Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 38 of 185
Found at i:11220192 original size:22 final size:19
Alignment explanation
Indices: 11220153--11220194 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
11220143 TGCAAAGTTG
11220153 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
11220172 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
11220194 A
1 A
11220195 ATGATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:11220313 original size:29 final size:30
Alignment explanation
Indices: 11220255--11220313 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
11220245 TCCTTTTAAA
* *
11220255 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACAACTAAGTTTT
11220285 AATATTTACAAAAAGAG-CAACTAAGTTTT
1 AATATTTACAAAAAGAGACAACTAAGTTTT
11220314 GAAAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACTAAGTTTT
Found at i:11223187 original size:14 final size:14
Alignment explanation
Indices: 11223168--11223195 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11223158 TGTATGATAT
11223168 GAGTCACAAAGGCC
1 GAGTCACAAAGGCC
11223182 GAGTCACAAAGGCC
1 GAGTCACAAAGGCC
11223196 CAACCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.29, T:0.07
Consensus pattern (14 bp):
GAGTCACAAAGGCC
Found at i:11223586 original size:21 final size:22
Alignment explanation
Indices: 11223541--11223586 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
11223531 AGAGAAAAAT
*
11223541 AAAAGTGAAAAAGAAGAAAATG
1 AAAAGTGAAAAAGAAGAAAAGG
**
11223563 AAAA-TGAAAAAGGCGAAAAGG
1 AAAAGTGAAAAAGAAGAAAAGG
11223584 AAA
1 AAA
11223587 GCGAGAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAAGTGAAAAAGAAGAAAAGG
Found at i:11224303 original size:16 final size:16
Alignment explanation
Indices: 11224282--11224312 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
11224272 TGCTGAGTTG
11224282 GTGAAATCCTTACACT
1 GTGAAATCCTTACACT
11224298 GTGAAATCCTTACAC
1 GTGAAATCCTTACAC
11224313 AAGAAGGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
GTGAAATCCTTACACT
Found at i:11228483 original size:29 final size:29
Alignment explanation
Indices: 11228450--11228505 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
11228440 GGACTTCCTA
11228450 CTTCTACTTTTGAAGTCTTTGAGGGTATG
1 CTTCTACTTTTGAAGTCTTTGAGGGTATG
*
11228479 CTTCTGCTTTTGAAGTCTTTGAGGGTA
1 CTTCTACTTTTGAAGTCTTTGAGGGTA
11228506 AAGTGTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.25, T:0.45
Consensus pattern (29 bp):
CTTCTACTTTTGAAGTCTTTGAGGGTATG
Found at i:11242435 original size:50 final size:50
Alignment explanation
Indices: 11242307--11242597 Score: 287
Period size: 50 Copynumber: 5.7 Consensus size: 50
11242297 TATAATAACA
* ** * * *
11242307 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGT-GC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * * * **
11242356 TACTAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
11242406 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
** * * * *
11242456 TGCCAGCGCCATGTCTCAGACATGGTCTTACATTGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
**
11242506 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
11242562 TGCCAATGCCATGTCCCAGACATGGTCTTACTTGGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
11242598 TTCTCTTTAC
Statistics
Matches: 196, Mismatches: 39, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
49 37 0.19
50 122 0.62
53 2 0.01
56 35 0.18
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:11246482 original size:10 final size:10
Alignment explanation
Indices: 11246465--11246513 Score: 57
Period size: 10 Copynumber: 4.8 Consensus size: 10
11246455 AAATATGTGG
11246465 AAAA-TAATC
1 AAAATTAATC
11246474 AAAATTAATC
1 AAAATTAATC
11246484 AAAATTTGATAT-
1 AAAA-TT-A-ATC
11246496 AAAATTAATC
1 AAAATTAATC
11246506 AAAATTAA
1 AAAATTAA
11246514 ACATGTTCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
9 6 0.17
10 18 0.51
11 4 0.11
12 5 0.14
13 2 0.06
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (10 bp):
AAAATTAATC
Found at i:11247564 original size:26 final size:26
Alignment explanation
Indices: 11247521--11247573 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11247511 ATCCCTATTA
*
11247521 TACCCCTAGAAAAATTTTGACAATTT
1 TACCCCTAGAAAAATTTTCACAATTT
* * *
11247547 TACCCCTAGTAAATTTTTCACGATTT
1 TACCCCTAGAAAAATTTTCACAATTT
11247573 T
1 T
11247574 GCCTCTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.40
Consensus pattern (26 bp):
TACCCCTAGAAAAATTTTCACAATTT
Found at i:11253400 original size:15 final size:14
Alignment explanation
Indices: 11253369--11253399 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
11253359 CTTGCTCCTC
11253369 AAACTTTTTAATTA
1 AAACTTTTTAATTA
*
11253383 AAACTTTTTAGTTA
1 AAACTTTTTAATTA
11253397 AAA
1 AAA
11253400 ATAAAGGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (14 bp):
AAACTTTTTAATTA
Found at i:11254518 original size:18 final size:18
Alignment explanation
Indices: 11254492--11254531 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
11254482 TGATATGCTG
* *
11254492 GAAAGTTTTAAAGTTCTT
1 GAAAATTTTAAAGTACTT
11254510 GAAAATTTTAAAGTACTT
1 GAAAATTTTAAAGTACTT
11254528 GAAA
1 GAAA
11254532 TGAACCAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.38
Consensus pattern (18 bp):
GAAAATTTTAAAGTACTT
Found at i:11256518 original size:28 final size:28
Alignment explanation
Indices: 11256475--11256529 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
11256465 ATGTAGTTAC
*
11256475 AGTCTGGGCCTAAGCCCTAAGCAGTAAG
1 AGTCTAGGCCTAAGCCCTAAGCAGTAAG
* *
11256503 AGTCTAGGCCTTAGCCCTAAGTAGTAA
1 AGTCTAGGCCTAAGCCCTAAGCAGTAA
11256530 CAGTGTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (28 bp):
AGTCTAGGCCTAAGCCCTAAGCAGTAAG
Found at i:11256963 original size:27 final size:28
Alignment explanation
Indices: 11256933--11257101 Score: 138
Period size: 27 Copynumber: 6.2 Consensus size: 28
11256923 GGGTGTAACA
* *
11256933 GTCATTTTACCCTAT-AAGGGTATTTTG
1 GTCATTTTACCCTTTCAAGGGTATTTCG
* * *
11256960 GTCATTTTA-CCATTCGAGGGTATTTCA
1 GTCATTTTACCCTTTCAAGGGTATTTCG
* ** *
11256987 ATCATTTTA-CCTTTTGAGGGTATTTTG
1 GTCATTTTACCCTTTCAAGGGTATTTCG
11257014 GTCATTTTA-CCTTTCGAA-GGTATTTCG
1 GTCATTTTACCCTTTC-AAGGGTATTTCG
* *
11257041 GTCATTTTACCC-TTCGAGGGTATTTCA
1 GTCATTTTACCCTTTCAAGGGTATTTCG
* * *
11257068 ATCATTTTACAC-TGCGAA-GGTATTTCG
1 GTCATTTTACCCTTTC-AAGGGTATTTCG
11257095 GTCATTT
1 GTCATTT
11257102 GCCCATGAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.03
27 107 0.93
28 4 0.03
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.44
Consensus pattern (28 bp):
GTCATTTTACCCTTTCAAGGGTATTTCG
Found at i:11257090 original size:81 final size:81
Alignment explanation
Indices: 11256951--11257101 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
11256941 ACCCTATAAG
* ** * *
11256951 GGTATTTTGGTCATTTTACCATTCGAGGGTATTTCAATCATTTTACCTTTTGAGGGTATTTTGGT
1 GGTATTTCGGTCATTTTACCATTCGAGGGTATTTCAATCATTTTACCTTGCGAAGGTATTTCGGT
11257016 CATTTTACCTTTCGAA
66 CATTTTACCTTTCGAA
*
11257032 GGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAATCATTTTACAC-TGCGAAGGTATTTCGG
1 GGTATTTCGGTCATTTTACCATTCGAGGGTATTTCAATCATTTTAC-CTTGCGAAGGTATTTCGG
11257096 TCATTT
65 TCATTT
11257102 GCCCATGAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 62 0.98
82 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (81 bp):
GGTATTTCGGTCATTTTACCATTCGAGGGTATTTCAATCATTTTACCTTGCGAAGGTATTTCGGT
CATTTTACCTTTCGAA
Found at i:11257094 original size:54 final size:53
Alignment explanation
Indices: 11256933--11257101 Score: 205
Period size: 54 Copynumber: 3.1 Consensus size: 53
11256923 GGGTGTAACA
* * *
11256933 GTCATTTTACCCTATAAGGGTATTTTGGTCATTTTACCATTCGAGGGTATTTCA
1 GTCATTTTACCCT-TGAGGGTATTTTGGTCATTTTACCATTCGAAGGTATTTCG
* * *
11256987 ATCATTTTACCTTTTGAGGGTATTTTGGTCATTTTACCTTTCGAAGGTATTTCG
1 GTCATTTTACC-CTTGAGGGTATTTTGGTCATTTTACCATTCGAAGGTATTTCG
*** *
11257041 GTCATTTTACCCTTCGAGGGTATTTCAATCATTTTA-CACTGCGAAGGTATTTCG
1 GTCATTTTACCCTT-GAGGGTATTTTGGTCATTTTACCA-TTCGAAGGTATTTCG
11257095 GTCATTT
1 GTCATTT
11257102 GCCCATGAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 3 0.03
54 95 0.96
55 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.44
Consensus pattern (53 bp):
GTCATTTTACCCTTGAGGGTATTTTGGTCATTTTACCATTCGAAGGTATTTCG
Found at i:11257812 original size:20 final size:18
Alignment explanation
Indices: 11257779--11257820 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
11257769 TAGAATGAAG
11257779 AGGAGAAGAAGAGAAGAA
1 AGGAGAAGAAGAGAAGAA
*
11257797 AGGAGAAGAGATGAGAAGAG
1 AGGAGAAGA-A-GAGAAGAA
11257817 AGGA
1 AGGA
11257821 TTCAACAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 1 0.05
20 11 0.52
ACGTcount: A:0.55, C:0.00, G:0.43, T:0.02
Consensus pattern (18 bp):
AGGAGAAGAAGAGAAGAA
Found at i:11269010 original size:9 final size:9
Alignment explanation
Indices: 11268996--11269031 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
11268986 ATTTTACAAT
11268996 TCGAATAAC
1 TCGAATAAC
*
11269005 TCGAATAAT
1 TCGAATAAC
11269014 TCGAATAAC
1 TCGAATAAC
*
11269023 TCAAATAAC
1 TCGAATAAC
11269032 AGATTGGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.47, C:0.19, G:0.08, T:0.25
Consensus pattern (9 bp):
TCGAATAAC
Found at i:11269016 original size:18 final size:18
Alignment explanation
Indices: 11268993--11269030 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
11268983 TAAATTTTAC
*
11268993 AATTCGAATAACTCGAAT
1 AATTCGAATAACTCAAAT
11269011 AATTCGAATAACTCAAAT
1 AATTCGAATAACTCAAAT
11269029 AA
1 AA
11269031 CAGATTGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (18 bp):
AATTCGAATAACTCAAAT
Found at i:11279712 original size:28 final size:28
Alignment explanation
Indices: 11279615--11279735 Score: 116
Period size: 30 Copynumber: 4.1 Consensus size: 28
11279605 CATGCAGAAT
* * * *
11279615 CAGTCTGGGCCTGAGCCCTATACAGTAG
1 CAGTGTGGGCCTTAGCCCAATACAGTAA
* * *
11279643 CAGTGTGTCGGCCATAACCTAATACAGTAA
1 CAGTGTG--GGCCTTAGCCCAATACAGTAA
*
11279673 CAGAGTGTGGGCCTTAGCCCAATTCAGTAA
1 C--AGTGTGGGCCTTAGCCCAATACAGTAA
*
11279703 CAGTGTGGGCCTTAGCCCAAAACAGTAA
1 CAGTGTGGGCCTTAGCCCAATACAGTAA
11279731 TCAGT
1 -CAGT
11279736 ACAAATGCAG
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
28 31 0.41
29 4 0.05
30 34 0.45
32 6 0.08
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (28 bp):
CAGTGTGGGCCTTAGCCCAATACAGTAA
Found at i:11279873 original size:26 final size:26
Alignment explanation
Indices: 11279844--11279944 Score: 130
Period size: 26 Copynumber: 3.9 Consensus size: 26
11279834 ACCAATATCG
*
11279844 CAGCAAAGCTGCCAGTAATAGTAACA
1 CAGCAAAGCTGCCAGTAACAGTAACA
* *
11279870 CAGCAAAGCTGCCAGTAACAATAACG
1 CAGCAAAGCTGCCAGTAACAGTAACA
* * * * *
11279896 CAGCAGAGTTGCTAGTATCAGTAATA
1 CAGCAAAGCTGCCAGTAACAGTAACA
11279922 CAGCAAAGCTGCCAGTAACAGTA
1 CAGCAAAGCTGCCAGTAACAGTA
11279945 TTTGTGGCAA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAGTAACA
Found at i:11279919 original size:52 final size:52
Alignment explanation
Indices: 11279836--11279941 Score: 151
Period size: 52 Copynumber: 2.0 Consensus size: 52
11279826 GCCAACACAC
*
11279836 CAATATCGCAGCAAAGCTGCCAGTAATAGTAACACAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAATAGTAACACAGCAAAGCTGCCAGTAA
* * * *
11279888 CAATAACGCAGCAGAGTTGCTAGT-ATCAGTAATACAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAAT-AGTAACACAGCAAAGCTGCCAGTAA
11279940 CA
1 CA
11279942 GTATTTGTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.04
52 46 0.96
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.17
Consensus pattern (52 bp):
CAATAACGCAGCAAAGCTGCCAGTAATAGTAACACAGCAAAGCTGCCAGTAA
Found at i:11280156 original size:27 final size:27
Alignment explanation
Indices: 11280126--11280373 Score: 256
Period size: 27 Copynumber: 9.3 Consensus size: 27
11280116 TATAACAGTT
11280126 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
*
11280153 ATTTTACCCTT-TAGGGGTATTTTGGTA
1 ATTTTACCCTTCGA-GGGTATTTTGGTA
* * *
11280180 ATTTTACTCTTCAAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* **
11280207 A-TTTACCCTTCGAAGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* **
11280233 ATTTCACCCTTTAAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* *
11280260 ATTTTACCCTTCGAGGATATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* * *
