Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 40 of 185
Found at i:11698632 original size:81 final size:81
Alignment explanation
Indices: 11698505--11698691 Score: 243
Period size: 81 Copynumber: 2.3 Consensus size: 81
11698495 TATAACGGTC
* * * **
11698505 ATTTTACCCTAT-AGGGATATTTCAGACATTTTACCCTTTGGAGGTATTTTGGTCCTTTTACCAT
1 ATTTTACCCTTTGAGGG-TATTTCAGACATTTTACCCTTCGGAGGTATTTTAGTAATTTTACCAT
*
11698569 TCGAGGGTATTTTGATA
65 TCGAGGGTATTTCGATA
* *
11698586 ATTTTACCCTTTGAGGGTATTTC-GATCATTTTACCCTTCGGGGGTATTTTAGTAATTTTACCCT
1 ATTTTACCCTTTGAGGGTATTTCAGA-CATTTTACCCTTCGGAGGTATTTTAGTAATTTTACCAT
*
11698650 TTGAGGGTATTTCGATA
65 TCGAGGGTATTTCGATA
* *
11698667 ATTTTACCCTTCGAGCGTATTTCAG
1 ATTTTACCCTTTGAGGGTATTTCAG
11698692 TCCCATTACG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.02
81 85 0.92
82 5 0.05
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (81 bp):
ATTTTACCCTTTGAGGGTATTTCAGACATTTTACCCTTCGGAGGTATTTTAGTAATTTTACCATT
CGAGGGTATTTCGATA
Found at i:11705180 original size:26 final size:26
Alignment explanation
Indices: 11705111--11705187 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
11705101 CAGTTCACAG
* * * *
11705111 CAAAGCTGCTAGTAATAATAATGCAG
1 CAAAGCTGCTAGTAACAGTAATGTAA
*
11705137 CAAAGCTGCGAGTAACAGTAATGTAA
1 CAAAGCTGCTAGTAACAGTAATGTAA
*
11705163 CAAAGCTACTAGTAACAGTATATGT
1 CAAAGCTGCTAGTAACAGTA-ATGT
11705188 GGCATAGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 39 0.91
27 4 0.09
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (26 bp):
CAAAGCTGCTAGTAACAGTAATGTAA
Found at i:11705203 original size:27 final size:26
Alignment explanation
Indices: 11705147--11705203 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 26
11705137 CAAAGCTGCG
* *
11705147 AGTAACAGTAATGTAACAAAGCTACT
1 AGTAACAGTAATGTAACAAAGCCACC
** *
11705173 AGTAACAGTATATGTGGCATAGCCACC
1 AGTAACAGTA-ATGTAACAAAGCCACC
11705200 AGTA
1 AGTA
11705204 TAGTATACTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (26 bp):
AGTAACAGTAATGTAACAAAGCCACC
Found at i:11705271 original size:32 final size:32
Alignment explanation
Indices: 11705230--11705295 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
11705220 TATCAGAATC
*
11705230 TCATGTCATAAATCATACGTGTATGTAGTATG
1 TCATGTCATAAACCATACGTGTATGTAGTATG
*
11705262 TCATGTCATAAACCATACGTGTATGTAGTCTG
1 TCATGTCATAAACCATACGTGTATGTAGTATG
11705294 TC
1 TC
11705296 GTACTCAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (32 bp):
TCATGTCATAAACCATACGTGTATGTAGTATG
Found at i:11705551 original size:108 final size:108
Alignment explanation
Indices: 11705389--11705692 Score: 402
Period size: 108 Copynumber: 2.8 Consensus size: 108
11705379 TATAAAGGTT
* ** *
11705389 ATTTTACCCTATAGGGATATTTCGGTCATTTTATCC-TTCGGGGGTATTTCAGACATTTTACCCT
1 ATTTTACCCTATAGGGGTATTTTAGTCATTTTA-CCTTTCGGGGGTATTTTAGACATTTTACCCT
*** * *
11705453 TTGGGGGTATTTTGGTCATTTTACCGTTTAGGGATATTTTGGTA
65 TCAAGGGTATTTTGGTCATTTTACCATTCAGGGATATTTTGGTA
11705497 ATTTTACCCTATAGGGGTATTTTAGTCATTTTACCTTTCGGGGGTATTTTAGACATTTTACCCTT
1 ATTTTACCCTATAGGGGTATTTTAGTCATTTTACCTTTCGGGGGTATTTTAGACATTTTACCCTT
*
11705562 CAAGGGTATTTTGATCATTTTACCATTCAGGGATATTTTGGTA
66 CAAGGGTATTTTGGTCATTTTACCATTCAGGGATATTTTGGTA
* * * *
11705605 ATTTTACCCT-TCGAGGGTA-TTTCGATAATTTTACCTTTC-TGGGTATTTTAGTA-ATTTTACC
1 ATTTTACCCTATAG-GGGTATTTTAG-TCATTTTACCTTTCGGGGGTATTTTAG-ACATTTTACC
*
11705666 CTTCAAGGGTATTTTGGTAATTTTACC
63 CTTCAAGGGTATTTTGGTCATTTTACC
11705693 CTTTGAGAGT
Statistics
Matches: 176, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
107 52 0.30
108 124 0.70
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (108 bp):
ATTTTACCCTATAGGGGTATTTTAGTCATTTTACCTTTCGGGGGTATTTTAGACATTTTACCCTT
CAAGGGTATTTTGGTCATTTTACCATTCAGGGATATTTTGGTA
Found at i:11705750 original size:27 final size:27
Alignment explanation
Indices: 11705389--11705759 Score: 301
Period size: 27 Copynumber: 13.8 Consensus size: 27
11705379 TATAAAGGTT
* *
11705389 ATTTTACCCTAT--AGGGATATTTCGGTC
1 ATTTTACCCT-TCGAGGG-TATTTTGGTA
* * **
11705416 ATTTTATCCTTCGGGGGTATTTCAG-A
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* * *
11705442 CATTTTACCCTTTGGGGGTATTTTGGTC
1 -ATTTTACCCTTCGAGGGTATTTTGGTA
* *
11705470 ATTTTACCGTT-TAGGGATATTTTGGTA
1 ATTTTACCCTTCGAGGG-TATTTTGGTA
* * *
11705497 ATTTTACCCTATAG-GGGTATTTTAGTC
1 ATTTTACCCT-TCGAGGGTATTTTGGTA
* * *
11705524 ATTTTACCTTTCGGGGGTATTTTAG-A
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* * *
11705550 CATTTTACCCTTCAAGGGTATTTTGATC
1 -ATTTTACCCTTCGAGGGTATTTTGGTA
*
11705578 ATTTTACCATTC-AGGGATATTTTGGTA
1 ATTTTACCCTTCGAGGG-TATTTTGGTA
* *
11705605 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* * *
11705632 ATTTTACCTTTC-TGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
*
11705658 ATTTTACCCTTCAAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* * **
11705685 ATTTTACCCTTTGAGAGT-TTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
* *
11705711 ATTTTACCCTTCGAGGATATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTTGGTA
**
11705738 ATTTTACCCTTCGTTGGTATTT
1 ATTTTACCCTTCGAGGGTATTT
11705760 CGGTCCTATT
Statistics
Matches: 278, Mismatches: 52, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
26 52 0.19
27 215 0.77
28 11 0.04
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTTGGTA
Found at i:11709233 original size:21 final size:23
Alignment explanation
Indices: 11709190--11709235 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
11709180 GCTGCCGAAA
**
11709190 TTAAATAGATGATATAATGCTCC
1 TTAAATAGATGATATAAACCTCC
11709213 TTAAAT-GATG-TATAAACCTCC
1 TTAAATAGATGATATAAACCTCC
11709234 TT
1 TT
11709236 TGTAACAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
22 4 0.19
23 6 0.29
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (23 bp):
TTAAATAGATGATATAAACCTCC
Found at i:11709790 original size:50 final size:52
Alignment explanation
Indices: 11709664--11709795 Score: 144
Period size: 50 Copynumber: 2.6 Consensus size: 52
11709654 AAACTAAATG
* *
11709664 AGTTACTTAATGCA-AAGGCTTAATTTAATGATGCAGACTTAAACTAACATGGG
1 AGTTACTTAATGCATAA--CTTTATTTAATGATGCAGACTTAAACTAACATGGA
* ** * * *
11709717 AGTTACATAATGCATGTCATTATTT-ATGATGCATACTT-AACTAGCATGGA
1 AGTTACTTAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
*
11709767 AGTTACTTAATGCATAACTTTATTAAATG
1 AGTTACTTAATGCATAACTTTATTTAATG
11709796 CAAAACACAC
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
50 30 0.47
51 15 0.23
52 6 0.09
53 13 0.20
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (52 bp):
AGTTACTTAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
Found at i:11721609 original size:30 final size:32
Alignment explanation
Indices: 11721573--11721634 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 32
11721563 CCCTATGAGC
*
11721573 TCAAAAAAATAAA-AA-AATAAA-AAAAATCAA
1 TCAAAAAAACAAAGAAGAA-AAAGAAAAATCAA
11721603 TCAAAAAAACAAAGAAGAAAAAGAAAAATCAA
1 TCAAAAAAACAAAGAAGAAAAAGAAAAATCAA
11721635 AACCAAGGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 12 0.43
31 5 0.18
32 11 0.39
ACGTcount: A:0.77, C:0.08, G:0.05, T:0.10
Consensus pattern (32 bp):
TCAAAAAAACAAAGAAGAAAAAGAAAAATCAA
Found at i:11724079 original size:44 final size:43
Alignment explanation
Indices: 11724031--11724192 Score: 105
Period size: 44 Copynumber: 3.4 Consensus size: 43
11724021 CTAGTAATCC
11724031 TATCTGCTTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCT
1 TATCT-CTTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCT
* * * *
11724075 TATCTCTCTGA-AGTTACAGTAGAGTAGATCTCATCAGATTGAAGCCAAA-AATCT
1 TATCTCT-TGAGA-TTACAGT-G-G-AG-------CGGATT-AAACTAAAGGATCT
*
11724129 TATCTCCCTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCT
1 TATCT-CTTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCT
11724173 TATCTCTCTGA-AGTTACAGT
1 TATCTCT-TGAGA-TTACAGT
11724193 AGAGTAGATC
Statistics
Matches: 90, Mismatches: 10, Indels: 36
0.66 0.07 0.26
Matches are distributed among these distances:
43 11 0.12
44 39 0.43
45 1 0.01
46 1 0.01
47 2 0.02
51 2 0.02
52 1 0.01
53 1 0.01
54 24 0.27
55 8 0.09
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (43 bp):
TATCTCTTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCT
Found at i:11724146 original size:98 final size:98
Alignment explanation
Indices: 11724011--11724250 Score: 417
Period size: 98 Copynumber: 2.4 Consensus size: 98
11724001 TATAGCGGAG
* ** * * *
11724011 CAGATTGAAGCTAGTAATCCTATCTGCTTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCTT
1 CAGATTGAAGCCAAAAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCTT
11724076 ATCTCTCTGAAGTTACAGTAGAGTAGATCTCAT
66 ATCTCTCTGAAGTTACAGTAGAGTAGATCTCAT
11724109 CAGATTGAAGCCAAAAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCTT
1 CAGATTGAAGCCAAAAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCTT
11724174 ATCTCTCTGAAGTTACAGTAGAGTAGATCTCAT
66 ATCTCTCTGAAGTTACAGTAGAGTAGATCTCAT
*
11724207 CAGATTGAAGCCAAAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCCAAAAATCTTATCTCCCTGAGATTACAGTGGAG
11724251 TAGATTGAAC
Statistics
Matches: 135, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 135 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (98 bp):
CAGATTGAAGCCAAAAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAACTAAAGGATCTT
ATCTCTCTGAAGTTACAGTAGAGTAGATCTCAT
Found at i:11724369 original size:50 final size:50
Alignment explanation
Indices: 11724296--11724761 Score: 301
Period size: 50 Copynumber: 9.3 Consensus size: 50
11724286 GCAGTAGAGC
* *
11724296 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * *
11724346 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCCAGGCGA-TGCAGTGAAAT
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCC-GAC-ATTGCAGTTAAAA
* * *
11724396 AGATTAAAGCCACATCGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * * ** *
11724446 GGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
11724496 AGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCT-TCCCCGACATTGCAGTTAAAA
* * ** * * * * * * * **
11724546 AGACTAAAGCCACAGCTATGAGTGTTACTTCCCTGGCAATGCAGTGAAGC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * *
11724596 AGATTAAAGCCACAATGGTAAATCTTGTTTTCCCGACATTCCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* ** * ** ** * * * * **
11724646 GGATTAAAGTGACCACGACGAATCTCACTCTCTCAGCCAGTGCAG-TAGAGC
1 AGATTAAAGCCACAACGGTGAATCTTGCT-TCCCCGACATTGCAGTTA-AAA
* ** *
11724697 AGATTAAAGCCATAACGGTGAATCTTGCTTTTCCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
11724747 GGATTAAAGTCACAA
1 AGATTAAAGCCACAA
11724762 TGACGAATCT
Statistics
Matches: 297, Mismatches: 110, Indels: 18
0.70 0.26 0.04
Matches are distributed among these distances:
49 7 0.02
50 252 0.85
51 38 0.13
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:11724834 original size:101 final size:98
Alignment explanation
Indices: 11724284--11724836 Score: 536
Period size: 100 Copynumber: 5.5 Consensus size: 98
11724274 CTCCCAAGTG
* * * * *
11724284 GTGCAGTAGAGCAGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGA
1 GTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAGGA
*
11724349 TTAAAGCTACAACAGCGAATCTTACTCCCCAGGC-
66 TTAAAGC-ACAACA-CGAATCTTACTTCCCAGGCA
* * * * *
11724383 GATGCAGTGAAATAGATTAAAGCCACATCGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGG
1 G-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAGG
11724448 ATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCA
65 ATTAAAGC-ACAACA-CGAATCTTACTTCCCAGGCA
* *
11724484 GTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAAAG
1 GTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCT-TCCCCGACATTGCAGTTAAAAGG
* * * * * *
11724548 ACTAAAGCCACAGCTATGAGTGTTACTTCCCTGGCA
65 ATTAAAG-CACAAC-ACGAATCTTACTTCCCAGGCA
