Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 39 of 185
Found at i:11481825 original size:40 final size:40
Alignment explanation
Indices: 11481725--11481989 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
11481715 GCTCCTCGTT
* * * *
11481725 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
11481765 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
11481804 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
11481844 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
11481884 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
11481924 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
11481965 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
11481990 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:11481949 original size:80 final size:80
Alignment explanation
Indices: 11481692--11481989 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
11481682 AAATCACGTA
* ** * * *
11481692 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
11481754 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
11481770 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
11481833 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
11481850 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
11481914 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
11481930 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
11481990 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:11481998 original size:41 final size:41
Alignment explanation
Indices: 11481921--11481998 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
11481911 TTTGTATCTC
* * *
11481921 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
11481962 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
11481999 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:11492526 original size:889 final size:889
Alignment explanation
Indices: 11490507--11492702 Score: 3250
Period size: 889 Copynumber: 2.5 Consensus size: 889
11490497 AGTAATTAAT
* * * * *
11490507 ATTTTGATGTCTGTTTGCTTAATTAAGTAAAAAGAACTAAATCGTAAATGCTGCAAAACTTAAGC
1 ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGC-AAAGTTAAGC
* *
11490572 ACTATTGGTTTATTTGTATTAAATAGATATAAAATGATGAATTAAGGGATTTATATAGTAATTAG
65 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAG
* ** * *
11490637 AACTATTTAGATTATGGTGGACAGTTA-TGCCTTTTAATTATGAAATTTTAATTGTTCTTAAAGG
130 ACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGG
* *
11490701 TTAAAATAGTAAATTAATTGATGAATC-----AAAACAAAAAA-AAAAGCATGTGGTCATCTACT
195 TTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTACT
* * *
11490760 GTGCAAGAATACCATTTTCAAA-TCAAATATCTTTCCAACAATTGGTATCAAGAGTCAGGTTGTG
260 GTGCAAGAATACTATTTTCAAACT-GAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGTG
* * * *
11490824 CTATGTTTATGATGTAAAACGAGACCGAATCTTTCTCTTCATCTTGTTTGATTAATATTTAATAA
324 CTATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAA
11490889 GATGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATA
389 GATGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATA
*
11490954 TATTTGTTATATAATAATTAATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAATTGTATACTA
454 TATTTGTTATATAATAATTAATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAACTGTATACTA
* *
11491019 TCATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACGGACATAGGATA
519 TCATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACAGACATAGGACA
* *
11491084 TAAATGTAATTTTTCCAAAAAGGAGTCCATGATGAGGAGAAGATAGAGCGATGGCGGTCGAAGAC
584 TAAATGTAATTTTTCCAAAAAGGAGTCCAAGATGAGGAGAAGATAGAGCGATGACGGTCGAAGAC
* * *
11491149 ACAAAGAAAAGGAATGTCTTATAATGAAAAACTATGTAATTTTTTATTTTTCATTTATTTTCTAA
649 AC-----AAAGGAATGCCTTATAATGAAAAACTATATAA-TTTTTATTTTTCATTTATTTTATAA
** * * * ** *
11491214 AAATAGAATGATAGAGACATTGGCTGATAATTTTATTTTGTTACCCATTTGTAACAACTCGTTTT
708 AAATAGAACAATAGAGACATTAGCTGACAATTTTATTTTGTTACCCATCTACAACAACTCGTTTC
* * * *
11491279 TAGTGGTATCAAAAACAGTGGTTTTAGGACCATGATTTCAATCAATGAGTCAGTATTATGCTATT
773 CAGTGGTATAAAAAACAGTGGTTTCAGGACCACGATTTCAATCAATGAGTCAGTATTATGCTATT
* *
11491344 TATTTAATATTTATGAGTCTATTATAGTGTCGTAAAAAAGTTTGGTTTAAAA
838 TATTTAATATTTATAAGTCTATTAAAGTGTCGTAAAAAAGTTTGGTTTAAAA
*
11491396 ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCATAAAAGCTGCTAAAGTTAAGC
1 ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGC-AAAGTTAAGC
*
11491461 ACTACAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAG
65 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAG
* *
11491526 ACCTATTTAGATTATGGTGGACCGTTAGTGGGTTTTAATTATGAAATTTTAGTTATTTTTAAAGG
130 ACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGG
* * *
11491591 TTAAAACAGTAAATCAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTCCT
195 TTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTACT
* * * * * *
11491656 ATGCAAGAATACTGTTTTCAAACTGGATATTTTTCCAGCAATTGGTATCAAGAGTTACGTTGTGC
260 GTGCAAGAATACTATTTTCAAACTGAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGTGC
* *
11491721 TATGTTTATGGTGTAAAATGAGACCGAATCTCTCTCTTCATTTTATTTGATTAATATTTGATAAG
325 TATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAAG
*
11491786 ATGTGACATCCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATAT
390 ATGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATAT
* * *
11491851 ATTTGTTATATAATAATTATTTTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAGACTGTATATTA
455 ATTTGTTATATAATAATTA-ATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAACTGTATACTA
** * * * *
11491916 TCATCTCCGTATAGGATTATTTTTTATTTTTTGAATTCTTGTGAGCTAGAAACAGACGTAGGACA
519 TCATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACAGACATAGGACA
* * * *
11491981 TAAATGTAATTTTTTCAAACAGGATTCCAAGATGAGGAGAAGAT-GAAGCGATGATGGTCGAAGA
584 TAAATGTAATTTTTCCAAAAAGGAGTCCAAGATGAGGAGAAGATAG-AGCGATGACGGTCGAAGA
* * *
11492045 TAC-AAGGAATGCCTTATGATGAAAAACTGTATAA-TTTT-TTTTTCATTTATTTTATAAAAATA
648 CACAAAGGAATGCCTTATAATGAAAAACTATATAATTTTTATTTTTCATTTATTTTATAAAAATA
*
11492107 GAACAATAGAGACATTAGCTGACAATTTTATTTTGTTACCTATCTACAACAACTCGTTTCCAGTG
713 GAACAATAGAGACATTAGCTGACAATTTTATTTTGTTACCCATCTACAACAACTCGTTTCCAGTG
* * * * *
11492172 GTATAAAAAATAGTGGTTTCGGGACCACGATTTCGATCAATGAGTTAGTATTAT-ATCATTTATT
778 GTATAAAAAACAGTGGTTTCAGGACCACGATTTCAATCAATGAGTCAGTATTATGCT-ATTTATT
*
11492236 TAATATTTATAAGTCTATTAAAGTGTCGTAATAAAGTTTGGTTTAAAA
842 TAATATTTATAAGTCTATTAAAGTGTCGTAAAAAAGTTTGGTTTAAAA
* * * *
11492284 ATTTTGCTTTTTTGGTTGCTTAATTAAGTAAAAAGGACGAAATCGTAAAAGCTACAAGAGTTAAG
1 ATTTTG-ATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAA-AGTTAAG
* * * **
11492349 CACTATGGGCTTATTTGTATTAAATTGATATAAAATCATGAATTAAGATATTTATATAGTAATTA
64 CACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTA
*
11492414 GACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAA
129 GACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAG
* * *
11492479 GTTAAAATACTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCTTCTGC
194 GTTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTAC
* *
11492544 TGTGCAAGAATA-TCATTTTCAAACCGAATATTTTTCCAACAATTGGTATCAAAAGTCAGGTTGT
259 TGTGCAAGAATACT-ATTTTCAAACTGAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGT
* *
11492608 GCTATGTTTATTGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGAAA
323 GCTATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATA
* *
11492673 AGATGTTACATTCTTGTAGTTATTCGCATG
388 AGATGTGACATTCTTGTAGTTATTTGCATG
11492703 GGAATGTATG
Statistics
Matches: 1176, Mismatches: 117, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
887 1 0.00
888 186 0.16
889 522 0.44
890 55 0.05
891 27 0.02
895 11 0.01
896 217 0.18
897 157 0.13
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (889 bp):
ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAAAGTTAAGCA
CTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAGA
CCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGGT
TAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTACTG
TGCAAGAATACTATTTTCAAACTGAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGTGCT
ATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAAGA
TGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATATA
TTTGTTATATAATAATTAATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAACTGTATACTATC
ATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACAGACATAGGACATA
AATGTAATTTTTCCAAAAAGGAGTCCAAGATGAGGAGAAGATAGAGCGATGACGGTCGAAGACAC
AAAGGAATGCCTTATAATGAAAAACTATATAATTTTTATTTTTCATTTATTTTATAAAAATAGAA
CAATAGAGACATTAGCTGACAATTTTATTTTGTTACCCATCTACAACAACTCGTTTCCAGTGGTA
TAAAAAACAGTGGTTTCAGGACCACGATTTCAATCAATGAGTCAGTATTATGCTATTTATTTAAT
ATTTATAAGTCTATTAAAGTGTCGTAAAAAAGTTTGGTTTAAAA
Found at i:11492789 original size:15 final size:15
Alignment explanation
Indices: 11492769--11492799 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11492759 AAACCAAAAA
11492769 AAATAAAAGTCCAAT
1 AAATAAAAGTCCAAT
*
11492784 AAATAACAGTCCAAT
1 AAATAAAAGTCCAAT
11492799 A
1 A
11492800 CAGCCCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.16, G:0.06, T:0.19
Consensus pattern (15 bp):
AAATAAAAGTCCAAT
Found at i:11496152 original size:19 final size:19
Alignment explanation
Indices: 11496128--11496174 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
11496118 AACGTCTCTT
*
11496128 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
11496147 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
11496166 TATGCATTA
1 TTTGCATTA
11496175 AAATCCACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:11502186 original size:20 final size:20
Alignment explanation
Indices: 11502161--11502201 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
11502151 GTACAGAAAA
11502161 GTTCAAGCTGCGATATCTGG
1 GTTCAAGCTGCGATATCTGG
11502181 GTTCAAGCTGCGATATCTGG
1 GTTCAAGCTGCGATATCTGG
11502201 G
1 G
11502202 GCACCTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.29
Consensus pattern (20 bp):
GTTCAAGCTGCGATATCTGG
Found at i:11503514 original size:142 final size:143
Alignment explanation
Indices: 11503239--11503639 Score: 558
Period size: 143 Copynumber: 2.8 Consensus size: 143
11503229 CTTGGCATTT
11503239 CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
1 CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
* * * * *
11503304 ATTGAAGCCGCCAAACCTCATCTCCCTA-AAGTTGCAGCGGAGTAGACTGAAGACTACGAATCTT
66 ATTGAAGCCACC-AGCCTTATCTCCC-AGAAGTTGCAGCGGAGTAGATTGAAGACTACAAATCTT
* *
11503368 ATTTCCCTAGTGTTG
129 ATTTCCCTAGCGTTA
* * * *
11503383 TAGTGGAATAGATTAAAGCTACAAATTATGGCGGATCTTAT-TTCCTGAAGTTGCAGTGGAGTAG
1 CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
*
11503447 ATTAAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGAC-AGCAAATCTTA
66 ATTGAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGACTA-CAAATCTTA
* *
11503511 TTTCTCTGGCGTTA
130 TTTCCCTAGCGTTA
* * * *
11503525 CAATGGAACATATTAGAGCTAAAAATTATGG-ATGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
1 CAGTGGAACAGATTAAAGCTACAAATTATGGCA-GATCTTATCTTCCTGAAGTTGCAGTGGAGCA
* *
11503589 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
65 GATTGAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAA
11503640 ATTATCAATT
Statistics
Matches: 228, Mismatches: 25, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
141 2 0.01
142 87 0.38
143 101 0.44
144 38 0.17
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (143 bp):
CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
ATTGAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGACTACAAATCTTAT
TTCCCTAGCGTTA
Found at i:11503688 original size:143 final size:140
Alignment explanation
Indices: 11503239--11503693 Score: 492
Period size: 143 Copynumber: 3.2 Consensus size: 140
11503229 CTTGGCATTT
*
11503239 CAGTGGAACAGATTA-AAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
1 CAGTGGAATAGATTAGAAGCTACAAATTATGG-AGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
* * * * *
11503303 GATTGAAGCCGCCAAACCTCATCTCCCTAAAGTTGCAGCGGAGTAGACTGAAGACTACGAATCTT
65 GATTGAAGCCACC-AGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGA-TAC-AATCTT
* * *
11503368 ATTTCCCT-AGTGTTG
127 A-TTCCTTGA-AGTTA
* * *
11503383 TAGTGGAATAGATTA-AAGCTACAAATTATGGCGGATCTTAT-TTCCTGAAGTTGCAGTGGAGTA
1 CAGTGGAATAGATTAGAAGCTACAAATTATGG-AGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
* * *
11503446 GATTAAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGACAGCAAATCTTA
65 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGATA-C-AATCTTA
* **
11503511 TTTCTCTGGCGTTA
128 TTCCT-TGAAGTTA
* * * *
11503525 CAATGGAACATATTAG-AGCTAAAAATTATGGATGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