11280287 ATTTTACCCCTCAAGGGTATTTTGGTC
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* * *
11280314 ATTTTACCCTAT--AGGGTATTTCGATC
1 ATTTTACCCT-TCGAGGGTATTTTGGTA
*
11280340 A-TTTACCCTAT-GAGGGTATTTTGGTC
1 ATTTTACCCT-TCGAGGGTATTTTGGTA
11280366 ATTTTACC
1 ATTTTACC
11280374 TTTTTTGGGG
Statistics
Matches: 184, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
25 10 0.05
26 47 0.26
27 125 0.68
28 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTTGGTA
Found at i:11280261 original size:80 final size:81
Alignment explanation
Indices: 11280126--11280334 Score: 273
Period size: 80 Copynumber: 2.6 Consensus size: 81
11280116 TATAACAGTT
* * *
11280126 ATTTTACCCTTCGAGGGTATTTTGGTAATTTTACCCTTTAGGGGTATTTTGGTAATTTTACTCTT
1 ATTTTACCCTTCGAAGGTATTTTGGTAATTTTACCCTTTAAGGGTATTTTGGTAATTTTACCCTT
*
11280191 CAAGGGTATTTT-GATA
66 CAAGGATATTTTAG-TA
** *
11280207 A-TTTACCCTTCGAAGGTATTTCAGTAATTTCACCCTTTAAGGGTATTTTGGTAATTTTACCCTT
1 ATTTTACCCTTCGAAGGTATTTTGGTAATTTTACCCTTTAAGGGTATTTTGGTAATTTTACCCTT
*
11280271 CGAGGATATTTTAGTA
66 CAAGGATATTTTAGTA
* * *
11280287 ATTTTACCCCTC-AAGGGTATTTTGGTCATTTTACCCTAT-AGGGTATTT
1 ATTTTACCCTTCGAA-GGTATTTTGGTAATTTTACCCTTTAAGGGTATTT
11280335 CGATCATTTA
Statistics
Matches: 111, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
80 81 0.73
81 30 0.27
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.44
Consensus pattern (81 bp):
ATTTTACCCTTCGAAGGTATTTTGGTAATTTTACCCTTTAAGGGTATTTTGGTAATTTTACCCTT
CAAGGATATTTTAGTA
Found at i:11280301 original size:107 final size:106
Alignment explanation
Indices: 11280128--11280373 Score: 302
Period size: 107 Copynumber: 2.3 Consensus size: 106
11280118 TAACAGTTAT
* * * * * *
11280128 TTTACCCTTCGAGGGTATTTTGGTAATTTTACCCTTTAGGGGTATTTTGGTAATTTTACTCTTCA
1 TTTACCCTTTGAGGGTATTTTGGTAATTTTACCCTTGAGGGATATTTTAGTAATTTTACCCCTCA
11280193 AGGGTATTTTGAT-AATTTACCCT-TCGAAGGTATTTCAGTAA
66 AGGGTATTTTGATCAATTTACCCTAT--AAGGTATTTCAGTAA
*
11280234 TTTCACCCTTTAAGGGTATTTTGGTAATTTTACCCTTCGA-GGATATTTTAGTAATTTTACCCCT
1 TTT-ACCCTTTGAGGGTATTTTGGTAATTTTACCCTT-GAGGGATATTTTAGTAATTTTACCCCT
* * * *
11280298 CAAGGGTATTTTGGTCATTTTACCCTATAGGGTATTTC-GATCA
64 CAAGGGTATTTTGATCAATTTACCCTATAAGGTATTTCAG-TAA
* *
11280341 TTTACCCTATGAGGGTATTTTGGTCATTTTACC
1 TTTACCCTTTGAGGGTATTTTGGTAATTTTACC
11280374 TTTTTTGGGG
Statistics
Matches: 121, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
106 31 0.26
107 79 0.65
108 10 0.08
109 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (106 bp):
TTTACCCTTTGAGGGTATTTTGGTAATTTTACCCTTGAGGGATATTTTAGTAATTTTACCCCTCA
AGGGTATTTTGATCAATTTACCCTATAAGGTATTTCAGTAA
Found at i:11284554 original size:20 final size:21
Alignment explanation
Indices: 11284531--11284570 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
11284521 TTTTATCAAA
11284531 TAATAAAATTAA-TTAAAATC
1 TAATAAAATTAATTTAAAATC
**
11284551 TAATCTAATTAATTTAAAAT
1 TAATAAAATTAATTTAAAAT
11284571 AGTTGGACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATAAAATTAATTTAAAATC
Found at i:11284857 original size:20 final size:21
Alignment explanation
Indices: 11284834--11284873 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
11284824 TTTTATCAAA
11284834 TAATAAAATTAA-TTAAAATC
1 TAATAAAATTAATTTAAAATC
**
11284854 TAATCTAATTAATTTAAAAT
1 TAATAAAATTAATTTAAAAT
11284874 AGTTGGACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATAAAATTAATTTAAAATC
Found at i:11287255 original size:45 final size:45
Alignment explanation
Indices: 11287191--11287282 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
11287181 TATTTTTTTT
11287191 ATTGATTACCATAATAATTACCGTACTTTCAGATAATACAATTCG
1 ATTGATTACCATAATAATTACCGTACTTTCAGATAATACAATTCG
11287236 ATTGATTACCATAATAATTACCGTACTTTCAGATAATACAATTCG
1 ATTGATTACCATAATAATTACCGTACTTTCAGATAATACAATTCG
11287281 AT
1 AT
11287283 CTTTCATTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (45 bp):
ATTGATTACCATAATAATTACCGTACTTTCAGATAATACAATTCG
Found at i:11287765 original size:6 final size:6
Alignment explanation
Indices: 11287754--11287782 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
11287744 AAGGCATATG
11287754 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
11287783 AATAGGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:11295344 original size:20 final size:20
Alignment explanation
Indices: 11295319--11295408 Score: 94
Period size: 20 Copynumber: 4.5 Consensus size: 20
11295309 ACAATTTTAA
*
11295319 AATCAAGTGAAAATAATTTT
1 AATCAAGTCAAAATAATTTT
*
11295339 AATCAAGTCAAAATAATTTC
1 AATCAAGTCAAAATAATTTT
* *
11295359 AATCAAGTTAAAATCATTTT
1 AATCAAGTCAAAATAATTTT
*
11295379 AAT-ATA-TCAAAATGATTTT
1 AATCA-AGTCAAAATAATTTT
*
11295398 CAAACAAGTCA
1 -AATCAAGTCA
11295409 GAATTGCTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
19 12 0.21
20 42 0.72
21 4 0.07
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (20 bp):
AATCAAGTCAAAATAATTTT
Found at i:11295363 original size:40 final size:40
Alignment explanation
Indices: 11295319--11295406 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
11295309 ACAATTTTAA
11295319 AATCAAGTGAAAATAATTTTAATCA-AGTCAAAAT-AATTTC
1 AATCAAGTGAAAATAATTTTAAT-ATA-TCAAAATGAATTTC
* * *
11295359 AATCAAGTTAAAATCATTTTAATATATCAAAATGATTTTC
1 AATCAAGTGAAAATAATTTTAATATATCAAAATGAATTTC
*
11295399 AAACAAGT
1 AATCAAGT
11295407 CAGAATTGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 8 0.19
40 34 0.81
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (40 bp):
AATCAAGTGAAAATAATTTTAATATATCAAAATGAATTTC
Found at i:11302214 original size:30 final size:30
Alignment explanation
Indices: 11302179--11302260 Score: 119
Period size: 30 Copynumber: 2.7 Consensus size: 30
11302169 AGCCTCGGCT
* * *
11302179 ATCAAATTATGAAAAGGGATTGTGACTACC
1 ATCAAATAATGAAAAGGGATGGTGACGACC
11302209 ATCAAATAATGAAAAGGGATGGTGACGACC
1 ATCAAATAATGAAAAGGGATGGTGACGACC
* *
11302239 ATCGAACAATGAAAAGGGATGG
1 ATCAAATAATGAAAAGGGATGG
11302261 CTTTAGCTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.43, C:0.12, G:0.26, T:0.20
Consensus pattern (30 bp):
ATCAAATAATGAAAAGGGATGGTGACGACC
Found at i:11319051 original size:31 final size:31
Alignment explanation
Indices: 11319016--11319078 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 31
11319006 AATGTATAAA
*
11319016 ATGTATGGAAT-TGAATCAAAA-TCAAAGTTTC
1 ATGTAT-GAATATAAATCAAAATTC-AAGTTTC
*
11319047 ATGTATGTATATAAATCAAAATTCAAGTTTC
1 ATGTATGAATATAAATCAAAATTCAAGTTTC
11319078 A
1 A
11319079 AGTACATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 3 0.11
31 23 0.82
32 2 0.07
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.35
Consensus pattern (31 bp):
ATGTATGAATATAAATCAAAATTCAAGTTTC
Found at i:11321537 original size:40 final size:40
Alignment explanation
Indices: 11321493--11321582 Score: 94
Period size: 41 Copynumber: 2.2 Consensus size: 40
11321483 TCCTAGAGGG
*
11321493 CGCGATTTCCTTCCACGT--CAGCAAATCGCGCTGACGTGGA
1 CGCGATTTCC-TCCACGTACCCG-AAATCGCGCTGACGTGGA
* * * *
11321533 CGCGAGTTCCTGCGCGTACCCTGACATCGCGCTGACGTGGA
1 CGCGATTTCCTCCACGTACCC-GAAATCGCGCTGACGTGGA
11321574 CGCGATTTC
1 CGCGATTTC
11321583 GCGGTAAATG
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
39 5 0.12
40 9 0.22
41 26 0.63
42 1 0.02
ACGTcount: A:0.17, C:0.33, G:0.28, T:0.22
Consensus pattern (40 bp):
CGCGATTTCCTCCACGTACCCGAAATCGCGCTGACGTGGA
Found at i:11321645 original size:29 final size:29
Alignment explanation
Indices: 11321592--11321653 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
11321582 CGCGGTAAAT
*
11321592 GGCCCATTCCGGTAAATAATTAAAAAACC
1 GGCCCATTCCGGTAAATAATTAAAAAAAC
* *
11321621 GGCCCATTTCGGTAAAT-TTTGAAAAAAAC
1 GGCCCATTCCGGTAAATAATT-AAAAAAAC
11321650 GGCC
1 GGCC
11321654 TTTTTTGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (29 bp):
GGCCCATTCCGGTAAATAATTAAAAAAAC
Found at i:11322394 original size:30 final size:29
Alignment explanation
Indices: 11322360--11322416 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
11322350 AAAAAGCCCT
11322360 TTTTTTCAA-AATTTACCGAAATGGGCCAC
1 TTTTTT-AATAATTTACCGAAATGGGCCAC
* *
11322389 TTTTTTAATTATTTACCGGAATGGGCCA
1 TTTTTTAATAATTTACCGAAATGGGCCA
11322417 ATTTCGTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (29 bp):
TTTTTTAATAATTTACCGAAATGGGCCAC
Found at i:11322650 original size:22 final size:22
Alignment explanation
Indices: 11322624--11322677 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
11322614 ACAAACGAAT
*
11322624 ATTCTCTTAATTTTCTTCCAAA
1 ATTCTCTTAATTTCCTTCCAAA
*
11322646 ATTCTCTCAATTTCCTTCCAAA
1 ATTCTCTTAATTTCCTTCCAAA
11322668 ATTCTCTTAA
1 ATTCTCTTAA
11322678 ACTCTCAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTCTCTTAATTTCCTTCCAAA
Found at i:11322718 original size:21 final size:22
Alignment explanation
Indices: 11322679--11322731 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
11322669 TTCTCTTAAA
11322679 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
11322701 CTCTCAATTTCCTTCAAAAAAT-
1 CTCTCAAATTCCTTC-CAAAATC
11322723 CTCTCAAAT
1 CTCTCAAAT
11322732 CCATATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:11322801 original size:29 final size:28
Alignment explanation
Indices: 11322763--11322820 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 28
11322753 ATTCAATTTC
11322763 ATTTTTTTAAGAA-AATTTCAAATATTTTT
1 ATTTTTTTAA-AATAATTTCAAA-ATTTTT
*
11322792 ATTTTTTTAAAATAATTTTAAAATTTTT
1 ATTTTTTTAAAATAATTTCAAAATTTTT
11322820 A
1 A
11322821 ATATTTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (28 bp):
ATTTTTTTAAAATAATTTCAAAATTTTT
Found at i:11322827 original size:29 final size:29
Alignment explanation
Indices: 11322766--11322827 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
11322756 CAATTTCATT
*
11322766 TTTTTAAGAAAATTTCAAATATTTTTATT
1 TTTTTAAGAAAATTTCAAATATTTTTATA
*
11322795 TTTTTAA-AATAATTTTAAA-ATTTTTAATA
1 TTTTTAAGAA-AATTTCAAATATTTTT-ATA
11322824 TTTT
1 TTTT
11322828 CAACAATGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (29 bp):
TTTTTAAGAAAATTTCAAATATTTTTATA
Found at i:11322947 original size:14 final size:15
Alignment explanation
Indices: 11322918--11322951 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11322908 AAAATTTAAA
11322918 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
11322933 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
11322947 TTTTA
1 TTTTA
11322952 GATAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:11323921 original size:7 final size:7
Alignment explanation
Indices: 11323909--11323933 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11323899 AGTGGATTGA
11323909 TATTTAG
1 TATTTAG
11323916 TATTTAG
1 TATTTAG
11323923 TATTTAG
1 TATTTAG
11323930 TATT
1 TATT
11323934 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:11325090 original size:125 final size:126
Alignment explanation
Indices: 11324866--11325147 Score: 405
Period size: 125 Copynumber: 2.3 Consensus size: 126
11324856 GAGCACCATC
* * *
11324866 GCGATTTGACACTATTTGCTCA-AAAACGTCAAAAAATAATTATTTCCTACATGACCAAATGTAG
1 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCCTACATGACCAAATGTAC
**
11324930 CGAAATCGCGTCCACGAGGGAGCGATTTCACAATTTCTTCTCAT-ATAGCATCCTGGTATCA
66 CGAAATCGCGTCCACGAGGGAGCGATTTCACAATTTCTTCT-ATGATAGCATCCTGGTAGAA
* * *
11324991 GTGATTTTATACTATTTGCTCAGAAAACGTCAAAAAA-AATTATTTCTTACATGACCAACTGTAC
1 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCCTACATGACCAAATGTAC
* *
11325055 CGAAATCGCGTCCACGAGGGCA-CGATTTCACAATTTCTTCTTTGATAGCATCTTGGTAGAA
66 CGAAATCGCGTCCACGAGGG-AGCGATTTCACAATTTCTTCTATGATAGCATCCTGGTAGAA
11325116 GCGATTTTATACTATTTGACT-AG-AAACGTCAA
1 GCGATTTTATACTATTTG-CTCAGAAAACGTCAA
11325148 CTCGAAATAA
Statistics
Matches: 142, Mismatches: 11, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
124 10 0.07
125 115 0.81
126 17 0.12
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (126 bp):
GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCCTACATGACCAAATGTAC
CGAAATCGCGTCCACGAGGGAGCGATTTCACAATTTCTTCTATGATAGCATCCTGGTAGAA
Found at i:11326172 original size:15 final size:15
Alignment explanation
Indices: 11326152--11326181 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11326142 TAGTCCCTAT
11326152 TTGTTATTATTATTA
1 TTGTTATTATTATTA
11326167 TTGTTATTATTATTA
1 TTGTTATTATTATTA
11326182 CTATATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TTGTTATTATTATTA