* * * * * *
11724584 ATGCAGT-GAAGCAGATTAAAGCCACAATGGTAAATCTTGTTTTCCCGACATTCCAGTTAAAAGG
1 GTGCAGTGGAA-CAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAGG
* * * * *
11724648 ATTAAAGTGACCACGACGAATCTCACTCTCTCAGCCA
65 ATTAAAG-CACAAC-ACGAATCTTACT-TCCCAGGCA
* * * ** *
11724685 GTGCAGTAGAGCAGATTAAAGCCATAACGGTGAATCTTGCTTTTCCGACATTGCAGCTAAAAGGA
1 GTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAGGA
* *
11724750 TTAAAGTCACAATGACGAATCTTACTTTCCCAGGCG
66 TTAAAG-CACAA-CACGAATCTTAC-TTCCCAGGCA
* * * * ** **
11724786 GTGCAATGGAACAGATTGAAGCTACAACAGCAAATCTCACTTCCCCGACAT
1 GTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
11724837 CCCAATTAAG
Statistics
Matches: 372, Mismatches: 71, Indels: 20
0.80 0.15 0.04
Matches are distributed among these distances:
99 5 0.01
100 237 0.64
101 127 0.34
102 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (98 bp):
GTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAGGA
TTAAAGCACAACACGAATCTTACTTCCCAGGCA
Found at i:11734009 original size:23 final size:22
Alignment explanation
Indices: 11733966--11734009 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
11733956 TTCTAAGTCG
11733966 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
11733989 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
11734010 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:11734118 original size:45 final size:45
Alignment explanation
Indices: 11734054--11734147 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
11734044 AACAGATACT
* * *
11734054 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
*
11734099 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
11734144 CGGT
1 CGGT
11734148 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
Found at i:11734210 original size:50 final size:50
Alignment explanation
Indices: 11734153--11734336 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
11734143 TCGGTTCACA
* *
11734153 TAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCTACCATCTGATACACG
*** * * * *
11734203 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCCTACCATCTGATACACG
* * * * *
11734254 TAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCAGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCTACCATCTGA-TACACG
11734304 TAGTAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
11734337 ATCACTTTCA
Statistics
Matches: 108, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
49 4 0.04
50 62 0.57
51 42 0.39
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCCTACCATCTGATACACG
Found at i:11734326 original size:101 final size:101
Alignment explanation
Indices: 11734151--11734334 Score: 307
Period size: 101 Copynumber: 1.8 Consensus size: 101
11734141 GTTCGGTTCA
* * *
11734151 CATAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTCATACACGTAGTAGCCTGCAC
11734216 ATAGTACTACACACGTGATCGAAACTATCTGGTACG
66 ATAGTACTACACACGTGATCGAAACTATCTGGTACG
* *
11734252 CATAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCAGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTCA-TACACGTAGTAGCCTGCA
11734316 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
11734335 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 9 0.12
101 68 0.88
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTCATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:11737517 original size:43 final size:41
Alignment explanation
Indices: 11737409--11737568 Score: 166
Period size: 41 Copynumber: 3.9 Consensus size: 41
11737399 CGGGATTCAT
* * * *
11737409 TGAATGTAAAGGGTTGCTAAGTGCAGATTCC-CCGAATCAC
1 TGAATATAAGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
*
11737449 TG-ATCAAAGAGGGGTTGCTAAGTGCTGATTCCACCGTATC-C
1 TGAAT-ATA-AGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
* * *
11737490 TTGATTGTGGAAGGGGTTGCTATGTGCTGATTCC-CCGTATCAC
1 -TGAATAT--AAGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
11737533 TGAATATAAGGTGGTTGCTAAGTGCTGATTCCACCG
1 TGAATATAAGG-GGTTGCTAAGTGCTGATTCCACCG
11737569 AGTAACGGTT
Statistics
Matches: 98, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
39 2 0.02
40 7 0.07
41 41 0.42
42 23 0.23
43 24 0.24
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
TGAATATAAGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
Found at i:11741328 original size:20 final size:19
Alignment explanation
Indices: 11741283--11741341 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 19
11741273 TCAAGTTCAT
11741283 TCAGCTCAATTTTAGCTC-A
1 TCAGCTC-ATTTTAGCTCAA
*
11741302 CCGAGCTCACTTTTAGCTCAA
1 TC-AGCTCA-TTTTAGCTCAA
11741323 TCAGCTCATTTTAAGCTCA
1 TCAGCTCATTTT-AGCTCA
11741342 TTTGCATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
19 6 0.18
20 26 0.76
21 2 0.06
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (19 bp):
TCAGCTCATTTTAGCTCAA
Found at i:11743564 original size:18 final size:17
Alignment explanation
Indices: 11743531--11743569 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
11743521 TTTTATAAAT
11743531 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
11743549 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
11743566 TGTG
1 TGTG
11743570 GAAGAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:11743821 original size:23 final size:23
Alignment explanation
Indices: 11743795--11743914 Score: 154
Period size: 23 Copynumber: 5.3 Consensus size: 23
11743785 GTGTTATTGA
11743795 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
* *
11743818 TCAGTGGTAGCTACAGCTACATAT
1 TCAGTGGTAGCTTCGGCTACAT-T
11743842 T-AGTGGTAGCTTCGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* * *
11743863 TCAGTGATAGCTACGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
* *
11743886 TCAGTGGTAGCTTTGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
11743909 TCAGTG
1 TCAGTG
11743915 TGACACTTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.02
22 17 0.20
23 63 0.75
24 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:11743882 original size:45 final size:45
Alignment explanation
Indices: 11743794--11743914 Score: 188
Period size: 45 Copynumber: 2.6 Consensus size: 45
11743784 AGTGTTATTG
*
11743794 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACA-TTCAGTGATAGCTACAGCTACAT
* *
11743840 ATTAGTGGTAGCTTCGGCTACATTCAGTGATAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTCAGTGATAGCTACAGCTACAT
*
11743885 ATCAGTGGTAGCTTTGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACAT-TCAGTG
11743915 TGACACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
45 42 0.61
46 27 0.39
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (45 bp):
ATCAGTGGTAGCTTCGGCTACATTCAGTGATAGCTACAGCTACAT
Found at i:11751259 original size:20 final size:20
Alignment explanation
Indices: 11751224--11751272 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
11751214 ACCATGGTAT
*
11751224 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
11751243 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
11751263 TTGCTTACTT
1 TTGCTTACTT
11751273 AAATTGTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:11752658 original size:27 final size:27
Alignment explanation
Indices: 11752628--11752805 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
11752618 ATATTGAGTC
* * * *
11752628 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
11752655 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
11752682 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
11752710 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
11752737 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
11752764 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
11752791 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
11752806 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:11752767 original size:82 final size:81
Alignment explanation
Indices: 11752649--11752804 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
11752639 TGCTATATAA
* *
11752649 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
11752714 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
11752731 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
11752795 CACTTAGTGC
65 CACTTAGTGC
11752805 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:11760965 original size:27 final size:27
Alignment explanation
Indices: 11760935--11761111 Score: 144
Period size: 27 Copynumber: 6.5 Consensus size: 27
11760925 ATATTGAGCC
* * *
11760935 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* * *
11760962 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
* *
11760989 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACATAAT-CAACT
* ** *
11761017 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
11761044 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* *
11761071 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCCACATAA-TCA-ACT
11761098 CGCACACTTAGTGC
1 CGCACACTTAGTGC
11761112 TGTACAATTT
Statistics
Matches: 122, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 95 0.78
28 24 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:11765966 original size:191 final size:191
Alignment explanation
Indices: 11765642--11766023 Score: 764
Period size: 191 Copynumber: 2.0 Consensus size: 191
11765632 ACGAAGTCGA
11765642 GTCATTTTACCCCAGTTCGTATGGATTATTCACTTGACAAGTTGGCTGAGTTGTATATTTTAGAG
1 GTCATTTTACCCCAGTTCGTATGGATTATTCACTTGACAAGTTGGCTGAGTTGTATATTTTAGAG
11765707 ATAGTCAGACTACATGGAGTACCGTTATCGATTATCTCAGATAGAGATCCGAGATTTACTTCGCG
66 ATAGTCAGACTACATGGAGTACCGTTATCGATTATCTCAGATAGAGATCCGAGATTTACTTCGCG
11765772 GTTTTCGAAGAAATTGCAGGAAGCTTTGGGCACAAAGTTGAGTTTTAGTACAGCTTTCCAT
131 GTTTTCGAAGAAATTGCAGGAAGCTTTGGGCACAAAGTTGAGTTTTAGTACAGCTTTCCAT
11765833 GTCATTTTACCCCAGTTCGTATGGATTATTCACTTGACAAGTTGGCTGAGTTGTATATTTTAGAG
1 GTCATTTTACCCCAGTTCGTATGGATTATTCACTTGACAAGTTGGCTGAGTTGTATATTTTAGAG
11765898 ATAGTCAGACTACATGGAGTACCGTTATCGATTATCTCAGATAGAGATCCGAGATTTACTTCGCG
66 ATAGTCAGACTACATGGAGTACCGTTATCGATTATCTCAGATAGAGATCCGAGATTTACTTCGCG
11765963 GTTTTCGAAGAAATTGCAGGAAGCTTTGGGCACAAAGTTGAGTTTTAGTACAGCTTTCCAT
131 GTTTTCGAAGAAATTGCAGGAAGCTTTGGGCACAAAGTTGAGTTTTAGTACAGCTTTCCAT
11766024 CCTCAGACCG
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
191 191 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (191 bp):
GTCATTTTACCCCAGTTCGTATGGATTATTCACTTGACAAGTTGGCTGAGTTGTATATTTTAGAG
ATAGTCAGACTACATGGAGTACCGTTATCGATTATCTCAGATAGAGATCCGAGATTTACTTCGCG
GTTTTCGAAGAAATTGCAGGAAGCTTTGGGCACAAAGTTGAGTTTTAGTACAGCTTTCCAT
Found at i:11767960 original size:50 final size:49
Alignment explanation
Indices: 11767892--11768029 Score: 168
Period size: 50 Copynumber: 2.8 Consensus size: 49
11767882 TATTTAGGTT
* * * *
11767892 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGTGTTAGTATAGAG
1 ATGAGAGGTCCC-CGTAAGACCATGTCTGGGACATGGCGTTAGCACAGAG
* *
11767942 ATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCC-GTAAGACCATGTCTGGGACATGGCGTTAGCACAGAG
* * *
11767992 ATCAGAGGTCCCCCGCAAGACCATATCTGGGACATGGC
1 ATGAGAGGT-CCCCGTAAGACCATGTCTGGGACATGGC
11768030 ATGGGCACCG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 1 0.01
50 72 0.94
51 4 0.05
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.20
Consensus pattern (49 bp):
ATGAGAGGTCCCCGTAAGACCATGTCTGGGACATGGCGTTAGCACAGAG
Found at i:11768037 original size:50 final size:50
Alignment explanation
Indices: 11767939--11768040 Score: 150
Period size: 50 Copynumber: 2.0 Consensus size: 50
11767929 TGTTAGTATA
* * * * * *
11767939 GAGATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACC
1 GAGATCAGAGGTCCCCCGCAAGACCATATCTGGGACATGGCATGGGCACC
11767989 GAGATCAGAGGTCCCCCGCAAGACCATATCTGGGACATGGCATGGGCACC