1 CAGTGGAATAGATTAGAAGCTACAAATTATGGA-GATCTTATCTTCCTGAAGTTGCAGTGGAGCA
*
11503589 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA-ATTATCAATTCTT
65 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGA-TA-CAA-TCTT
*
11503653 ATCTCCTTGAAGTTC
127 AT-TCCTTGAAGTTA
* *
11503668 CAGCGGAGTAGA-TAGAAGCTACAAAT
1 CAGTGGAATAGATTAGAAGCTACAAAT
11503694 CTCTTCTCTC
Statistics
Matches: 261, Mismatches: 40, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
141 4 0.02
142 86 0.33
143 130 0.50
144 41 0.16
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (140 bp):
CAGTGGAATAGATTAGAAGCTACAAATTATGGAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
ATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGATACAATCTTATTC
CTTGAAGTTA
Found at i:11503981 original size:11 final size:12
Alignment explanation
Indices: 11503964--11504003 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
11503954 CGGGCCCAAT
11503964 TAAATAAACAAA
1 TAAATAAACAAA
11503976 -AAATAAACCAAA
1 TAAATAAA-CAAA
*
11503988 TAAAAAAACAAA
1 TAAATAAACAAA
11504000 TAAA
1 TAAA
11504004 AGTCCAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 7 0.28
12 12 0.48
13 6 0.24
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (12 bp):
TAAATAAACAAA
Found at i:11505232 original size:17 final size:16
Alignment explanation
Indices: 11505206--11505237 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
11505196 TTAAATGCAC
11505206 TTTTTTTATTTTTATT
1 TTTTTTTATTTTTATT
11505222 TTTTCTTTATTTTTAT
1 TTTT-TTTATTTTTAT
11505238 GTAATTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTTATTTTTATT
Found at i:11508450 original size:12 final size:11
Alignment explanation
Indices: 11508429--11508461 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
11508419 TTAAACTAAG
11508429 TAAAAAATAAA
1 TAAAAAATAAA
11508440 TAAATAAATAAA
1 TAAA-AAATAAA
11508452 T-AAAAATAAA
1 TAAAAAATAAA
11508462 ACTTTACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.33
11 6 0.29
12 8 0.38
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:11512529 original size:7 final size:7
Alignment explanation
Indices: 11512517--11512541 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11512507 ATTTGATTGA
11512517 TATTTAG
1 TATTTAG
11512524 TATTTAG
1 TATTTAG
11512531 TATTTAG
1 TATTTAG
11512538 TATT
1 TATT
11512542 ATGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:11514678 original size:80 final size:79
Alignment explanation
Indices: 11514594--11514765 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
11514584 GGACTAAGAT
*
11514594 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
11514658 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
11514674 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
11514739 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
11514753 CCGAAGGCATTTG
1 CCGAAGGCATTTG
11514766 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:11514745 original size:39 final size:39
Alignment explanation
Indices: 11514541--11514763 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
11514531 TTGAATGTTG
* * * * *
11514541 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
11514581 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
11514620 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
11514661 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
11514701 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
11514740 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
11514764 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:11514783 original size:79 final size:80
Alignment explanation
Indices: 11514621--11514798 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
11514611 AGATACAAAT
* * * *
11514621 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
11514686 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
11514701 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
11514765 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
11514780 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
11514799 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:11516362 original size:18 final size:17
Alignment explanation
Indices: 11516332--11516374 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
11516322 GATGCAAGTG
*
11516332 TGTTCCTAGCCCTTATA
1 TGTTCCTAACCCTTATA
11516349 TGTTCCCTAACCCTTATA
1 TGTT-CCTAACCCTTATA
11516367 TGTATCCT
1 TGT-TCCT
11516375 TTTCCGAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 18 0.78
19 1 0.04
ACGTcount: A:0.19, C:0.30, G:0.09, T:0.42
Consensus pattern (17 bp):
TGTTCCTAACCCTTATA
Found at i:11516811 original size:43 final size:44
Alignment explanation
Indices: 11516759--11516857 Score: 137
Period size: 44 Copynumber: 2.2 Consensus size: 44
11516749 TTATTTGTAC
* * *
11516759 AAATATTTTGAA-TATTTTGATATTATTTTATGTAAAAAAATAG
1 AAATTTTTTGAATTATTTTGATATTATTTGATGTAAAAAAACAG
*
11516802 AAATTTTTTGAATTATTTTGATATTATTTGATGTAATAAAACAG
1 AAATTTTTTGAATTATTTTGATATTATTTGATGTAAAAAAACAG
*
11516846 AAGTTTATTTGA
1 AAATTT-TTTGA
11516858 TGTAATAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
43 11 0.22
44 33 0.67
45 5 0.10
ACGTcount: A:0.40, C:0.01, G:0.11, T:0.47
Consensus pattern (44 bp):
AAATTTTTTGAATTATTTTGATATTATTTGATGTAAAAAAACAG
Found at i:11516945 original size:23 final size:23
Alignment explanation
Indices: 11516918--11517464 Score: 507
Period size: 23 Copynumber: 22.6 Consensus size: 23
11516908 TTAAAAATCC
*
11516918 AAAACCATAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
* *
11516941 AAAACCTTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
11516964 AAAACCATAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
* * *
11516987 AAAACCCTAAACCCTTAATTAAAAATC
1 AAAACCCT-AA-CC-TAATT-TAATTA
** *
11517014 CTAACCCTAACCTAATTCAATTA
1 AAAACCCTAACCTAATTTAATTA
*
11517037 AAAACCCTAAACC---CTTAACTTA
1 AAAACCCT-AACCTAATTTAA-TTA
11517059 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
11517082 AAAACCTAGCCTAACCTAATTTAATTA
1 AAAA-C---CCTAACCTAATTTAATTA
* *
11517109 AAAACCCTAGCCTAATTTAATTT
1 AAAACCCTAACCTAATTTAATTA
*
11517132 AAAATCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
11517155 AAAACCCTTTAAAAACCCTAACCTAATTTAATTA
1 AAAACCC--T---AA-CCT-A----ATTTAATTA
*
11517189 AAAACCCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
11517212 AAAAACCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
11517235 AAAATCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
11517258 AAAACCCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
11517281 AAAACCCTAACCCTAACCTAATTCAATTA
1 AAAACCCTAA-CCTAA--T--TT-AATTA
* **
11517310 AAAACCCTAA-AT-CCTTAACTTA
1 AAAACCCTAACCTAATTTAA-TTA
11517332 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
11517355 AAAACCCTAGCCTAACCTAATTTAATTA
1 AAAA--C---CCTAACCTAATTTAATTA
*
11517383 AAAACCCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
11517406 AAAACCCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
11517429 AAAACCCTAAACCCTTAA-TT--TTA
1 AAAACCCT-AA-CC-TAATTTAATTA
11517452 AAAACCCTAACCT
1 AAAACCCTAACCT
11517465 TAACGTAATG
Statistics
Matches: 444, Mismatches: 39, Indels: 85
0.78 0.07 0.15
Matches are distributed among these distances:
20 1 0.00
21 11 0.02
22 28 0.06
23 256 0.58
24 26 0.06
25 10 0.02
26 13 0.03
27 33 0.07
28 29 0.07
29 19 0.04
30 1 0.00
32 1 0.00
34 16 0.04
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.29
Consensus pattern (23 bp):
AAAACCCTAACCTAATTTAATTA
Found at i:11517006 original size:21 final size:20
Alignment explanation
Indices: 11516957--11517021 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
11516947 TTAGCCTAAT
* *
11516957 TTAATTAAAAACCATAACCTAAT
1 TTAATTAAAAACCCTAACC---C
11516980 TTAATTAAAAACCCTAAACCC
1 TTAATTAAAAACCCT-AACCC
*
11517001 TTAATTAAAAATCCTAACCC
1 TTAATTAAAAACCCTAACCC
11517021 T
1 T
11517022 AACCTAATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
20 6 0.16
21 14 0.37
23 14 0.37
24 4 0.11
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (20 bp):
TTAATTAAAAACCCTAACCC
Found at i:11517019 original size:20 final size:21
Alignment explanation
Indices: 11516980--11517021 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
11516970 ATAACCTAAT
11516980 TTAATTAAAAACCCTAAACCC
1 TTAATTAAAAACCCTAAACCC
*
11517001 TTAATTAAAAATCCT-AACCC
1 TTAATTAAAAACCCTAAACCC
11517021 T
1 T
11517022 AACCTAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (21 bp):
TTAATTAAAAACCCTAAACCC
Found at i:11517038 original size:50 final size:51
Alignment explanation
Indices: 11516966--11517070 Score: 176
Period size: 50 Copynumber: 2.1 Consensus size: 51
11516956 TTTAATTAAA
* *
11516966 AACCATAACCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAATCCT
1 AACCATAACCTAATTCAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
*
11517016 AACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
1 AACCATAACCTAATTCAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
11517067 AACC
1 AACC
11517071 TAATTTAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
50 37 0.73
51 14 0.27
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.25
Consensus pattern (51 bp):
AACCATAACCTAATTCAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
Found at i:11517068 original size:72 final size:69
Alignment explanation
Indices: 11516980--11517292 Score: 192
Period size: 80 Copynumber: 4.3 Consensus size: 69
11516970 ATAACCTAAT
11516980 TTAATTAAAAACCCTAAACC-CTTAATTAAAAATCCTAACCCTAACCTAATTCAATTAAAAACCC
1 TTAATTAAAAACCCT-AACCACTTAATTAAAAA-CCT-ACCCTAACCTAATTCAATTAAAAACCC
11517044 TAAACCC
63 TAAACCC
* * *
11517051 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCTAGCCTAACCTAATTTAATTAAAAACCC
1 TTAA-TTAAAAACCCTAACC--ACTTAATTAAAAACCTACCCTAACCTAATTCAATTAAAAACCC
* *
11517116 T-AGCCTAAT
63 TAAACC---C
* * * *
11517125 TTAATTTAAAATCCTAACCTAATTTAATTAAAAACCCTTTAAAAACCCTAACCTAATTTAATTAA
1 TTAATTAAAAACCCTAACC--ACTTAATTAAAAA-CC--T----ACCCTAACCTAATTCAATTAA
* *
11517190 AAACCCT-AGCCTAAT
57 AAACCCTAAACC---C
* * *
11517205 TTAATTAAAAAACCTAACCTAATTTAATTAAAAA--T--CCTAACCTAATTTAATTAAAAACCCT
1 TTAATTAAAAACCCTAACC--ACTTAATTAAAAACCTACCCTAACCTAATTCAATTAAAAACCCT
* *
11517266 -AGCCTAAT
64 AAACC---C
11517274 TTAATTAAAAACCCTAACC
1 TTAATTAAAAACCCTAACC
11517293 CTAACCTAAT
Statistics
Matches: 217, Mismatches: 11, Indels: 30
0.84 0.04 0.12
Matches are distributed among these distances:
69 52 0.24
71 11 0.05
72 37 0.17
73 31 0.14
74 17 0.08
75 1 0.00
76 1 0.00
80 67 0.31
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (69 bp):
TTAATTAAAAACCCTAACCACTTAATTAAAAACCTACCCTAACCTAATTCAATTAAAAACCCTAA
ACCC
Found at i:11517177 original size:34 final size:34
Alignment explanation
Indices: 11517132--11517196 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
11517122 AATTTAATTT
*
11517132 AAAATCCTAACCTAATTTAATTAAAAACCCTTTA
1 AAAACCCTAACCTAATTTAATTAAAAACCCTTTA
11517166 AAAACCCTAACCTAATTTAATTAAAAACCCT
1 AAAACCCTAACCTAATTTAATTAAAAACCCT
11517197 AGCCTAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (34 bp):
AAAACCCTAACCTAATTTAATTAAAAACCCTTTA
Found at i:11517455 original size:171 final size:165
Alignment explanation
Indices: 11517163--11517473 Score: 464
Period size: 171 Copynumber: 1.8 Consensus size: 165
11517153 TAAAAACCCT
11517163 TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAAACCTAACCTAAT
1 TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAAACCTAACCTAAT
* *
11517228 TTAATTAAAAATCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAACC
66 TTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTACCCTAATTT-ATTAAAAACCCTAACC
11517293 CTAACCTAATTCAATTAAAAACCCTAAATCCTTAAC
130 CTAACCTAATTCAATTAAAAACCCTAAATCCTTAAC
* *
11517329 TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAACCTAATTTAATTAAAAACCCTAGC
1 TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAG-----CCTAATTTAATTAAAAAACCTAAC
*
11517394 CTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAA-TT-TTAAAAAC
61 CTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT--ACCC-TAATTTATTAAAAAC
* *
11517457 CCTAACCTTAACGTAAT
123 CCTAACCCTAACCTAAT
11517474 GTTAGATTTG
Statistics
Matches: 130, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
166 36 0.28
171 86 0.66
173 5 0.04
174 3 0.02
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (165 bp):
TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAAACCTAACCTAAT
TTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTACCCTAATTTATTAAAAACCCTAACCC
TAACCTAATTCAATTAAAAACCCTAAATCCTTAAC
Found at i:11517612 original size:116 final size:116
Alignment explanation
Indices: 11517470--11517687 Score: 382
