTATTTTTGGGGGCTGCGGTATTGAACCT
1 CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGCTGCAAAATTGAACCT
* * *
10832923 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAG-CTCTCTAACTATTATTGGGGGCTGCGGTATTA
66 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCCTCTCTAACTATTATTGAGGGCTGCAGAATTA
* * * * *
10832987 AACTTGTGAGCTCTAAGATCATAACTGGGAGTCTTAGCTCTCTCTAACTATTTTT
131 AACTTGTGAGCCCTAAGATCACAACTAGGAGCCTTAGCACTCTCTAACTATTTTT
10833042 TTGAGAAAGG
Statistics
Matches: 156, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
212 72 0.46
214 84 0.54
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (213 bp):
CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGCTGCAAAATTGAACCT
GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCCTCTCTAACTATTATTGAGGGCTGCAGAATTA
AACTTGTGAGCCCTAAGATCACAACTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTAC
GGTATTGAATCAATGAGA
Found at i:10840226 original size:18 final size:17
Alignment explanation
Indices: 10840193--10840230 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
10840183 TTAAATGTAA
10840193 TTTAAATACAACTTTTT
1 TTTAAATACAACTTTTT
10840210 TTTAATATACGAA-TTTTT
1 TTTAA-ATAC-AACTTTTT
10840228 TTT
1 TTT
10840231 TGAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 12 0.63
19 2 0.11
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTAAATACAACTTTTT
Found at i:10850202 original size:50 final size:50
Alignment explanation
Indices: 10850099--10850291 Score: 161
Period size: 50 Copynumber: 3.7 Consensus size: 50
10850089 TTTCTTGTTC
* * * * * * ** * *
10850099 TGCCAATGTCATATCCTAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* * * *
10850149 TGCCCATGCCATGTTCCAAACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* * * *
10850199 TGCCAACGCCATGTCCCAGACGTGGTCTTACATGGGACCTATCATAACCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAT---CTC-A-G
*
10850254 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA
10850292 TTTCTTTATC
Statistics
Matches: 113, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 73 0.65
53 3 0.03
54 1 0.01
55 1 0.01
56 35 0.31
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
Found at i:10857350 original size:50 final size:48
Alignment explanation
Indices: 10857226--10857414 Score: 191
Period size: 50 Copynumber: 3.8 Consensus size: 48
10857216 GATAATAACA
* * *
10857226 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-TTTCATAT-CG
* * * *
10857275 AGCCAATGCCATCTCCCATATATGGTCTTACATGGGAGTTTTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TTTTCATATC-G
* ** ** *
10857325 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCATTCATCTCG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TTTTCATATCG
*
10857374 TTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATTT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTT
10857415 CTTTATCCAA
Statistics
Matches: 112, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
48 1 0.01
49 40 0.36
50 71 0.63
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTTTCATATCG
Found at i:10861889 original size:21 final size:20
Alignment explanation
Indices: 10861860--10861905 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
10861850 CGAAATGCAA
10861860 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
10861881 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
10861901 T-AACC
1 TCAACC
10861906 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:10863348 original size:30 final size:30
Alignment explanation
Indices: 10863264--10863341 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
10863254 TTATTGAAAT
*
10863264 GTGGAAGCCTTTGTGGTTGTTCTCTGATAA
1 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
10863294 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
1 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
*
10863324 GTGGAAGGCTTTGTGGCT
1 GTGGAAGCCTTTGTGGCT
10863342 AATCTCTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.15, C:0.14, G:0.33, T:0.37
Consensus pattern (30 bp):
GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
Found at i:10863424 original size:29 final size:29
Alignment explanation
Indices: 10863334--10863425 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
10863324 GTGGAAGGCT
*
10863334 TTGTGGC-TAATCTCTTATATGTGAGCCC
1 TTGTGGCATAATCTATTATATGTGAGCCC
** *
10863362 TTGTCACATAATCTGTTATATGTGAGCCC
1 TTGTGGCATAATCTATTATATGTGAGCCC
** *
10863391 TTGTGGTGTAATCTATTATATGTGAGCCA
1 TTGTGGCATAATCTATTATATGTGAGCCC
10863420 TTGTGG
1 TTGTGG
10863426 AAGAATATGT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 5 0.09
29 49 0.91
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (29 bp):
TTGTGGCATAATCTATTATATGTGAGCCC
Found at i:10869607 original size:36 final size:37
Alignment explanation
Indices: 10869567--10869639 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 37
10869557 TCAAAAACCT
*
