Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 46 of 185
Found at i:13739675 original size:89 final size:88
Alignment explanation
Indices: 13739478--13739910 Score: 679
Period size: 89 Copynumber: 4.9 Consensus size: 88
13739468 ATGCAATCTC
** * * ** *
13739478 CCACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTACAATCTTCCACCTATTCCACTGCAAGTA
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTC
13739543 AGGGAACTAGGGCTTACAGTCTT
66 AGGGAACTAGGGCTTACAGTCTT
**
13739566 CCACCTATTCCACTATTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCAACTGCTGGT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCC-ACTGCTGGT
*
13739631 CAGGGAACTAGGACTTACAGTCTT
65 CAGGGAACTAGGGCTTACAGTCTT
* *
13739655 CCACCTATTCCGCTGCTGGTCAGGGAACTAGGGCTTACAGTCTTTCACCTATTCCACTGCTGGTC
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTC
*
13739720 AGGGAACTAAGGCTTACAGTCTT
66 AGGGAACTAGGGCTTACAGTCTT
* *
13739743 CCACCTATTCCAACTGTTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTACTGGT
1 CCACCTATTCC-ACTGCTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGT
*
13739808 CAAGGAACTAGGGCTTACAG-CTT
65 CAGGGAACTAGGGCTTACAGTCTT
* *
13739831 CCACCTATTCCACTGCTGGTCAAGGAACTAGGGCTTACAGTCTTCTACCTATTCCACTGCTGGTC
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTC
13739896 AGGGAACTAGGGCTT
66 AGGGAACTAGGGCTT
13739911 GTGATTTCAC
Statistics
Matches: 316, Mismatches: 27, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
87 64 0.20
88 105 0.33
89 147 0.47
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (88 bp):
CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTC
AGGGAACTAGGGCTTACAGTCTT
Found at i:13742155 original size:60 final size:60
Alignment explanation
Indices: 13742077--13742200 Score: 144
Period size: 60 Copynumber: 2.1 Consensus size: 60
13742067 TCTCCTTTTC
*
13742077 TTTTTCCTTTTTTCCTTTTTCTTCTCTCTT-TTTTCATTTTCATTTTGACTTTGACTTTGA
1 TTTTTCCTTTTTTCCTTTTT-TTATCTCTTATTTTCATTTTCATTTTGACTTTGACTTTGA
* * * * * * *
13742137 TTTTT-CTTTTTCTTCTTTTTTTATTTTTTATTTTGATTTTGATTTTGATTTTGATTTTGA
1 TTTTTCCTTTTT-TCCTTTTTTTATCTCTTATTTTCATTTTCATTTTGACTTTGACTTTGA
13742197 TTTT
1 TTTT
13742201 GGTTTTTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
59 12 0.22
60 42 0.78
ACGTcount: A:0.10, C:0.12, G:0.06, T:0.72
Consensus pattern (60 bp):
TTTTTCCTTTTTTCCTTTTTTTATCTCTTATTTTCATTTTCATTTTGACTTTGACTTTGA
Found at i:13742170 original size:6 final size:6
Alignment explanation
Indices: 13742161--13742206 Score: 74
Period size: 6 Copynumber: 7.7 Consensus size: 6
13742151 CTTTTTTTAT
* *
13742161 TTTTTA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGG TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
13742207 TTTTGAATTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.13, C:0.00, G:0.15, T:0.72
Consensus pattern (6 bp):
TTTTGA
Found at i:13742176 original size:18 final size:19
Alignment explanation
Indices: 13742154--13742200 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
13742144 TTTTCTTCTT
* *
13742154 TTTTTATTTTTTATTTTGA
1 TTTTGATTTTTGATTTTGA
13742173 TTTTGA-TTTTGATTTTGA
1 TTTTGATTTTTGATTTTGA
13742191 TTTTGATTTT
1 TTTTGATTTT
13742201 GGTTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.15, C:0.00, G:0.11, T:0.74
Consensus pattern (19 bp):
TTTTGATTTTTGATTTTGA
Found at i:13742210 original size:54 final size:55
Alignment explanation
Indices: 13742105--13742210 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 55
13742095 TTCTTCTCTC
** *
13742105 TTTTTTCATTTTCATTTTGACTTTGACTTTGATTTTTCTTTTTCTTCTTTTTTTA
1 TTTTTTCATTTTCATTTTGACTTTGACTTTGATTTTGATTTTGCTTCTTTTTTTA
* * * *
13742160 TTTTTT-ATTTTGATTTTGATTTTGATTTTGATTTTGATTTTGGTT-TTTTTT
1 TTTTTTCATTTTCATTTTGACTTTGACTTTGATTTTGATTTTGCTTCTTTTTT
13742211 GAATTGGATC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 6 0.14