1 GAGATCAGAGGTCCCCCGCAAGACCATATCTGGGACATGGCATGGGCACC
11768039 GA
1 GA
11768041 TATGAGAACT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.25, C:0.26, G:0.32, T:0.17
Consensus pattern (50 bp):
GAGATCAGAGGTCCCCCGCAAGACCATATCTGGGACATGGCATGGGCACC
Found at i:11768365 original size:20 final size:20
Alignment explanation
Indices: 11768340--11768389 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
11768330 TGAGTTATTT
11768340 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
11768360 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
*
11768380 AAGAAAGCAA
1 AAGTAAGCAA
11768390 AGACCATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.58, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:11777493 original size:32 final size:32
Alignment explanation
Indices: 11777456--11777520 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
11777446 GTTTACAAGG
11777456 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
1 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
11777488 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
1 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
11777520 T
1 T
11777521 GTCGTAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (32 bp):
TACGAGAAAAGATTTTAAAGTATTTTATTTCA
Found at i:11790615 original size:38 final size:38
Alignment explanation
Indices: 11790562--11790639 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
11790552 TATGTCAGCA
*
11790562 AGTAAAAGCTGAACATCAGGTGCCTTCTGGTTTGTTGT
1 AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
11790600 AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
1 AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
11790638 AG
1 AG
11790640 CCAGTGATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (38 bp):
AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
Found at i:11792990 original size:30 final size:30
Alignment explanation
Indices: 11792956--11793025 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
11792946 TGAGTCTCTT
11792956 GGTCGTGTGAGTCACACGACCTGGCCACAC
1 GGTCGTGTGAGTCACACGACCTGGCCACAC
*
11792986 GGTCGTGCGAGTCACACGACCTGGCCACAC
1 GGTCGTGTGAGTCACACGACCTGGCCACAC
*
11793016 GGCCGTGTGA
1 GGTCGTGTGA
11793026 CCCCTACAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (30 bp):
GGTCGTGTGAGTCACACGACCTGGCCACAC
Found at i:11794582 original size:20 final size:20
Alignment explanation
Indices: 11794557--11794595 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
11794547 CCTTGCGAAC
11794557 TCTGATTGAAGAAGTTTCAT
1 TCTGATTGAAGAAGTTTCAT
11794577 TCTGATTGAAGAAGTTTCA
1 TCTGATTGAAGAAGTTTCA
11794596 AGTGTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (20 bp):
TCTGATTGAAGAAGTTTCAT
Found at i:11800787 original size:39 final size:39
Alignment explanation
Indices: 11800744--11800923 Score: 261
Period size: 39 Copynumber: 4.6 Consensus size: 39
11800734 AACATGTTTT
* * * *
11800744 TGAGTATTGTGATATATGTTTGAATATTATGTGGTTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
11800783 TGAGTATTGTAATATATGCTTAAACGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
11800822 TGAGAATTATGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
11800861 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
11800900 TGTGTAATGTGATATATGTTTAAA
1 TGAGTATTGTGATATATGCTTAAA
11800924 AGTGAATTGA
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 126 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:11804226 original size:24 final size:24
Alignment explanation
Indices: 11804199--11804264 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 24
11804189 AATTTAAAGG
11804199 ATGTATAATGCTTTCCTTTAAATA
1 ATGTATAATGCTTTCCTTTAAATA
* *
11804223 ATG--TAATAGC--TCCTTTGAATG
1 ATGTATAAT-GCTTTCCTTTAAATA
*
11804244 ATGTATAATGTTTTCCTTTAA
1 ATGTATAATGCTTTCCTTTAA
11804265 TTGATGTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
21 12 0.36
22 5 0.15
23 6 0.18
24 10 0.30
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (24 bp):
ATGTATAATGCTTTCCTTTAAATA
Found at i:11804487 original size:9 final size:9
Alignment explanation
Indices: 11804459--11804504 Score: 65
Period size: 10 Copynumber: 4.9 Consensus size: 9
11804449 ATTTATTAAC
11804459 AAACACATT
1 AAACACATT
11804468 AAAACACATT
1 -AAACACATT
*
11804478 AAACATATT
1 AAACACATT
11804487 AAACACATTT
1 AAACACA-TT
11804497 AAACACAT
1 AAACACAT
11804505 ATTAGACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
9 15 0.45
10 18 0.55
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.24
Consensus pattern (9 bp):
AAACACATT
Found at i:11804487 original size:19 final size:19
Alignment explanation
Indices: 11804459--11804504 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
11804449 ATTTATTAAC
11804459 AAACACATTAAAACACA-TT
1 AAACACATT-AAACACATTT
*
11804478 AAACATATTAAACACATTT
1 AAACACATTAAACACATTT
11804497 AAACACAT
1 AAACACAT
11804505 ATTAGACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.24
Consensus pattern (19 bp):
AAACACATTAAACACATTT
Found at i:11804634 original size:19 final size:19
Alignment explanation
Indices: 11804607--11804645 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
11804597 TTATTCCAGC
11804607 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
11804626 AACTTAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
11804645 A
1 A
11804646 GTAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:11804670 original size:35 final size:35
Alignment explanation
Indices: 11804626--11804699 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
11804616 AACTAAGATG
* *
11804626 AACTTAATTAACTAAGATGAGTAATTTATTCCAGC
1 AACTCAATTAACTAAGATGAGTAATTTATTCCAAC
*
11804661 AACTCAATTAACTAAGATGAGTAATTTTTTCCAAC
1 AACTCAATTAACTAAGATGAGTAATTTATTCCAAC
11804696 AACT
1 AACT
11804700 AAACACTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (35 bp):
AACTCAATTAACTAAGATGAGTAATTTATTCCAAC
Found at i:11804806 original size:20 final size:21
Alignment explanation
Indices: 11804777--11804817 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
11804767 GAGCTTGAAG
*
11804777 AAGCTAAAATTGAGC-TCATT
1 AAGCTAAAATTAAGCTTCATT
*
11804797 AAGCTGAAATTAAGCTTCATT
1 AAGCTAAAATTAAGCTTCATT
11804818 TTTCACTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (21 bp):
AAGCTAAAATTAAGCTTCATT
Found at i:11813222 original size:25 final size:25
Alignment explanation
Indices: 11813180--11813233 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
11813170 TTTTCTCAAA
*
11813180 AATTTAATTAATATAAAATATTA-AT
1 AATTTAATAAATATAAAA-ATTAGAT
11813205 AATTTAATAAAT-TGAAAAATTAGAT
1 AATTTAATAAATAT-AAAAATTAGAT
11813230 AATT
1 AATT
11813234 AAATTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.41
Consensus pattern (25 bp):
AATTTAATAAATATAAAAATTAGAT
Found at i:11813271 original size:25 final size:26
Alignment explanation
Indices: 11813237--11813297 Score: 70
Period size: 30 Copynumber: 2.2 Consensus size: 26
11813227 GATAATTAAA
11813237 TTAAAATTTAG-GAGCAACCAAATTT
1 TTAAAATTTAGAGAGCAACCAAATTT
*
11813262 TTAATATTTAGAAAAAGAGCAACCAAATTT
1 TTAAAATTTAG----AGAGCAACCAAATTT
11813292 TTAAAA
1 TTAAAA
11813298 ATAATTCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 10 0.34
30 19 0.66
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (26 bp):
TTAAAATTTAGAGAGCAACCAAATTT
Found at i:11817703 original size:49 final size:49
Alignment explanation
Indices: 11817650--11817920 Score: 250
Period size: 49 Copynumber: 5.5 Consensus size: 49
11817640 TGTCCCAGAC
*
11817650 ATGGTCTTATATGGGATGTT-TCATGTACTGCCAATGTCATATCTCAAAT
1 ATGGTCTTACATGGGA-GTTCTCATGTACTGCCAATGTCATATCTCAAAT
* * * * * * *
11817699 ATGGTCTTACATGGGAGTTCTCATAT-CGGTTCTC-ATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGAGTTCTCATGTAC--TGC-CAATGTCATATCTCAAAT
*
11817749 ATGGTCTTATATGGGATGTT-TCATGTACTGCCAATGTCATATCTCAAAT
1 ATGGTCTTACATGGGA-GTTCTCATGTACTGCCAATGTCATATCTCAAAT
* * * * * * *
11817798 ATGGTCTTACATGGGAGTTCTCATAT-CGGTTCTC-ATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGAGTTCTCATGTAC--TGC-CAATGTCATATCTCAAAT
* *
11817848 ATGGTCTTATATGGGATGTT-TCATGTACTGCGAATGTCATATCTCAAAT
1 ATGGTCTTACATGGGA-GTTCTCATGTACTGCCAATGTCATATCTCAAAT
11817897 ATGGTCTTACATGGGAGTTCTCAT
1 ATGGTCTTACATGGGAGTTCTCAT
11817921 ATCGGTTCCC
Statistics
Matches: 173, Mismatches: 34, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
48 12 0.07
49 85 0.49
50 66 0.38
51 10 0.06
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.36
Consensus pattern (49 bp):
ATGGTCTTACATGGGAGTTCTCATGTACTGCCAATGTCATATCTCAAAT
Found at i:11817757 original size:50 final size:49
Alignment explanation
Indices: 11817636--11818118 Score: 311
Period size: 50 Copynumber: 9.6 Consensus size: 49
11817626 ACATGCCAAA
* *
11817636 GCCATGTCCCAGACATGGTCTTATATGGGATGTT-TCATGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCC-AT
* * * * * *
11817685 GTCATATCTCAAATATGGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGC-CAT
* *
11817735 GCCATGTCCCAGACATGGTCTTATATGGGATGTT-TCATGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCC-AT
* * * * * *
11817784 GTCATATCTCAAATATGGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGC-CAT
* * *
11817834 GCCATGTCCCAGACATGGTCTTATATGGGATGTT-TCATGTAC--TGCGAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTGC-CAT
* * * * * *
11817883 GTCATATCTCAAATATGGTCTTACATGGGAGTTCTCATATCGGTTCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG-TGCCAT
* *** ** * *
11817933 GCCATGTCCCAGACATGGACTTATGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCC-AT
** * * * *
11817983 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCAGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCC-AT
* * * *
11818033 ACCATGTCCCAGACATGGTCTTACATGGGACCTGTCATGATCTCAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GT-TC-TCATATC--GG-TGCC-AT
11818089 G-CATTGTCCCAGACATGGTCTTACATGGGA
1 GCCA-TGTCCCAGACATGGTCTTACATGGGA
11818119 TCTCTTTGCC
Statistics
Matches: 339, Mismatches: 70, Indels: 43
0.75 0.15 0.10
Matches are distributed among these distances:
48 13 0.04
49 98 0.29
50 173 0.51
51 13 0.04
52 2 0.01
53 5 0.01
55 3 0.01
56 32 0.09
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAT
Found at i:11817807 original size:99 final size:99
Alignment explanation
Indices: 11817636--11817956 Score: 615
Period size: 99 Copynumber: 3.2 Consensus size: 99
11817626 ACATGCCAAA
11817636 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
1 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
11817701 GGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
11817735 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
1 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
11817800 GGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
*
11817834 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCGAATGTCATATCTCAAATAT
1 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
*
11817899 GGTCTTACATGGGAGTTCTCATATCGGTTCCCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
*
11817933 GCCATGTCCCAGACATGGACTTAT
1 GCCATGTCCCAGACATGGTCTTAT
11817957 GGGGGACCTC
Statistics
Matches: 219, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 219 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (99 bp):
GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
GGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
Found at i:11821301 original size:56 final size:56
Alignment explanation
Indices: 11821215--11821446 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
11821205 ACAAGGGATG
11821215 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
11821271 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
11821327 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