Found at i:11326344 original size:17 final size:17
Alignment explanation
Indices: 11326311--11326345 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
11326301 TATGTACATA
* *
11326311 TATATACATTTATATTT
1 TATATACATATACATTT
11326328 TATATACATATACATTT
1 TATATACATATACATTT
11326345 T
1 T
11326346 GTAACACATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:11328084 original size:16 final size:16
Alignment explanation
Indices: 11328059--11328093 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11328049 GTGTGTTTTG
*
11328059 TTTTGGCTGCATGACA
1 TTTTGACTGCATGACA
*
11328075 TTTTGACTGCATGGCA
1 TTTTGACTGCATGACA
11328091 TTT
1 TTT
11328094 CATCATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:11328543 original size:19 final size:19
Alignment explanation
Indices: 11328519--11328565 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
11328509 AACGTCTCTT
*
11328519 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
11328538 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
11328557 TATGCATTA
1 TTTGCATTA
11328566 AACACTGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:11328627 original size:4 final size:4
Alignment explanation
Indices: 11328618--11328643 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
11328608 TTAACCTGGA
11328618 AACC AACC AACC AACC AACC AACC AA
1 AACC AACC AACC AACC AACC AACC AA
11328644 ACACCGTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.54, C:0.46, G:0.00, T:0.00
Consensus pattern (4 bp):
AACC
Found at i:11330861 original size:102 final size:102
Alignment explanation
Indices: 11330706--11331038 Score: 567
Period size: 102 Copynumber: 3.3 Consensus size: 102
11330696 CCAGTGATTC
* * * *
11330706 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
* *
11330771 CCAATGAGTCGGGAAATCAGCACTTAGCAACCCCTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
* *
11330808 GGGGAATCAACACTTAACAACCCCCTTCACATTTAAAATACGGTGCAATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
*
11330873 CCAATGATTCGGGGAATCAGCACTTAGCAACCCTTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
11330910 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
* *
11330975 CCAATGATTCGGGGAATCAACACTGAGCAACCCCTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
11331012 GGGGAATCAACACTTAGCAACCCCCTT
1 GGGGAATCAACACTTAGCAACCCCCTT
11331039 TATATTCAAT
Statistics
Matches: 217, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 217 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (102 bp):
GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:11338252 original size:33 final size:33
Alignment explanation
Indices: 11338210--11338436 Score: 153
Period size: 33 Copynumber: 6.5 Consensus size: 33
11338200 ATATCAAGGG
11338210 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* *
11338243 GGTTGCTAAGTGCTGATTCCACC-ATATTTTAAATGTGAAGGA
1 GGTTGCTAAGTGCTGATTCC-CCGA-A---T-CAT-T---GGT
* *
11338285 GGTTGCTAAGTACTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
11338312 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
11338345 GGTTGCTAAGTGATGATTCCACCGAATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCGAA---T-CAT-T---GGT
*
11338387 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
11338420 GGTTGCTAAGTACTGAT
1 GGTTGCTAAGTGCTGAT
11338437 CCCACAGTAT
Statistics
Matches: 154, Mismatches: 15, Indels: 50
0.70 0.07 0.23
Matches are distributed among these distances:
27 21 0.14
28 2 0.01
31 2 0.01
32 2 0.01
33 59 0.38
34 8 0.05
36 1 0.01
37 4 0.03
38 5 0.03
39 2 0.01
41 6 0.04
42 42 0.27
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:11338319 original size:27 final size:28
Alignment explanation
Indices: 11338280--11338333 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
11338270 TTTAAATGTG
11338280 AAGGAGGTTGCTAAGTACTGATTCCCCC
1 AAGGAGGTTGCTAAGTACTGATTCCCCC
*
11338308 AAGG-GGTTGCTAAGTGCTGATTCCCC
1 AAGGAGGTTGCTAAGTACTGATTCCCC
11338334 GAATCATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (28 bp):
AAGGAGGTTGCTAAGTACTGATTCCCCC
Found at i:11338322 original size:102 final size:102
Alignment explanation
Indices: 11338208--11338408 Score: 359
Period size: 102 Copynumber: 2.0 Consensus size: 102
11338198 GAATATCAAG
*
11338208 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACC-ATATTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGATGATTCCACCGA-ATTT
11338272 TAAATGTGAAGGAGGTTGCTAAGTACTGATTCCCCCAA
65 TAAATGTGAAGGAGGTTGCTAAGTACTGATTCCCCCAA
11338310 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGATGATTCCACCGAATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGATGATTCCACCGAATTTT
* *
11338375 AAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCC
66 AAATGTGAAGGAGGTTGCTAAGTACTGATTCCCC
11338409 GACTCATTGG
Statistics
Matches: 95, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
102 94 0.99
103 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (102 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGATGATTCCACCGAATTTT
AAATGTGAAGGAGGTTGCTAAGTACTGATTCCCCCAA
Found at i:11338452 original size:75 final size:75
Alignment explanation
Indices: 11338308--11338510 Score: 291
Period size: 75 Copynumber: 2.7 Consensus size: 75
11338298 TGATTCCCCC
* *
11338308 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGA-TGATTCCACCGAAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGT-ACTGATCCCACAGAAT
*
11338372 TTTAAATGTGA
65 CTTAAATGTGA
* * *
11338383 AGGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTACTGATCCCACAGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTACTGATCCCACAGAATC
11338448 TTAAATGTGA
66 TTAAATGTGA
* * * * *
11338458 AAGGGGTTGCTAAGTGTTGATTCCTCGAATCACTGGAGGTTGCTAAGTGCTGA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTACTGA
11338511 ATCCACTGAT
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
74 1 0.01
75 113 0.99
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTACTGATCCCACAGAATC
TTAAATGTGA
Found at i:11343470 original size:45 final size:45
Alignment explanation
Indices: 11342913--11343469 Score: 727
Period size: 45 Copynumber: 12.4 Consensus size: 45
11342903 GTTGAAAAAC
*
11342913 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* * *
11342958 AGTAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* * ** **
11343003 AACGGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* *
11343048 AGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* * ** *
11343093 AACGGATCTTGTCTTCCTGTACTGGTAGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* *
11343138 TGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* * *
11343183 AACGGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* * * ** *
11343228 AACATATTTTGTCTTCCTGTACTGGTAGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* *
11343273 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* * ** **
11343318 AACGGATCTTGTCTTCCTGTACTGGCCGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
*
11343363 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
* * * * *
11343408 AACAGATCTTGTTTTCCTATATTGGTAGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
*
11343453 AGCAGATTTTGTCTTCC
1 AGCAGATCTTGTCTTCC
11343470 TGTATCGGCA
Statistics
Matches: 435, Mismatches: 77, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 435 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
Found at i:11344222 original size:3 final size:3
Alignment explanation
Indices: 11344214--11344249 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
11344204 TCCCTATTTG
* *
11344214 TTA TTA TTA TTG TTA TTA TTG TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11344250 CTATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:11344413 original size:17 final size:17
Alignment explanation
Indices: 11344380--11344414 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
11344370 TATACACATA
* *
11344380 TATATACATTTATATTT
1 TATATACATATACATTT
11344397 TATATACATATACATTT
1 TATATACATATACATTT
11344414 T
1 T
11344415 GTAACACATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:11351690 original size:29 final size:29
Alignment explanation
Indices: 11351648--11351710 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
11351638 AATAGATGAA
11351648 AATTTTTACAAAAAATTAATTATTATTTT
1 AATTTTTACAAAAAATTAATTATTATTTT
11351677 AATTTTTACAAAAAATTAATTATTATTTT
1 AATTTTTACAAAAAATTAATTATTATTTT
*
11351706 TATTT
1 AATTT
11351711 AATGTATACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (29 bp):
AATTTTTACAAAAAATTAATTATTATTTT
Found at i:11352150 original size:17 final size:17
Alignment explanation
Indices: 11352112--11352148 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
11352102 AAAAAGTATA
*
11352112 TAAATTAATTTTTTAAT
1 TAAATTAAATTTTTAAT
11352129 TAAATTAAATTTTT-AT
1 TAAATTAAATTTTTAAT
11352145 TAAA
1 TAAA
11352149 ATCATCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAATTAAATTTTTAAT
Found at i:11352454 original size:15 final size:16
Alignment explanation
Indices: 11352427--11352456 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11352417 TAATAGTATA
11352427 AATAAATAAAAAATTT
1 AATAAATAAAAAATTT
11352443 AATAAA-AAAAAATT
1 AATAAATAAAAAATT
11352457 AATTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AATAAATAAAAAATTT
Found at i:11358242 original size:15 final size:15
Alignment explanation
Indices: 11358193--11358243 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
11358183 GTAAGACGGA
11358193 AATTTAA-ATTTTGTT
1 AATTTAATATTTT-TT
* * *
11358208 AATTTCAATAATGTTA
1 AATTT-AATATTTTTT
11358224 AATTTAATATTTTTT
1 AATTTAATATTTTTT
11358239 AATTT
1 AATTT
11358244 GAAATTATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 17 0.61
16 8 0.29
17 3 0.11
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (15 bp):
AATTTAATATTTTTT
Found at i:11361821 original size:15 final size:16
Alignment explanation
Indices: 11361801--11361833 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
11361791 AATATGTTAA
11361801 CACATAATTCAT-ATT
1 CACATAATTCATAATT
11361816 CACATAATTCATAATT
1 CACATAATTCATAATT
11361832 CA
1 CA
11361834 AATACGTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.36
Consensus pattern (16 bp):
CACATAATTCATAATT
Found at i:11362067 original size:43 final size:43
Alignment explanation
Indices: 11361966--11362089 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
11361956 GGCTCGTACA
* * * *
11361966 ATGCCAACGTCTCAGATGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAACACAAATCG
*
11362009 ATGCC-ACTGTTCCAGATAG-GGTCTTACACGTAAACACAAATCG
1 ATGCCAAC-GTCCCAGAT-GTGGTCTTACACGTAAACACAAATCG
* *
11362052 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACA
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAACACA
11362090 TATTGAAAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
42 3 0.04
43 63 0.91
44 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGTAAACACAAATCG
Found at i:11362290 original size:22 final size:20
Alignment explanation
Indices: 11362246--11362287 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
11362236 AAACAATTCA
11362246 ATTTATCACATAACATATAT
1 ATTTATCACATAACATATAT
11362266 ATTTATCACATAACATATAT
1 ATTTATCACATAACATATAT
11362286 AT
1 AT
11362288 ATTCTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTATCACATAACATATAT
Found at i:11364580 original size:18 final size:19
Alignment explanation
Indices: 11364557--11364594 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
11364547 GAAAAACCTA
*
11364557 ATGCTTCAAATA-ATTTAG
1 ATGCTTCAAACACATTTAG
*
11364575 ATGCTTTAAACACATTTAG
1 ATGCTTCAAACACATTTAG
11364594 A
1 A
11364595 ATATGTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (19 bp):
ATGCTTCAAACACATTTAG
Found at i:11376560 original size:21 final size:22
Alignment explanation
Indices: 11376510--11376561 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
11376500 AAAGAAAAAC
* * *
11376510 CCTTACACCCATCACATCCTAA
1 CCTTTCACCCATCAAATCCAAA
11376532 CCTTTCACCCATCAAAT-CAAA
1 CCTTTCACCCATCAAATCCAAA
*
11376553 CTTTTCACC
1 CCTTTCACC
11376562 TAGAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.31, C:0.42, G:0.00, T:0.27
Consensus pattern (22 bp):
CCTTTCACCCATCAAATCCAAA
Found at i:11376670 original size:22 final size:22
Alignment explanation
Indices: 11376642--11376691 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