Period size: 116 Copynumber: 1.9 Consensus size: 116
11517460 AACCTTAACG
* *
11517470 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATA
1 TAATGTTAGATTTGGAAAAATATTTTGACTGGTACTAACAAATAATAATTGTACATAATTTGATA
11517535 ATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
66 ATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
* * * *
11517586 TAATGTTAGATTTGGAAAAATATTTTGACTGGTACTAATAATTAATAATTGTATATGATTTGATA
1 TAATGTTAGATTTGGAAAAATATTTTGACTGGTACTAACAAATAATAATTGTACATAATTTGATA
11517651 ATTTTACTAACCATTAATACAATTTTTTGACTTAATA
66 ATTTTACTAACCATTAATACAATTTTTTGACTTAATA
11517688 CAATTTATCA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 96 1.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.43
Consensus pattern (116 bp):
TAATGTTAGATTTGGAAAAATATTTTGACTGGTACTAACAAATAATAATTGTACATAATTTGATA
ATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
Found at i:11517704 original size:17 final size:18
Alignment explanation
Indices: 11517663--11517704 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
11517653 TTTACTAACC
* *
11517663 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
11517681 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
11517698 ATTAATA
1 ATTAATA
11517705 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:11520900 original size:124 final size:126
Alignment explanation
Indices: 11520717--11521094 Score: 532
Period size: 126 Copynumber: 3.0 Consensus size: 126
11520707 CCCAAACATT
*
11520717 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCGAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
11520782 TAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAA-AA-TATTTCTTAC-ATGAC
66 TAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTT-CTATGAC
* * * * * * *
11520841 CTACTGTAGCAAAAGTGC-ACTGACGAGGCCGCAATTTCACAAATGCTTCTCAAATAGCATCCCG
1 CTACTGTAGCAAAAGCGCGTC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
11520905 CTAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCTGTGAC
65 CTAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCTATGAC
*
11520967 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATACCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
** **** *
11521032 TAGAAGCGATTTTATATTATTTTATCAGAAACGTCAACTCGA-AATTATTTCTTCTAGGAC
66 TAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCTATGAC
11521092 CTA
1 CTA
11521095 AAAACCCTTA
Statistics
Matches: 220, Mismatches: 29, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
123 1 0.00
124 95 0.43
125 22 0.10
126 101 0.46
127 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (126 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCTATGAC
Found at i:11521405 original size:12 final size:12
Alignment explanation
Indices: 11521370--11521409 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
11521360 TTGCCCGTTT
11521370 GTAATATTTTCA
1 GTAATATTTTCA
11521382 GT-A-A-TTTC-
1 GTAATATTTTCA
11521390 GTAATATTTTCA
1 GTAATATTTTCA
11521402 GTAATATT
1 GTAATATT
11521410 GAATTCTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
8 2 0.08
9 5 0.21
10 2 0.08
11 5 0.21
12 10 0.42
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (12 bp):
GTAATATTTTCA
Found at i:11522057 original size:38 final size:38
Alignment explanation
Indices: 11522004--11522081 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
11521994 CTAATATAAA
11522004 AATAAATTGACGTATTTATTTTTTAAACATGTATGATT
1 AATAAATTGACGTATTTATTTTTTAAACATGTATGATT
* *
11522042 AATAAATTGATGTATTTATTTTTTAAATATGTATGATT
1 AATAAATTGACGTATTTATTTTTTAAACATGTATGATT
11522080 AA
1 AA
11522082 ATCAAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (38 bp):
AATAAATTGACGTATTTATTTTTTAAACATGTATGATT
Found at i:11522073 original size:19 final size:19
Alignment explanation
Indices: 11522015--11522075 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
11522005 ATAAATTGAC
*
11522015 GTATTTATTTTTTAAACAT
1 GTATTTATTTTTTAAATAT
* **
11522034 GTA-TGA-TTAATAAATTGAT
1 GTATTTATTTTTTAAA-T-AT
11522053 GTATTTATTTTTTAAATAT
1 GTATTTATTTTTTAAATAT
11522072 GTAT
1 GTAT
11522076 GATTAAATCA
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
17 6 0.19
18 2 0.06
19 14 0.45
20 3 0.10
21 6 0.19
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (19 bp):
GTATTTATTTTTTAAATAT
Found at i:11531354 original size:15 final size:15
Alignment explanation
Indices: 11531334--11531362 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11531324 AAATTTGTTG
11531334 AAGATGGCTCAATAA
1 AAGATGGCTCAATAA
11531349 AAGATGGCTCAATA
1 AAGATGGCTCAATA
11531363 TTCAGCCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.21
Consensus pattern (15 bp):
AAGATGGCTCAATAA
Found at i:11531816 original size:31 final size:31
Alignment explanation
Indices: 11531780--11531843 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
11531770 AAAATTTTTA
*
11531780 AAAATGTAA-AAAAGACTAAATTGAATGAAAT
1 AAAATG-AATAAAAGAATAAATTGAATGAAAT
**
11531811 AAAATGAATAAATTAATAAATTGAATGAAAT
1 AAAATGAATAAAAGAATAAATTGAATGAAAT
11531842 AA
1 AA
11531844 TTAATTTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.62, C:0.02, G:0.11, T:0.25
Consensus pattern (31 bp):
AAAATGAATAAAAGAATAAATTGAATGAAAT
Found at i:11531844 original size:17 final size:17
Alignment explanation
Indices: 11531796--11531849 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
11531786 TAAAAAAGAC
11531796 TAAATTGAATGAAAT-A
1 TAAATTGAATGAAATAA
11531812 -AAA-TGAAT-AAATTAA
1 TAAATTGAATGAAA-TAA
11531827 TAAATTGAATGAAATAA
1 TAAATTGAATGAAATAA
*
11531844 TTAATT
1 TAAATT
11531850 TAGATCAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
13 3 0.09
14 6 0.19
15 4 0.12
16 3 0.09
17 13 0.41
18 3 0.09
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.33
Consensus pattern (17 bp):
TAAATTGAATGAAATAA
Found at i:11537624 original size:49 final size:49
Alignment explanation
Indices: 11537555--11538495 Score: 1741
Period size: 49 Copynumber: 19.3 Consensus size: 49
11537545 GTGAACATGC
11537555 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11537604 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
11537653 ATATATGTGATAAGGCCCAATGGCTGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11537700 ATATATGTGATAAGGCCTAATGGCCGAGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCC--GATGTGATGAATGTGAAAGTGTAT
11537751 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11537800 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11537849 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11537898 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11537947 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11537996 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538045 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538094 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538143 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538192 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538241 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538290 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538339 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538388 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
11538435 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
11538484 A-A-ATGTGATAAG
1 ATATATGTGATAAG
11538496 TCCCAAAGGT
Statistics
Matches: 873, Mismatches: 13, Indels: 14
0.97 0.01 0.02
Matches are distributed among these distances:
47 72 0.08
48 1 0.00
49 774 0.89
51 26 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:11538670 original size:37 final size:37
Alignment explanation
Indices: 11538614--11538690 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
11538604 CCGAGCTCTA
* * *
11538614 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
11538651 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
11538688 AAG
1 AAG
11538691 GCTTCGTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:11541265 original size:56 final size:55
Alignment explanation
Indices: 11541190--11541297 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 55
11541180 GTATCCATTG
* *
11541190 GATGATAAATCATCACTTTTAATTTGAATAGTGCTTATGGATAATTAAATTTGTAA
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATT-AATTTGTAA
* * *
11541246 GATGATGAATTATCGCTTTTAATTTGAATAGTGCTCATGAATAATTAATTTG
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATTAATTTG
11541298 CAATCTATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
55 6 0.13
56 41 0.87
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (55 bp):
GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATTAATTTGTAA
Found at i:11543847 original size:34 final size:33
Alignment explanation
Indices: 11543777--11543843 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
11543767 TTATACTTAC
*
11543777 ATAACACTAAAATAGGTGCAACTTAACAAGTAA
1 ATAACACTAAAATAGGTGCAAATTAACAAGTAA
*
11543810 ATAACTCTAAAATA-GTAGCAAAATTAACAA-TAA
1 ATAACACTAAAATAGGT-GC-AAATTAACAAGTAA
11543843 A
1 A
11543844 ATAAGAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 2 0.07
33 19 0.63
34 9 0.30
ACGTcount: A:0.55, C:0.13, G:0.09, T:0.22
Consensus pattern (33 bp):
ATAACACTAAAATAGGTGCAAATTAACAAGTAA
Found at i:11548554 original size:45 final size:45
Alignment explanation
Indices: 11548496--11548663 Score: 151
Period size: 45 Copynumber: 3.8 Consensus size: 45
11548486 ACTAGAAACG
** *
11548496 AGTAAGAAAATGACTGAAAGACGTTATGGCATCATGATTCTATCA
1 AGTAAGACCATGACTGAAAGACGTTATGGCATCATGACTCTATCA
* * * * *
11548541 AGTAATACCATGACTAAAAGACATTATGGCATCACGACTCTATCG
1 AGTAAGACCATGACTGAAAGACGTTATGGCATCATGACTCTATCA
* * * * * *
11548586 AGTAAGACCATAACTGAAATA-GCTATGGCATCATGAATCAAACGA
1 AGTAAGACCATGACTGAAAGACGTTATGGCATCATGACTCTATC-A
** **
11548631 A-TAAGACCATGGTTGAAAGACACTATGGCATCA
1 AGTAAGACCATGACTGAAAGACGTTATGGCATCA
11548664 AGATGAGAAT
Statistics
Matches: 97, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
44 31 0.32
45 66 0.68
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (45 bp):
AGTAAGACCATGACTGAAAGACGTTATGGCATCATGACTCTATCA
Found at i:11549591 original size:20 final size:20
Alignment explanation
Indices: 11549566--11549619 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
11549556 TATTTAAGCT
11549566 AAAGTAAGTAAATGCAATGA
1 AAAGTAAGTAAATGCAATGA
*
11549586 AAAGTAAGTAAATGCAATGG
1 AAAGTAAGTAAATGCAATGA
11549606 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
11549620 GAAGGGTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.54, C:0.04, G:0.22, T:0.20
Consensus pattern (20 bp):
AAAGTAAGTAAATGCAATGA
Found at i:11557572 original size:21 final size:21
Alignment explanation
Indices: 11557524--11557564 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11557514 ATGGCTGAAG
*
11557524 ACATGGCC-GTGTGGCTACTTC
1 ACAT-GCCTGTGTGACTACTTC
11557545 ACATGCCTGTGTGACTACTT
1 ACATGCCTGTGTGACTACTT
11557565 GGCATGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.17, C:0.27, G:0.24, T:0.32
Consensus pattern (21 bp):
ACATGCCTGTGTGACTACTTC
Found at i:11567577 original size:102 final size:102
Alignment explanation
Indices: 11567401--11567744 Score: 471
Period size: 102 Copynumber: 3.4 Consensus size: 102
11567391 TATCGATGAA
* * *
11567401 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTACTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAACGATGGTCAAATGTGTAGTAC
*
11567466 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
*
11567503 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAACGATGGTCAAATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAACGATGGTCAAATGTGTAGTAC
*
11567568 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
* * * **
11567605 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAAC-TTGATCATGTGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGAT-AAACGATGGTCAAATGTGTAGTA
* ** * * * *
11567668 CTATGTGAAGGCTATGACGTGAACC-ATAAAAC-TTGAT
65 CTAAGTGAAGGCTACAATGTGTACCGA-AAAGCTTTGGT
*
11567705 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
11567745 ATGATAAAAG
Statistics
Matches: 218, Mismatches: 21, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
100 42 0.19
101 39 0.18
102 137 0.63
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAACGATGGTCAAATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
Found at i:11567671 original size:50 final size:50
Alignment explanation
Indices: 11567401--11567738 Score: 378
Period size: 51 Copynumber: 6.7 Consensus size: 50
11567391 TATCGATGAA
* *
11567401 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAA-TGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGA-AAACT-TTGGT
* * * * * * *