11821383 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
11821439 ATGGGCAA
1 ATGGGCAA
11821447 TAAACTAATA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:11822053 original size:40 final size:39
Alignment explanation
Indices: 11821964--11822126 Score: 147
Period size: 39 Copynumber: 4.1 Consensus size: 39
11821954 TTGAATGATG
* *
11821964 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTATA
*
11822003 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTATA
* *
11822042 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATA
* * **
11822082 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATA-CTATA
11822122 TCCGG
1 TCCGG
11822127 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 12, Indels: 15
0.79 0.09 0.11
Matches are distributed among these distances:
39 54 0.52
40 41 0.39
41 8 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATA
Found at i:11822059 original size:39 final size:41
Alignment explanation
Indices: 11821964--11822107 Score: 160
Period size: 39 Copynumber: 3.6 Consensus size: 41
11821954 TTGAATGATG
*
11821964 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
11822003 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
11822043 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
11822082 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
11822108 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
38 2 0.02
39 50 0.55
40 27 0.30
41 11 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:11822126 original size:79 final size:79
Alignment explanation
Indices: 11821964--11822113 Score: 180
Period size: 79 Copynumber: 1.9 Consensus size: 79
11821954 TTGAATGATG
*
11821964 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATAACCGGACTAAGATCCGAAGGCATTTG
**
11822029 TGCGAGATACTAAT
66 AACGAGATACTAAT
* * * * *
11822043 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATAACCGGACTAAGAT-CCGAAGGCAT
11822105 TTGAACGAG
63 TTGAACGAG
11822114 TAGCTATATC
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 10 0.17
79 44 0.73
80 6 0.10
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATAACCGGACTAAGATCCGAAGGCATTTG
AACGAGATACTAAT
Found at i:11828267 original size:150 final size:154
Alignment explanation
Indices: 11827994--11828341 Score: 388
Period size: 150 Copynumber: 2.3 Consensus size: 154
11827984 TGATAATAAC
* * ** * * * *
11827994 ATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATGTTTC-ATGTAC--TGCCAATGTCAT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGA--CACGGTGCCAACGCCAT
* * * ** * **
11828056 ATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCACACATGGTC
64 GTCCCAGGTATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCACACATGGTC
11828121 TTACGA-GGGACCTCTC-ATCTC-A-G
129 TTAC-ATGGGACCTCTCAATCTCAAGG
*
11828144 -TGCCAACGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCGACACGGTGCCAACGCCATGT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGACACGGTGCCAACGCCATGT
* * * *
11828208 CCCAGGTATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACACCATGTGCGAGACATGGTCTT
66 CCCAGGTATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCACACATGGTCTT
11828273 ACATGGGACCTCTCATGATCTCAAGG
131 ACATGGGACCTCTCA--ATCTCAAGG
* *
11828299 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
11828342 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
148 2 0.01
149 38 0.23
150 78 0.48
153 5 0.03
154 1 0.01
155 1 0.01
156 39 0.24
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (154 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGACACGGTGCCAACGCCATGT
CCCAGGTATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCACACATGGTCTT
ACATGGGACCTCTCAATCTCAAGG
Found at i:11828321 original size:56 final size:50
Alignment explanation
Indices: 11827995--11828341 Score: 342
Period size: 50 Copynumber: 6.8 Consensus size: 50
11827985 GATAATAACA
* * ** * *
11827995 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * * ** *
11828044 TGCCAATGTCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
11828094 TGCCCATGCCATGTCCCACACATGGTCTTACGA-GGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
* *
11828144 TGCCAACGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCGA-CACGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-ATCTCGG
**
11828194 TGCCAACGCCATGTCCCAGGTATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
11828244 TGCCAACACCATGTGCGAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
* *
11828299 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
11828342 TTACCCAAAT
Statistics
Matches: 248, Mismatches: 38, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
48 1 0.00
49 39 0.16
50 162 0.65
51 2 0.01
53 5 0.02
55 2 0.01
56 37 0.15
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:11828712 original size:30 final size:30
Alignment explanation
Indices: 11828678--11828735 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
11828668 CCTCGACTCT
*
11828678 AACTTTGGCAAAATTACAATTTTGCCCTTA
1 AACTTTGACAAAATTACAATTTTGCCCTTA
* * *
11828708 AACTTTTACATAATTACACTTTTGCCCT
1 AACTTTGACAAAATTACAATTTTGCCCT
11828736 AAAGCTCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGACAAAATTACAATTTTGCCCTTA
Found at i:11838955 original size:23 final size:23
Alignment explanation
Indices: 11838927--11838987 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
11838917 CTGTGTTATA
11838927 ATGTTCATGTTTTGGTTTCTGTT
1 ATGTTCATGTTTTGGTTTCTGTT
11838950 ATGTTCATGTTTTGGTTTCTGTT
1 ATGTTCATGTTTTGGTTTCTGTT
*
11838973 AAGTTCATGTTTTGG
1 ATGTTCATGTTTTGG
11838988 ATCATGTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.11, C:0.08, G:0.23, T:0.57
Consensus pattern (23 bp):
ATGTTCATGTTTTGGTTTCTGTT
Found at i:11839000 original size:35 final size:35
Alignment explanation
Indices: 11838954--11839020 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
11838944 TCTGTTATGT
11838954 TCATGTTTTGGTTTCTGTTAAGTTCATGTTTTGGA
1 TCATGTTTTGGTTTCTGTTAAGTTCATGTTTTGGA
*
11838989 TCATGTTTTGGTTTCTGTTAATTTCATGTTTT
1 TCATGTTTTGGTTTCTGTTAAGTTCATGTTTT
11839021 TCTGTATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.13, C:0.09, G:0.19, T:0.58
Consensus pattern (35 bp):
TCATGTTTTGGTTTCTGTTAAGTTCATGTTTTGGA
Found at i:11839007 original size:12 final size:12
Alignment explanation
Indices: 11838929--11839001 Score: 64
Period size: 12 Copynumber: 6.2 Consensus size: 12
11838919 GTGTTATAAT
11838929 GTTCATGTTTTG
1 GTTCATGTTTTG
*
11838941 GTTTC-TGTTAT-
1 G-TTCATGTTTTG
11838952 GTTCATGTTTTG
1 GTTCATGTTTTG
**
11838964 GTTTC-TG-TTAA
1 G-TTCATGTTTTG
11838975 GTTCATGTTTTG
1 GTTCATGTTTTG
*
11838987 GATCATGTTTTG
1 GTTCATGTTTTG
11838999 GTT
1 GTT
11839002 TCTGTTAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
10 6 0.13
11 11 0.23
12 24 0.51
13 6 0.13
ACGTcount: A:0.11, C:0.08, G:0.23, T:0.58
Consensus pattern (12 bp):
GTTCATGTTTTG
Found at i:11839975 original size:11 final size:11
Alignment explanation
Indices: 11839959--11839985 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
11839949 AAATTATATT
11839959 ATATTTTTTTA
1 ATATTTTTTTA
11839970 ATATTTTTTTA
1 ATATTTTTTTA
11839981 ATATT
1 ATATT
11839986 CCAATTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
ATATTTTTTTA
Found at i:11840107 original size:16 final size:16
Alignment explanation
Indices: 11840078--11840116 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
11840068 TTAAATTAAA
11840078 TTAA-ATTTTCTATTT
1 TTAATATTTTCTATTT
*
11840093 TTAATATTTTTTATTT
1 TTAATATTTTCTATTT
*
11840109 TTCATATT
1 TTAATATT
11840117 CCAATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (16 bp):
TTAATATTTTCTATTT
Found at i:11840230 original size:16 final size:16
Alignment explanation
Indices: 11840211--11840243 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11840201 TATTATATTA
11840211 TTTTTATTTTTAATAT
1 TTTTTATTTTTAATAT
11840227 TTTTTATTTTTAATAT
1 TTTTTATTTTTAATAT
11840243 T
1 T
11840244 CCAATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTTAATAT
Found at i:11840270 original size:127 final size:127
Alignment explanation
Indices: 11839845--11840474 Score: 977
Period size: 131 Copynumber: 5.0 Consensus size: 127
11839835 TAAATTTTGG
* * * *
11839845 ATATTTTTTATATATAAGATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
* * * *
11839910 TGCATAAAACTAATTAAATTATATATTTACAAATTAATTAAATTATATTA-TATT-TTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
* * *
11839970 ATA----TT-TTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAATTAAAAATAATTAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTG-TTAAAATAAAAATAATTAA
* *
11840030 ATGCATAAAACTAATTAAATTATGTATTAACAAATTAATTAAATTAAATTAAATTTTCTATTTTT
65 ATGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATT--ATTTT-TATTTTT
11840095 A
127 A
* *
11840096 ATATTTTTTATTTTTCATATTCCAATTTATTAAATAATTCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
11840161 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
11840223 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
*
11840288 TGCATAAAACTAATTAAATTATGTATTAAAAAATTAATTATATTATATTATATTTTTTTATTTTT
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATA-T-TA--TTTTTATTTTT
11840353 A
127 A
*
11840354 ATATTTTTTATTTTTAATATTCTAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
*
11840419 TGCATAAAACTAATTAAATTATGTATTAAAAAATTAATTATATTATATTATTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTA
11840475 ATATTCCAAT
Statistics
Matches: 468, Mismatches: 22, Indels: 28
0.90 0.04 0.05
Matches are distributed among these distances:
120 30 0.06
121 66 0.14
123 1 0.00
124 2 0.00
125 4 0.01
126 9 0.02
127 123 0.26
128 6 0.01
129 4 0.01
130 68 0.15
131 155 0.33
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (127 bp):
ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
Found at i:11840362 original size:16 final size:16
Alignment explanation
Indices: 11840341--11840374 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
11840331 TATATTATAT
11840341 TTTTTTATTTTTAATA
1 TTTTTTATTTTTAATA
11840357 TTTTTTATTTTTAATA
1 TTTTTTATTTTTAATA
11840373 TT
1 TT
11840375 CTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTATTTTTAATA
Found at i:11840400 original size:258 final size:253
Alignment explanation
Indices: 11839845--11840474 Score: 1005
Period size: 258 Copynumber: 2.5 Consensus size: 253
11839835 TAAATTTTGG
* * * *
11839845 ATATTTTTTATATATAAGATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
* * * *
11839910 TGCATAAAACTAATTAAATTATATATTTACAAATTAATTAAATTATATTA-TATT-TTTTTAATA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
*
11839973 TTTTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAATTAAAAATAATTAAATGCATAA
131 TTTTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAAATAAAAATAATTAAATGCATAA
*
11840038 AACTAATTAAATTATGTATTAACAAATTAATTAAATTAAATTAAATTTTCTATTTTTA
196 AACTAATTAAATTATGTATTAAAAAATTAATTAAATTAAATTAAATTTTCTATTTTTA
* *
11840096 ATATTTTTTATTTTTCATATTCCAATTTATTAAATAATTCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
11840161 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
* *
11840226 TTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTG-TTAAAATAAAAATAATTAAATG
131 ----TT-TTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAAATAAAAATAATTAAATG
* * * *
11840290 CATAAAACTAATTAAATTATGTATTAAAAAATTAATTATATTATATTATATTTTTTTATTTTTA
191 CATAAAACTAATTAAATTATGTATTAAAAAATTAATTAAATTAAATTA-AATTTTCTATTTTTA
*
11840354 ATATTTTTTATTTTTAATATTCTAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
*
11840419 TGCATAAAACTAATTAAATTATGTATTAAAAAATTAATTATATTATATTATTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTA
11840475 ATATTCCAAT
Statistics
Matches: 349, Mismatches: 22, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