11376632 TCAAAACAAA
11376642 AACCTTTCACCCATCAAATCCT
1 AACCTTTCACCCATCAAATCCT
*
11376664 AACCTTTCACCCATCACATCCT
1 AACCTTTCACCCATCAAATCCT
*
11376686 AGCCTT
1 AACCTT
11376692 CTCTTTACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.28, C:0.42, G:0.02, T:0.28
Consensus pattern (22 bp):
AACCTTTCACCCATCAAATCCT
Found at i:11382699 original size:69 final size:69
Alignment explanation
Indices: 11382576--11382736 Score: 216
Period size: 69 Copynumber: 2.3 Consensus size: 69
11382566 ATAGTCCGTC
* * * *
11382576 GGGATAGTAAACACAAGGATTACGAGGTGTAAGATCATAGCTCAACTATGGCAACCAATGGAGTC
1 GGGACAGTAAACACAAGGATTACGAGGTGTAAGATCATAACTCAACAATAGCAACCAATGGAGTC
*
11382641 TTTT
66 TATT
** * *
11382645 GGGACAGTAAACACAAGGATTGTGATGTGTAAG-TCCATAACTCGACAATAGCAACCAATGGAGT
1 GGGACAGTAAACACAAGGATTACGAGGTGTAAGAT-CATAACTCAACAATAGCAACCAATGGAGT
11382709 CTATT
65 CTATT
*
11382714 GGGACAGTAAACACAGGGATTAC
1 GGGACAGTAAACACAAGGATTAC
11382737 TATAATAGCC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
68 1 0.01
69 78 0.99
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (69 bp):
GGGACAGTAAACACAAGGATTACGAGGTGTAAGATCATAACTCAACAATAGCAACCAATGGAGTC
TATT
Found at i:11383800 original size:33 final size:33
Alignment explanation
Indices: 11383758--11383822 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
11383748 TTAGCCTTGA
11383758 TAAGTTCATACGATATTATTTTTGTGTATTTTT
1 TAAGTTCATACGATATTATTTTTGTGTATTTTT
*
11383791 TAAGTTCATATGATATTATTTTTGTGTATTTT
1 TAAGTTCATACGATATTATTTTTGTGTATTTT
11383823 GATAATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.05, G:0.12, T:0.58
Consensus pattern (33 bp):
TAAGTTCATACGATATTATTTTTGTGTATTTTT
Found at i:11385519 original size:23 final size:26
Alignment explanation
Indices: 11385469--11385523 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
11385459 GAAAAATAAC
*
11385469 ATATGAAACAGTTTTAAAGAATATAT
1 ATATGAAACAGTTTGAAAGAATATAT
11385495 ATATGAAA-A-TTTGAAAGATATATAT
1 ATATGAAACAGTTTGAAAGA-ATATAT
11385520 ATAT
1 ATAT
11385524 AATAATTTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 8 0.30
25 11 0.41
26 8 0.30
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (26 bp):
ATATGAAACAGTTTGAAAGAATATAT
Found at i:11385523 original size:25 final size:24
Alignment explanation
Indices: 11385469--11385532 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 24
11385459 GAAAAATAAC
*
11385469 ATATGAAACAGTTTTAAAGAATATAT
1 ATATGAAA-A-TTTGAAAGAATATAT
11385495 ATATGAAAATTTGAAAGATATATAT
1 ATATGAAAATTTGAAAGA-ATATAT
11385520 ATAT-AATAATTTG
1 ATATGAA-AATTTG
11385533 CAATAAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
24 10 0.29
25 17 0.49
26 8 0.23
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (24 bp):
ATATGAAAATTTGAAAGAATATAT
Found at i:11386012 original size:25 final size:25
Alignment explanation
Indices: 11385970--11386036 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
11385960 TTTTTATCAA
11385970 AAAAAATAAAAATAATAAAGAAAGG
1 AAAAAATAAAAATAATAAAGAAAGG
* *
11385995 AAAAAATATAAAAT-ATAAATAAAGT
1 AAAAAATA-AAAATAATAAAGAAAGG
11386020 AAAAAGATAACAAATAA
1 AAAAA-ATAA-AAATAA
11386037 GTAGCTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 23 0.64
26 12 0.33
27 1 0.03
ACGTcount: A:0.75, C:0.01, G:0.07, T:0.16
Consensus pattern (25 bp):
AAAAAATAAAAATAATAAAGAAAGG
Found at i:11389857 original size:50 final size:50
Alignment explanation
Indices: 11389742--11389934 Score: 287
Period size: 50 Copynumber: 3.8 Consensus size: 50
11389732 AATAATAATA
* * * ** *
11389742 TGCCAAAGCCATGTCCCAGACATGGTCTTACATAGAATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
11389793 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
11389843 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
11389893 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
11389935 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 98 0.76
51 31 0.24
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:11392367 original size:9 final size:9
Alignment explanation
Indices: 11392353--11392385 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
11392343 AACTCTTTTA
11392353 TTATTTATT
1 TTATTTATT
11392362 TTATTTATT
1 TTATTTATT
11392371 TTATATTA-T
1 TTAT-TTATT
11392380 TTATTT
1 TTATTT
11392386 TAAACTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 18 0.78
10 3 0.13
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTTATT
Found at i:11392377 original size:23 final size:24
Alignment explanation
Indices: 11392351--11392591 Score: 113
Period size: 28 Copynumber: 9.6 Consensus size: 24
11392341 AAAACTCTTT
11392351 TATTATTTATTTT-ATTTATTTTA
1 TATTATTTATTTTAATTTATTTTA
** *
11392374 TATTATTTATTTTAAACTGTTTTACA
1 TATTATTTATTTTAATTTATTTT--A
*
11392400 TATTATTTATTTTAATTTTTTTCTCATA
1 TATTATTTATTTTAA-TTTATT-T--TA
** *
11392428 TATTATTTATTTTAAACTATTATA
1 TATTATTTATTTTAATTTATTTTA
*
11392452 TATATATGTTATCTTTTAAATTT-TTATA
1 TAT-TAT-TTA--TTTT-AATTTATTTTA
* * *
11392480 TATTATTT-TTTAAAAATTGTTTTA
1 TATTATTTATTT-TAATTTATTTTA
*
11392504 TTATTACTTATTTTAAGTTT-TTTTA
1 -TATTATTTATTTTAA-TTTATTTTA
* *
11392529 TATATTTTTATTTGAA---ACTTTT-
1 TAT-TATTTATTTTAATTTA-TTTTA
11392551 TATTATTTATTTTGAATTGT-TTTTA
1 TATTATTTATTTT-AATT-TATTTTA
11392576 TAAATTATTTATTTTA
1 T--ATTATTTATTTTA
11392592 TATTGTTGTA
Statistics
Matches: 167, Mismatches: 23, Indels: 53
0.69 0.09 0.22
Matches are distributed among these distances:
21 8 0.05
22 5 0.03
23 24 0.14
24 22 0.13
25 27 0.16
26 27 0.16
27 21 0.13
28 29 0.17
29 3 0.02
30 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (24 bp):
TATTATTTATTTTAATTTATTTTA
Found at i:11392379 original size:14 final size:14
Alignment explanation
Indices: 11392356--11392441 Score: 56
Period size: 14 Copynumber: 6.3 Consensus size: 14
11392346 TCTTTTATTA
*
11392356 TTTATTTTATTTAT
1 TTTATATTATTTAT
11392370 TTTATATTATTTAT
1 TTTATATTATTTAT
* * *
11392384 TTTAAACT-GTT-T
1 TTTATATTATTTAT
**
11392396 TACATATTATTTAT
1 TTTATATTATTTAT
11392410 TTTA-ATT-TTT-T
1 TTTATATTATTTAT
11392421 TCTCATATATTATTTAT
1 T-T--TATATTATTTAT
11392438 TTTA
1 TTTA
11392442 AACTATTATA
Statistics
Matches: 53, Mismatches: 11, Indels: 16
0.66 0.14 0.20
Matches are distributed among these distances:
11 2 0.04
12 9 0.17
13 7 0.13
14 26 0.49
15 3 0.06
16 4 0.08
17 2 0.04
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (14 bp):
TTTATATTATTTAT
Found at i:11392439 original size:28 final size:26
Alignment explanation
Indices: 11392372--11392611 Score: 169
Period size: 26 Copynumber: 9.4 Consensus size: 26
11392362 TTATTTATTT
11392372 TATATTATTTATTTTAAACTGTTTTA
1 TATATTATTTATTTTAAACTGTTTTA
* ** *
11392398 CATATTATTTATTTTAATTTTTTTCTCA
1 TATATTATTTATTTTAAACTGTTT-T-A
* *
11392426 TATATTATTTATTTTAAACTATTATA
1 TATATTATTTATTTTAAACTGTTTTA
11392452 TATA-TATGTTATCTTTTAAA-T-TTTTA
1 TATATTAT-TTA--TTTTAAACTGTTTTA
* *
11392478 TATATTATTT-TTTAAAAATTGTTTTA
1 TATATTATTTATTT-TAAACTGTTTTA
* ** *
11392504 T-TATTACTTATTTTAAGTTTTTTTA
1 TATATTATTTATTTTAAACTGTTTTA
*
11392529 TATATT-TTTATTTGAAAC---TTT-
1 TATATTATTTATTTTAAACTGTTTTA
* *
11392550 T-TATTATTTATTTTGAATTGTTTTTA
1 TATATTATTTATTTTAAACTG-TTTTA
* * * *
11392576 TAAATTATTTATTTTATATTGTTGTA
1 TATATTATTTATTTTAAACTGTTTTA
11392602 TATATTATTT
1 TATATTATTT
11392612 TGTTTTGTTT
Statistics
Matches: 169, Mismatches: 27, Indels: 36
0.73 0.12 0.16
Matches are distributed among these distances:
20 4 0.02
21 10 0.06
22 3 0.02
23 3 0.02
24 3 0.02
25 32 0.19
26 65 0.38
27 22 0.13
28 27 0.16
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (26 bp):
TATATTATTTATTTTAAACTGTTTTA
Found at i:11392552 original size:49 final size:50
Alignment explanation
Indices: 11392350--11392611 Score: 220
Period size: 54 Copynumber: 5.2 Consensus size: 50
11392340 AAAAACTCTT
*
11392350 TTATTATTTATTTT-ATTTATTT-TATATTATTTATTTTAAACTGTTTTA
1 TTATTATTTATTTTAATTTTTTTATATATTATTTATTTTAAACTGTTTTA
* * *
11392398 CATATTATTTATTTTAATTTTTTTCTCATATATTATTTATTTTAAACTATTATA
1 -TTATTATTTATTTTAA-TTTTTT-T-ATATATTATTTATTTTAAACTGTTTTA
* * *
11392452 -TATATATGTTATCTTTTAA-ATTTTTATATATTATTT-TTTAAAAATTGTTTTA
1 TTAT-TAT-TTA--TTTTAATTTTTTTATATATTATTTATTT-TAAACTGTTTTA
* *
11392504 TTATTACTTATTTTAAGTTTTTTTATATATT-TTTATTTGAAAC---TTT-
1 TTATTATTTATTTTAA-TTTTTTTATATATTATTTATTTTAAACTGTTTTA
* * * *
11392550 TTATTATTTATTTTGAATTGTTTTTATAAATTATTTATTTTATATTGTTGTA
1 TTATTATTTATTTT-AATT-TTTTTATATATTATTTATTTTAAACTGTTTTA
11392602 TATATTATTT
1 T-TATTATTT
11392612 TGTTTTGTTT
Statistics
Matches: 172, Mismatches: 19, Indels: 40
0.74 0.08 0.17
Matches are distributed among these distances:
46 15 0.09
47 16 0.09
48 9 0.05
49 19 0.11
50 7 0.04
51 28 0.16
52 26 0.15
53 15 0.09
54 31 0.18
56 6 0.03
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (50 bp):
TTATTATTTATTTTAATTTTTTTATATATTATTTATTTTAAACTGTTTTA
Found at i:11392573 original size:22 final size:22
Alignment explanation
Indices: 11392494--11392573 Score: 56
Period size: 24 Copynumber: 3.4 Consensus size: 22
11392484 ATTTTTTAAA
11392494 AATTGTTTTATTATTACTTATTTT-
1 AATTGTTTTATTA-T--TTATTTTG
* *
11392518 AAGTTTTTTTATATATTTTTATTTG
1 AA-TTGTTTTAT-TATTTAT-TTTG
*
11392543 AAACT-TTTTATTATTTATTTTG
1 -AATTGTTTTATTATTTATTTTG
11392565 AATTGTTTT
1 AATTGTTTT
11392574 TATAAATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
21 3 0.07
22 8 0.18
23 9 0.20
24 11 0.24
25 10 0.22
26 4 0.09
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.66
Consensus pattern (22 bp):
AATTGTTTTATTATTTATTTTG
Found at i:11392582 original size:27 final size:26
Alignment explanation
Indices: 11392552--11392611 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
11392542 GAAACTTTTT
*
11392552 ATTATTTATTTTGA-ATTGTTTTTATAA
1 ATTATTTATTTT-ATATTG-TTGTATAA
*
11392579 ATTATTTATTTTATATTGTTGTATAT
1 ATTATTTATTTTATATTGTTGTATAA
11392605 ATTATTT
1 ATTATTT
11392612 TGTTTTGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (26 bp):
ATTATTTATTTTATATTGTTGTATAA
Found at i:11395617 original size:44 final size:44
Alignment explanation
Indices: 11395554--11396408 Score: 216
Period size: 44 Copynumber: 18.9 Consensus size: 44
11395544 CATTATGGTG
* *
11395554 AATCTTATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAGCCACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * **
11395598 AATCTTATCCCCCTAAAGTTGTAGTGG-GCCAGATTGAAGTTACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAG-CAGATTAAAGCCACT
* * * ** *
11395642 AGTCTTATCTCCCTGAAA-TTGCAGTGGAGCAGACTAAAGATAGCG
1 AATCTTATCTCCCT-AAAGTTGTAGTGGAGCAGATTAAAGCCA-CT
* * * * * * * *
11395687 AATCTTATTTCCTTGAAGTTGTAGTGGAACTGATTGAAGCTATAAATT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGC----CACT
* * * * ** * *
11395735 GCAGATCTTATCTCTCTGAAGTTGCAGTAGAATAGATCATAG-CA--
1 --A-ATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * ** * * **
11395779 AACCTTATCTCCCTGAAGTTGCAGTAAAGCAGGTTGAAGTTAC-
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * ** * * *
11395822 AAGTCTTATCTTCTTGAAGTTGCAGCAGAGCAGACTAAAGACAGCG
1 AA-TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCA-CT
* * * * * * *
11395868 AATCTTATTTCCCTGAAGTTGCAATGGAACAGATTGAAGCTACAAGTTGCA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGC--C-A----CT
* * * * * ** *
11395919 AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * ** * * ** * *
11395963 AATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACA
1 AA-TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* ** * * * ** *
11396008 AACCTCT-TCTCCCTGAAA-TTACATTAGAGTAGATCGAAGACAC-
1 AATCT-TATCTCCCT-AAAGTTGTAGTGGAGCAGATTAAAGCCACT
** * ** *
11396051 AATCCTTATCTCCCGGAAGTTGTAGTGGAGCAGGATAAAAATACACA
1 AAT-CTTATCTCCCTAAAGTTGTAGTGGAGCA-GAT-TAAAGCCACT
* * * * * ***
11396098 AAACTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATT--AAAGCCACT
* * * * * *
11396144 AATCTTTTCTCCCTAAAGTTGCAGTAGAGCAAATTGAAGACAGGCTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATT--A-A-A-GCCACT
* * * * *
11396193 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * *
11396237 AATCTCATCTTCCTGAAGTTGTAGTGGAGCATATTAAAGCCACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * * ** *
11396281 AACCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATACC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * *
11396325 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCTACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * *
11396369 AATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATAAAAGC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGC
11396409 GACAAATCCT
Statistics
Matches: 617, Mismatches: 157, Indels: 74
0.73 0.19 0.09
Matches are distributed among these distances:
41 29 0.05
42 2 0.00
43 8 0.01
44 293 0.47
45 105 0.17
46 72 0.12
47 5 0.01
48 3 0.00
49 35 0.06
50 1 0.00
51 64 0.10
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
Found at i:11395725 original size:89 final size:89
Alignment explanation
Indices: 11395556--11396405 Score: 292
Period size: 88 Copynumber: 9.4 Consensus size: 89
11395546 TTATGGTGAA
* * * * * * *
11395556 TCTTATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAGCCA-CTAATCTTATCCCCCTAAAGTTGT
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
**
11395620 AGTGGGCCAGATTGAAGTTACTAG
66 AGTGGAACAGATTGAAGTTACTAG
* * * * * *
11395644 TCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCTTGAAGTTGT
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
* *
11395709 AGTGGAACTGATTGAAGCTATAAATTGCAG
66 AGTGGAACAGATTGAAG-T-T--ACT--AG
* * ** * * *
11395739 ATCTTATCTCTCTGAAGTTGCA--GTAG-A-A-TAGATCATAGCAAACCTTATCTCCCTGAAGTT
1 -TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTA-AAGACAGCGAATCTTATCTCCCTGAAGTT
* * *
11395799 GCAGT-AAAGCAGGTTGAAGTTACAAG
64 GCAGTGGAA-CAGATTGAAGTTACTAG
* * * *
11395825 TCTTATCTTCTTGAAGTTGCAGCAGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
* * *
11395890 AATGGAACAGATTGAAGCTACAAG
66 AGTGGAACAGATTGAAGTTACTAG
* ** * ** * *
11395914 TTGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CCAATTCTTATCTCCTT
1 -T------CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAA-TCTTATCTCCCT
* * ** * * * *
11395978 GAAGTTCCAGCGGAGTAGATCGAAGCTACAAA
58 GAAGTTGCAGTGGAACAGATTGAAGTTACTAG
* * * *** * * *
11396010 CCTCT-TCTCCCTGAAATTACATTAGAGTAGA-TCGAAGACA-C-AATCCTTATCTCCCGGAAGT
1 TCT-TATCTCCCTGAAGTTGCAGCGGAGCAGACT-AAAGACAGCGAAT-CTTATCTCCCTGAAGT
* * ** * * * *
11396071 TGTAGTGGAGCAGGATAAAAATACACAAA
63 TGCAGTGGAACA-GATTGAAGT-TACTAG
* * * ** * * * * * *
11396100 ACTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACTAATCTTTTCTCCCTAAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGA-CAGCGAATCTTATCTCCCTGAAGTTG
* * * * * *
11396165 CAGTAGAGCAAATTGAAGACAGGCTACAAA
65 CAGTGGAACAGATT---GA-A-GTTACTAG
* * * * * *
11396195 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAA-ACCA-CAAATCTCATCTTCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGA-CAGCGAATCTTATCTCCCTGAAGTTG
* * * * ** * *
11396258 TAGTGGAGCATATTAAAGCCACAAA
65 CAGTGGAACAGATTGAAGTTACTAG
* * * * ** * * * *
11396283 CCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA-CCAATCTTATCTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
** * *
11396347 AGTGGAGTAGATTGAAGCTACTAA
66 AGTGGAACAGATTGAAGTTACTAG
* * *
11396371 TCCTATCTCCTTGAAGTTGCAGTGGAGCAGA-TAAA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAA
11396406 AGCGACAAAT
Statistics
Matches: 576, Mismatches: 146, Indels: 81
0.72 0.18 0.10
Matches are distributed among these distances:
85 18 0.03
86 2 0.00
87 6 0.01
88 162 0.28
89 112 0.19
90 38 0.07
91 10 0.02
92 60 0.10
93 35 0.06
94 6 0.01
95 43 0.07
96 84 0.15
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
AGTGGAACAGATTGAAGTTACTAG
Found at i:11396116 original size:46 final size:45
Alignment explanation
Indices: 11395917--11396406 Score: 248
Period size: 44 Copynumber: 10.9 Consensus size: 45
11395907 CTACAAGTTG
* * * **
11395917 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * * * * ** *
11395962 CAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGAT-CGAA-GCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATAC-A
* * * * * * ** *
11396006 CAAACCTCT-TCTCCCTGAAATTACATTAGAGTAGAT-CGAAGACA
1 CAAATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
* *
11396050 C-AATCCTTATCTCCCGGAAGTTGTAGTGGAGCAGGATAAAAATACA
1 CAAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * * *
11396096 CAAAACTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * * * * * **
11396142 CTAATCTTTTCTCCCTAAAGTTGCAGTAGAGCAAATTGAAGACAGGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T-AA-AAATAC-A
* * *
11396191 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAA-CCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
* * * * * **
11396235 CAAATCTCATCTTCCTGAAGTTGTAGTGGAGCATAT-TAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
* * * * * *
11396279 CAAACCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATAC-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * ** *
11396324 C-AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGAT-TGAA-GCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATAC-A
* * *
11396367 CTAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATAAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAA
11396407 GCGACAAATC
Statistics
Matches: 339, Mismatches: 86, Indels: 40
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.00
42 2 0.01
43 9 0.03
44 176 0.52
45 36 0.11
46 75 0.22
47 5 0.01
48 3 0.01
49 32 0.09
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (45 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
Found at i:11396417 original size:44 final size:43
Alignment explanation
Indices: 11396190--11396437 Score: 223
Period size: 44 Copynumber: 5.6 Consensus size: 43
11396180 AAGACAGGCT
* * *
11396190 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACC
1 ACAAATCCTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* *
11396234 ACAAAT-CTCATCTTCCTGAAGTTGTAGTGGAGCATATTAAAGCC
1 ACAAATCCT-ATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* * * **
11396278 ACAAA-CCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGAT
1 ACAAATCC-TATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* * * * * *
11396322 ACCAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCT
1 ACAAATCCTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* * *
11396366 ACTAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATAAAAGCG
1 ACAAATCCTATCTCC-TGAAGTTGCAGTGGAGCAGATTAAAGCC
11396410 ACAAATCCTATAC-CTCTGAAGTTGCAGT
1 ACAAATCCTAT-CTC-CTGAAGTTGCAGT
11396438 AGGTTAGATT
Statistics
Matches: 171, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
43 4 0.02
44 162 0.95
45 5 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (43 bp):
ACAAATCCTATCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
Found at i:11396429 original size:132 final size:132
Alignment explanation
Indices: 11396193--11396433 Score: 310
Period size: 132 Copynumber: 1.8 Consensus size: 132
11396183 ACAGGCTACA
*
11396193 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTCATCTTCCTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTCATCTTCCTGAAGTTG
* * * *
11396258 TAGTGGAGCATATTAAAGCCACAAACCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA
66 CAGTGGAGCAGATAAAAGCCACAAACCTTATCCTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA
11396323 CC
131 CC
* * * * * *
11396325 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCTACTAATC-CTATC-TCCTTGAAGT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTC-ATCTTCC-TGAAGT
*
11396388 TGCAGTGGAGCAGATAAAAGCGACAAATCC-TATACCT-CTGAAGTTG
64 TGCAGTGGAGCAGATAAAAGCCACAAA-CCTTAT-CCTCCTGAAGTTG
11396434 CAGTAGGTTA
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
131 4 0.04
132 85 0.91
133 4 0.04
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (132 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTCATCTTCCTGAAGTTG
CAGTGGAGCAGATAAAAGCCACAAACCTTATCCTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA
CC
Found at i:11398087 original size:49 final size:51
Alignment explanation
Indices: 11398001--11398188 Score: 172
Period size: 54 Copynumber: 3.6 Consensus size: 51
11397991 TCCATTTAAT
* *
11398001 TTATTTATTTAATAAAACTCTTTTAT-TATTATTTATTTTAAGTTTTT-TATA
1 TTATTTATTT-AT-AAACTGTTTTATATATTATTTATTTTAAATTTTTATATA
* *
11398052 TTATTTATTT-TAAACTGTTTTACATATTATTTATTTTAATTTTTTTCTCATATA
1 TTATTTATTTATAAACTGTTTTATATATTATTTATTTTAA--ATTTT-T-ATATA
* * * *
11398106 TTATTTATTT-TAAACTATTATATATATGT-TATCTTTTAAATTTTTATATA
1 TTATTTATTTATAAACTGTTTTATATAT-TATTTATTTTAAATTTTTATATA
* *
11398156 TTATTT-TTCTAAAAACTGTTTTATATGTTATTT
1 TTATTTATT-TATAAACTGTTTTATATATTATTT
11398189 TTTAATTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 20
0.77 0.10 0.14
Matches are distributed among these distances:
48 10 0.09
49 18 0.16
50 13 0.12
51 30 0.27
52 5 0.04
54 36 0.32
55 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (51 bp):
TTATTTATTTATAAACTGTTTTATATATTATTTATTTTAAATTTTTATATA
Found at i:11398115 original size:28 final size:26
Alignment explanation
Indices: 11398001--11398188 Score: 140
Period size: 26 Copynumber: 7.2 Consensus size: 26
11397991 TCCATTTAAT
*
11398001 TTATTTATTTAATAAAACTCTTTTAT-TA
1 TTATTTATTT--T-AAACTGTTTTATATA
*
11398029 TTATTTATTTT-AA--GTTTTTTATA
1 TTATTTATTTTAAACTGTTTTATATA
*
11398052 TTATTTATTTTAAACTGTTTTACATA
1 TTATTTATTTTAAACTGTTTTATATA
** *
11398078 TTATTTATTTTAATTTTTTTCTCATATA
1 TTATTTATTTTAAACTGTTT-T-ATATA
* *
11398106 TTATTTATTTTAAACTATTATATATA
1 TTATTTATTTTAAACTGTTTTATATA
* *
11398132 TGT-TATCTTTTAAA-T-TTTTATATA
1 T-TATTTATTTTAAACTGTTTTATATA
* *
11398156 TTATTT-TTCTAAAAACTGTTTTATATG
1 TTATTTATT-T-TAAACTGTTTTATATA
11398183 TTATTT
1 TTATTT
11398189 TTTAATTATT
Statistics
Matches: 130, Mismatches: 18, Indels: 25
0.75 0.10 0.14
Matches are distributed among these distances:
22 5 0.04
23 16 0.12
24 16 0.12
25 4 0.03
26 42 0.32
27 17 0.13
28 30 0.23
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (26 bp):
TTATTTATTTTAAACTGTTTTATATA
Found at i:11398243 original size:26 final size:25
Alignment explanation
Indices: 11398185--11398246 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
11398175 TTTATATGTT
* *
11398185 ATTTTTTAATTATTATTTATTTTAA
1 ATTTTTTTATTATTATTTATTTGAA
* *
11398210 ATTGTTTTATTATTGTTTATTTGAA
1 ATTTTTTTATTATTATTTATTTGAA
11398235 ACTTTTTTTATT
1 A-TTTTTTTATT
11398247 TATTCTGAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
25 22 0.71
26 9 0.29
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.68
Consensus pattern (25 bp):
ATTTTTTTATTATTATTTATTTGAA
Found at i:11398246 original size:45 final size:42
Alignment explanation
Indices: 11398195--11398320 Score: 128
Period size: 45 Copynumber: 2.9 Consensus size: 42
11398185 ATTTTTTAAT
* *
11398195 TATTATTTATTTTAAATTGTTTTAT-TATTGTTTATTTGAAAC
1 TATTATTTATTTTAAATT-TTTTATAAATTATTTATTTGAAAC
* * * *
11398237 TTTTTTTATTTATTCTGAATTTTTTATAAATTATTTATTTTAAAC
1 ---TATTATTTATTTTAAATTTTTTATAAATTATTTATTTGAAAC
*
11398282 TATTATTTATTTTAAATTTTTGTATATATTATTTTATTT
1 TATTATTTATTTTAAATTTTT-TATAAATTA-TTTATTT
11398321 CATTTTCTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
42 18 0.26
43 8 0.12
44 13 0.19
45 29 0.43
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (42 bp):
TATTATTTATTTTAAATTTTTTATAAATTATTTATTTGAAAC
Found at i:11399343 original size:6 final size:6
Alignment explanation
Indices: 11399332--11399374 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
11399322 TAAGTTTCCA
* * * *
11399332 AAAATG AAAATG AAAATG GAAATG GAAATG GAAATG GAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A
11399375 TCCATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:11399360 original size:18 final size:18
Alignment explanation
Indices: 11399333--11399374 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
11399323 AAGTTTCCAA
11399333 AAATGAAAATGAAAATGG
1 AAATGAAAATGAAAATGG
* *
11399351 AAATGGAAATGGAAATGG
1 AAATGAAAATGAAAATGG
11399369 AAATGA
1 AAATGA
11399375 TCCATTTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (18 bp):
AAATGAAAATGAAAATGG
Found at i:11399559 original size:26 final size:27
Alignment explanation
Indices: 11399510--11399572 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
11399500 TATATAAATT
*
11399510 TTAAAATTTTACCAAGGGAAAAAATCA
1 TTAAAATTTTACCAACGGAAAAAATCA
* *
11399537 TTAAAATTTTACCAACGG-TAAAATCG
1 TTAAAATTTTACCAACGGAAAAAATCA
*
11399563 TCAAAATTTT
1 TTAAAATTTT
11399573 GTTTGGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 15 0.47
27 17 0.53
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.32