11567452 CACATGTGTACTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGA-AAACTTTGGT
* * **
11567503 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAACGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGA-AAACTTTGGT
** * * *
11567554 CAAATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAA-CTTTGGT
*
11567605 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-AAAACTTTGGT
* * *
11567655 CATGTGTGTAGTACTATGTGAAGGCTA-TGACGTGAACCATAAAAC-TTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACT-ACGTGAACC-GAAAACTTTGGT
11567705 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
11567739 TATCGAATGA
Statistics
Matches: 241, Mismatches: 40, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
49 1 0.00
50 83 0.34
51 152 0.63
52 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAACTTTGGT
Found at i:11573629 original size:16 final size:15
Alignment explanation
Indices: 11573605--11573634 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
11573595 TATTGAAAAA
11573605 AACATTTATATTAAT
1 AACATTTATATTAAT
11573620 AACATGTTATATTAA
1 AACAT-TTATATTAA
11573635 CTTACATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (15 bp):
AACATTTATATTAAT
Found at i:11574742 original size:37 final size:37
Alignment explanation
Indices: 11574692--11574766 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
11574682 ATGTTGAGAT
11574692 TGATGAATCTTTGTGATTTTAGATGTTAAATGATGAA
1 TGATGAATCTTTGTGATTTTAGATGTTAAATGATGAA
11574729 TGATGAATCTTTGTGATTTTAGATGTTAAATGATGAA
1 TGATGAATCTTTGTGATTTTAGATGTTAAATGATGAA
11574766 T
1 T
11574767 TCAAGTGTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.44
Consensus pattern (37 bp):
TGATGAATCTTTGTGATTTTAGATGTTAAATGATGAA
Found at i:11575285 original size:35 final size:35
Alignment explanation
Indices: 11575240--11575342 Score: 154
Period size: 35 Copynumber: 2.9 Consensus size: 35
11575230 TACTCTCTGT
* *
11575240 TTGGTGTGTTTCAGTTGGACTAGCTCTTAT-ACGCA
1 TTGGCGTGTTTCGGTTGGACTAGCTCTTATGA-GCA
11575275 TTGGCGTGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TTGGCGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* *
11575310 TTGGCGTGTTACGGTTGGACTAGCTCTTGTGAG
1 TTGGCGTGTTTCGGTTGGACTAGCTCTTATGAG
11575343 AATTTGATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
35 62 0.98
36 1 0.02
ACGTcount: A:0.15, C:0.17, G:0.31, T:0.38
Consensus pattern (35 bp):
TTGGCGTGTTTCGGTTGGACTAGCTCTTATGAGCA
Found at i:11577486 original size:21 final size:21
Alignment explanation
Indices: 11577453--11577493 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11577443 TAATTAACTT
*
11577453 ATTTCTTGATTTTTAAATTTA
1 ATTTATTGATTTTTAAATTTA
*
11577474 ATTTATTGGTTTTTAAATTT
1 ATTTATTGATTTTTAAATTT
11577494 TTATTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (21 bp):
ATTTATTGATTTTTAAATTTA
Found at i:11579194 original size:55 final size:56
Alignment explanation
Indices: 11579088--11579235 Score: 192
Period size: 55 Copynumber: 2.6 Consensus size: 56
11579078 GTCATCCCAT
* *
11579088 TTTCTATAATTAATTTTGATTTTTTAAAATTAATTTTATTTAAAACTGTAATTAACTTG
1 TTTCTTTAATTAATTTTGATTTTTTAAAA-TAA--TTATTTAAAACTGTAATTAACTTA
* * *
11579147 TTTCTTTAATTAATTTTGATTTTTTAAAATAA-TATTTTAAATTGTAATTAATTTA
1 TTTCTTTAATTAATTTTGATTTTTTAAAATAATTATTTAAAACTGTAATTAACTTA
*
11579202 TTTCTTTAATTAATTTTGA-ATTTTAAAATTAATT
1 TTTCTTTAATTAATTTTGATTTTTTAAAA-TAATT
11579236 TCATTTTAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
54 8 0.10
55 41 0.51
56 1 0.01
58 3 0.04
59 28 0.35
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (56 bp):
TTTCTTTAATTAATTTTGATTTTTTAAAATAATTATTTAAAACTGTAATTAACTTA
Found at i:11579199 original size:59 final size:55
Alignment explanation
Indices: 11579088--11579236 Score: 151
Period size: 59 Copynumber: 2.7 Consensus size: 55
11579078 GTCATCCCAT
* * * *
11579088 TTTCTATAATTAATTTTGATTTTTTAAAATTAATTTTATTTAAAACTGTAATTAACTTG
1 TTTCTTTAATTAATTTTGATTTTTTAAAATAAATTTTAATTAAAACTGTAA-T---TTA
**
11579147 TTTCTTTAATTAATTTTGATTTTTTAAAATAATATTTTAAATTGTAA-T-TAATTTA
1 TTTCTTTAATTAATTTTGATTTTTTAAAATAA-ATTTT-AATTAAAACTGTAATTTA
* *
11579202 TTTCTTTAATTAATTTTGA-ATTTTAAAATTAATTT
1 TTTCTTTAATTAATTTTGATTTTTTAAAATAAATTT
11579237 CATTTTAATT
Statistics
Matches: 80, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
53 4 0.05
54 10 0.12
55 21 0.26
58 1 0.01
59 33 0.41
60 6 0.08
61 5 0.06
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (55 bp):
TTTCTTTAATTAATTTTGATTTTTTAAAATAAATTTTAATTAAAACTGTAATTTA
Found at i:11580698 original size:31 final size:29
Alignment explanation
Indices: 11580663--11580729 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
11580653 AGTGATCACT
11580663 ACGTAACAAAATAATAACATAAGTGACTAAA
1 ACGTAAC-AAATAA-AACATAAGTGACTAAA
** *
11580694 ACGTAACATTTCAAACATAAGTGACTAAA
1 ACGTAACAAATAAAACATAAGTGACTAAA
*
11580723 ATGTAAC
1 ACGTAAC
11580730 CTGAAACAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 22 0.69
30 3 0.09
31 7 0.22
ACGTcount: A:0.52, C:0.15, G:0.10, T:0.22
Consensus pattern (29 bp):
ACGTAACAAATAAAACATAAGTGACTAAA
Found at i:11580798 original size:18 final size:18
Alignment explanation
Indices: 11580775--11580848 Score: 64
Period size: 18 Copynumber: 4.3 Consensus size: 18
11580765 CCCTTTAATT
11580775 TATTTAATTTTACAACAA
1 TATTTAATTTTACAACAA
*
11580793 TATTTAATTTTA-AA-AT
1 TATTTAATTTTACAACAA
** *
11580809 TAAAT-ATTTTACAACCA
1 TATTTAATTTTACAACAA
* * *
11580826 TAATTAATTATACAACCA
1 TATTTAATTTTACAACAA
11580844 TATTT
1 TATTT
11580849 TAAAATTAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
15 6 0.13
16 6 0.13
17 6 0.13
18 27 0.60
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (18 bp):
TATTTAATTTTACAACAA
Found at i:11584925 original size:33 final size:33
Alignment explanation
Indices: 11584889--11584969 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
11584879 AAAAGTTAAA
**
11584889 AAAAATATTTTTCAA-ATGACTACAAATTTTGT
1 AAAAATATTTTAAAAGATGACTACAAATTTTGT
11584921 AAAAATATTTTAAAAGATGACTACAAATTTT-T
1 AAAAATATTTTAAAAGATGACTACAAATTTTGT
*
11584953 GAATCAATATTTTAAAA
1 -AA-AAATATTTTAAAA
11584970 AATATAGATT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
32 14 0.33
33 17 0.40
34 12 0.28
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.38
Consensus pattern (33 bp):
AAAAATATTTTAAAAGATGACTACAAATTTTGT
Found at i:11584953 original size:34 final size:31
Alignment explanation
Indices: 11584889--11584970 Score: 101
Period size: 34 Copynumber: 2.5 Consensus size: 31
11584879 AAAAGTTAAA
**
11584889 AAAAATATTTTTCAAATGACTACAAATTTTG
1 AAAAATATTTTAAAAATGACTACAAATTTTG
11584920 TAAAAATATTTTAAAAGATGACTACAAATTTTTG
1 -AAAAATATTTTAAAA-ATGACTACAAA-TTTTG
*
11584954 AATCAATATTTTAAAAA
1 AA-AAATATTTTAAAAA
11584971 ATATAGATTG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
32 13 0.30
33 14 0.32
34 17 0.39
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.38
Consensus pattern (31 bp):
AAAAATATTTTAAAAATGACTACAAATTTTG
Found at i:11586233 original size:27 final size:30
Alignment explanation
Indices: 11586183--11586242 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
11586173 TCATAAAAGT
* *
11586183 TATATATATATTATATAAAGAAAT-ATGTA
1 TATAAATATACTATATAAAGAAATCATGTA
11586212 TATAAATATACTATAT-AA-AAATGCATGTA
1 TATAAATATACTATATAAAGAAAT-CATGTA
11586241 TA
1 TA
11586243 AATATAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 4 0.15
28 2 0.07
29 21 0.78
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (30 bp):
TATAAATATACTATATAAAGAAATCATGTA
Found at i:11588338 original size:13 final size:13
Alignment explanation
Indices: 11588320--11588344 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11588310 ATTATTAATA
11588320 TTATTTTGTGTGT
1 TTATTTTGTGTGT
11588333 TTATTTTGTGTG
1 TTATTTTGTGTG
11588345 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:11590048 original size:41 final size:41
Alignment explanation
Indices: 11590003--11590160 Score: 237
Period size: 41 Copynumber: 3.9 Consensus size: 41
11589993 TATTCAGACA
* *
11590003 ATACGTCTAGTAGGCTAAGTGCCGGTGAATTGAATCGGACT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCGGACT
* *
11590044 ATACGTCTAGCAGGCTAAATGCCGGTGAATTGAATCGGACT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCGGACT
11590085 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGG-CT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATC-GGACT
* * *
11590126 ACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAAT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAAT
11590161 TAAACTATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 107 0.98
42 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (41 bp):
ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCGGACT
Found at i:11590173 original size:41 final size:41
Alignment explanation
Indices: 11590009--11590195 Score: 214
Period size: 41 Copynumber: 4.6 Consensus size: 41
11589999 GACAATACGT
* * * * *
11590009 CTAGTAGGCTAAGTGCCGGTGAATTGAATCGGACTATACGT
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* * * * *
11590050 CTAGCAGGCTAAATGCCGGTGAATTGAATCGGACTATACGT
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* *
11590091 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTACAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* *
11590132 CTAGCAGGCTAAGTGCCGGTGAACTGAATTAAACTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* *
11590173 CTATCAGG-TGAAGTGCCAGTGAA
1 CTAGCAGGCT-AAGTGCCGGTGAA
11590196 TCTGTTTAAA
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
40 1 0.01
41 129 0.99
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
Found at i:11592626 original size:23 final size:23
Alignment explanation
Indices: 11592590--11592633 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
11592580 GAAAAATATT
11592590 AAATATATA-TTTTTTATTTTTA
1 AAATATATATTTTTTTATTTTTA
11592612 AAATATAATATTTTTTTATTTT
1 AAATAT-ATATTTTTTTATTTT
11592634 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
AAATATATATTTTTTTATTTTTA
Found at i:11592867 original size:102 final size:102
Alignment explanation
Indices: 11592686--11592894 Score: 400
Period size: 102 Copynumber: 2.0 Consensus size: 102
11592676 ATAATAATAA
*
11592686 AACATCAAGTTTGTTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAAT
1 AACAACAAGTTTGTTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAAT
11592751 TTGATAAATTTACTAATCAAATGTTAGATTTTATTAC
66 TTGATAAATTTACTAATCAAATGTTAGATTTTATTAC
11592788 AACAACAAGTTTGTTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAAT
1 AACAACAAGTTTGTTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAAT
*
11592853 TTGATAAATTTACTAATCAAATGTTAGTTTTTATTAC
66 TTGATAAATTTACTAATCAAATGTTAGATTTTATTAC
11592890 AACAA
1 AACAA
11592895 TTAATACAAT
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 105 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (102 bp):
AACAACAAGTTTGTTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAAT
TTGATAAATTTACTAATCAAATGTTAGATTTTATTAC
Found at i:11592937 original size:102 final size:102
Alignment explanation
Indices: 11592703--11592942 Score: 283
Period size: 102 Copynumber: 2.4 Consensus size: 102
11592693 AGTTTGTTTT
* **
11592703 ACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAATTTGATAAATTTACTAAT
1 ACTAATAAAATGTTAGATAATGTTACAACAATTAATACAATTAATAATTTGATAAATTTACTAAT
**** *
11592768 CAAATGTTAGATTTTATTACAACAACAAGTTTGTTTT
66 CAAATGTTAGATTTTATTACAACAACAAGTACAATTA
* **
11592805 ACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAATTTGATAAATTTACTAAT
1 ACTAATAAAATGTTAGATAATGTTACAACAATTAATACAATTAATAATTTGATAAATTTACTAAT
* *
11592870 CAAATGTTAGTTTTTATTACAACAATTAA-TACAATTA
66 CAAATGTTAGATTTTATTACAACAA-CAAGTACAATTA
11592907 AC-AATTAATAAT-TT-GATAAAT-TTACTAACAATTAAT
1 ACTAA-TAA-AATGTTAGAT-AATGTTAC-AACAATTAAT
11592943 TTTAATAACA
Statistics
Matches: 123, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
101 9 0.07
102 109 0.89
103 5 0.04
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (102 bp):
ACTAATAAAATGTTAGATAATGTTACAACAATTAATACAATTAATAATTTGATAAATTTACTAAT
CAAATGTTAGATTTTATTACAACAACAAGTACAATTA
Found at i:11592946 original size:16 final size:16
Alignment explanation
Indices: 11592927--11592964 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
11592917 ATTTGATAAA
*
11592927 TTTACTAACAATTAAT
1 TTTAATAACAATTAAT
*
11592943 TTTAATAACAATTAGT
1 TTTAATAACAATTAAT
11592959 TTTAAT
1 TTTAAT
11592965 TTTATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (16 bp):
TTTAATAACAATTAAT
Found at i:11592965 original size:22 final size:23
Alignment explanation
Indices: 11592938--11592999 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