251 106 0.30
252 3 0.01
253 9 0.03
257 67 0.19
258 164 0.47
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (253 bp):
ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
TTTTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAAATAAAAATAATTAAATGCATAA
AACTAATTAAATTATGTATTAAAAAATTAATTAAATTAAATTAAATTTTCTATTTTTA
Found at i:11842138 original size:30 final size:30
Alignment explanation
Indices: 11842104--11842175 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
11842094 TCTAGCATCC
* *
11842104 CCATTCAGCTCCCTAAATACATGCATGCCT
1 CCATTCAGCTCCCTAAACACATGCATGCAT
* *
11842134 CCATTCAGCTCCTTAAACACATTCATGCAT
1 CCATTCAGCTCCCTAAACACATGCATGCAT
**
11842164 TAATTCAGCTCC
1 CCATTCAGCTCC
11842176 ATATGCACAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.28, C:0.35, G:0.08, T:0.29
Consensus pattern (30 bp):
CCATTCAGCTCCCTAAACACATGCATGCAT
Found at i:11844330 original size:49 final size:49
Alignment explanation
Indices: 11844274--11844378 Score: 165
Period size: 49 Copynumber: 2.1 Consensus size: 49
11844264 TCATGTTTTA
* * * * *
11844274 TAATTTTATACAGTGTTGAGCTTTTGTTTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
11844323 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
11844372 TAATTTT
1 TAATTTT
11844379 TTTTCTTAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.51
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:11845888 original size:120 final size:120
Alignment explanation
Indices: 11845757--11846067 Score: 563
Period size: 120 Copynumber: 2.6 Consensus size: 120
11845747 GATTATTTCA
*
11845757 TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATT
1 TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
11845822 CATATAAGAATATTTAATACT-AAGAATTTTATTAAATTATATATTTTTATTAAAT
66 CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATA-TTTTATTAAAT
*
11845877 TATATTTAATAATAATTATTTTCAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
1 TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
*
11845942 CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATATTTTGTTAAAT
66 CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATATTTTATTAAAT
11845997 TATATTTAAT-ATCAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAAT
1 TATATTTAATAAT-AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAAT
11846061 TCATATA
65 TCATATA
11846068 TTTTATAAAC
Statistics
Matches: 185, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
119 2 0.01
120 161 0.87
121 22 0.12
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (120 bp):
TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATATTTTATTAAAT
Found at i:11846003 original size:15 final size:17
Alignment explanation
Indices: 11845968--11846001 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
11845958 ATACTAAAGA
11845968 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
11845985 ATTTTGTTAAATTATAT
1 ATTTTATTAAATTATAT
11846002 TTAATATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:11846068 original size:41 final size:39
Alignment explanation
Indices: 11845903--11846074 Score: 104
Period size: 41 Copynumber: 4.3 Consensus size: 39
11845893 TATTTTCAAT
11845903 TATATTTTATAGTATTATATATTATGATTTTAATAAATTCA
1 TATATTTTATA-TATTATATATTATGATTTTAATAAATT-A
*** * * *
11845944 TATA-AGAATAT-TTA-ATACTAAAGAATTTTATTAAATTA
1 TATATTTTATATATTATATA-TTATG-ATTTTAATAAATTA
* * * * *
11845982 TATATTTTGTTAAATTATATTTAATATCAATTATT-TTAAA-T-
1 TATATTTT-ATATATTATA--TATTAT-GATT-TTAATAAATTA
11846023 TATATTTTATAGTATTATATATTATGATTTTAATAAATTCA
1 TATATTTTATA-TATTATATATTATGATTTTAATAAATT-A
11846064 TATATTTTATA
1 TATATTTTATA
11846075 AACATGCACT
Statistics
Matches: 96, Mismatches: 20, Indels: 30
0.66 0.14 0.21
Matches are distributed among these distances:
37 5 0.05
38 18 0.19
39 19 0.20
40 7 0.07
41 32 0.33
42 2 0.02
43 9 0.09
44 4 0.04
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (39 bp):
TATATTTTATATATTATATATTATGATTTTAATAAATTA
Found at i:11846351 original size:46 final size:44
Alignment explanation
Indices: 11846260--11846367 Score: 126
Period size: 46 Copynumber: 2.4 Consensus size: 44
11846250 ATAACAACAT
* * **
11846260 CATTCCATTCAACCAAATACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACAAAAGAATACTATTACACCTCTATTC
*
11846304 CATTCCATTCAACCAAACAAAAGGATTACCTATTACACCTCTATTC
1 CATTCCATTCAACCAAACAAAA-GAATA-CTATTACACCTCTATTC
* * *
11846350 CATTACAGTGAACCAAAC
1 CATTCCATTCAACCAAAC
11846368 GTACCCTTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 20 0.37
45 4 0.07
46 30 0.56
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.28
Consensus pattern (44 bp):
CATTCCATTCAACCAAACAAAAGAATACTATTACACCTCTATTC
Found at i:11858447 original size:17 final size:17
Alignment explanation
Indices: 11858425--11858461 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
11858415 GTTAGTGCAC
*
11858425 ATTGTCATTGCATTTCA
1 ATTGTCATTACATTTCA
*
11858442 ATTGTCATTACATTTTA
1 ATTGTCATTACATTTCA
11858459 ATT
1 ATT
11858462 TTAGTGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (17 bp):
ATTGTCATTACATTTCA
Found at i:11862247 original size:35 final size:35
Alignment explanation
Indices: 11862208--11862275 Score: 111
Period size: 35 Copynumber: 1.9 Consensus size: 35
11862198 ACAAAGCCAT
*
11862208 CATTACCTTATTG-ATGTAAGTGTGTTTTCGTCCAA
1 CATTACCTT-GTGCATGTAAGTGTGTTTTCGTCCAA
11862243 CATTACCTTGTGCATGTAAGTGTGTTTTCGTCC
1 CATTACCTTGTGCATGTAAGTGTGTTTTCGTCC
11862276 CATTTTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 2 0.06
35 29 0.94
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (35 bp):
CATTACCTTGTGCATGTAAGTGTGTTTTCGTCCAA
Found at i:11862957 original size:29 final size:29
Alignment explanation
Indices: 11862921--11863011 Score: 155
Period size: 29 Copynumber: 3.1 Consensus size: 29
11862911 TTATTGACAC
*
11862921 CCATCGAATATGAAAAGAGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
11862950 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
**
11862979 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
11863008 CCAT
1 CCAT
11863012 TGTTTAGCAC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.20
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGACGA
Found at i:11866908 original size:51 final size:51
Alignment explanation
Indices: 11866788--11866972 Score: 151
Period size: 51 Copynumber: 3.6 Consensus size: 51
11866778 AAAGTGACGG
* * * * * * *
11866788 TCACGTGTGTAGTACTATGTGTAGGTTACTACGTGTACCGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GA
* * *
11866838 TCGCATTTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GA
** ** * * * * *
11866889 TCATGTGTGTAGTACTATGTGCAACCTACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
*
11866940 TCACATGTGTAGTACTATGTGTAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
11866973 TGAACCGAAC
Statistics
Matches: 104, Mismatches: 28, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
50 35 0.34
51 67 0.64
52 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
Found at i:11867032 original size:45 final size:45
Alignment explanation
Indices: 11866976--11867070 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
11866966 TACTATGTGA
* * *
11866976 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
* * *
11867021 ACCGGACATCATTGATTAATAAGGTGGTTGTTTTGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
11867066 ACCGA
1 ACCGA
11867071 GTATCTGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:11871717 original size:25 final size:25
Alignment explanation
Indices: 11871688--11871807 Score: 118
Period size: 25 Copynumber: 4.8 Consensus size: 25
11871678 GGTTACCAAT
*
11871688 TTCAGCTCGTAA-AGACTTACCGTTA
1 TTCAGCTCGGAAGAG-CTTACCGTTA
* *
11871713 TTCAGCTCGTATGAGCTTACCGTTA
1 TTCAGCTCGGAAGAGCTTACCGTTA
* * * *
11871738 TTTAGCTTGGAGGAGCTTACCATTA
1 TTCAGCTCGGAAGAGCTTACCGTTA
* *
11871763 TTTAGCTCGGAAGAGCTTACCGTTC
1 TTCAGCTCGGAAGAGCTTACCGTTA
*
11871788 TTCAGC-CCGAAGTAGCTTAC
1 TTCAGCTCGGAAG-AGCTTAC
11871808 AGTGTCCCTA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
24 5 0.06
25 74 0.91
26 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (25 bp):
TTCAGCTCGGAAGAGCTTACCGTTA
Found at i:11875105 original size:43 final size:43
Alignment explanation
Indices: 11875054--11875199 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 43
11875044 AGTGATACTG
*
11875054 GGAATCAGCACATAGCAACTCCTTTCACAATCAAAGATATGGT
1 GGAATCAGCACATAGCAACTCCTTTCACAATCAAAGATACGGT
* * * * * **
11875097 GGAATCAGCACTTAGCAAC-CATATTTATATTCAGTGATACGG-
1 GGAATCAGCACATAGCAACTCCT-TTCACAATCAAAGATACGGT
* *
11875139 GGAATCAGCA-ATAGCAA-TCCCTTTCACAATCAAATATACAGT
1 GGAATCAGCACATAGCAACT-CCTTTCACAATCAAAGATACGGT
*
11875181 GGAATCAGCACTTAGCAAC
1 GGAATCAGCACATAGCAAC
11875200 CACTTTTAGA
Statistics
Matches: 79, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
41 18 0.23
42 24 0.30
43 37 0.47
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (43 bp):
GGAATCAGCACATAGCAACTCCTTTCACAATCAAAGATACGGT
Found at i:11875153 original size:84 final size:84
Alignment explanation
Indices: 11875009--11875245 Score: 284
Period size: 84 Copynumber: 2.8 Consensus size: 84
11874999 ATCCGTTACT
* * *
11875009 CGGTGGATTCAGCACTTAGCAACCACCTTAAATTCAGTGATACTGGGAATCAGCACATAGCAA-C
1 CGGTGGAATCAGCACTTAGCAACCAACTTAAATTCAGTGATACGGGGAATCAGCACATAGCAATC
11875073 TCCTTTCACAATCAAAGATA
66 -CCTTTCACAATCAAAGATA
* * *
11875093 TGGTGGAATCAGCACTTAGCAACCATATTTATATTCAGTGATACGGGGAATCAGCA-ATAGCAAT
1 CGGTGGAATCAGCACTTAGCAACCA-ACTTAAATTCAGTGATACGGGGAATCAGCACATAGCAAT
*
11875157 CCCTTTCACAATCAAATATA
65 CCCTTTCACAATCAAAGATA
* * * * * *
11875177 CAGTGGAATCAGCACTTAGCAACC-ACTTTTAGAA-TCAATAATTCGGGGAATCAACACTTAGCA
1 CGGTGGAATCAGCACTTAGCAACCAAC--TTA-AATTCAGTGATACGGGGAATCAGCACATAGCA
11875240 ATCCCT
63 ATCCCT
11875246 CGGGGAATCT
Statistics
Matches: 131, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
82 1 0.01
84 91 0.69
85 39 0.30
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCAACTTAAATTCAGTGATACGGGGAATCAGCACATAGCAATC
CCTTTCACAATCAAAGATA
Found at i:11875213 original size:43 final size:42
Alignment explanation
Indices: 11875011--11875240 Score: 170
Period size: 42 Copynumber: 5.5 Consensus size: 42
11875001 CCGTTACTCG
* * *
11875011 GTGGATTCAGCACTTAGCAACCAC-CTTA-AATTCAGTGATAC
1 GTGGAATCAGCACTTAGCAACCACTTTTACAA-TCAATGATAC
* * * *
11875052 -TGGGAATCAGCACATAGCAACTC-CTTTCACAATCAAAGATATG
1 GT-GGAATCAGCACTTAGCAAC-CACTTTTACAATCAATGATA-C
* * *
11875095 GTGGAATCAGCACTTAGCAACCA-TATTTATATTCAGTGATAC
1 GTGGAATCAGCACTTAGCAACCACT-TTTACAATCAATGATAC
* * *
11875137 GGGGAATCAGCA-ATAGCAATCC-CTTTCACAATCAAAT-ATAC
1 GTGGAATCAGCACTTAGCAA-CCACTTTTACAATC-AATGATAC
* * *
11875178 AGTGGAATCAGCACTTAGCAACCACTTTTAGAATCAATAATTC
1 -GTGGAATCAGCACTTAGCAACCACTTTTACAATCAATGATAC
* *
11875221 GGGGAATCAACACTTAGCAA
1 GTGGAATCAGCACTTAGCAA
11875241 TCCCTCGGGG
Statistics
Matches: 147, Mismatches: 27, Indels: 29
0.72 0.13 0.14
Matches are distributed among these distances:
40 1 0.01
41 34 0.23
42 62 0.42
43 49 0.33
44 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (42 bp):
GTGGAATCAGCACTTAGCAACCACTTTTACAATCAATGATAC
Found at i:11899547 original size:136 final size:135
Alignment explanation
Indices: 11899268--11899685 Score: 642
Period size: 136 Copynumber: 3.1 Consensus size: 135
11899258 TAGAAAAATG
* *
11899268 AATTATGTTCTTGCAAAAGAATATTAA-TTTCTGTCTTTTATATTTTGACCGAAATTAATTAATA
1 AATTATATTCTTTCAAAAGAATATTAATTTTCTGTCTTTTATATTTTGACCGAAATTAATTAATA
11899332 TAACTATTTATATTAATAAATTCGGTACAATATATACAATTAATATTTTGTATGAATCAAATTCA
66 TAACTATTTATATTAATAAATTCGGTA-AATATATACAATTAATATTTTGTATGAATCAAATTCA
11899397 TATATT
130 TATATT
* *
11899403 AATTATATTCTTTCAAAA-AATATTAATTTTCGTGTTTTTTATATTTTGACCGAAATTATTTAAT