Consensus pattern (27 bp):
TTAAAATTTTACCAACGGAAAAAATCA
Found at i:11400956 original size:7 final size:7
Alignment explanation
Indices: 11400944--11400968 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11400934 ATCTGAAACG
11400944 AAAACAT
1 AAAACAT
11400951 AAAACAT
1 AAAACAT
11400958 AAAACAT
1 AAAACAT
11400965 AAAA
1 AAAA
11400969 TTAAACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAACAT
Found at i:11403861 original size:20 final size:20
Alignment explanation
Indices: 11403793--11403862 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
11403783 ACTCTACTTC
*
11403793 AAGCTCACTCAGCTCAATTTT
1 AAGCTCATTCAGCTC-ATTTT
* *
11403814 TAGCTCA-ACGAGCTCATTCTT
1 AAGCTCATTC-AGCTCATT-TT
*
11403835 -AGTTCATTCAGCTCATTTT
1 AAGCTCATTCAGCTCATTTT
11403854 AAGCTCATT
1 AAGCTCATT
11403863 TTAGTTTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
19 2 0.05
20 24 0.60
21 14 0.35
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (20 bp):
AAGCTCATTCAGCTCATTTT
Found at i:11404011 original size:28 final size:28
Alignment explanation
Indices: 11403954--11404011 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
11403944 CTGGTCAAAT
* * **
11403954 AATTATTAAGTGTTTTAATTATGTTTTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
*
11403982 AATTATTTAGTGTCTTAAATATGTCCTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
11404010 AA
1 AA
11404012 CTCATACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.50
Consensus pattern (28 bp):
AATTATTAAGTGTCTTAAATATGTCCTA
Found at i:11405277 original size:13 final size:12
Alignment explanation
Indices: 11405243--11405273 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
11405233 GGTTTATTGT
11405243 AAAAAAATTTGA
1 AAAAAAATTTGA
11405255 AAAAAAATTTGA
1 AAAAAAATTTGA
11405267 AAAAAAA
1 AAAAAAA
11405274 ATTTCGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (12 bp):
AAAAAAATTTGA
Found at i:11410549 original size:11 final size:10
Alignment explanation
Indices: 11410533--11410575 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
11410523 TAGCTCAACG
11410533 AGCTCATTCTT
1 AGCTCATT-TT
*
11410544 AGCTCA-TTC
1 AGCTCATTTT
11410553 AGCTCATTTT
1 AGCTCATTTT
11410563 AAGCTCATTTT
1 -AGCTCATTTT
11410574 AG
1 AG
11410576 TTTGCATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 7 0.25
10 5 0.18
11 16 0.57
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (10 bp):
AGCTCATTTT
Found at i:11410556 original size:20 final size:19
Alignment explanation
Indices: 11410503--11410571 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 19
11410493 CTCTACTTCA
*
11410503 AGCTCACTCAGCTCAATTTTT
1 AGCTCATTCAGCTC-A-TTTT
*
11410524 AGCTCA-ACGAGCTCATTCTT
1 AGCTCATTC-AGCTCATT-TT
11410544 AGCTCATTCAGCTCATTTT
1 AGCTCATTCAGCTCATTTT
11410563 AAGCTCATT
1 -AGCTCATT
11410572 TTAGTTTGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
19 4 0.10
20 26 0.62
21 12 0.29
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.36
Consensus pattern (19 bp):
AGCTCATTCAGCTCATTTT
Found at i:11410720 original size:28 final size:28
Alignment explanation
Indices: 11410663--11410720 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
11410653 CTGGTCAAAT
* * **
11410663 AATTATTAAGTGTTTTAATTATGTTTTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
*
11410691 AATTATTTAGTGTCTTAAATATGTCCTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
11410719 AA
1 AA
11410721 CTCATACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.50
Consensus pattern (28 bp):
AATTATTAAGTGTCTTAAATATGTCCTA
Found at i:11412997 original size:13 final size:15
Alignment explanation
Indices: 11412974--11413005 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
11412964 TAAATATATT
11412974 CTTTAGAGTT-AAAA
1 CTTTAGAGTTAAAAA
11412988 CTTT-GAGTTAAAAA
1 CTTTAGAGTTAAAAA
11413002 CTTT
1 CTTT
11413006 CATTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (15 bp):
CTTTAGAGTTAAAAA
Found at i:11416417 original size:22 final size:21
Alignment explanation
Indices: 11416387--11416431 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
11416377 AAAAGTATAA
*
11416387 TTTTTAATATTTTTACA-AAAT
1 TTTTTAATAATTTTA-ATAAAT
11416408 TTTTTGAATAATTTTAATAAAT
1 TTTTT-AATAATTTTAATAAAT
11416430 TT
1 TT
11416432 CTATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTTAATAATTTTAATAAAT
Found at i:11417693 original size:3 final size:3
Alignment explanation
Indices: 11417687--11417745 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
11417677 TTTCCATTAG
11417687 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
11417734 TTC TTC TTC TTC
1 TTC TTC TTC TTC
11417746 ATGTAAAGAT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 53 0.96
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:11418152 original size:30 final size:30
Alignment explanation
Indices: 11418116--11418176 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
11418106 CAATGCCATG
11418116 ATAAACAATTGGAGTGTATTCAATATTCTT
1 ATAAACAATTGGAGTGTATTCAATATTCTT
11418146 ATAAACAATTGGAGTGTATTCAATATTCTT
1 ATAAACAATTGGAGTGTATTCAATATTCTT
11418176 A
1 A
11418177 ATATGATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (30 bp):
ATAAACAATTGGAGTGTATTCAATATTCTT
Found at i:11422136 original size:235 final size:235
Alignment explanation
Indices: 11421725--11422194 Score: 922
Period size: 235 Copynumber: 2.0 Consensus size: 235
11421715 ATCAAGGTGC
11421725 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
1 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
11421790 TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
66 TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
*
11421855 AGACATACTCCGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
131 AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
11421920 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
196 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
11421960 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
1 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
*
11422025 TAAAGTCGATGTAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
66 TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
11422090 AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
131 AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
11422155 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
196 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
11422195 GACATCACTA
Statistics
Matches: 233, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
235 233 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (235 bp):
AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
Found at i:11424096 original size:18 final size:17
Alignment explanation
Indices: 11424069--11424102 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
11424059 ATGAAGGTGC
11424069 AGATGAGGAAAAAAATA
1 AGATGAGGAAAAAAATA
*
11424086 AGATCGAGGAAGAAAAT
1 AGAT-GAGGAAAAAAAT
11424103 GCGGTCAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.03, G:0.26, T:0.12
Consensus pattern (17 bp):
AGATGAGGAAAAAAATA
Found at i:11428731 original size:17 final size:17
Alignment explanation
Indices: 11428709--11428751 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
11428699 CTTGCCTGAG
11428709 AAAATGTTGAGTTGTGT
1 AAAATGTTGAGTTGTGT
**
11428726 AAAATGTTTGTTTTGTGT
1 AAAATG-TTGAGTTGTGT
11428744 AAAATGTT
1 AAAATGTT
11428752 TGTTAGCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (17 bp):
AAAATGTTGAGTTGTGT
Found at i:11428743 original size:18 final size:18
Alignment explanation
Indices: 11428720--11428755 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
11428710 AAATGTTGAG
11428720 TTGTGTAAAATGTTTGTT
1 TTGTGTAAAATGTTTGTT
11428738 TTGTGTAAAATGTTTGTT
1 TTGTGTAAAATGTTTGTT
11428756 AGCCATCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (18 bp):
TTGTGTAAAATGTTTGTT
Found at i:11436715 original size:75 final size:75
Alignment explanation
Indices: 11436573--11436734 Score: 177
Period size: 75 Copynumber: 2.2 Consensus size: 75
11436563 TCAATTTTTA
* * * * *
11436573 ATTATGTGTTTTGTTTGTTAAATGCATCTTTATTTAATGTTTTGCATTAATACATCTACATCTTT
1 ATTATGTGTTTTGTTTATTAAATGCATCTTTAGTTAATGCTTTACATTAATACATCTACATCCTT
**
11436638 TAAAATGTGC
66 TAAAACCTGC
* * *
11436648 ATTATGT-TTCTTGTTTATTGAATGCGTCTTTAGTTAACT-CTTTACATTAATACAT-TAGGATC
1 ATTATGTGTT-TTGTTTATTAAATGCATCTTTAGTTAA-TGCTTTACATTAATACATCTA-CATC
*
11436710 CTTTAAGACCTGC
63 CTTTAAAACCTGC
11436723 ATTATGTGTTTT
1 ATTATGTGTTTT
11436735 CATAAGTCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
74 4 0.06
75 65 0.90
76 3 0.04
ACGTcount: A:0.25, C:0.12, G:0.13, T:0.49
Consensus pattern (75 bp):
ATTATGTGTTTTGTTTATTAAATGCATCTTTAGTTAATGCTTTACATTAATACATCTACATCCTT
TAAAACCTGC
Found at i:11436983 original size:75 final size:75
Alignment explanation
Indices: 11436852--11436997 Score: 177
Period size: 75 Copynumber: 1.9 Consensus size: 75
11436842 AATTTATGAG
* * * * * **
11436852 TGTTTGTTAAATGCATCTTTATTTAATGTTTTGCATTAATACATCTACATCTTTTAAAATGTGCA
1 TGTTTATTAAATGCATCTTTAGTTAACGCTTTGCATTAATACATCTACATCCTTTAAAACCTGCA
11436917 TTATGTTTCT
66 TTATGTTTCT
* * * *
11436927 TGTTTATTGAATGCGTCTTTAGTTAACGCTTTGCATTAATACAT-TAGGATCCTTTAAGACCTGC
1 TGTTTATTAAATGCATCTTTAGTTAACGCTTTGCATTAATACATCTA-CATCCTTTAAAACCTGC
11436991 ATTATGT
65 ATTATGT
11436998 GTTTTCATAA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 2 0.03
75 57 0.97
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.47
Consensus pattern (75 bp):
TGTTTATTAAATGCATCTTTAGTTAACGCTTTGCATTAATACATCTACATCCTTTAAAACCTGCA
TTATGTTTCT
Found at i:11437061 original size:268 final size:268
Alignment explanation
Indices: 11436584--11437104 Score: 1024
Period size: 268 Copynumber: 1.9 Consensus size: 268
11436574 TTATGTGTTT
11436584 TGTTTGTTAAATGCATCTTTATTTAATGTTTTGCATTAATACATCTACATCTTTTAAAATGTGCA
1 TGTTTGTTAAATGCATCTTTATTTAATGTTTTGCATTAATACATCTACATCTTTTAAAATGTGCA
*
11436649 TTATGTTTCTTGTTTATTGAATGCGTCTTTAGTTAACTCTTTACATTAATACATTAGGATCCTTT
66 TTATGTTTCTTGTTTATTGAATGCGTCTTTAGTTAACGCTTTACATTAATACATTAGGATCCTTT
11436714 AAGACCTGCATTATGTGTTTTCATAAGTCATGCATTAAATCATCTCATTTGTTAATTTACTTCAA
131 AAGACCTGCATTATGTGTTTTCATAAGTCATGCATTAAATCATCTCATTTGTTAATTTACTTCAA
11436779 GTATGGTTTAAGTTGCATGTTCATTTAATTTATGTGCATGAGTGTTATTAAATATGTTCATTTAA
196 GTATGGTTTAAGTTGCATGTTCATTTAATTTATGTGCATGAGTGTTATTAAATATGTTCATTTAA
11436844 TTTATGAG
261 TTTATGAG
11436852 TGTTTGTTAAATGCATCTTTATTTAATGTTTTGCATTAATACATCTACATCTTTTAAAATGTGCA
1 TGTTTGTTAAATGCATCTTTATTTAATGTTTTGCATTAATACATCTACATCTTTTAAAATGTGCA
*
11436917 TTATGTTTCTTGTTTATTGAATGCGTCTTTAGTTAACGCTTTGCATTAATACATTAGGATCCTTT
66 TTATGTTTCTTGTTTATTGAATGCGTCTTTAGTTAACGCTTTACATTAATACATTAGGATCCTTT
11436982 AAGACCTGCATTATGTGTTTTCATAAGTCATGCATTAAATCATCTCATTTGTTAATTTACTTCAA
131 AAGACCTGCATTATGTGTTTTCATAAGTCATGCATTAAATCATCTCATTTGTTAATTTACTTCAA
11437047 GTATGGTTTAAGTTGCATGTTCATTTAATTTATGTGCATGAGTGTTATTAAATATGTT
196 GTATGGTTTAAGTTGCATGTTCATTTAATTTATGTGCATGAGTGTTATTAAATATGTT
11437105 GTTTTTATGA
Statistics
Matches: 251, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
268 251 1.00
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (268 bp):
TGTTTGTTAAATGCATCTTTATTTAATGTTTTGCATTAATACATCTACATCTTTTAAAATGTGCA
TTATGTTTCTTGTTTATTGAATGCGTCTTTAGTTAACGCTTTACATTAATACATTAGGATCCTTT
AAGACCTGCATTATGTGTTTTCATAAGTCATGCATTAAATCATCTCATTTGTTAATTTACTTCAA
GTATGGTTTAAGTTGCATGTTCATTTAATTTATGTGCATGAGTGTTATTAAATATGTTCATTTAA
TTTATGAG
Found at i:11437623 original size:19 final size:19
Alignment explanation
Indices: 11437599--11437637 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
11437589 AATATTTCTG
11437599 AGTTTTGTGTGAGAAATTT
1 AGTTTTGTGTGAGAAATTT
*
11437618 AGTTTTGTGTGAGAATTTT
1 AGTTTTGTGTGAGAAATTT
11437637 A
1 A
11437638 TACTTTGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (19 bp):
AGTTTTGTGTGAGAAATTT
Found at i:11438697 original size:25 final size:25
Alignment explanation
Indices: 11438669--11438737 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 25
11438659 CCTGATATAT
11438669 GGCTCTTCGGAGCTTCCTAATTAAA
1 GGCTCTTCGGAGCTTCCTAATTAAA
* *
11438694 GGCTCTTTCAAGAGCTTCCTAATTAAT
1 GGCTC-TTC-GGAGCTTCCTAATTAAA
* *
11438721 GGCTCTCCGGACCTTCC
1 GGCTCTTCGGAGCTTCC
11438738 CAATAATTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 12 0.32