10869567 GCAAAGCAAACACTCAA-CACTCAAAAAGAAAAATTA
1 GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
** ** *
10869603 GCAAACCTTACTGTTAATCACTCAAAAAGAAAAATTA
1 GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
10869640 AATTCTCAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
36 11 0.37
37 19 0.63
ACGTcount: A:0.53, C:0.21, G:0.08, T:0.18
Consensus pattern (37 bp):
GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
Found at i:10874497 original size:22 final size:21
Alignment explanation
Indices: 10874469--10874515 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10874459 AGGACGAGGC
*
10874469 TATGTGGCAGTTTAACTGCAAT
1 TATGTGGCAG-TTAACGGCAAT
* *
10874491 TATGTGGCCGTTATCGGCAAT
1 TATGTGGCAGTTAACGGCAAT
10874512 TATG
1 TATG
10874516 GTGTGGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (21 bp):
TATGTGGCAGTTAACGGCAAT
Found at i:10879753 original size:27 final size:27
Alignment explanation
Indices: 10879722--10879899 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10879712 TAAATTGTAC
10879722 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10879749 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10879775 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10879803 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10879831 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10879858 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10879885 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10879900 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10879836 original size:82 final size:81
Alignment explanation
Indices: 10879723--10879878 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10879713 AAATTGTACA
* *
10879723 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10879787 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
10879804 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10879869 TGCGAGTTGA
65 TGCGAATTGA
10879879 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10879890 original size:82 final size:81
Alignment explanation
Indices: 10879719--10879899 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10879709 GATTAAATTG
* *
10879719 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10879784 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10879800 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10879864 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10879882 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10879900 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10882845 original size:30 final size:30
Alignment explanation
Indices: 10882811--10882928 Score: 173
Period size: 30 Copynumber: 3.9 Consensus size: 30
10882801 AATCAGTCTA
* *
10882811 GGCCATAGCCCTATACAGTAGCAGTGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
*
10882841 GGCCATAGCCCAATACAGTAACAGAGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
* *
10882871 GGCCTTAGCCCAATACAGTAACAGTCTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
* *
10882901 GGCCTTAGTCCAATACAGTAACAGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTG
10882929 GCCTTAGCCT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (30 bp):
GGCCATAGCCCAATACAGTAACAGTGTGTG
Found at i:10883095 original size:26 final size:26
Alignment explanation
Indices: 10883066--10883162 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 26
10883056 ATATCGTAGT
*
10883066 AAAGCTGCCAGTATCAGTAACGCAGC
1 AAAGCTGCCAGTAACAGTAACGCAGC
* * **
10883092 AAAGTTACCAGTAACAGTAACGGGGC
1 AAAGCTGCCAGTAACAGTAACGCAGC
* * * ** * *
10883118 AGAGTTGCTAGTCTCAGTATCGCACC
1 AAAGCTGCCAGTAACAGTAACGCAGC
10883144 AAAGCTGCCAGTAACAGTA
1 AAAGCTGCCAGTAACAGTA
10883163 TTTGTGGCAA
Statistics
Matches: 52, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.19
Consensus pattern (26 bp):
AAAGCTGCCAGTAACAGTAACGCAGC
Found at i:10883387 original size:27 final size:27
Alignment explanation
Indices: 10883357--10883522 Score: 149
Period size: 27 Copynumber: 6.2 Consensus size: 27
10883347 TATAACGGTC
*
10883357 ATTTTACCCTTCGAGGGTATTTCAAAA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* * *
10883384 ATTTTACCCTTTGGGGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* *
10883411 ATTTTACCTTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* * ***
10883438 ATTTTACCCTTTGGGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* * *
10883465 A-TTTACCTTTTG-GGAGTATTTCGATA
1 ATTTTACCCTTCGAGG-GTATTTCAATA
**
10883491 ATTTTACCCTTCG-GGGATATTTCGGTA
1 ATTTTACCCTTCGAGGG-TATTTCAATA
10883518 ATTTT
1 ATTTT
10883523 CCCACGAATC
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
25 2 0.02
26 21 0.18
27 93 0.80
ACGTcount: A:0.21, C:0.14, G:0.20, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCAATA
Found at i:10883426 original size:54 final size:54
Alignment explanation
Indices: 10883352--10883522 Score: 238