1 AATTATATTCTTTCAAAAGAATATTAATTTTC-TGTCTTTTATATTTTGACCGAAATTAATTAAT
*
11899467 ATAACTATTTATATTAATAAATTCGGTAAACTATATACAATTAATATTTTGTACGAATCAAATTC
65 ATAACTATTTATATTAATAAATTCGGTAAA-TATATACAATTAATATTTTGTATGAATCAAATTC
11899532 ATATATT
129 ATATATT
* * ***
11899539 AATTATATTCTTTCCAAAAGAACATTAATTATCATGTCTTTTATATTTTGTTAGAAATTAATTAA
1 AATTATATTCTTT-CAAAAGAATATTAATTTTC-TGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
11899604 TATAATTGTTTATATTAATAAATACAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
64 TATAACTATTTATATTAATAAATTCGGT-AAATATATACAATTAATATTTTGTATGAATCAAATT
11899669 CATATATT
128 CATATATT
11899677 AATTATATT
1 AATTATATT
11899686 TATGTTCTCT
Statistics
Matches: 259, Mismatches: 18, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
134 8 0.03
135 22 0.08
136 111 0.43
137 5 0.02
138 110 0.42
139 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.45
Consensus pattern (135 bp):
AATTATATTCTTTCAAAAGAATATTAATTTTCTGTCTTTTATATTTTGACCGAAATTAATTAATA
TAACTATTTATATTAATAAATTCGGTAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATT
Found at i:11899769 original size:17 final size:17
Alignment explanation
Indices: 11899747--11899779 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11899737 TCAACTATCA
11899747 AATTAAATTAATTCATC
1 AATTAAATTAATTCATC
*
11899764 AATTAATTTAATTCAT
1 AATTAAATTAATTCAT
11899780 GTGACAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTAAATTAATTCATC
Found at i:11910384 original size:72 final size:72
Alignment explanation
Indices: 11910267--11910479 Score: 408
Period size: 72 Copynumber: 3.0 Consensus size: 72
11910257 GATGAATCTA
11910267 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATATTCAGGTTCTTGTG
1 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATATTCAGGTTCTTGTG
11910332 AGACCGG
66 AGACCGG
11910339 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATATTCAGGTTCTTGTG
1 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATATTCAGGTTCTTGTG
11910404 AGACCGG
66 AGACCGG
* *
11910411 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATACTCAGGTTCTTGTA
1 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATATTCAGGTTCTTGTG
11910476 AGAC
66 AGAC
11910480 AGGTCCAGAA
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 139 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (72 bp):
TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATATTCAGGTTCTTGTG
AGACCGG
Found at i:11913597 original size:12 final size:12
Alignment explanation
Indices: 11913580--11913604 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11913570 CACGCCCATA
11913580 TGCTAGGTCGTG
1 TGCTAGGTCGTG
11913592 TGCTAGGTCGTG
1 TGCTAGGTCGTG
11913604 T
1 T
11913605 AACAACTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.40, T:0.36
Consensus pattern (12 bp):
TGCTAGGTCGTG
Found at i:11914489 original size:15 final size:16
Alignment explanation
Indices: 11914460--11914489 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11914450 CAAACATGCT
11914460 TTAACACATTATCAAA
1 TTAACACATTATCAAA
11914476 TTAACACA-TATCAA
1 TTAACACATTATCAA
11914490 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:11917739 original size:325 final size:325
Alignment explanation
Indices: 11917149--11918452 Score: 2527
Period size: 325 Copynumber: 4.0 Consensus size: 325
11917139 CAAATTCTCT
11917149 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
11917214 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
66 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
11917279 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
131 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
11917344 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
196 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
11917409 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
261 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
11917474 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
11917539 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
66 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
11917604 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
131 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
11917669 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
196 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
11917734 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
261 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
11917799 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
11917864 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
66 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
11917929 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
131 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
11917994 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
196 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
11918059 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
261 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
11918124 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
* *
11918189 CTTTAACTTAATACACCCCAGTCCCCATGTTTAACATCCTAGCAGATGACCCCGTCTTTAATGTC
66 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
* * * *
11918254 CCATCGGACTTTCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATTAGACTACT
131 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
* *
11918319 TGAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGAC
196 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
*
11918384 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATTTCATGACGTC
261 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
11918449 TTTC
1 TTTC
11918453 AGCTATGGTT
Statistics
Matches: 970, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
325 970 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (325 bp):
TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
Found at i:11918496 original size:45 final size:45
Alignment explanation
Indices: 11918447--11918560 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 45
11918437 TTTCATGACG
* * * **
11918447 TCTTTCAGCTATGGTTTTACTCATTTATATCATGACGTTGTAGCA
1 TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
* * *
11918492 TCTTTCAACTATGGTCTTACTCATTTATAGCGTGATGTCATAGCG
1 TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
11918537 TCTTTCAACTATGGTCTTACTCAT
1 TCTTTCAACTATGGTCTTACTCAT
11918561 CTGTAGGCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (45 bp):
TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
Found at i:11921648 original size:43 final size:40
Alignment explanation
Indices: 11921570--11921654 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 40
11921560 GGAGTGACTT
*
11921570 AAGGGGAAGAAAAGGAAGGTGGGGGAACAATGGGAGTAAA
1 AAGGGGAAGAAAAGGAAGGTGGGGGAACAATGGGAGCAAA
*
11921610 AAGGGGAAGAAGAAAGGAAGGTGGAGAGGAATAA-GGGAGCAAA
1 AAGGGGAAG-A-AAAGGAAGGTGG-G-GGAACAATGGGAGCAAA
11921653 AA
1 AA
11921655 ATATTTCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
40 9 0.23
41 1 0.03
42 12 0.31
43 11 0.28
44 6 0.15
ACGTcount: A:0.48, C:0.02, G:0.44, T:0.06
Consensus pattern (40 bp):
AAGGGGAAGAAAAGGAAGGTGGGGGAACAATGGGAGCAAA
Found at i:11923729 original size:13 final size:14
Alignment explanation
Indices: 11923701--11923730 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
11923691 GTTAAATTGG
11923701 AAAGATGATAAAAT
1 AAAGATGATAAAAT
11923715 AAAGATGAT-AAAT
1 AAAGATGATAAAAT
11923728 AAA
1 AAA
11923731 TTAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (14 bp):
AAAGATGATAAAAT
Found at i:11924635 original size:25 final size:25
Alignment explanation
Indices: 11924601--11924813 Score: 175
Period size: 25 Copynumber: 8.6 Consensus size: 25
11924591 CACACCACAA
* *
11924601 CTCTTATGAGCGTCCCGATATTTGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
11924626 CTCTCATGAGCTTCCCGTTATTTGG
1 CTCTCATGAGCTTCCCGATATTTGG
* * *
11924651 CTCCCACGAGCTTCCCGATAATTGG
1 CTCTCATGAGCTTCCCGATATTTGG
* * * *
11924676 CTTTCATGAGCTTTCTGAT-TAATGG
1 CTCTCATGAGCTTCCCGATAT-TTGG
** *
11924701 CTCTCCGGAGCTTTCCGATA-TTGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
11924725 CTCAT-ATGAGCTTCCCGATATTTGA
1 CTC-TCATGAGCTTCCCGATATTTGG
* *
11924750 CTCTCTTGAGCTTCTC-AT-TTATGG
1 CTCTCATGAGCTTCCCGATATT-TGG
* * **
11924774 CTCTTATGAGCTTCCCGTTACATGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
11924799 CTCACATGAGCTTCC
1 CTCTCATGAGCTTCC
11924814 TATTATATGG
Statistics
Matches: 146, Mismatches: 34, Indels: 16
0.74 0.17 0.08
Matches are distributed among these distances:
23 2 0.01
24 36 0.25
25 108 0.74
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (25 bp):
CTCTCATGAGCTTCCCGATATTTGG
Found at i:11924744 original size:74 final size:74
Alignment explanation
Indices: 11924623--11924813 Score: 195
Period size: 74 Copynumber: 2.6 Consensus size: 74
11924613 TCCCGATATT
* * ** * * * *
11924623 TGGCTCTCATGAGCTTCCCGTTATTTGGCTCCCACGAGCTTCCCGATAATTGGCTTTCATGAGCT
1 TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGC-
*
11924688 TTCTGATTAA
65 TTCTCATTAA
* * * * * *
11924698 TGGCTCTCCGGAGCTTTCCGATA-TTGGCTCATATGAGCTTCCCGATATTTGACTCTCTTGAGCT
1 TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGCT
*
11924762 TCTCATTTA
66 TCTCATTAA
* * *
11924771 TGGCTCTTATGAGCTTCCCGTTACATGGCTCACATGAGCTTCC
1 TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCC
11924814 TATTATATGG
Statistics
Matches: 95, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
73 26 0.27
74 50 0.53
75 19 0.20
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (74 bp):
TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGCT
TCTCATTAA
Found at i:11924754 original size:49 final size:50
Alignment explanation
Indices: 11924615--11924790 Score: 143
Period size: 49 Copynumber: 3.6 Consensus size: 50
11924605 TATGAGCGTC
* *
11924615 CCGATATTTGGCTC-TCATGAGCTTCCCGTTATTTGGCTC-CCACGAGCTTC
1 CCGATA-TTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCC-CGAGCTTT
* * * *
11924665 CCGATAATTGGCT-TTCATGAGCTTTCTGAT-TAATGGCTCTCCGGAGCTTT
1 CCGAT-ATTGGCTCTTCATGAGCTTCCCGATAT-TTGGCTCTCCCGAGCTTT
* * **
11924715 CCGATATTGGCTCAT-ATGAGCTTCCCGATATTTGACTCTCTTGAGC-TT
1 CCGATATTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCCCGAGCTTT
*
11924763 CTC-ATTTATGGCTCTT-ATGAGCTTCCCG
1 C-CGATAT-TGGCTCTTCATGAGCTTCCCG
11924791 TTACATGGCT
Statistics
Matches: 103, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
48 6 0.06
49 51 0.50
50 43 0.42
51 3 0.03
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (50 bp):
CCGATATTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCCCGAGCTTT
Found at i:11924809 original size:49 final size:50
Alignment explanation
Indices: 11924722--11924847 Score: 132
Period size: 49 Copynumber: 2.5 Consensus size: 50
11924712 TTTCCGATAT
* ** * *
11924722 TGGCTCATATGAGCTTCCCGATATTTGACTCTCTTGAGCTT-CTCATT-TA
1 TGGCTCATATGAGCTTCCCGTTACATGACTCACATGAGCTTCCT-ATTATA
* *
11924771 TGGCTCTTATGAGCTTCCCGTTACATGGCTCACATGAGCTTCCTATTATA
1 TGGCTCATATGAGCTTCCCGTTACATGACTCACATGAGCTTCCTATTATA
* *
11924821 TGGCTCGA-AAGAGCTTCCTGTTACATG
1 TGGCTC-ATATGAGCTTCCCGTTACATG
11924848 CTTGTATGAG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
49 37 0.58
50 27 0.42
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.37
Consensus pattern (50 bp):
TGGCTCATATGAGCTTCCCGTTACATGACTCACATGAGCTTCCTATTATA
Found at i:11926184 original size:20 final size:21
Alignment explanation
Indices: 11926146--11926185 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
11926136 GATATGAAAT
11926146 TTTTGGTATATGATCTATAAA
1 TTTTGGTATATGATCTATAAA
*
11926167 TTTTGGTA-ATGCTCTATAA
1 TTTTGGTATATGATCTATAA