26 5 0.14
27 20 0.54
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32
Consensus pattern (25 bp):
GGCTCTTCGGAGCTTCCTAATTAAA
Found at i:11440379 original size:736 final size:734
Alignment explanation
Indices: 11438951--11440682 Score: 2736
Period size: 736 Copynumber: 2.4 Consensus size: 734
11438941 ATCAACTTTT
*
11438951 ATAGTAGTGGGTCTTACTTCACCTATTCCCAACAGTTTGAAAATAGATTTGGGCATCAACTTGAT
1 ATAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTTTGAAAATAGATTTGGGCATCAACTTGAT
*
11439016 GCTTGCTCCAATGTCGTACAAAGCTTCACCGCAGTAAGATTCTCTGATGTTACATGGTATCGTAA
66 GCTTGCTCCAATGTCATACAAAGCTTCACCGCAGTAAGATTCTCTGATGTTACATGGTATCGTAA
* ** *
11439081 AGC-TTCTAGGGTCCTTTAGTTTTAGAGGTAGCTTGTTCTGTAAGAACGGACAGCTCTCTTTTGT
131 AGCTTTC-AGGGTCCTTTAGTTTTAAAGGTAGCTTGTTCTGTAAGAACACACAGCACTCTTTTGT
*
11439145 CAAAGCAATAGTCTCATAGTCACTAAAGCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCA
195 CAAAGCAATAGTCTCATACTCACT-AAGCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCA
* * *
11439210 AGTAGTTGGGCATCTATTCTAAAGCATCCACCAATGAGATGTTGATGTGAAGTTACTTTAGAACA
259 TGTAGTTGGGCATCTATTCTAAAGCATCCACCAAAGAGATGTTGATCTGAAGTTACTTTAGAACA
* * * *
11439275 TCCAAGAACTTCTTAAATTGTACCAGTTGTTTCTGCTTATTCTGTTGAGGATTTTGAGGATATGG
324 TCCAAGAACTTCTTAAATTGTACCACTTGTTTCTACTTATTCTGTTCAAGATTTTGAGGATATGG
* *
11439340 AACTCCAGGTTGATATGGACAACTTTTTTAAAGAAGTAAATCTGAAAAAAGAGTTAGCTTCTTAG
389 AACTCCAGATTGATATGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAAGAGTTAGCTTCTTAG
* *
11439405 AATTTACTAGTTTAAGGTTTACCTCATCATATTTTTTAGCATATTATTTTTTCAGTATAAAAACT
454 AATTTACTAGTTTAAGGTGTACCTCATCATATTTTTCAGCATATTATTTTTTCAGTATAAAAACT
*
11439470 TCAAATTTTGGTTGACTTTCCTCCTTCTCAGTACGCTCATCTTCAATCACAACCTCCTTGGGTTT
519 TCAAATTTTGGTTGACTTTCCTCCTTCTAAGTACGCTCATCTTCAATCACAACCTCCTTGGGTTT
* * *
11439535 TAAAATCTTACCACTTCGTAATGCAACCAATTCACAATGCTTCTTACCCAAACTCCTTGGATTTT
584 CAAAATCTTACCACATCGTAATGCAACCAAGTCACAATGCTTCTTACCCAAACTCCTTGGATTTT
* * * *
11439600 TTGTATCGCTTATCGAAGCTCTTTATGGTCTAATACGAAGCTTTTCCCTCAGGATATGCTAACGA
649 CTGTATCGCTCATCGAAGCTCTTTACGGTCTAATACAAAGCTTTTCCCTC-GGATATGCTAACGA
*
11439665 AAGATCCGGAAGTTGAAGTGTC
713 AAGATCCGCAAGTTGAAGTGTC
11439687 ATAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTTTGAAAATAGATTTGGGCATCAACTTGAT
1 ATAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTTTGAAAATAGATTTGGGCATCAACTTGAT
* *
11439752 GCCTGCTCCAATGTCATACAAAGCTTCACCGCAGTAATATTCTCTGATGTTACATGGTATCGTAA
66 GCTTGCTCCAATGTCATACAAAGCTTCACCGCAGTAAGATTCTCTGATGTTACATGGTATCGTAA
* * *
11439817 AGCTTTCAGGGTCCTTTAGTTTTGAAACGTAGCTTGTTCTGTAAGAAAACACTGCACTCTTTTGT
131 AGCTTTCAGGGTCCTTTAGTTTT-AAAGGTAGCTTGTTCTGTAAGAACACACAGCACTCTTTTGT
11439882 CAAAGCAATAGTCTCATACTCACTAAGTCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCA
195 CAAAGCAATAGTCTCATACTCACTAAG-CATTTCTTCTTGGACAAAATATCCTTCATAAACTTCA
* *
11439947 TGTAGTTGGGCATTTATTCTAAAGCCTCCACCAAA-AGGATGTTGATCTG-AGTTACTTTAGAAC
259 TGTAGTTGGGCATCTATTCTAAAGCATCCACCAAAGA-GATGTTGATCTGAAGTTACTTTAGAAC
* *
11440010 TTCCAAGAACTTCTTAAATTGTACCTCTTGTTTCTACTTATTCTGTTCAAGATTTTGAGGATATG
323 ATCCAAGAACTTCTTAAATTGTACCACTTGTTTCTACTTATTCTGTTCAAGATTTTGAGGATATG
* * * * *
11440075 GAGCTCTAGATTGATATGGACTACTTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTA
388 GAACTCCAGATTGATATGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAAGAGTTAGCTTCTTA
* * *
11440140 GAATTTACTAGTTTAGGGTGTACCTCATCATATTTTTCAGCATCTTATTTTTTCAGTATAAGAAC
453 GAATTTACTAGTTTAAGGTGTACCTCATCATATTTTTCAGCATATTATTTTTTCAGTATAAAAAC
* * *
11440205 TTCAACTTTTGTTTGACTTTCCTCCTTCTAAGTAGGCTCATCTTCAATCACAACCTCCTTGGGTT
518 TTCAAATTTTGGTTGACTTTCCTCCTTCTAAGTACGCTCATCTTCAATCACAACCTCCTTGGGTT
11440270 TCAAAATCTTACCACATCGTAATGCAACCAAGT-ATCAATGCTTCTTACCCAAACTCCTTGGATT
583 TCAAAATCTTACCACATCGTAATGCAACCAAGTCA-CAATGCTTCTTACCCAAACTCCTTGGATT
* * *
11440334 TTCTGTATCGCTCAT-GAAAGCTCTTTGCGGTCTACTACAAAGCTTTTCCTTCGGATATGCTAAC
647 TTCTGTATCGCTCATCG-AAGCTCTTTACGGTCTAATACAAAGCTTTTCCCTCGGATATGCTAAC
*
11440398 GAAAGATCCGCAAGTTGAAGTTTC
711 GAAAGATCCGCAAGTTGAAGTGTC
* * * *
11440422 ATAGTAGTTGTTCTTACTTCACCTATTCCCAATAGTTTGAAAATATATTTGGGCATCAAGTTGAT
1 ATAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTTTGAAAATAGATTTGGGCATCAACTTGAT
* * * * *
11440487 GTTTGCTCAAATGTCATACAAAGCTTCACCGAAATAAGATTCTCAGATGTTACATGGTATCGTAA
66 GCTTGCTCCAATGTCATACAAAGCTTCACCGCAGTAAGATTCTCTGATGTTACATGGTATCGTAA
* * ** * *
11440552 AGCTTCCAAGGTCCTTTAGTTTCCAAGGTAGTTTGTTCTGTAAGAACACACAACACTCTTTTGTC
131 AGCTTTCAGGGTCCTTTAGTTTTAAAGGTAGCTTGTTCTGTAAGAACACACAGCACTCTTTTGTC
* *
11440617 AAAGCAATAGTCTCATACTCATTAAGCCATTTCTTCTTGGAAAAAATATCCTTCATAAACTTCAT
196 AAAGCAATAGTCTCATACTCACTAAG-CATTTCTTCTTGGACAAAATATCCTTCATAAACTTCAT
11440682 G
260 G
11440683 GAAATATTGA
Statistics
Matches: 916, Mismatches: 74, Indels: 14
0.91 0.07 0.01
Matches are distributed among these distances:
734 99 0.11
735 175 0.19
736 503 0.55
737 139 0.15
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (734 bp):
ATAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTTTGAAAATAGATTTGGGCATCAACTTGAT
GCTTGCTCCAATGTCATACAAAGCTTCACCGCAGTAAGATTCTCTGATGTTACATGGTATCGTAA
AGCTTTCAGGGTCCTTTAGTTTTAAAGGTAGCTTGTTCTGTAAGAACACACAGCACTCTTTTGTC
AAAGCAATAGTCTCATACTCACTAAGCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCATG
TAGTTGGGCATCTATTCTAAAGCATCCACCAAAGAGATGTTGATCTGAAGTTACTTTAGAACATC
CAAGAACTTCTTAAATTGTACCACTTGTTTCTACTTATTCTGTTCAAGATTTTGAGGATATGGAA
CTCCAGATTGATATGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAAGAGTTAGCTTCTTAGAA
TTTACTAGTTTAAGGTGTACCTCATCATATTTTTCAGCATATTATTTTTTCAGTATAAAAACTTC
AAATTTTGGTTGACTTTCCTCCTTCTAAGTACGCTCATCTTCAATCACAACCTCCTTGGGTTTCA
AAATCTTACCACATCGTAATGCAACCAAGTCACAATGCTTCTTACCCAAACTCCTTGGATTTTCT
GTATCGCTCATCGAAGCTCTTTACGGTCTAATACAAAGCTTTTCCCTCGGATATGCTAACGAAAG
ATCCGCAAGTTGAAGTGTC
Found at i:11448004 original size:43 final size:43
Alignment explanation
Indices: 11447900--11448139 Score: 230
Period size: 42 Copynumber: 5.7 Consensus size: 43
11447890 ATCCGTTACT
* * **
11447900 CGGTGGATTCAACACTTAGCAACCACC-TTAAATTCAGTGATA
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAAGTCAAAGATA
* * *
11447942 CGG-GGAATCAGCACATAGCAACC-CCTTTCACAGTCAAAGATA
1 CGGTGGAATCAACACTTAGCAACCACCTTT-AAAGTCAAAGATA
* * *
11447984 CGGTGGAATCAACACTTAGCAACCACCTTTATATTCAGTA-ATA
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAAGTCA-AAGATA
*
11448027 CGG-GGAATCAACACATAGCAACC-CCTTTCACAA-TCAAAGATA
1 CGGTGGAATCAACACTTAGCAACCACCTTT-A-AAGTCAAAGATA
* *
11448069 CGGTGGAATCAGCACTTAGCAACCACCTTTAAAGTCAATA-ATT
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAAGTCAA-AGATA
* *
11448112 C-GAGGAATCAGCACTTAGCAACC-CCTTT
1 CGGTGGAATCAACACTTAGCAACCACCTTT
11448140 TTATTCAATG
Statistics
Matches: 167, Mismatches: 19, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
40 2 0.01
41 30 0.18
42 67 0.40
43 56 0.34
44 12 0.07
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
CGGTGGAATCAACACTTAGCAACCACCTTTAAAGTCAAAGATA
Found at i:11448045 original size:85 final size:85
Alignment explanation
Indices: 11447900--11448139 Score: 374
Period size: 85 Copynumber: 2.8 Consensus size: 85
11447890 ATCCGTTACT
* *
11447900 CGGTGGATTCAACACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
*
11447964 CCCTTTCACAGTCAAAGATA
66 CCCTTTCACAATCAAAGATA
* *
11447984 CGGTGGAATCAACACTTAGCAACCACCTTTATATTCAGTAATACGGGGAATCAACACATAGCAAC
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
11448049 CCCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* * * * * *
11448069 CGGTGGAATCAGCACTTAGCAACCACCTTTAAAGTCAATAATTCGAGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
11448134 CCCTTT
66 CCCTTT
11448140 TTATTCAATG
Statistics
Matches: 142, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
84 26 0.18
85 116 0.82
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (85 bp):
CGGTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:11450765 original size:736 final size:736
Alignment explanation
Indices: 11449329--11451144 Score: 2854
Period size: 736 Copynumber: 2.5 Consensus size: 736
11449319 CTATTATAGG
* * *
11449329 AACTCTAGGTTGATGTGGACAACTTTTTTTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTA
1 AACTCTAGGTTGATATGGACAA-ATTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTA
*
11449394 GAATTTACTAGTTTAGGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTCAATATAAGAAC
65 GAATTTACTAGTTTAGGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTCAGTATAAGAAC
*
11449459 TTCAACTTTTGGTTGACTTTCCTCCTTCTCAGTAGGCTCATCTTCAATCACAACCTCCTTCGGTT
130 TTCAACTTTTGGTTGACTTTCCTCCTTCTCAGTAGGCTCATCTTCAATCACAACCTCCTTGGGTT
*
11449524 TCAAAATCTTACCACTTCGTAATGCAACCAATT-TGCAATGCTTCTTACCCAAACT-C--AGATT
195 TCAAAATCTTACCACTTCGTAATGCAACCAATTCT-CAATGCTTCTTACCCAAACTCCTTGGATT
* * * ** * * *
11449585 TTTTGTATCACGCATCAAAGCTCTTTGTTTTTTACTACAAAGCTTTTCCCTTAGGATATGCTAAC
259 TTCTGTATCGCTCATCAAAGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAAC
* * *
11449650 GAATGATCTGCAAGTTGAAGTGTCACAGTAGTGGGTCTTACTTCACCTATTTCCAATAGTTTGAA
324 GAATGATCTGCAAGTTGAAGTGTCACAGTAGTGAGTCTTACTTCACCGATTCCCAATAGTTTGAA
* *
11449715 AATAGATTTGGGCATCAAGTTGATGCTTGCTCAAATGTCGTACAAAGCTTCACCGCAGTAATATT
389 AATAGATTTGGGCATCAAGTTGATGCTTGCTCAAAAGTCGTACAAAGCTTCACCGCAGTAAGATT
* * *
11449780 CTTTGATGTTACATGGTATAATAAAGCTTCCAGGGTCCTTTAGTTTCCAAGGTAGCTTGTTCTGT
454 CTCTGATGTTACATGGTATAATAAAGCTTCCAAGGTCCTTTAGTTTCCAAGGTAGCCTGTTCTGT
* *
11449845 AAGAACACACAACACTCTTTTGTGAAAGCAATAGTCTCATACTCACTAAGCCATTTCTTCTTGGA
519 AAGAACACACAACACTCTTTTGTCAAAGCAATAGTCTCATACTCACTAAGCCATTTCTTCTTAGA
* * *
11449910 CAAAATATCCTTCATAAACTTCATGTAGTTGGGCATTTATTCTAAAGCCTCCACCAATGGGATGT
584 AAAAATATCCTTCATAAACTTCATGTAGTTGGGCATCTATTCTAAAGCCTCCACCAACGGGATGT
**
11449975 TGATATGAAGTTACTTTAGAACAGCCAAGAACTTCTTAAATTGTACCTCTTATTTCTTCTTATTC
649 TGATATGAAGTTACTTTAGAACAGCCAAGAACTTCTTAAATTGTACCTCTTATTTCAGCTTATTC
* * *
11450040 TGTTAAATATTTTGAGGATATGT
714 TATTAAAGATTTTGAGGATATGA
* *
11450063 AACTCTAGGTTGATATGGACAAATTTTCTAAAGAAATAAATTTGAAAAAGGTGTTAGCTTCTTAG
1 AACTCTAGGTTGATATGGACAAATTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAG
* *
11450128 AATTTACTAGTTTAGGGTGTACCTCATCATATATTTCAGCATCTTATTTTTTCAGTATAAGAACT
66 AATTTACTAGTTTAGGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTCAGTATAAGAACT
*
11450193 TCAACTATTGGTTGACTTTCCTCCTTCTCAGTAGGCTCATCTTCAATCACAACCTCCTTGGGTTT
131 TCAACTTTTGGTTGACTTTCCTCCTTCTCAGTAGGCTCATCTTCAATCACAACCTCCTTGGGTTT
*
11450258 CAAAATCTTACCACTTTGTAATGCAACCAATTCTCAATGCTTCTTACCCAAACTCCTTGGATTTT
196 CAAAATCTTACCACTTCGTAATGCAACCAATTCTCAATGCTTCTTACCCAAACTCCTTGGATTTT
** * *
11450323 CTGTATCGCTCATCAAAGCTCTTCATGGTCTACTACGAAGCTTTTCCCTCAGGATATGTTAACAA
261 CTGTATCGCTCATCAAAGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGA
* *
11450388 ATGATCCGCATA-TTGAAGTGTCACAATAGTGAGTCTTACTTCACCGATTCCCAATAGTTTGAAA
326 ATGATCTGCA-AGTTGAAGTGTCACAGTAGTGAGTCTTACTTCACCGATTCCCAATAGTTTGAAA
** *
11450452 ATAGATTTGGGCATCAAGTTGATTTTTGCTCAAAAGTCGTACAAAGCTTCACCGCATTAAGATTC
390 ATAGATTTGGGCATCAAGTTGATGCTTGCTCAAAAGTCGTACAAAGCTTCACCGCAGTAAGATTC
** *
11450517 TCTGATGTTACATGGTATCGTAAAGCTTCCAAGGTCTTTTAGTTTCCAAGGTAGCCTGTTCTGTA
455 TCTGATGTTACATGGTATAATAAAGCTTCCAAGGTCCTTTAGTTTCCAAGGTAGCCTGTTCTGTA
*
11450582 AGAACACACAACACTCTTTTGTCAAAGCAATAGTCTCATACTCATTAAGCCATTTCTTCTTAGAA
520 AGAACACACAACACTCTTTTGTCAAAGCAATAGTCTCATACTCACTAAGCCATTTCTTCTTAGAA
* *
11450647 AAAATATCCTTCATAAACTTCATGTAGTTGGTCATCTATTCTAAAGCCTTCACCAACGGGATGTT
585 AAAATATCCTTCATAAACTTCATGTAGTTGGGCATCTATTCTAAAGCCTCCACCAACGGGATGTT
* *
11450712 GATGTGAATTTACTTTAGAACATG-CAAGAACTTCTTAAATTGTACCTCTTATTTCAGCTTATTC
650 GATATGAAGTTACTTTAGAACA-GCCAAGAACTTCTTAAATTGTACCTCTTATTTCAGCTTATTC
* *
11450776 TATTGAGGATTTTGAGGATATGA
714 TATTAAAGATTTTGAGGATATGA
*
11450799 AACTCTAGGTTGATATGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAG
1 AACTCTAGGTTGATATGGACAAATTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAG
* *
11450864 AATTTACTAGTTTAGGGTTTACCTCATCATATTTTTCAGGATCTTATTTTTTCAGTTTAAGAACT
66 AATTTACTAGTTTAGGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTCAGTATAAGAACT
* * * *
11450929 TC-AGTTTTGGTTGACTTTCCTCCATCTCAGTAGGCTCATCTTCAATCACATCGTCCTTGGG---
131 TCAACTTTTGGTTGACTTTCCTCCTTCTCAGTAGGCTCATCTTCAATCACAACCTCCTTGGGTTT
* * * *
11450990 -----T-TTACCACTTCATAATGCAACCAATTCTCAATGCTTCTTACCCTAACTCTTTGGGTTTT