Period size: 54 Copynumber: 3.2 Consensus size: 54
10883342 TAGGGTATAA
* * * *
10883352 CGGTCATTTTACCCTTCGAGGGTATTTCAAAAATTTTACCCTTTGGGGGTATTT
1 CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
*
10883406 CAGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
1 CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
* * * *
10883460 TGGTAA-TTTACCTTTTG-GGAGTATTTCGATAATTTTACCCTTCGGGGATATTT
1 CGGTAATTTTACCTTTCGAGG-GTATTTCGATAATTTTACCCTTTGGGGGTATTT
10883513 CGGTAATTTT
1 CGGTAATTTT
10883523 CCCACGAATC
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
52 2 0.02
53 46 0.44
54 56 0.54
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.44
Consensus pattern (54 bp):
CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
Found at i:10883493 original size:53 final size:53
Alignment explanation
Indices: 10883359--10883521 Score: 229
Period size: 53 Copynumber: 3.1 Consensus size: 53
10883349 TAACGGTCAT
* * * *
10883359 TTTACCCTTCGAGGGTATTTCAAAAATTTTACCCTTTGGGGGTATTTCAGTAA
1 TTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
*
10883412 TTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTTGGTAA
1 -TTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
* * *
10883466 TTTACCTTTTG-GGAGTATTTCGATAATTTTACCCTTCGGGGATATTTCGGTAA
1 TTTACCTTTCGAGG-GTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
10883519 TTT
1 TTT
10883522 TCCCACGAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
52 2 0.02
53 49 0.49
54 48 0.48
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (53 bp):
TTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
Found at i:10888432 original size:30 final size:30
Alignment explanation
Indices: 10888398--10888458 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
10888388 AATTTAATTA
10888398 TGCCTTAATTACTTGTCTAAATGTCTTGTG
1 TGCCTTAATTACTTGTCTAAATGTCTTGTG
10888428 TGCCTTAATTACTTGTCTAAATGTCTTGTG
1 TGCCTTAATTACTTGTCTAAATGTCTTGTG
10888458 T
1 T
10888459 ATGTCATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (30 bp):
TGCCTTAATTACTTGTCTAAATGTCTTGTG
Found at i:10889626 original size:27 final size:27
Alignment explanation
Indices: 10889583--10889646 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
10889573 AGCAGAGCTG
10889583 CCAGTAA-AGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
10889609 CCAGTAACAGTA-ACTGTGGCAGAGCCA
1 CCAGTAACAGTATA-TGTGGCAAAGCCA
10889636 CCAG-AACAGTA
1 CCAGTAACAGTA
10889647 CTTCCTCCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
26 15 0.43
27 20 0.57
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:10889836 original size:27 final size:27
Alignment explanation
Indices: 10889806--10889903 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
10889796 TAACTATCGG
*
10889806 GGGTATTTCGGTAATTTTACCCATTAA
1 GGGTATTTCGATAATTTTACCCATTAA
* * **
10889833 GGGTAATACGATAATTTTACCCATCGA
1 GGGTATTTCGATAATTTTACCCATTAA
* * *
10889860 GGTTATTTCAATAATTTTACCCATTAG
1 GGGTATTTCGATAATTTTACCCATTAA
* *
10889887 GGGTATTTTGGTAATTT
1 GGGTATTTCGATAATTT
10889904 GCCCACGAAT
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCATTAA
Found at i:10889903 original size:54 final size:54
Alignment explanation
Indices: 10889779--10889891 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
10889769 ACCCTAACGG
* * * * **
10889779 GGGTATTACAATAATTTTAACTATCGGGGGTATTTCGGTAATTTTACCCATTAA
1 GGGTAATACGATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
* * *
10889833 GGGTAATACGATAATTTTACCCATCGAGGTTATTTCAATAATTTTACCCATTAG
1 GGGTAATACGATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
10889887 GGGTA
1 GGGTA
10889892 TTTTGGTAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (54 bp):
GGGTAATACGATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
Found at i:10892922 original size:27 final size:27
Alignment explanation
Indices: 10892892--10893069 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10892882 ATATTGAGTC
* * * *
10892892 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10892919 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10892946 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10892974 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10893001 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10893028 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10893055 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10893070 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10893031 original size:82 final size:81
Alignment explanation
Indices: 10892913--10893068 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10892903 TGCTATATAA
* *
10892913 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10892978 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10892995 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10893059 CACTTAGTGC
65 CACTTAGTGC
10893069 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.