11926186 CCCTGTTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.47
Consensus pattern (21 bp):
TTTTGGTATATGATCTATAAA
Found at i:11940022 original size:47 final size:47
Alignment explanation
Indices: 11939968--11940061 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
11939958 AATTAAATTA
*
11939968 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATATAT
1 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
11940015 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
1 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
11940062 TAGTCATGCG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.43
Consensus pattern (47 bp):
ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
Found at i:11943235 original size:30 final size:30
Alignment explanation
Indices: 11943199--11943259 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
11943189 TAGAATTTTC
11943199 AAAATTATCGAAACATGAAGATGATAACAT
1 AAAATTATCGAAACATGAAGATGATAACAT
*
11943229 AAAATTATCGGAACATGAAGATGATAACAT
1 AAAATTATCGAAACATGAAGATGATAACAT
11943259 A
1 A
11943260 CTTAACTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.23
Consensus pattern (30 bp):
AAAATTATCGAAACATGAAGATGATAACAT
Found at i:11945381 original size:49 final size:50
Alignment explanation
Indices: 11945309--11945687 Score: 233
Period size: 50 Copynumber: 7.5 Consensus size: 50
11945299 CAAAGCTATG
* * * *
11945309 TCCCAGACATAGTCTTACATGAGATGTT-TCTTGTA-TTGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGAGA-GTTCTCATATAGGTGCCAATGCCATA
* * *
11945358 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
** * ** * * * *
11945408 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* * ** * * ** *
11945458 TCCCAGACATTGTCTTACATGGGACCTCTCATCTCGGTGCCAACACCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* * ** * * * *
11945508 TACCAGACATGGTCTTACATGGGACCTCTTATCTCA-GTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATAT-AGGTGCCAATGCCATA
* * ** * * * *
11945558 TCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* *** ** *
11945608 TCCCATACATGGTCTTACATGAGACCCCTCATAATCTCAATAATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCAT-A--T--A-GGTGCCAATGCCATA
11945664 TCCCAGACATGGTCTTACATGAGA
1 TCCCAGACATGGTCTTACATGAGA
11945688 TCTCTTTACC
Statistics
Matches: 280, Mismatches: 40, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
48 3 0.01
49 27 0.10
50 214 0.76
53 1 0.00
56 35 0.12
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
Found at i:11945413 original size:50 final size:50
Alignment explanation
Indices: 11945345--11945684 Score: 385
Period size: 50 Copynumber: 6.7 Consensus size: 50
11945335 TTTCTTGTAT
* * * * ** *
11945345 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * ** *
11945395 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* *
11945445 TGCCAACGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * *
11945495 TGCCAACACCATGTACCAGACATGGTCTTACATGGGACCTCTTATCTCA-G
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AGG
* *
11945545 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * **
11945595 TGCCAACGCCATGTCCCATACATGGTCTTACATGAGACCCCTCATAATCTCAATAA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA--CCTC-TCATCT--A-GG
*
11945651 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
11945685 AGATCTCTTT
Statistics
Matches: 248, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
50 207 0.83
52 4 0.02
53 5 0.02
56 32 0.13
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:11949624 original size:10 final size:10
Alignment explanation
Indices: 11949609--11949641 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
11949599 CCCTAAACTC
11949609 ATACATCCTT
1 ATACATCCTT
*
11949619 ATACATCCTC
1 ATACATCCTT
11949629 ATACATCCTT
1 ATACATCCTT
11949639 ATA
1 ATA
11949642 AACTGCCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (10 bp):
ATACATCCTT
Found at i:11949748 original size:43 final size:42
Alignment explanation
Indices: 11949641--11949770 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 42
11949631 ACATCCTTAT
* *
11949641 AAACTGCCACTGGGCTGTGGATGCACAATATATTTGCT-GATAA
1 AAACTGCCACTGGGCTGTGGGTGCA-AAAATATTTG-TAGATAA
* ** * * *
11949684 AAATTGCCACTAAGTTATGGGTGCATAACATATTTGTAGATAA
1 AAACTGCCACTGGGCTGTGGGTGCA-AAAATATTTGTAGATAA
11949727 AAACTGCCACTGGGCTGTGGGTGCAAATAATATTTGTAGATAA
1 AAACTGCCACTGGGCTGTGGGTGCAAA-AATATTTGTAGATAA
11949770 A
1 A
11949771 CTGCCATTGG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 3 0.04
43 68 0.96
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (42 bp):
AAACTGCCACTGGGCTGTGGGTGCAAAAATATTTGTAGATAA
Found at i:11957338 original size:27 final size:27
Alignment explanation
Indices: 11957299--11957476 Score: 209
Period size: 27 Copynumber: 6.6 Consensus size: 27
11957289 ATATTGAGTC
* * *
11957299 CGCACACTCAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
11957326 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
11957353 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* * *
11957381 CGCACACTTAGTG-TCGCATGGTCAATT
1 CGCACACTTAGTGCT-ACATAGTCAAAT
**
11957408 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAGTCAAAT
*
11957435 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
11957462 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
11957477 GTACAATTTA
Statistics
Matches: 133, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.03
27 102 0.77
28 22 0.17
29 5 0.04
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:11957440 original size:82 final size:80
Alignment explanation
Indices: 11957320--11957474 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 80
11957310 TGCTACATAA
*
11957320 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACAT-ATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
11957385 CACTTAGTGTCGCATGG
64 CACTTAGTGTCGCATGG
* **
11957402 TCAATTCGCACACTTAGTGCATCACAT-TCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGC-T-ACATATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
11957466 CACTTAGTG
64 CACTTAGTG
11957475 CTGTACAATT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
81 14 0.21
82 48 0.72
83 1 0.01
84 4 0.06
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACA
CTTAGTGTCGCATGG
Found at i:11965662 original size:29 final size:29
Alignment explanation
Indices: 11965619--11965915 Score: 396
Period size: 29 Copynumber: 10.2 Consensus size: 29
11965609 GTATTGATGC
*
11965619 CCATCGAATATGAAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* *
11965648 ACATCGAATATGAAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* **
11965677 CCATTGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * *
11965706 CCATCGAATATGAAAAAAGGATGATTTTGA
1 CCATCGAATATG-AAAAGGGATGGTTTCGA
* **
11965736 CCATTGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
11965765 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
** **
11965794 CCATTAAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
*
11965823 CCATCGAATTTGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
**
11965852 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* *
11965881 CCACCGAATATGAAAAGGGATAGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
11965910 CCATCG
1 CCATCG
11965916 TTTAGCACAC
Statistics
Matches: 229, Mismatches: 38, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
29 206 0.90
30 23 0.10
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.23
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTTTCGA
Found at i:11965714 original size:58 final size:58
Alignment explanation
Indices: 11965619--11965913 Score: 446
Period size: 58 Copynumber: 5.1 Consensus size: 58
11965609 GTATTGATGC
* *** * *
11965619 CCATCGAATATGAAAAGGGATGGTTTTGAACATCGAATATGAAAAGGGATGGTTTTGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
* * *
11965677 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAAGGATGATTTTGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATG-AAAAGGGATGGTTTCGA
11965736 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
* *
11965794 CCATTAAATATGAAAAGGGATGGTGGCGACCATCGAATTTGAAAAGGGATGGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
* * * *
11965852 CCATCGAATATGAAAAGGGATGGTGACGACCACCGAATATGAAAAGGGATAGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
11965910 CCAT
1 CCAT
11965914 CGTTTAGCAC
Statistics
Matches: 218, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
58 162 0.74
59 56 0.26
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.23
Consensus pattern (58 bp):
CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
Found at i:11977967 original size:27 final size:27
Alignment explanation
Indices: 11977937--11978113 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
11977927 AAATTGTACA
11977937 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * ** * *
11977964 GCACTAACTGTGCAAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
11977991 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
11978018 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * *
11978046 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
11978073 GCACTAAGTGTGCGAGTTGA-T-TGTAT
1 GCACTAAGTGTGCGATTTGACTATGT-T
*
11978099 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
11978114 GACTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 98 0.79
28 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:11978077 original size:82 final size:81
Alignment explanation
Indices: 11977937--11978092 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
11977927 AAATTGTACA
* *
11977937 GCACTAAGTGTGCGATTTGACTATGTTGCACTAACTGTGCAAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCACTAAGTGT
11978002 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * ** *
11978018 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAACTGTGCAAAATGAATACGAT-GCACTAAGT
*
11978082 GTGCGAGTTGA
64 GTGCGAATTGA
11978093 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:11978104 original size:82 final size:81
Alignment explanation
Indices: 11977929--11978113 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
11977919 GCGGGATTAA
* *
11977929 ATTGTACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAACTGTGCAAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCA
11977994 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * * * ** *
11978010 ACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAG
1 ATTGTACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAACTGTGCAAAATGAATACGAT-G
*
11978074 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
11978092 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
11978114 GACTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 19 0.23
82 63 0.77
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:11982259 original size:101 final size:102
Alignment explanation
Indices: 11982133--11982317 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
11982123 AAAGTGATGG
*
11982133 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAATGAT-A-GGTCCCATCTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATGATAATGGTCACATCTGTAGT
*
11982196 ACTATCTGCAGGCTACTATGCATACCGGATAGTTTCGA
65 ACTATCTGCAGGATACTATGCATACCGGATAGTTTCGA
* * * *
11982234 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTGTCGAATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGATAATGGTCACATCTGTAGTA
* *
11982299 CTATGTGTAGGATACTATG
66 CTATCTGCAGGATACTATG
11982318 TGAACCGAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 6 0.08
101 38 0.51
102 30 0.41
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGATAATGGTCACATCTGTAGTA
CTATCTGCAGGATACTATGCATACCGGATAGTTTCGA
Found at i:11982294 original size:51 final size:50
Alignment explanation