54 32 0.73
55 6 0.14
ACGTcount: A:0.11, C:0.07, G:0.09, T:0.73
Consensus pattern (55 bp):
TTTTTTCATTTTCATTTTGACTTTGACTTTGATTTTGATTTTGCTTCTTTTTTTA
Found at i:13746924 original size:213 final size:213
Alignment explanation
Indices: 13746557--13746980 Score: 839
Period size: 213 Copynumber: 2.0 Consensus size: 213
13746547 GGGCTGGGAA
13746557 TTTGCTTATTGGGCCTCGCCTTCAAGAATTTGGGCTTTTGTAACTCGTATCACGAGTATTGCATT
1 TTTGCTTATTGGGCCTCGCCTTCAAGAATTTGGGCTTTTGTAACTCGTATCACGAGTATTGCATT
13746622 ATTTTTGAAAACTTTTGTATGAGATAAATTTGACATTTGTAATCTTTTGAATAAACAAAAAAAAC
66 ATTTTTGAAAACTTTTGTATGAGATAAATTTGACATTTGTAATCTTTTGAATAAACAAAAAAAAC
13746687 AATTGAATAATAATGTACAACGCGAAATGATAATTTGTAAACTAAAGCATACATTAATGAATAAC
131 AATTGAATAATAATGTACAACGCGAAATGATAATTTGTAAACTAAAGCATACATTAATGAATAAC
*
13746752 AAAGATTTGATATATATG
196 AAAGATTCGATATATATG
13746770 TTTGCTTATTGGGCCTCGCCTTCAAGAATTTGGGCTTTTGTAACTCGTATCACGAGTATTGCATT
1 TTTGCTTATTGGGCCTCGCCTTCAAGAATTTGGGCTTTTGTAACTCGTATCACGAGTATTGCATT
13746835 ATTTTTGAAAACTTTTGTATGAGATAAATTTGACATTTGTAATCTTTTGAATAAACAAAAAAAAC
66 ATTTTTGAAAACTTTTGTATGAGATAAATTTGACATTTGTAATCTTTTGAATAAACAAAAAAAAC
13746900 AATTGAATAATAATGTACAACGCGAAATGATAATTTGTAAACTAAAGCATACATTAATGAATAAC
131 AATTGAATAATAATGTACAACGCGAAATGATAATTTGTAAACTAAAGCATACATTAATGAATAAC
13746965 AAAGATTCGATATATA
196 AAAGATTCGATATATA
13746981 CGAATAAACA
Statistics
Matches: 210, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 210 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (213 bp):
TTTGCTTATTGGGCCTCGCCTTCAAGAATTTGGGCTTTTGTAACTCGTATCACGAGTATTGCATT
ATTTTTGAAAACTTTTGTATGAGATAAATTTGACATTTGTAATCTTTTGAATAAACAAAAAAAAC
AATTGAATAATAATGTACAACGCGAAATGATAATTTGTAAACTAAAGCATACATTAATGAATAAC
AAAGATTCGATATATATG
Found at i:13747452 original size:18 final size:16
Alignment explanation
Indices: 13747429--13747464 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
13747419 ATAGGGTTTT
13747429 TAAAAGTATATTATAAAA
1 TAAAAGT-TATTA-AAAA
13747447 TAAAAGTTATTAAAAA
1 TAAAAGTTATTAAAAA
13747463 TA
1 TA
13747465 TTGGATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAAGTTATTAAAAA
Found at i:13754720 original size:24 final size:23
Alignment explanation
Indices: 13754684--13754728 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
13754674 ATATACATGC
*
13754684 GCATATTTTATATATAATATATAT
1 GCATATTTAATATAT-ATATATAT
13754708 GCATATTTAATATATATATAT
1 GCATATTTAATATATATATAT
13754729 TTATATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
GCATATTTAATATATATATATAT
Found at i:13756857 original size:19 final size:20
Alignment explanation
Indices: 13756817--13756860 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
13756807 GTCTCTTTAG
* *
13756817 GCATT-CATTTCATGCATTT
1 GCATTACATTACATGCATAT
13756836 GCATTACATTACAT-CATAT
1 GCATTACATTACATGCATAT
13756855 GCATTA
1 GCATTA
13756861 AACACCGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (20 bp):
GCATTACATTACATGCATAT
Found at i:13764141 original size:45 final size:45
Alignment explanation
Indices: 13764059--13765138 Score: 810
Period size: 45 Copynumber: 24.4 Consensus size: 45
13764049 TGAAAAGCAA
* * * * * *
13764059 CAGATCCTGTCTTCATATATTGGTAGCAAAGTGGATCGAAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * * *
13764104 TAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* ** * *
13764149 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * * * * * *
13764194 CAGATCTTGTATTCATGTATTGG-CGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* *
13764238 CAGATCTTGTCTTTCC-ATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTC-TTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
** * *
13764283 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * * * *
13764328 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * *
13764372 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * *** * *