11592928 TTACTAACAA
* * *
11592938 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
11592960 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
*
11592983 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
11593000 CGGGCCAGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:11595984 original size:29 final size:28
Alignment explanation
Indices: 11595918--11595975 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
11595908 TATGTAAATT
*
11595918 ATCGGATGTAATTATTTGAAATGTTACAT
1 ATCGGATGTAATTATTTGAAA-GTTACAC
11595947 ATCGGATGTAATTATTTGAAA-TTACAC
1 ATCGGATGTAATTATTTGAAAGTTACAC
11595974 AT
1 AT
11595976 GTGACATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 7 0.25
29 21 0.75
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (28 bp):
ATCGGATGTAATTATTTGAAAGTTACAC
Found at i:11603665 original size:32 final size:31
Alignment explanation
Indices: 11603602--11603678 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 31
11603592 TTTGAAGAGT
** **
11603602 CTTTGGTGTGAACACTTGGATTTGGACGGTC
1 CTTTGGTGTGAACACCAGGAAGTGGACGGTC
*
11603633 CTTTGGGTGTGAACACCAGGAAGTGGATGGTC
1 CTTT-GGTGTGAACACCAGGAAGTGGACGGTC
*
11603665 CATTGGTGTGAACA
1 CTTTGGTGTGAACA
11603679 AAAATAGTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 14 0.36
32 25 0.64
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.30
Consensus pattern (31 bp):
CTTTGGTGTGAACACCAGGAAGTGGACGGTC
Found at i:11604376 original size:42 final size:42
Alignment explanation
Indices: 11604319--11604870 Score: 763
Period size: 42 Copynumber: 13.3 Consensus size: 42
11604309 CTTCATATAG
* *
11604319 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGACTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
11604361 AATACAATGAAAAGTAAACGAACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
11604403 AATGCAATGAAAAGTCAATGGACCTCCACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
11604445 AATGCAATGAAAAGTGAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * ** *
11604487 AATGTAATGAAAAGCAAATGGACCTCCACACCTGGGTTTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
11604529 AATACAATAAAAAGTAAATGAACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
11604571 AATGCAATGAAAAGTGAATGGAACTCCACACCTGAGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
11604613 AATGCAATAAAAAGTAAATGGACATCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
11604655 AATGCAATGAAAAGTAAATGGAACTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
11604697 AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
11604739 AATGCAAT-AAAAGTAATTGGACCTCCACACCT----CTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * * *
11604776 AATGCAATAAAAATTAAATGGACCTCTACGCTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
11604818 AATGCAATGAAAAGTAAATAGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
11604860 AATGCAGTGAA
1 AATGCAATGAA
11604871 TGTTTTCCTT
Statistics
Matches: 445, Mismatches: 60, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
37 12 0.03
38 19 0.04
41 23 0.05
42 391 0.88
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:11606566 original size:43 final size:42
Alignment explanation
Indices: 11606512--11606648 Score: 116
Period size: 42 Copynumber: 3.2 Consensus size: 42
11606502 CAGATGTGGC
* * * * *
11606512 CTTACATGTAATGAAATAACGATGTCACTGTCCCAGACAGGGT
1 CTTACACGTAATCAAAT-ACGACGCCAATGTCCCAGACAGGGT
* * *
11606555 CTTACACGTAATCATATATGACGCCAATGTCCCAGACATGGT
1 CTTACACGTAATCAAATACGACGCCAATGTCCCAGACAGGGT
* * *
11606597 CTTACACGTAAATCTTAAA-CCGATGCCAACGTCCCAGAC-GTGGT
1 CTTACACGT-AATC--AAATACGACGCCAATGTCCCAGACAG-GGT
11606641 CTTACACG
1 CTTACACG
11606649 ATATCACATT
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
42 29 0.38
43 18 0.24
44 27 0.36
45 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
CTTACACGTAATCAAATACGACGCCAATGTCCCAGACAGGGT
Found at i:11606635 original size:44 final size:42
Alignment explanation
Indices: 11606541--11606648 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 42
11606531 CGATGTCACT
* * * *
11606541 GTCCCAGACAGGGTCTTACACGTAATCATATATGACGCCAAT
1 GTCCCAGACATGGTCTTACACGTAATCATAAACGACGCCAAC
* *
11606583 GTCCCAGACATGGTCTTACACGTAAATCTTAAACCGATGCCAAC
1 GTCCCAGACATGGTCTTACACGT-AATCATAAA-CGACGCCAAC
*
11606627 GTCCCAGACGTGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
11606649 ATATCACATT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 22 0.39
43 7 0.12
44 28 0.49
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCATAAACGACGCCAAC
Found at i:11608176 original size:13 final size:12
Alignment explanation
Indices: 11608152--11608204 Score: 79
Period size: 12 Copynumber: 4.3 Consensus size: 12
11608142 TCTTGCTTTC
11608152 TCTTTATTTTTT
1 TCTTTATTTTTT
*
11608164 GCTTTATTTTTT
1 TCTTTATTTTTT
11608176 TCTTTATTATTTT
1 TCTTTATT-TTTT
*
11608189 TCTTTCTTTTTT
1 TCTTTATTTTTT
11608201 TCTT
1 TCTT
11608205 AATATAAGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
12 26 0.70
13 11 0.30
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.79
Consensus pattern (12 bp):
TCTTTATTTTTT
Found at i:11608182 original size:24 final size:25
Alignment explanation
Indices: 11608152--11608204 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
11608142 TCTTGCTTTC
11608152 TCTTTATT-TTTTGCTTTATTTTTT
1 TCTTTATTATTTTGCTTTATTTTTT
* *
11608176 TCTTTATTATTTTTCTTTCTTTTTT
1 TCTTTATTATTTTGCTTTATTTTTT
11608201 TCTT
1 TCTT
11608205 AATATAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.79
Consensus pattern (25 bp):
TCTTTATTATTTTGCTTTATTTTTT
Found at i:11621882 original size:23 final size:23
Alignment explanation
Indices: 11621852--11621898 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
11621842 AGAATGCTTG
11621852 TGGTTGTAGTAGTTTTTTCTTTT
1 TGGTTGTAGTAGTTTTTTCTTTT
11621875 TGGTTGTAGTAGTTTTTTCTTTT
1 TGGTTGTAGTAGTTTTTTCTTTT
11621898 T
1 T
11621899 TACCTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.09, C:0.04, G:0.21, T:0.66
Consensus pattern (23 bp):
TGGTTGTAGTAGTTTTTTCTTTT
Found at i:11625258 original size:194 final size:196
Alignment explanation
Indices: 11624925--11625311 Score: 733
Period size: 194 Copynumber: 2.0 Consensus size: 196
11624915 AAAAAAAATG
11624925 TGTGTGTGTAGTGTTTGTTTCCCCCCCCCCCATTGCCGTGAGCTCAAGAGAAGAAAGGAGAAAAG
1 TGTGTGTGTAGTGTTTG-TT-CCCCCCCCCCATTGCCGTGAGCTCAAGAGAAGAAAGGAGAAAAG
11624990 TTTGTGTTCATCCTTTCTCACCTCCATTTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAAATT
64 TTTGTGTTCATCCTTTCTCACCTCCATTTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAAATT
11625055 TCTCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGAAGAAAGGTGAAGAAA
129 TCTCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGAAGAAAGGTGAAGAAA
11625120 AAA
194 AAA
*
11625123 TGTGTGTGTAGTGTTTG-T-CCCCCCCCCTTTGCCGTGAGCTCAAGAGAAGAAAGGAGAAAAGTT
1 TGTGTGTGTAGTGTTTGTTCCCCCCCCCCATTGCCGTGAGCTCAAGAGAAGAAAGGAGAAAAGTT
11625186 TGTGTTCATCCTTTCTCACCTCCATTTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAAATTTC
66 TGTGTTCATCCTTTCTCACCTCCATTTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAAATTTC
11625251 TCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGAAGAAAGGTGAAGA
131 TCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGAAGAAAGGTGAAGA
11625312 GATTCGGCCA
Statistics
Matches: 188, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
194 170 0.90
196 1 0.01
198 17 0.09
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (196 bp):
TGTGTGTGTAGTGTTTGTTCCCCCCCCCCATTGCCGTGAGCTCAAGAGAAGAAAGGAGAAAAGTT
TGTGTTCATCCTTTCTCACCTCCATTTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAAATTTC
TCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGAAGAAAGGTGAAGAAAAA
A
Found at i:11626321 original size:40 final size:40
Alignment explanation
Indices: 11626238--11626500 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
11626228 GTGAATGCTG
* * * * * *
11626238 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
11626278 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
11626318 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
11626358 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
11626398 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
11626438 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
11626477 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
11626501 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.18
40 154 0.78
41 8 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:11632322 original size:52 final size:52
Alignment explanation
Indices: 11632265--11632364 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 52
11632255 TAAGGTTTCA
11632265 CCTTGGAAAAAGATACTCAGGTTCGGCCGTAAGGGCAAGTTGAGCCCATTCG
1 CCTTGGAAAAAGATACTCAGGTTCGGCCGTAAGGGCAAGTTGAGCCCATTCG
* *
11632317 CCTTGGAAAAAGGTACTCAGGTTTGGCCGTAAGGGCAAGTTGAGCCCA
1 CCTTGGAAAAAGATACTCAGGTTCGGCCGTAAGGGCAAGTTGAGCCCA
11632365 AGATTCATTG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (52 bp):
CCTTGGAAAAAGATACTCAGGTTCGGCCGTAAGGGCAAGTTGAGCCCATTCG
Found at i:11632782 original size:55 final size:56
Alignment explanation
Indices: 11632698--11632808 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 56
11632688 CCCAAACCTA
11632698 TTTACCGGTAAGATTTTCGGGGACAAAAATTTCTTAAGTGGGGGAGAG-TTGTGAC
1 TTTACCGGTAAGATTTTCGGGGACAAAAATTTCTTAAGTGGGGGAGAGATTGTGAC
* *
11632753 TTTACCGGTAAGATTTTCGGGGACGAAAATTTTTTAAGTGGGGGAGAGATTGTGAC
1 TTTACCGGTAAGATTTTCGGGGACAAAAATTTCTTAAGTGGGGGAGAGATTGTGAC
11632809 AGCCCAAAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
55 46 0.87
56 7 0.13
ACGTcount: A:0.27, C:0.10, G:0.32, T:0.32
Consensus pattern (56 bp):
TTTACCGGTAAGATTTTCGGGGACAAAAATTTCTTAAGTGGGGGAGAGATTGTGAC
Found at i:11634442 original size:39 final size:39
Alignment explanation
Indices: 11634278--11634460 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
11634268 TTGAATGCTG
* * * * * * *
11634278 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
11634318 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
11634358 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
11634398 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
11634437 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
11634461 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:11634480 original size:79 final size:80
Alignment explanation
Indices: 11634314--11634494 Score: 188
Period size: 79 Copynumber: 2.3 Consensus size: 80
11634304 GCTAAGTGAA
* * * *
11634314 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
11634378 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
11634394 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
11634458 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
11634473 TATATCC-GGTTAAATCCCGAAG
1 TATATCCGGGTTAAGTCCCGAAG
11634495 ATACGTGATT
Statistics
Matches: 82, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 13 0.16
79 50 0.61
80 19 0.23
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:11635652 original size:61 final size:61
Alignment explanation
Indices: 11635557--11635679 Score: 203
Period size: 61 Copynumber: 2.0 Consensus size: 61
11635547 GAGATATCCC
*
11635557 AGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGG-GAACTTTGACTAATA
1 AGTCGTAAGGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGAG-ACTTTGACTAATA
* *
11635618 AGTCGTAAGGGGTAAAGGTCAGTGTAGTCGACCCCTGTAACTTGGGAGACTTTGACTAATA
1 AGTCGTAAGGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGAGACTTTGACTAATA
11635679 A
1 A
11635680 ACTGTACTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 57 0.98
62 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (61 bp):
AGTCGTAAGGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGAGACTTTGACTAATA
Found at i:11642423 original size:39 final size:40
Alignment explanation
Indices: 11642219--11642441 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
11642209 TTGAATGCTG
* * * * * *
11642219 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * *
11642259 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
11642299 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
11642339 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
11642379 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
11642418 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
11642442 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 119 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:11642461 original size:79 final size:80
Alignment explanation
Indices: 11642295--11642476 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
11642285 TGCGAGATAT
* * *