196 CAAAATCTTACCACTTCGTAATGCAACCAATTCTCAATGCTTCTTACCCAAACTCCTTGGATTTT
* *
11451049 CTGTATCGCTCATCAAAGCTCTTTGTGGTCTATTACGAAGCTGTTCCCTCAGGATATGCTAACGA
261 CTGTATCGCTCATCAAAGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGA
11451114 ATGATCTGCAAGTTGAAGTGTCACAGTAGTG
326 ATGATCTGCAAGTTGAAGTGTCACAGTAGTG
11451145 GGTTGAACAC
Statistics
Matches: 993, Mismatches: 82, Indels: 22
0.91 0.07 0.02
Matches are distributed among these distances:
725 1 0.00
726 139 0.14
727 1 0.00
733 215 0.22
734 23 0.02
735 54 0.05
736 558 0.56
737 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (736 bp):
AACTCTAGGTTGATATGGACAAATTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAG
AATTTACTAGTTTAGGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTCAGTATAAGAACT
TCAACTTTTGGTTGACTTTCCTCCTTCTCAGTAGGCTCATCTTCAATCACAACCTCCTTGGGTTT
CAAAATCTTACCACTTCGTAATGCAACCAATTCTCAATGCTTCTTACCCAAACTCCTTGGATTTT
CTGTATCGCTCATCAAAGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGA
ATGATCTGCAAGTTGAAGTGTCACAGTAGTGAGTCTTACTTCACCGATTCCCAATAGTTTGAAAA
TAGATTTGGGCATCAAGTTGATGCTTGCTCAAAAGTCGTACAAAGCTTCACCGCAGTAAGATTCT
CTGATGTTACATGGTATAATAAAGCTTCCAAGGTCCTTTAGTTTCCAAGGTAGCCTGTTCTGTAA
GAACACACAACACTCTTTTGTCAAAGCAATAGTCTCATACTCACTAAGCCATTTCTTCTTAGAAA
AAATATCCTTCATAAACTTCATGTAGTTGGGCATCTATTCTAAAGCCTCCACCAACGGGATGTTG
ATATGAAGTTACTTTAGAACAGCCAAGAACTTCTTAAATTGTACCTCTTATTTCAGCTTATTCTA
TTAAAGATTTTGAGGATATGA
Found at i:11452300 original size:27 final size:27
Alignment explanation
Indices: 11452270--11452449 Score: 111
Period size: 27 Copynumber: 6.7 Consensus size: 27
11452260 TATAGCGGTC
*
11452270 ATTTTACCTTATAGGGGTATTTCGATA
1 ATTTTACCTTATAGGGGTATTTCAATA
*
11452297 ATTTTAGCCATTA-A-GGGTATTTCAATC
1 ATTTTA-CC-TTATAGGGGTATTTCAATA
* *
11452324 ATTTTACCCT-TCGGGAGTATTTCAATA
1 ATTTTACCTTATAGGG-GTATTTCAATA
* * *
11452351 ATTTTACC-CATTGAGGGTATTTCGATA
1 ATTTTACCTTATAG-GGGTATTTCAATA
* * * *
11452378 ATTTTACC-CATCGAGGGTATTTTAGTA
1 ATTTTACCTTATAG-GGGTATTTCAATA
* * * *
11452405 ATTTTACC-CATCAAGGGTATTTCAGTC
1 ATTTTACCTTAT-AGGGGTATTTCAATA
* *
11452432 ATTTTACCCTACAGGGGT
1 ATTTTACCTTATAGGGGT
11452450 CTCGGTGTAG
Statistics
Matches: 125, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.01
26 4 0.03
27 111 0.89
28 6 0.05
29 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACCTTATAGGGGTATTTCAATA
Found at i:11452344 original size:54 final size:53
Alignment explanation
Indices: 11452268--11452441 Score: 213
Period size: 54 Copynumber: 3.2 Consensus size: 53
11452258 GGTATAGCGG
* * * *
11452268 TCATTTTACCTTATAGGGGTATTTCGATAATTTTAGCCATTAAGGGTATTTCAA
1 TCATTTTACCCT-TCGGGGTATTTCAATAATTTTACCCATTAAGGGTATTTCAA
* *
11452322 TCATTTTACCCTTCGGGAGTATTTCAATAATTTTACCCATTGAGGGTATTTCGA
1 TCATTTTACCCTTCGGG-GTATTTCAATAATTTTACCCATTAAGGGTATTTCAA
* * * * * *
11452376 TAATTTTACCCATCGAGGGTATTTTAGTAATTTTACCCATCAAGGGTATTTCAG
1 TCATTTTACCCTTCG-GGGTATTTCAATAATTTTACCCATTAAGGGTATTTCAA
11452430 TCATTTTACCCT
1 TCATTTTACCCT
11452442 ACAGGGGTCT
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 4 0.04
54 96 0.94
55 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (53 bp):
TCATTTTACCCTTCGGGGTATTTCAATAATTTTACCCATTAAGGGTATTTCAA
Found at i:11452374 original size:81 final size:81
Alignment explanation
Indices: 11452284--11452440 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
11452274 TACCTTATAG
* * * * *
11452284 GGGTATTTCGATAATTTTAGCCATTAAGGGTATTTCAATCATTTTACCCTTC-GGGAGTATTTCA
1 GGGTATTTCGATAATTTTACCCATCAAGGGTATTTCAATAATTTTACCCATCAAGG-GTATTTCA
11452348 ATAATTTTACCCATTGA
65 ATAATTTTACCCATTGA
* * * *
11452365 GGGTATTTCGATAATTTTACCCATCGAGGGTATTTTAGTAATTTTACCCATCAAGGGTATTTCAG
1 GGGTATTTCGATAATTTTACCCATCAAGGGTATTTCAATAATTTTACCCATCAAGGGTATTTCAA
*
11452430 TCATTTTACCC
66 TAATTTTACCC
11452441 TACAGGGGTC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACCCATCAAGGGTATTTCAATAATTTTACCCATCAAGGGTATTTCAA
TAATTTTACCCATTGA
Found at i:11455943 original size:19 final size:19
Alignment explanation
Indices: 11455921--11455975 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
11455911 CTCCTGCAAA
11455921 AAAATCAATAGAAAAATTC
1 AAAATCAATAGAAAAATTC
** *
11455940 AAAAAAAATAGAAAAATAC
1 AAAATCAATAGAAAAATTC
*
11455959 AAAATCAA-ATAAAAATT
1 AAAATCAATAGAAAAATT
11455976 TTAAAAAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.71, C:0.07, G:0.04, T:0.18
Consensus pattern (19 bp):
AAAATCAATAGAAAAATTC
Found at i:11466166 original size:735 final size:734
Alignment explanation
Indices: 11464471--11466736 Score: 3263
Period size: 735 Copynumber: 3.1 Consensus size: 734
11464461 CCTCCTATCA
* * * * * * *
11464471 TTTAGTTTCGGAGGTTGCTTGTACTGTAAGAACACACTGCCCTCATTTGTCAAAGCAATAGTCTC
1 TTTAGTTTCCGAGGTAGCTTGTTCTGTAAGAACACACTGCACTCTTTTATCAAAGAAATAGTCTC
* *
11464536 ATACTGACTAAGCCATTTCTTCTTGGACAAAATATCCTTCATAAACATCATGTAGTTGGGCATCT
66 ATACTCACTAAGCCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCATGTAGTTGGGCATCT
** * * *
11464601 ATTCTAAAGCCTCCACCAAAAGGATGTTGATCTAAAGTTACTTTAGAACATCCAAG-ACTTCTTA
131 ATTCTAAAGCCTCCACCAACGGGATGTTGATGTGAAGTTGCTTTAGAACATCCAAGAACTTCTTA
* * *
11464665 AATTGTACCTCTTCTTTCTGCTTATTCTATTGAAGATTTTGAGGATATGGAACTCTAGGTTCATA
196 AATTGTACCTCTTGTTTCTGCTTATTCTGTTGAAGATTTTGAGGATATGGAACTCTAGGTTGATA
* * *
11464730 TGGACAACTTTTCTAAAGAAGTGAATCTAAAAAAGGTGTTAGCTTCTTAGAATTTACTGGTTTAG
261 TGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAGAATTTACTAGTTTAG
* * *
11464795 GGTTTACCTCATCATATTTTTAAGCATCTTATTTTTTTAGAATAAGAACTTCAACTTTTGGCTGA
326 GGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTTAGTATAAGAACTTCAAATTTTGGCTGA
* *
11464860 CTTTCCTCCTTCTCAGTAGGCTCATTTTCAATTACAACCTCCTTGGGTTTCAAAATCTTGCCACT
391 CTTTCCTCCTTCTCAGTAGGCTCATTTTCAATCACAACCTCCTTGGGTTTCAAAATCTTACCACT
* * * *
11464925 TCGTAATACAACCAAATTGCAATGGTTCTTACCCAAACTCCTTGGATTTTCTGTATCGCTCATCA
456 TCGAAATGCAACC-AATTTCAATGCTTCTTACCCAAACTCCTTGGATTTTCTGTATCGCTCATCA
* * * *
11464990 AAGCTCTTTTTGGTTTACTACGAGGCTTTTCCCTCAGGATATGCTAATGAATGATCCGCAAGTTG
520 AAGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGAATGATCCGCAAGTTG
* * ** * *
11465055 AAGTGTCACAATAGTGAGTCTTACTAAACCTATTTCCAATAGATTTAAAATAGATTTGGGCATCA
585 AAGTGTCACAGTAGTGGGTCTTACTTCACCTATTCCCAATAG-TTGAAAATAGATTTGGGCATCA
* *
11465120 AGTTGATGTTAGCTCAAATGTCGTACAAAGCTTCACC-ACAGTAAT-ATTCTCTGATG-TATCAT
649 AGTTGATGTTTGCTCAAATGTCATACAAAGCTTCACCGA-AGT-ATGATTCTCTGATGTTA-CAT
* *
11465182 GGTATCGTAACGCTTCCAGGGTCC
711 GGTATCGTAAAGCTTCTAGGGTCC
** * * * * *
11465206 TTTA-TTTTTGTAGGTAGCTTATTCTATAAGAACATACTGCACTC-TTTAGTTAAAGCAATAGTC
1 TTTAGTTTCCG-AGGTAGCTTGTTCTGTAAGAACACACTGCACTCTTTTA-TCAAAGAAATAGTC
* * *
11465269 TCATACTCATTAACCCATTTCTTCTTGGACAAAATATCGTTCATAAACTTCATGTAGTTGGGCAT
64 TCATACTCACTAAGCCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCATGTAGTTGGGCAT
*
11465334 CTATTCTAAAGCCTCCACCAACGGGATGTTGATGTGGAGTTGCTTTAGAACATCCAAGAACTTCT
129 CTATTCTAAAGCCTCCACCAACGGGATGTTGATGTGAAGTTGCTTTAGAACATCCAAGAACTTCT
* *
11465399 TAAATTGCACCTCTTGTTTCTACTTATTCTGTTGAAGATTTTGAGGATATGGAACTCTAGGTTGA
194 TAAATTGTACCTCTTGTTTCTGCTTATTCTGTTGAAGATTTTGAGGATATGGAACTCTAGGTTGA
* *
11465464 TATGGACAACTTTTCTAAAGAAATAAATCTGAAAAATGTGTTAGCTTCTTAGAATTTACTAGTTT
259 TATGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAGAATTTACTAGTTT
* * *
11465529 AGGGTTTACCTCATCATATTTATCAGCATCTTATTTTTTTAGTGTAAGAACTTCAAATTTTGGTT
324 AGGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTTAGTATAAGAACTTCAAATTTTGGCT
* * * *
11465594 AACTTTCCTGCATCTCAGTAGGCTCATTTTCAATCACAACCTCCATGGGTTTCAAAATCTTACCA
389 GACTTTCCTCCTTCTCAGTAGGCTCATTTTCAATCACAACCTCCTTGGGTTTCAAAATCTTACCA
* *
11465659 CTTCGGAATGCAACCAATTCTCAATGCTTCTTACCCAAACTCCTTAGATTTTCTGTATCGCTCAT
454 CTTCGAAATGCAACCAATT-TCAATGCTTCTTACCCAAACTCCTTGGATTTTCTGTATCGCTCAT
* * * ** *
11465724 CAAAGCTCTTTGTGGTCTACTACGAATCTTTTCCTTCAGGATATGCTAACGAAAG-TTTGCAAAT
518 CAAAGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGAATGATCCGCAAGT
*
11465788 TGAAGTGTCACAGTAGTGGGTCTTACTTCACTTATTCCCAATAGTTCGAAAATAGATTTGGGCAT
583 TGAAGTGTCACAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTT-GAAAATAGATTTGGGCAT
* *
11465853 CAATTTGATGTTTGCTCAAATGTCATACAAAGCTTCACCGAAATATGATTCTCTGATGTTACATG
647 CAAGTTGATGTTTGCTCAAATGTCATACAAAGCTTCACCGAAGTATGATTCTCTGATGTTACATG
* *
11465918 GTATTGTAATGCTTCTAGGGTCC
712 GTATCGTAAAGCTTCTAGGGTCC
* * *
11465941 TTTAGTTTCCAAGGTGGCTTGTTCTGTAAGAACACACTGCACTCTTTTATCAAAGAAATAATCTC
1 TTTAGTTTCCGAGGTAGCTTGTTCTGTAAGAACACACTGCACTCTTTTATCAAAGAAATAGTCTC
* * * *
11466006 ATATTCAGTAAGCCATTTCTTCTTAGTCAAAATATCCTTCATAAACTTCATGTAGTTGGGCATCT
66 ATACTCACTAAGCCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCATGTAGTTGGGCATCT
*
11466071 ATTCTAAAGCCTCCACCAACGGGATGTTGATGTGAAGTTGCTTTAGAACATCCAAGAACTTTTTA
131 ATTCTAAAGCCTCCACCAACGGGATGTTGATGTGAAGTTGCTTTAGAACATCCAAGAACTTCTTA
* *
11466136 AATTGTACCTCTTGTTTCTGCTTATTCTGTTGAATG-TTTTGAGGATATGGAAATCTAGGTTGAG
196 AATTGTACCTCTTGTTTCTGCTTATTCTGTTGAA-GATTTTGAGGATATGGAACTCTAGGTTGAT
* *
11466200 ATGGACAACTTTTCTAAAGAAGTAAGTCTGAAAAAGGTGTTAGCTTCATAGAATTTACTAGTTTA
260 ATGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAGAATTTACTAGTTTA
* * *
11466265 GGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTCAGTATAAGAACTTTAAGTTTTGGCTG
325 GGGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTTAGTATAAGAACTTCAAATTTTGGCTG
* * * * ** * * *
11466330 ACATTCTTCCTTTTCAGTACGCTCAAATTAAATCACAACCTCCTTTGATTTCAAAATCTTACCAC
390 ACTTTCCTCCTTCTCAGTAGGCTCATTTTCAATCACAACCTCCTTGGGTTTCAAAATCTTACCAC
* *
11466395 TTCGAAATGCAACCAATTTGCAATGCTTCGTACCCAAACTCCTTGGATTTTCTGTATCGCTCAGC
455 TTCGAAATGCAACCAATTT-CAATGCTTCTTACCCAAACTCCTTGGATTTTCTGTATCGCTCATC
* *
11466460 AAAGCTCTTTGTGATCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGAATGATCCGCGAGTT
519 AAAGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGAATGATCCGCAAGTT
* * *
11466525 AAAGTGTCATAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTTTGAAAATAGATTTAGGCATC
584 GAAGTGTCACAGTAGTGGGTCTTACTTCACCTATTCCCAATAG-TTGAAAATAGATTTGGGCATC
* * * * *
11466590 AAGTTGATGTTTGCTCAAATGTCATACAAAGCTTTACTGCAGTAAGATTCTCTAATGTTACATGG
648 AAGTTGATGTTTGCTCAAATGTCATACAAAGCTTCACCGAAGTATGATTCTCTGATGTTACATGG
* *
11466655 TATCGGAAAGCTTCTAGTGTCC
713 TATCGTAAAGCTTCTAGGGTCC
* * * *
11466677 GTTAG-TTCCGGAGGTAGCTTGTTCTGTAAGAACACACTACATTCTTTTTTCAAAGCAAAT
1 TTTAGTTTCC-GAGGTAGCTTGTTCTGTAAGAACACACTGCACTCTTTTATCAAAG-AAAT
11466737 TATCCTTCAT
Statistics
Matches: 1365, Mismatches: 150, Indels: 30
0.88 0.10 0.02
Matches are distributed among these distances:
734 12 0.01
735 805 0.59
736 542 0.40
737 6 0.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (734 bp):
TTTAGTTTCCGAGGTAGCTTGTTCTGTAAGAACACACTGCACTCTTTTATCAAAGAAATAGTCTC
ATACTCACTAAGCCATTTCTTCTTGGACAAAATATCCTTCATAAACTTCATGTAGTTGGGCATCT
ATTCTAAAGCCTCCACCAACGGGATGTTGATGTGAAGTTGCTTTAGAACATCCAAGAACTTCTTA
AATTGTACCTCTTGTTTCTGCTTATTCTGTTGAAGATTTTGAGGATATGGAACTCTAGGTTGATA
TGGACAACTTTTCTAAAGAAGTAAATCTGAAAAAGGTGTTAGCTTCTTAGAATTTACTAGTTTAG
GGTTTACCTCATCATATTTTTCAGCATCTTATTTTTTTAGTATAAGAACTTCAAATTTTGGCTGA
CTTTCCTCCTTCTCAGTAGGCTCATTTTCAATCACAACCTCCTTGGGTTTCAAAATCTTACCACT
TCGAAATGCAACCAATTTCAATGCTTCTTACCCAAACTCCTTGGATTTTCTGTATCGCTCATCAA
AGCTCTTTGTGGTCTACTACGAAGCTTTTCCCTCAGGATATGCTAACGAATGATCCGCAAGTTGA
AGTGTCACAGTAGTGGGTCTTACTTCACCTATTCCCAATAGTTGAAAATAGATTTGGGCATCAAG
TTGATGTTTGCTCAAATGTCATACAAAGCTTCACCGAAGTATGATTCTCTGATGTTACATGGTAT
CGTAAAGCTTCTAGGGTCC
Found at i:11473842 original size:40 final size:40
Alignment explanation
Indices: 11473744--11474046 Score: 414
Period size: 40 Copynumber: 7.6 Consensus size: 40
11473734 TCCTCGTTCA
* * * * *
11473744 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
11473783 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
11473823 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
11473863 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
11473903 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
11473943 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
11473983 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
11474023 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
11474047 CAGCATTCAA
Statistics
Matches: 242, Mismatches: 18, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
39 38 0.16
40 196 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Done.