13764417 CAAATCTTGTCTTCCTGTACTGGCAACGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * * * *
13764462 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * *
13764506 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * *** * *
13764551 CAAATCTTGTCTTCCTGTACTGGCAACGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * * * *
13764596 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * * *
13764640 CAGATCTTGTCTTTCTATACTGGTGGCGAAGTAGAGCGAAGAAAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * ** * *
13764685 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
* * * * *
13764730 TAGATCTTGTCTTCATGTA-T--TGAC--A-TA-A--AATAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGA-AGATAG
* * *
13764767 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
** * * *
13764812 TGGATCTTGTCTTCATGTA-T--TGACATGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCGAAGATAG
* * * * *
13764856 CAGATATTGGCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
** * * *
13764901 TGGATCTTGTCTTCATGTA-T--TGACATGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCGAAGATAG
* * *
13764945 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
** ** * ** *
13764990 TGGATCTTGAGTT--TAT-GTTTTGACATGAAGTAGATC-AGAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCGA-AGATAG
* * * *
13765034 CAGATCTTGTCTTCCCATACTGGTAGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
** * * * * *
13765079 TGGGTCTTGTCTTCATGTA-T--TGACATGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCGAAGATAG
13765123 CAGATCTTGTCTTCCT
1 CAGATCTTGTCTTCCT
13765139 GTATTGACAG
Statistics
Matches: 794, Mismatches: 206, Indels: 71
0.74 0.19 0.07
Matches are distributed among these distances:
36 2 0.00
37 20 0.03
38 2 0.00
39 2 0.00
40 3 0.00
42 10 0.01
43 5 0.01
44 258 0.32
45 482 0.61
46 4 0.01
47 6 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGATAG
Found at i:13764244 original size:89 final size:89
Alignment explanation
Indices: 13764059--13765159 Score: 951
Period size: 89 Copynumber: 12.4 Consensus size: 89
13764049 TGAAAAGCAA
* * * * * * ** *
13764059 CAGATCCTGTCTTCATATATTGGTAGCAAAGTGGATCGAAGATAGTAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTT--CAT-G
** * *
13764124 TGGTGGC--GAAGTAGATCGAAGAAAA
63 TATTGGCATGAAGTAGATCGAAGATAG
* * * * *
13764149 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAATATAGCAGATCTTGTATTCATGTAT
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
* *
13764214 TGGCGTGAAGTAGATCGAAGATAA
66 TGGCATGAAGTAGATCGAAGATAG
** * * *
13764238 CAGATCTTGTCTTTCC-ATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTATA
1 CAGATCTTGTC-TTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTA
* * * *
13764302 CTGGCAGCGAAGTAGATCAAATATAG
65 TTGGCA-TGAAGTAGATCGAAGATAG
* * * * * *
13764328 CAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTT--CAT-G
** * *
13764392 TGGTGGC--GAAGTAGATCGAAGAAAA
63 TATTGGCATGAAGTAGATCGAAGATAG
* * * * * *
13764417 CAAATCTTGTCTTCCTGTACTGGCAACGAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
*
13764482 TGGCGTGAAGTAGATCGAAGATAG
66 TGGCATGAAGTAGATCGAAGATAG
* ** * * * *
13764506 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAAATCTTGTCTTCCTGTAC
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
* * *
13764571 TGGCAACGAAGTAGATCAAATATAG
66 TGGC-ATGAAGTAGATCGAAGATAG
* * * * * *
13764596 CAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTC-TATA
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTC-TTCATGTA
* * *
13764659 CTGGTGGC--GAAGTAGAGCGAAGAAAA
65 -T--TGGCATGAAGTAGATCGAAGATAG
* * * * **
13764685 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAATATAGTAGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
*
13764750 TGACAT-AA--A-AT---AGATAG
66 TGGCATGAAGTAGATCGAAGATAG
* ** * **