11642295 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
11642360 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * *
11642375 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
11642439 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
* *
11642454 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
11642477 TACGTGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:11648780 original size:28 final size:28
Alignment explanation
Indices: 11648739--11648832 Score: 127
Period size: 28 Copynumber: 3.4 Consensus size: 28
11648729 TATCCAGTAC
* *
11648739 CAGT-ACAGTATGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
11648766 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* * *
11648794 TAGTAACAATGTGGGCCTTAGCCCAGTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
11648822 CAGTAATCAGT
1 CAGTAA-CAGT
11648833 ACAATGCAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.07
28 51 0.88
29 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:11649012 original size:26 final size:26
Alignment explanation
Indices: 11648943--11649014 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
11648933 AATACCGCAG
* * * *
11648943 CAAAGCTGCTAGTAATAATAATGCAA
1 CAAAGCTACCAGTAACAGTAATGCAA
*
11648969 CAAAGCTACGAGTAACAGTAATGCAA
1 CAAAGCTACCAGTAACAGTAATGCAA
11648995 CAAAGCTACCAGTAACAGTA
1 CAAAGCTACCAGTAACAGTA
11649015 TATGTGGCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.18
Consensus pattern (26 bp):
CAAAGCTACCAGTAACAGTAATGCAA
Found at i:11649103 original size:32 final size:32
Alignment explanation
Indices: 11649062--11649127 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
11649052 TATCAGAATC
*
11649062 TCATGTCATAAATCACACGTGTATGTAGTATG
1 TCATGTCATAAACCACACGTGTATGTAGTATG
* *
11649094 TCATGTCATAAACCATACGTGTATGTAGTGTG
1 TCATGTCATAAACCACACGTGTATGTAGTATG
11649126 TC
1 TC
11649128 GTACTCAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (32 bp):
TCATGTCATAAACCACACGTGTATGTAGTATG
Found at i:11649246 original size:26 final size:26
Alignment explanation
Indices: 11649192--11649596 Score: 147
Period size: 27 Copynumber: 15.1 Consensus size: 26
11649182 GGCCATAACA
* * **
11649192 GTCATTTCATCTCCTAGGGGTATAACG
1 GTCATTTTATC-CTTAGGGGTATTTCG
*
11649219 GTTA-TTTATCCTATAGGGGTATTTCG
1 GTCATTTTATCCT-TAGGGGTATTTCG
* *
11649245 GTCATTTTATCCTTCGGGGGTATTTCA
1 GTCATTTTATCCTT-AGGGGTATTTCG
** * * *
11649272 AACATTTTACCCTTTGGGGGTATTTTG
1 GTCATTTTATCC-TTAGGGGTATTTCG
* * *
11649299 GTCATTTTA-CCATTTAGGGATTTTTTG
1 GTCATTTTATCC--TTAGGGGTATTTCG
* * **
11649326 GTAATTTTACCCTATAGGGGTATTTTA
1 GTCATTTTATCCT-TAGGGGTATTTCG
* * *
11649353 GTCATTTTACCCTTCGGGGGTATTTCA
1 GTCATTTTATCCTT-AGGGGTATTTCG
* * *
11649380 GACATTTTACCCTTCAGGGGTATTTTG
1 GTCATTTTATCCTT-AGGGGTATTTCG
* * *
11649407 ATCATTTTA-CCATTCAGGGATATTTTG
1 GTCATTTTATCC-TT-AGGGGTATTTCG
* * *
11649434 GTAATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTATCCTTAG-GGGTATTTCG
* * * **
11649461 ATAATTTTA-CCGTTCGGGGTATTTTA
1 GTCATTTTATCC-TTAGGGGTATTTCG
* * * *
11649487 GTAATTTTACCCTTTAAGGGTATTTTG
1 GTCATTTTATCC-TTAGGGGTATTTCG
* * * *
11649514 GTAATTTTA-CCTTTCGAGAGT-TTTCA
1 GTCATTTTATCC-TTAG-GGGTATTTCG
* * *
11649540 GTAATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTATCCTTAG-GGGTATTTCG
* * * *
11649567 GTAATTTTACCCTTCGTTGGTATTTCG
1 GTCATTTTATCCTTAG-GGGTATTTCG
11649594 GTC
1 GTC
11649597 CCATTAAAGC
Statistics
Matches: 307, Mismatches: 55, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.00
26 70 0.23
27 230 0.75
28 6 0.02
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (26 bp):
GTCATTTTATCCTTAGGGGTATTTCG
Found at i:11649264 original size:27 final size:27
Alignment explanation
Indices: 11649234--11649595 Score: 284
Period size: 27 Copynumber: 13.5 Consensus size: 27
11649224 TTATCCTATA
* *
11649234 GGGGTATTTCGGTCATTTTATCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
** *
11649261 GGGGTATTTC-AAACATTTTACCCTTTG
1 GGGGTATTTCGGTA-ATTTTACCCTTCG
* * * **
11649288 GGGGTATTTTGGTCATTTTACCATTTA
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * * *
11649315 GGGATTTTTTGGTAATTTTACCCTAT-A
1 GGGGTATTTCGGTAATTTTACCCT-TCG
** *
11649342 GGGGTATTTTAGTCATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
* *
11649369 GGGGTATTTCAG-ACATTTTACCCTTCA
1 GGGGTATTTCGGTA-ATTTTACCCTTCG
* * * * *
11649396 GGGGTATTTTGATCATTTTACCATTCA
1 GGGGTATTTCGGTAATTTTACCCTTCG
* *
11649423 GGGATATTTTGGTAATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * *
11649450 AGGGTATTTCGATAATTTTACCGTTC-
1 GGGGTATTTCGGTAATTTTACCCTTCG
** **
11649476 GGGGTATTTTAGTAATTTTACCCTTTA
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * *
11649503 AGGGTATTTTGGTAATTTTACCTTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * *
11649530 AGAGT-TTTCAGTAATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
*
11649556 AGGGTATTTCGGTAATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
**
11649583 TTGGTATTTCGGT
1 GGGGTATTTCGGT
11649596 CCCATTAAAG
Statistics
Matches: 270, Mismatches: 57, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
26 43 0.16
27 226 0.84
28 1 0.00
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACCCTTCG
Found at i:11649417 original size:108 final size:108
Alignment explanation
Indices: 11649235--11649592 Score: 445
Period size: 108 Copynumber: 3.3 Consensus size: 108
11649225 TATCCTATAG
* * * *
11649235 GGGTATTTCGGTCATTTTATCCTTCGGGGGTATTTCAAACATTTTACCCTTTGGGGGTATTTTGG
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTTAGGGGTATTTTGG
11649300 TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTATAG-
66 TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCT-TAGA
** * * *
11649343 GGGTATTTTAGTCATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTCAGGGGTATTTTGA
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTTAGGGGTATTTTGG
* * *
11649408 TCATTTTACCATTCAGGGATATTTTGGTAATTTTACCCTTCGA
66 TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTTAGA
* * * *
11649451 GGGTATTTCGATAATTTTACCGTTC-GGGGTATTTTAGTA-ATTTTACCCTTTAAGGGTATTTTG
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAG-ACATTTTACCCTTTAGGGGTATTTTG
* * * * ** *
11649514 GTAATTTTACC-TTTCGAGAGTTTTCAGTAATTTTACCCTTCGA
65 GTCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTTAGA
**
11649557 GGGTATTTCGGTAATTTTACCCTTCGTTGGTATTTC
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTC
11649593 GGTCCCATTA
Statistics
Matches: 215, Mismatches: 32, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
106 48 0.22
107 51 0.24
108 116 0.54
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.45
Consensus pattern (108 bp):
GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTTAGGGGTATTTTGG
TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTTAGA
Found at i:11650284 original size:35 final size:35
Alignment explanation
Indices: 11650245--11650313 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
11650235 AAAAAGATTA
*
11650245 TTCGGCCA-AAGAAGAAAA-AAAGAAGAGAAGAAAGG
1 TTCGGCCAGAAGAA-AAAAGAAA-AAGAAAAGAAAGG
11650280 TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAG
1 TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAG
11650314 TAAAATGAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 23 0.74
36 8 0.26
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.06
Consensus pattern (35 bp):
TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAGG
Found at i:11651163 original size:365 final size:367
Alignment explanation
Indices: 11650451--11651171 Score: 1104
Period size: 365 Copynumber: 2.0 Consensus size: 367
11650441 TCGAAACTCC
* *
11650451 CCGAAATCAAAGCAAGCAGAAAGAAAACTCCCAAAAAAAAACCAAAATCGAAAACCTTTAGTGCT
1 CCGAAATCAAAGCAAACAGAAAGAAAAC-CCC-AAAAAAAACCAAAACCGAAAACCTTTAGTGCT
* * * *
11650516 AAGTGACTAAATTCAGCACAAACACCCTCCCCCAATAGAATTCTCACTGTTGGAATACCCCAAAT
64 AAGTGACTAAATTCAGCACAAACACCCTCACCCAACAGAATTCTCACTGTTCGAATACCCCAAAC
* * *
11650581 GACACACACTCCCCCCTCTCATCAAACTGCTTAATTTCCTTCACAAATCTCTCCCCTTATCCCTC
129 GACACACACTCCCCCCTCTCATCAAACTCCTTAATTTCCTCCACAAATCTCTCCCCTTATCACTC
* * *
11650646 CTTGATTTATTCCATCAAATCCTCCTCAACTCCCTCTAGGACCAGTTCAAACTCCATTAAGCAGT
194 ATTGATTTACTCCATAAAATCCTCCTCAACTCCCTCTAGGACCAGTTCAAACTCCATTAAGCAGT
*
11650711 ATTCCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGTAGCAC
259 ATTCCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGCAGCAC
* *
11650776 ATGACTCGAACCTTAAACCTTAAGAGAACTTCACACGCGACTTG
324 AAGACTCGAACCTCAAACCTTAAGAGAACTTCACACGCGACTTG
* *
11650820 CCGAAATCAAAGCAAACTGAGAGAAAA-CCC-AAAAAAACCAAAACCGAAAACCTTTAGTGCTAA
1 CCGAAATCAAAGCAAACAGAAAGAAAACCCCAAAAAAAACCAAAACCGAAAACCTTTAGTGCTAA
** *
11650883 GTGACTAAATTCTTCACAAACACCCTCACCCAACCGAATTCTCACTGTTCGAATACCCCAAACGA
66 GTGACTAAATTCAGCACAAACACCCTCACCCAACAGAATTCTCACTGTTCGAATACCCCAAACGA
** * *
11650948 CACGTACTCCCCCCTCTCATCAAATTCCTTAATTTCCTCCACAAATCTCTCCCTTTATCACTCAT
131 CACACACTCCCCCCTCTCATCAAACTCCTTAATTTCCTCCACAAATCTCTCCCCTTATCACTCAT
* * * * *
11651013 TGATTTACTCCATAAAATCTTTCTCAACTCCTTCTATGACCAGTTCAAACTCTATTAAGCAGTAT
196 TGATTTACTCCATAAAATCCTCCTCAACTCCCTCTAGGACCAGTTCAAACTCCATTAAGCAGTAT
* * * *
11651078 TCCAGTCCAACTCTACCACCTCACTGTATAGGTGGTAAAAATAAGCACTCCTCAGTGCAGCATAA
261 TCCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGCAGCACAA
*
11651143 GACTCGAACCTCAGACCTTAAGAGAACTT
326 GACTCGAACCTCAAACCTTAAGAGAACTT
11651172 TACGCACCAC
Statistics
Matches: 318, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
365 291 0.92
367 3 0.01
369 24 0.08
ACGTcount: A:0.34, C:0.31, G:0.10, T:0.24
Consensus pattern (367 bp):
CCGAAATCAAAGCAAACAGAAAGAAAACCCCAAAAAAAACCAAAACCGAAAACCTTTAGTGCTAA
GTGACTAAATTCAGCACAAACACCCTCACCCAACAGAATTCTCACTGTTCGAATACCCCAAACGA
CACACACTCCCCCCTCTCATCAAACTCCTTAATTTCCTCCACAAATCTCTCCCCTTATCACTCAT
TGATTTACTCCATAAAATCCTCCTCAACTCCCTCTAGGACCAGTTCAAACTCCATTAAGCAGTAT
TCCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGCAGCACAA
GACTCGAACCTCAAACCTTAAGAGAACTTCACACGCGACTTG
Found at i:11653403 original size:21 final size:23
Alignment explanation
Indices: 11653360--11653405 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
11653350 GCTGTCAAAA
**
11653360 TTAAATAGATGATATAATGCTCC
1 TTAAATAGATGATATAAACCTCC
11653383 TTAAAT-GATG-TATAAACCTCC
1 TTAAATAGATGATATAAACCTCC
11653404 TT
1 TT
11653406 TGTAACAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
22 4 0.19
23 6 0.29
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (23 bp):
TTAAATAGATGATATAAACCTCC
Found at i:11653564 original size:23 final size:23
Alignment explanation
Indices: 11653510--11653553 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
11653500 GAGACACCTA
11653510 CAATAAACACATTAAAATAAAAT
1 CAATAAACACATTAAAATAAAAT
11653533 CAATAAACACATTAAAATAAA
1 CAATAAACACATTAAAATAAA
11653554 TTTATTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (23 bp):
CAATAAACACATTAAAATAAAAT
Found at i:11653983 original size:50 final size:52
Alignment explanation
Indices: 11653857--11653988 Score: 144
Period size: 50 Copynumber: 2.6 Consensus size: 52
11653847 AAACTAAATG
* * *
11653857 AGTTACTTAATGCA-AAGGCTTAATTTAATGATGCAGACTTAAACTAACATGGG
1 AGTTACATAATGCATAA--CTTTATTTAATGATGCAGACTTAAACTAACATGGA
** * * *
11653910 AGTTACATAATGCATGTCATTATTT-ATGATGCATACTT-AACTAGCATGGA
1 AGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
*
11653960 AGTTACATAATGCATAACTTTATTAAATG
1 AGTTACATAATGCATAACTTTATTTAATG
11653989 CAAAACACAC
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
50 31 0.48
51 15 0.23
52 6 0.09
53 13 0.20
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (52 bp):
AGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
Found at i:11659455 original size:40 final size:40
Alignment explanation
Indices: 11659389--11659508 Score: 107
Period size: 40 Copynumber: 3.0 Consensus size: 40
11659379 ACACTCCAAT
* * * *
11659389 TTGTGGACAAACCACTAATAACGCAGACAAGCTTCCAGT-
1 TTGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
* * * *
11659428 TATGTGGACAAGCCACCAGTAATGCAGATATGCTGCTAGTA
1 T-TGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
* * * * *
11659469 TTGTGCACAAGCCACCAATAATACAAATAAGCTGTCAGTA
1 TTGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
11659509 GTGTAAACAA
Statistics
Matches: 64, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.02
40 62 0.97
41 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (40 bp):
TTGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
Found at i:11659519 original size:40 final size:40
Alignment explanation
Indices: 11659435--11659519 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
11659425 AGTTATGTGG
* * * * * **
11659435 ACAAGCCACCAGTAATGCAGATATGCTGCTAGTATTGTGC