Indices: 11982129--11982315 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 50
11982119 AGTGAAAGTG
* *
11982129 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATGGT
* * * * ** * * *
11982180 A-GGTCCCATCTGTAGTACTATCTGCAGGCTACTATGCATACCGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
* * * * *
11982229 TTCGATCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTGTCGAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
* *
11982280 AATGGTCACATGTGTAGTACTATGTGTAGGATACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
11982316 TGTGAACCGA
Statistics
Matches: 102, Mismatches: 31, Indels: 6
0.73 0.22 0.04
Matches are distributed among these distances:
49 4 0.04
50 33 0.32
51 64 0.63
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
Found at i:11982393 original size:45 final size:45
Alignment explanation
Indices: 11982321--11982415 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
11982311 TACTATGTGA
** *
11982321 ACCGAACATCATTGATTGGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
*
11982366 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
11982411 ACCGA
1 ACCGA
11982416 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:11988235 original size:45 final size:45
Alignment explanation
Indices: 11988184--11988278 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
11988174 CTACTACTGA
* *
11988184 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
*
11988229 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
11988274 ACCGA
1 ACCGA
11988279 GTATCTGTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:11992467 original size:23 final size:23
Alignment explanation
Indices: 11992437--11992491 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
11992427 GACATCGTAG
11992437 ATGGCTTGAGCTATTGAAAGACT
1 ATGGCTTGAGCTATTGAAAGACT
11992460 ATGGCTTGAGCTATTGAAAGACT
1 ATGGCTTGAGCTATTGAAAGACT
*
11992483 ATGACTTGA
1 ATGGCTTGA
11992492 TCGATGATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (23 bp):
ATGGCTTGAGCTATTGAAAGACT
Found at i:11996370 original size:33 final size:33
Alignment explanation
Indices: 11996333--11996400 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
11996323 GAATACTTTC
11996333 TTCACTCGTTTATTTTACAAGT-TCTCTTTCCTT
1 TTCACTCGTTTATTTTAC-AGTCTCTCTTTCCTT
* * *
11996366 TTCACTCGTTTCTTTTTCAGTCTCTCTTTCTTT
1 TTCACTCGTTTATTTTACAGTCTCTCTTTCCTT
11996399 TT
1 TT
11996401 TCACGCTCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.10, C:0.25, G:0.06, T:0.59
Consensus pattern (33 bp):
TTCACTCGTTTATTTTACAGTCTCTCTTTCCTT
Found at i:11996402 original size:19 final size:19
Alignment explanation
Indices: 11996374--11996421 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
11996364 TTTTCACTCG
11996374 TTTC-TTTTTCA-GTCTCTC
1 TTTCTTTTTTCACG-CTCTC
11996392 TTTCTTTTTTCACGCTCTC
1 TTTCTTTTTTCACGCTCTC
*
11996411 -TTCTATTTTCA
1 TTTCTTTTTTCA
11996422 AGAACTCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 14 0.52
19 12 0.44
20 1 0.04
ACGTcount: A:0.08, C:0.27, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTCTTTTTTCACGCTCTC
Found at i:12001367 original size:29 final size:29
Alignment explanation
Indices: 12001325--12001649 Score: 380
Period size: 29 Copynumber: 11.2 Consensus size: 29
12001315 ATATCGACGC
*
12001325 CCATCGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
12001354 CCATCGAATATGAAAATGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * * *
12001383 CCATGGAATATGAAAAGGGATAGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
12001412 CCATCAAATATGAAAAGGGTTGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
*
12001441 CCATCGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
12001470 CCATCGAATATGAAAAAGGATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * * * *
12001499 CCATGGAATATGGAAAGGGATAGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
12001528 CCATCAAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
12001557 CCATCGAATATGAAAAGGGATGCTTTCGG
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
12001586 CCATCTAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
12001615 CCATTGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
*
12001644 TCATCG
1 CCATCG
12001650 TTTAGCACAC
Statistics
Matches: 245, Mismatches: 51, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 245 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.22
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGTCGA
Found at i:12001529 original size:116 final size:116
Alignment explanation
Indices: 12001320--12001641 Score: 509
Period size: 116 Copynumber: 2.8 Consensus size: 116
12001310 ACGACATATC
* * *
12001320 GACGCCCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAATGGATGGTTTCGACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
*
12001385 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGTTGGT
66 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
12001436 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
*
12001501 ATGGAATATGGAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
66 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
* ** * * * **
12001552 GACGACCATCGAATATGAAAAGGGATGCTTTCGGCCATCTAATATGAAAAGGGATGGTGACAACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
* *
12001617 ATTGAATATGAAAAGGGATGGTTTC
66 ATGGAATATGAAAAGGGATAGTTTC
12001642 GATCATCGTT
Statistics
Matches: 190, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 190 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.22
Consensus pattern (116 bp):
GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
Found at i:12007428 original size:51 final size:51
Alignment explanation
Indices: 12007366--12007469 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
12007356 CCTCTAATTA
*
12007366 AATTTCTACCATTTATGGTGATTTTACAAAGTTGCTCAACTGATGTTATTC
1 AATTTCCACCATTTATGGTGATTTTACAAAGTTGCTCAACTGATGTTATTC
12007417 AATTTCCACCATTTATGGTGATTTTACAAAGTTGCTCAACTGATGTTATTC
1 AATTTCCACCATTTATGGTGATTTTACAAAGTTGCTCAACTGATGTTATTC
12007468 AA
1 AA
12007470 AACTGTTTTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (51 bp):
AATTTCCACCATTTATGGTGATTTTACAAAGTTGCTCAACTGATGTTATTC
Found at i:12007733 original size:43 final size:44
Alignment explanation
Indices: 12007678--12007838 Score: 183
Period size: 43 Copynumber: 3.8 Consensus size: 44
12007668 TAAAATCTAT
*
12007678 GATACGG-GGAATCAGCACATAGCAACC-CCTTTCAAAATTAAG
1 GATACGGTGGAATCAGCACTTAGCAACCACCTTTCAAAATTAAG
* *
12007720 GATTA-GGTGGAATCAGCACTTAGCAACCACCTTT--ATATTCAG
1 GA-TACGGTGGAATCAGCACTTAGCAACCACCTTTCAAAATTAAG
* *
12007762 TGATACGG-GGAATCAGCACTTAGCAACC-CCTTTCACAATTAAA
1 -GATACGGTGGAATCAGCACTTAGCAACCACCTTTCAAAATTAAG
* * *
12007805 AATACGGTGGGATCAGCAGTTAGCAACCACCTTT
1 GATACGGTGGAATCAGCACTTAGCAACCACCTTT
12007839 AGAGTCAATA
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
41 5 0.05
42 38 0.38
43 47 0.47
44 10 0.10
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (44 bp):
GATACGGTGGAATCAGCACTTAGCAACCACCTTTCAAAATTAAG
Found at i:12007781 original size:42 final size:42
Alignment explanation
Indices: 12007676--12007878 Score: 191
Period size: 42 Copynumber: 4.8 Consensus size: 42
12007666 TATAAAATCT
*
12007676 ATGATACGGGGAATCAGCACATAGCAACCCCTTTCAAAATT-A
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTC-AAATTCA
* *
12007718 AGGATTA-GGTGGAATCAGCACTTAGCAACCACCTTT-ATATTCA
1 ATGA-TACGG-GGAATCAGCACTTAGCAACC-CCTTTCAAATTCA
*
12007761 GTGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATT-A
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCA-AATTCA
** * * * *
12007803 AAAATACGGTGGGATCAGCAGTTAGCAACCACCTTT-AGAGTCA
1 ATGATACGG-GGAATCAGCACTTAGCAACC-CCTTTCAAATTCA
* * *
12007846 ATAATTCAGGGAATCAGCACTTAGCAACCCCTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTT
12007879 AGGGAATCAG
Statistics
Matches: 133, Mismatches: 18, Indels: 21
0.77 0.10 0.12
Matches are distributed among these distances:
41 9 0.07
42 59 0.44
43 55 0.41
44 10 0.08
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCAAATTCA
Found at i:12007786 original size:85 final size:85
Alignment explanation
Indices: 12007676--12007878 Score: 282
Period size: 85 Copynumber: 2.4 Consensus size: 85
12007666 TATAAAATCT
* * *
12007676 ATGATACGGGGAATCAGCACATAGCAACCCCTTTCAAAATTAAGGATTA-GGTGGAATCAGCACT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCAAAATTAA-AAATACGGTGGAATCAGCACT
* *
12007740 TAGCAACCACCTTTATATTCA
65 TAGCAACCACCTTTAGAGTCA
* * * *
12007761 GTGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGGATCAGCAGTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCAAAATTAAAAATACGGTGGAATCAGCACTT
12007826 AGCAACCACCTTTAGAGTCA
66 AGCAACCACCTTTAGAGTCA
* * *
12007846 ATAATTCAGGGAATCAGCACTTAGCAACCCCTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTT
12007879 AGGGAATCAG
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 3 0.03
85 101 0.97
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (85 bp):
ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCAAAATTAAAAATACGGTGGAATCAGCACTT
AGCAACCACCTTTAGAGTCA
Found at i:12007882 original size:26 final size:26
Alignment explanation
Indices: 12007853--12007904 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12007843 TCAATAATTC
12007853 AGGGAATCAGCACTTAGCAACCCCTT
1 AGGGAATCAGCACTTAGCAACCCCTT
12007879 AGGGAATCAGCACTTAGCAACCCCTT
1 AGGGAATCAGCACTTAGCAACCCCTT
12007905 TTTATTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (26 bp):
AGGGAATCAGCACTTAGCAACCCCTT
Found at i:12015325 original size:42 final size:42
Alignment explanation
Indices: 12015201--12015510 Score: 247
Period size: 42 Copynumber: 7.3 Consensus size: 42
12015191 CGGTGGATTT
* ** * *
12015201 AGCACTTAGCAACCACC-ATAAATTCAGTGATATGGGAAATC
1 AGCACTTAGCAACCACCTTTAAATTCAAAGATACGGGGAATC
* * * * * **
12015242 AACACATAGAAATC-CCTTTCACAATT-AAGGATTTGGTGGAATC
1 AGCACTTAGCAACCACCTTT-A-AATTCAAAGATACGG-GGAATC
* **
12015285 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAAAGATACGGGGAATC
* * *
12015327 AGCACTTAGCAACC-CCATTCACAATT-AAAAATACGGTGGATTC
1 AGCACTTAGCAACCACC-TTTA-AATTCAAAGATACGG-GGAATC
* * *
12015370 AGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAAAGATACGGGGAATC
* * *
12015412 AGCACTTAGCAACC-CCATTCACAATT-AAAAATACGGTGGATTC
1 AGCACTTAGCAACCACC-TTTA-AATTCAAAGATACGG-GGAATC
* * *
12015455 AGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAAAGATACGGGGAATC
12015497 AGCACTTAGCAACC
1 AGCACTTAGCAACC
12015511 CCTCAGGGAA
Statistics
Matches: 210, Mismatches: 43, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
40 2 0.01
41 15 0.07
42 94 0.45
43 90 0.43
44 9 0.04
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (42 bp):
AGCACTTAGCAACCACCTTTAAATTCAAAGATACGGGGAATC
Found at i:12015350 original size:85 final size:85
Alignment explanation
Indices: 12015191--12015512 Score: 448
Period size: 85 Copynumber: 3.8 Consensus size: 85
12015181 ATCCGTTACT
* * * * ** * * * * * *
12015191 CGGTGGATTTAGCACTTAGCAACCACC-ATAAATTCAGTGATATGGGAAATCAACACATAGAAAT
1 CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
* ** *
12015255 CCCTTTCACAATTAAGGATT
66 CCCATTCACAATTAAAAATA
* * * **
12015275 TGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
12015340 CCCATTCACAATTAAAAATA
66 CCCATTCACAATTAAAAATA
12015360 CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
12015425 CCCATTCACAATTAAAAATA
66 CCCATTCACAATTAAAAATA
12015445 CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
12015510 CCC
66 CCC
12015513 TCAGGGAATC
Statistics
Matches: 217, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
84 24 0.11
85 193 0.89
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
CCCATTCACAATTAAAAATA
Done.