1 ACAAGCCACCAATAATACAAATAAGCTGCTAGTAGTGTAA
11659475 ACAAGCCACCAATAATACAAATAAGCTG-TCAGTAGTGTAA
1 ACAAGCCACCAATAATACAAATAAGCTGCT-AGTAGTGTAA
11659515 ACAAG
1 ACAAG
11659520 TGCCAGTAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (40 bp):
ACAAGCCACCAATAATACAAATAAGCTGCTAGTAGTGTAA
Found at i:11665049 original size:103 final size:103
Alignment explanation
Indices: 11664915--11665102 Score: 288
Period size: 103 Copynumber: 1.8 Consensus size: 103
11664905 GACCAAATTA
* * *
11664915 GGCATATGGTGATCTTGCTATACCTGAATCAACATG-AAAGGATAGGCGACATCTTGGGGCATCG
1 GGCATATGGTAATCTTGCTATACCTGAATCAACAGGAAAAAG-TAGGCGACATCTTGGGGCATCG
*
11664979 ACAGAGCACTGTAGATCTCCTGTATCTTGATCAGATTGG
65 ACAAAGCACTGTAGATCTCCTGTATCTTGATCAGATTGG
* * *
11665018 GGCATGTGGTAATCTTGTTATACCTGAATCAACAGGAAAAAGTAGGTGACATCTTGGGGCATCGA
1 GGCATATGGTAATCTTGCTATACCTGAATCAACAGGAAAAAGTAGGCGACATCTTGGGGCATCGA
*
11665083 CAAAGCACTGTAGTTCTCCT
66 CAAAGCACTGTAGATCTCCT
11665103 AAACACATGT
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
103 72 0.95
104 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (103 bp):
GGCATATGGTAATCTTGCTATACCTGAATCAACAGGAAAAAGTAGGCGACATCTTGGGGCATCGA
CAAAGCACTGTAGATCTCCTGTATCTTGATCAGATTGG
Found at i:11666358 original size:44 final size:44
Alignment explanation
Indices: 11666261--11666601 Score: 136
Period size: 44 Copynumber: 7.3 Consensus size: 44
11666251 GGAGATGGTG
**
11666261 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
* * * *
11666305 AATCCTATCTGCTTGAGATTACAGTGGAGCGGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAAT--AGT
* * * *** *
11666349 GATCTTATCTCTCTGA-AGTTATAGTAGAGTAGATCTCATCAGATTGAAGCCAGA
1 AATCTTATCTCCCTGAGA-TTACAGT-G-G-AG-------CAGATTGAAAATAGT
* * * **
11666403 AATCTTATCTCCCTGATATTACAGCGGAGTAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
* *
11666447 AATCCTATCTCCCTGAGATTACAGTGCAGCAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAAT--AGT
* * * ** *
11666491 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCTAGA
1 AATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAAATAGT
* **
11666545 AATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
*
11666589 AATCCTATCTCCC
1 AATCTTATCTCCC
11666602 AAGTGGTGCA
Statistics
Matches: 221, Mismatches: 44, Indels: 64
0.67 0.13 0.19
Matches are distributed among these distances:
43 9 0.04
44 133 0.60
45 5 0.02
46 1 0.00
47 4 0.02
49 3 0.01
51 4 0.02
52 1 0.00
53 5 0.02
54 48 0.22
55 8 0.04
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
Found at i:11666517 original size:142 final size:142
Alignment explanation
Indices: 11666261--11666601 Score: 574
Period size: 142 Copynumber: 2.4 Consensus size: 142
11666251 GGAGATGGTG
* *
11666261 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTGCTTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* * * * *
11666326 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCTCATCAG
66 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
11666391 ATTGAAGCCAGA
131 ATTGAAGCCAGA
* * *
11666403 AATCTTATCTCCCTGATATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
11666468 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
*
11666533 ATTGAAGCTAGA
131 ATTGAAGCCAGA
*
11666545 AATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
11666602 AAGTGGTGCA
Statistics
Matches: 184, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 184 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (142 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
ATTGAAGCCAGA
Found at i:11666692 original size:50 final size:50
Alignment explanation
Indices: 11666619--11666977 Score: 301
Period size: 50 Copynumber: 7.2 Consensus size: 50
11666609 GCAGTAGAGT
* *
11666619 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * *
11666669 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCCAGGCGA-TGCAGTGAAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCC-GAC-ATTGCAGTTAAAA
* * * *
11666719 AGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * * ** *
11666769 GGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
11666819 AGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCT-TCCCCGACATTGCAGTTAAAA
* * * * * * ** * * * **
11666869 AGACTAAAGCCACAACTGTGAGTGTTACTTCCCTGGTAATCCAGTGAAGT
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
11666919 AGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTCCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
11666969 AGATTAAAG
1 AGATTAAAG
11666978 TGACCACGAC
Statistics
Matches: 232, Mismatches: 71, Indels: 12
0.74 0.23 0.04
Matches are distributed among these distances:
49 7 0.03
50 220 0.95
51 5 0.02
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:11667138 original size:101 final size:100
Alignment explanation
Indices: 11666619--11667128 Score: 478
Period size: 100 Copynumber: 5.1 Consensus size: 100
11666609 GCAGTAGAGT
* * * *
11666619 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAG-CTACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAAGATTAAAGTC-ACA
* * *
11666683 A-CAGCGAATCTTACTCCCCAGGC-GATGCAGTGAAAC
65 ATGA-CGAATCTTACTTCCCAGGCAG-TGCAGTGGAAC
* * *
11666719 AGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGACATTGCAGCTAAAAGGATTAAAG-CTACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAAGATTAAAGTC-ACA
*
11666783 A-CAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
65 ATGA-CGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
* * * *
11666819 AGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAAAGACTAAAGCCACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCC-GACATTGCAGCTAAAAAGATTAAAGTCACA
* * * * * * * *
11666883 ACTG-TGAGTGTTACTTCCCTGGTAATCCAGT-GAAGT
65 A-TGACGAATCTTACTTCCCAGGCAGTGCAGTGGAA-C
* * * * *
11666919 AGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTCCAGTTAAAAAGATTAAAGTGACCA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAAGATTAAAGTCACAA
* * * ** * *
11666984 CGACGAATCTCACTCTCTCAACCAGTGCAGTAGAGC
66 TGACGAATCTTACT-TCCCAGGCAGTGCAGTGGAAC
* * * * * **
11667020 AGATTAAAGTCATAACAGTGAATCTTGCTTTTCCGACATTGCAGCGAAGCAGATTAAAGTCACAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAAGATTAAAGTCACAA
* *
11667085 TGACAAATATTACTTTCCCAGGCAGTGCAGTGGAAC
66 TGACGAATCTTAC-TTCCCAGGCAGTGCAGTGGAAC
11667121 AGATTAAA
1 AGATTAAA
11667129 ACTACAACAG
Statistics
Matches: 335, Mismatches: 64, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
99 8 0.02
100 222 0.66
101 102 0.30
102 3 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (100 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAAGATTAAAGTCACAA
TGACGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
Found at i:11669787 original size:6 final size:7
Alignment explanation
Indices: 11669768--11669810 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
11669758 AAAAAAAAGG
11669768 TGAAAAA
1 TGAAAAA
11669775 TGAAAAA
1 TGAAAAA
11669782 TGAAAAA
1 TGAAAAA
11669789 TG-AAAA
1 TGAAAAA
11669795 TGAAAAA
1 TGAAAAA
11669802 -GTAAAAA
1 TG-AAAAA
11669809 TG
1 TG
11669811 GAGAGGCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 7 0.21
7 25 0.76
8 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:11669794 original size:20 final size:20
Alignment explanation
Indices: 11669771--11669810 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
11669761 AAAAAGGTGA
11669771 AAAATGAAAAA-TGAAAAATG
1 AAAATGAAAAAGT-AAAAATG
11669791 AAAATGAAAAAGTAAAAATG
1 AAAATGAAAAAGTAAAAATG
11669811 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAATGAAAAAGTAAAAATG
Found at i:11671443 original size:142 final size:141
Alignment explanation
Indices: 11671187--11671525 Score: 570
Period size: 142 Copynumber: 2.4 Consensus size: 141
11671177 GGAGATGGTG
* *
11671187 AATCTTATCACCCTAAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTGCTTAAGATTA
1 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCT-CTTAAGATTA
* * *
11671252 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCTCATCAG
65 CAGTGCAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
11671317 ATTGAAGCCAAA
130 ATTGAAGCCAAA
* * * *
11671329 AATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAGATTA
1 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCT-TAAGATTA
11671394 CAGTGCAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
65 CAGTGCAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
*
11671459 ATTGAAGCCAGA
130 ATTGAAGCCAAA
11671471 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTC
1 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTC
11671526 CCAAGCGGTG
Statistics
Matches: 183, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
141 2 0.01
142 181 0.99
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (141 bp):
AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCTTAAGATTAC
AGTGCAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGA
TTGAAGCCAAA
Found at i:11671618 original size:50 final size:50
Alignment explanation
Indices: 11671545--11671902 Score: 247
Period size: 50 Copynumber: 7.2 Consensus size: 50
11671535 GCAGTAGAGC
* * *
11671545 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * *
11671595 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCCAGGCGA-TGCAGTGAAAC
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCC-GAC-ATTGCAGTTAAAA
* * *
11671645 AGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * * ** *
11671695 GGATTAAAGCTACAATAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * ** *
11671745 AGATTAAAGCCACAA-GGTGAATCTTG-TCTCTCTAACATTGTAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCT-TCCCCGACATTGCAGTTAAAA
* * * * * * * * ** **
11671794 AGATTAAAGCCACAGCTGTGAGTGTTACTTCCCTGGCAATGCAGCGAAGC
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * *
11671844 AGATTAAAGCCACAACGGTAAATCTTGCTTTCTCGACATTCCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
11671894 GGATTAAAG
1 AGATTAAAG
11671903 TGACCACGAC
Statistics
Matches: 225, Mismatches: 76, Indels: 14
0.71 0.24 0.04
Matches are distributed among these distances:
48 1 0.00
49 40 0.18
50 178 0.79
51 6 0.03
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:11671901 original size:199 final size:200
Alignment explanation
Indices: 11671522--11672084 Score: 533
Period size: 199 Copynumber: 2.8 Consensus size: 200
11671512 AGTAATCCTA
* * * * *
11671522 TCTCCCAAGCGGTGCAGTAGAGCAGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGC
1 TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACA-AGGTGAATCTTGCTTCCCCAACATTGC
* * *
11671587 AGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATGCAGTGAAACAGATTAA
65 AGTTAAAAAGATTAAAGCCACAACAGCGAATCTTACTCCCCAGGCAATGCAGCGAAACAGATTAA
* * *
11671652 AGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAAAGCT-ACAATAG-CG
130 AGCCACAACAGTAAATCTTGCTTTCCCGACATTCCAGCTAAAAGGATTAAAG-TGACAA-AGACG
*
11671715 AATCTTAC
193 AATCTCAC
* * * * *
11671723 T-TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAAGGTGAATCTTG-TCTCTCTAACATTGT
1 TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACAAGGTGAATCTTGCT-TCCCCAACATTGC
* * * * * * * *
11671786 AGTTAAAAAGATTAAAGCCACAGCTGTGAGTGTTACTTCCCTGGCAATGCAGCGAAGCAGATTAA
65 AGTTAAAAAGATTAAAGCCACAACAGCGAATCTTACTCCCCAGGCAATGCAGCGAAACAGATTAA
* * * * *
11671851 AGCCACAACGGTAAATCTTGCTTTCTCGACATTCCAGTTAAAAGGATTAAAGTGACCACGACGAA
130 AGCCACAACAGTAAATCTTGCTTTCCCGACATTCCAGCTAAAAGGATTAAAGTGACAAAGACGAA
11671916 TCTCAC
195 TCTCAC
* * * * ** **
11671922 TCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCATAATAGTGAATCTTGCTTTTCTGACATTGC
1 TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACAA-GGTGAATCTTGCTTCCCCAACATTGC
* ** * * * * ** * *
11671987 AGCTAAAGGGATTAAAGTCACAA-TGACCAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGATT
65 AGTTAAAAAGATTAAAGCCACAACAG-CGAATCTTAC-TCCCCAGGCAATGCAGCGAAACAGATT
* * * ** *
11672051 GAAGCTACAACAGCAAATCTCACTTCCCCGACAT
128 AAAGCCACAACAGTAAATCTTGCTTTCCCGACAT
11672085 CTCAGTTAAG
Statistics
Matches: 292, Mismatches: 62, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
198 3 0.01
199 133 0.46
200 63 0.22
201 45 0.15
202 48 0.16
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (200 bp):
TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACAAGGTGAATCTTGCTTCCCCAACATTGCA
GTTAAAAAGATTAAAGCCACAACAGCGAATCTTACTCCCCAGGCAATGCAGCGAAACAGATTAAA
GCCACAACAGTAAATCTTGCTTTCCCGACATTCCAGCTAAAAGGATTAAAGTGACAAAGACGAAT
CTCAC
Found at i:11672070 original size:101 final size:100
Alignment explanation
Indices: 11671524--11672063 Score: 452
Period size: 100 Copynumber: 5.4 Consensus size: 100
11671514 TAATCCTATC
* * * * * * * ** *
11671524 TCCCAAGCGGTGCAGTAGAGCAGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAG
1 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCAG
* * *
11671589 TTAAAAAGATTAAAG-CTACAA-CAGCGAATCTTACT
66 CTAAAAGGATTAAAGTC-ACAATGA-CGAATCTTACT
* * * * *
11671624 CCCCAGGC-GATGCAGTGAAACAGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCA
1 TCCCAGGCAG-TGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCA
11671688 GCTAAAAGGATTAAAG-CTACAAT-AGCGAATCTTACT
65 GCTAAAAGGATTAAAGTC-ACAATGA-CGAATCTTACT
* * * *
11671724 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAA-GGTGAATCTTG-TCTCTCTAACATTGTA
1 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCT-TTTCTGACATTGCA
* * * * * * *
11671787 GTTAAAAAGATTAAAGCCACAGCTG-TGAGTGTTACT
65 GCTAAAAGGATTAAAGTCACA-ATGACGAATCTTACT
* * * * * *
11671823 TCCCTGGCAATGCAG-CGAAGCAGATTAAAGCCACAACGGTAAATCTTGC-TTTCTCGACATTCC
1 TCCCAGGCAGTGCAGTGGAA-CAGATTAAAGCCACAACAGTGAATCTTGCTTTTCT-GACATTGC
* * * * *
11671886 AGTTAAAAGGATTAAAGTGACCACGACGAATCTCACT
64 AGCTAAAAGGATTAAAGTCACAATGACGAATCTTACT
* * * * * *
11671923 CTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCATAATAGTGAATCTTGCTTTTCTGACATTGCA
1 -TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCA
* *
11671988 GCTAAAGGGATTAAAGTCACAATGACCAATCTTACTT
65 GCTAAAAGGATTAAAGTCACAATGACGAATCTTAC-T
* * *
11672025 TCCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAG
1 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAG
11672064 CAAATCTCAC
Statistics
Matches: 354, Mismatches: 70, Indels: 31
0.78 0.15 0.07
Matches are distributed among these distances:
98 4 0.01
99 79 0.22
100 160 0.45
101 103 0.29
102 8 0.02
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (100 bp):
TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCAG
CTAAAAGGATTAAAGTCACAATGACGAATCTTACT
Found at i:11672696 original size:16 final size:16
Alignment explanation
Indices: 11672675--11672710 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
11672665 AACAAACAAA
*
11672675 AAAAGCACAGTAAAAG
1 AAAAGCACAGAAAAAG
*
11672691 AAAAGCAGAGAAAAAG
1 AAAAGCACAGAAAAAG
11672707 AAAA
1 AAAA
11672711 AAAGAATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.69, C:0.08, G:0.19, T:0.03
Consensus pattern (16 bp):
AAAAGCACAGAAAAAG
Found at i:11674214 original size:43 final size:43
Alignment explanation
Indices: 11674152--11674236 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
11674142 TGTTAATATG
*
11674152 TACATGTAATATGTGATTATGAATGTTATGTACTTTATATTAA
1 TACATGTAATATGTAATTATGAATGTTATGTACTTTATATTAA
11674195 TACATGTAATATGTAATTATGAATGTTATGTACTTTATATTA
1 TACATGTAATATGTAATTATGAATGTTATGTACTTTATATTA
11674237 TCTCGTTTGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (43 bp):
TACATGTAATATGTAATTATGAATGTTATGTACTTTATATTAA
Found at i:11681658 original size:23 final size:22
Alignment explanation
Indices: 11681615--11681658 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
11681605 TTCTAAGTCG
11681615 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
11681638 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
11681659 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:11681767 original size:45 final size:45
Alignment explanation
Indices: 11681703--11681796 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
11681693 AATAGATACT
* * *
11681703 CGGTGGATTCAGCACATAGCAACCACATTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACATTACTAATCAATAATGTC
* *
11681748 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTT
1 CGGTGGAATCAGCACATAGCAACCACATTACTAATCAATAATGTC
11681793 CGGT
1 CGGT
11681797 TCACATAGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACATTACTAATCAATAATGTC
Found at i:11681859 original size:50 final size:50
Alignment explanation
Indices: 11681802--11681977 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 50
11681792 TCGGTTCACA
* *
11681802 TAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCCTACTATCTGATACACG
* *** * * * *
11681852 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCCTACTATCTGATACACG
* * *
11681903 TAGTAGCCTGCACATAGTACTACACATGCGA-CCTATTAT-TCCAGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCCTACTATCT-GA-TACACG
*
11681953 TAGTAGCCTACACATAGTACTACAC
1 TAGTAGCCTGCACATAGTACTACAC
11681978 GCAATCCGTG
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
49 4 0.04
50 57 0.56
51 40 0.40
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCCTACTATCTGATACACG
Found at i:11684812 original size:41 final size:42
Alignment explanation
Indices: 11684755--11684945 Score: 156
Period size: 41 Copynumber: 4.6 Consensus size: 42
11684745 CATTGAATGT
* *
11684755 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGA-TCAAA
1 AAGGGGTTGCTAAGTGCTGATTCCCCAAATCACTGATTCAAA
* * *
11684796 AAGGGGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAA
1 AAGGGGTTGCTAAGTGCTGATTCCCCAAATCACTGATTCAAA
* *** ****
11684838 AAGTGGTTGCTAAGTGCTGATTCCACCGTGTC-CTTGATTGTGG
1 AAGGGGTTGCTAAGTGCTGATTCC-CCAAATCAC-TGATTCAAA
* *** * *
11684881 AAGGGGTTGCTATGTGCTGATTCCCTGTATCACTGAAT--AT
1 AAGGGGTTGCTAAGTGCTGATTCCCCAAATCACTGATTCAAA
11684921 AAGGTGGTTGCTAAGTGCTGATTCC
1 AAGG-GGTTGCTAAGTGCTGATTCC
11684946 ACCGAGTAAC
Statistics
Matches: 123, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
40 4 0.03
41 51 0.41
42 36 0.29
43 32 0.26
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCAAATCACTGATTCAAA
Found at i:11687005 original size:14 final size:14
Alignment explanation
Indices: 11686986--11687045 Score: 68
Period size: 14 Copynumber: 4.1 Consensus size: 14
11686976 AGCCTCTAAC
11686986 TTACACAATGAATT
1 TTACACAATGAATT
11687000 TTACACAATGAATTT
1 TTACACAATGAA-TT
*
11687015 TCTATCACCCAT-AATT
1 T-TA-CA-CAATGAATT
11687031 TTACACAATGAATT
1 TTACACAATGAATT
11687045 T
1 T
11687046 ACTTACTCGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 3 0.08
14 19 0.49
15 5 0.13
16 5 0.13
17 4 0.10
18 3 0.08
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (14 bp):
TTACACAATGAATT
Found at i:11689845 original size:45 final size:45
Alignment explanation
Indices: 11689781--11689874 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
11689771 AACAGATACT
* * * *
11689781 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTC
*
11689826 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTT
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTC
11689871 CGGT
1 CGGT
11689875 TCACATAGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTC
Found at i:11689937 original size:50 final size:50
Alignment explanation
Indices: 11689880--11690063 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
11689870 TCGGTTCACA
* * *
11689880 TAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCTACCATCTGGTACACG
*** * * * *
11689930 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCCTACCATCTGGTACACG
* * * *
11689981 TAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCTACCATCT-GGTACACG
11690031 TAGTAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
11690064 AGCACTTTCA
Statistics
Matches: 108, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.03
50 64 0.59
51 41 0.38
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCCTACCATCTGGTACACG
Found at i:11690053 original size:101 final size:101
Alignment explanation
Indices: 11689878--11690061 Score: 307
Period size: 101 Copynumber: 1.8 Consensus size: 101
11689868 GTTCGGTTCA
* *
11689878 CATAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTGATACACGTAGTAGCCTGCAC
11689943 ATAGTACTACACACGTGATCGAAACTATCCGGTACG
66 ATAGTACTACACACGTGATCGAAACTATCCGGTACG
* * *
11689979 CATAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCT-GATACACGTAGTAGCCTGCA
11690043 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
11690062 CCAGCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 8 0.10
101 69 0.90
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:11694762 original size:29 final size:30
Alignment explanation
Indices: 11694721--11694782 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
11694711 ATTTATGAGC
11694721 TTTAGGGAAAAAG-TGTAAATATGCAAAAG
1 TTTAGGGAAAAAGTTGTAAATATGCAAAAG
** * * *
11694750 TTTAGGGGCAAAGTTGTAATTTTGCCAAAG
1 TTTAGGGAAAAAGTTGTAAATATGCAAAAG
11694780 TTT
1 TTT
11694783 GAGTCAAGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.32
Consensus pattern (30 bp):
TTTAGGGAAAAAGTTGTAAATATGCAAAAG
Found at i:11695000 original size:18 final size:17
Alignment explanation
Indices: 11694967--11695005 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
11694957 TTTTATAATT
11694967 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
11694985 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
11695002 TGTG
1 TGTG
11695006 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:11695257 original size:23 final size:23
Alignment explanation
Indices: 11695231--11695349 Score: 170
Period size: 23 Copynumber: 5.2 Consensus size: 23
11695221 GTGTTATTGA
11695231 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
11695254 TCAGTGGTAGCTACGGCTACATAT
1 TCAGTGGTAGCTTCGGCTACAT-T
*
11695278 T-AGTGGTAGCTTCAGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
* *
11695300 T-AGTGGTAGCTACGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
*
11695322 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
11695345 TCAGT
1 TCAGT
11695350 ATGACACTTA
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
22 21 0.24
23 64 0.74
24 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:11695320 original size:45 final size:46
Alignment explanation
Indices: 11695230--11695349 Score: 206
Period size: 45 Copynumber: 2.6 Consensus size: 46
11695220 AGTGTTATTG
11695230 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
* *
11695276 ATTAGTGGTAGCTTCAGCTACATTT-AGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
*
11695321 ATCAGTGGTAGCTTCGGCTACATATCAGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGT
11695350 ATGACACTTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
45 42 0.62
46 26 0.38
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
Found at i:11698102 original size:28 final size:28
Alignment explanation
Indices: 11698069--11698156 Score: 140
Period size: 28 Copynumber: 3.1 Consensus size: 28
11698059 GTATCAGTAT
*
11698069 AGTGTGGGCCTTAGCCCATTACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
11698097 AGTGTGGGCCTTAGCCCAATACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
* *
11698125 AATGTGGGCCTTAGCTCAATACAGTAATC
1 AGTGTGGGCCTTAGCCCAATACAGTAA-C
11698154 AGT
1 AGT
11698157 ACAATACAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
28 52 0.95
29 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAC
Found at i:11698552 original size:27 final size:28
Alignment explanation
Indices: 11698503--11698691 Score: 121
Period size: 27 Copynumber: 7.0 Consensus size: 28
11698493 GGTATAACGG
* *
11698503 TCATTTTACCCTATAGG-GATATTTCAGA
1 TCATTTTACCCT-TTGGAGGTATTTCAGA
* *
11698531 -CATTTTACCCTTTGGAGGTATTT-TGG
1 TCATTTTACCCTTTGGAGGTATTTCAGA
* * * *
11698557 TCCTTTTA-CCATTCGAGGGTATTT-TGA
1 TCATTTTACCCTTTGGA-GGTATTTCAGA
*
11698584 TAATTTTACCCTTT-GAGGGTATTTC-GA
1 TCATTTTACCCTTTGGA-GGTATTTCAGA
* * *
11698611 TCATTTTACCCTTCGGGGGTATTTTAG-
1 TCATTTTACCCTTTGGAGGTATTTCAGA
*
11698638 TAATTTTACCCTTT-GAGGGTATTTC-GA
1 TCATTTTACCCTTTGGA-GGTATTTCAGA
* *
11698665 TAATTTTACCC-TTCGAGCGTATTTCAG
1 TCATTTTACCCTTTGGAG-GTATTTCAG
11698692 TCCCATTACG
Statistics
Matches: 130, Mismatches: 19, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
26 15 0.12
27 108 0.83
28 7 0.05
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (28 bp):
TCATTTTACCCTTTGGAGGTATTTCAGA
Found at i:11698580 original size:54 final size:53
Alignment explanation
Indices: 11698503--11698691 Score: 213
Period size: 54 Copynumber: 3.5 Consensus size: 53
11698493 GGTATAACGG
* *
11698503 TCATTTTACCCTAT--AGGGATATTTCAGACATTTTACCCTTTG-GAGGTATTTTGG
1 TCATTTTACCCT-TCGAGGG-TATTTCAGA-ATTTTACCCTTTGAG-GGTATTTCGA
* * * *
11698557 TCCTTTTACCATTCGAGGGTATTTTGATAATTTTACCCTTTGAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTA-TTTCAGAATTTTACCCTTTGAGGGTATTTCGA
* *
11698611 TCATTTTACCCTTCGGGGGTATTTTAGTAATTTTACCCTTTGAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCAG-AATTTTACCCTTTGAGGGTATTTCGA
* *
11698665 TAATTTTACCCTTCGAGCGTATTTCAG
1 TCATTTTACCCTTCGAGGGTATTTCAG
11698692 TCCCATTACG
Statistics
Matches: 115, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
53 5 0.04
54 100 0.87
55 10 0.09
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (53 bp):
TCATTTTACCCTTCGAGGGTATTTCAGAATTTTACCCTTTGAGGGTATTTCGA
Done.