13764767 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
*
13764832 TGACATGAAGTAGATCGAAGATAG
66 TGGCATGAAGTAGATCGAAGATAG
* * * ** * **
13764856 CAGATATTGGCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
*
13764921 TGACATGAAGTAGATCGAAGATAG
66 TGGCATGAAGTAGATCGAAGATAG
* ** * ** ** * *
13764945 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGAGTTTATGTTT
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
*
13765010 TGACATGAAGTAGATC-AGAGATAG
66 TGGCATGAAGTAGATCGA-AGATAG
* * * ** *
13765034 CAGATCTTGTCTTCCCATACTGGTAGTGAAGTAGATCGAAGATAATGGGTCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
* *
13765099 TGACATGAAGTAGATCAAAGATAG
66 TGGCATGAAGTAGATCGAAGATAG
* * * *
13765123 CAGATCTTGTCTTCCTGTATTGACAGCGAAGAAGATC
1 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATC
13765160 AAGGCTACAA
Statistics
Matches: 850, Mismatches: 132, Indels: 59
0.82 0.13 0.06
Matches are distributed among these distances:
82 65 0.08
83 2 0.00
85 2 0.00
86 3 0.00
87 13 0.02
88 9 0.01
89 565 0.66
90 180 0.21
91 2 0.00
92 9 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (89 bp):
CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCATGTAT
TGGCATGAAGTAGATCGAAGATAG
Found at i:13764332 original size:134 final size:134
Alignment explanation
Indices: 13764059--13765144 Score: 1352
Period size: 134 Copynumber: 8.2 Consensus size: 134
13764049 TGAAAAGCAA
* * * ** * *
13764059 CAGATCCTGTCTTCATATATTGGTAGCAAAGTGGATCGAAGATAGTAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
13764124 TGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAA
65 TGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAA
13764189 TATAG
130 TATAG
* * *
13764194 CAGATCTTGTATTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCTTGTCTTTCCATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
*
13764259 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCAAAT
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
13764324 ATAG
131 ATAG
13764328 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* *
13764393 GGTGGCGAAGTAGATCGAAGAAAACAAATCTTGTCTTCCTGTACTGGCAACGAAGTAGATCAAAT
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
13764458 ATAG
131 ATAG
13764462 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* *
13764527 GGTGGCGAAGTAGATCGAAGAAAACAAATCTTGTCTTCCTGTACTGGCAACGAAGTAGATCAAAT
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
13764592 ATAG
131 ATAG
* *
13764596 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTCTATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* *
13764661 GGTGGCGAAGTAGAGCGAAGAAAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAT
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
13764726 ATAG
131 ATAG
* * *
13764730 TAGATCTTGTCTTCATGTATTGACAT-AA--A-AT---AGATAGCAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* * ** * * * * * *
13764788 GGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCGAAG
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
13764852 ATAG
131 ATAG
* * *** * * *** *
13764856 CAGATATTGGCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTT--CAT-G
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
** * * * ** ** * *
13764918 TATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCG
65 TGGTGGC--GAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCA
* *
13764983 AAGATAA
128 AATATAG
** ** * * * *
13764990 TGGATCTTGAGTTTATGTTTTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCCCATAC
* * * ** * * * * *
13765054 TGGTAGTGAAGTAGATCGAAGATAATGGGTCTTGTCTTCATGTATTGACA-TGAAGTAGATCAAA
65 TGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAA
*
13765118 GATAG
130 TATAG
*
13765123 CAGATCTTGTCTTCCTGTATTG
1 CAGATCTTGTCTTCATGTATTG
13765145 ACAGCGAAGA
Statistics
Matches: 826, Mismatches: 110, Indels: 32
0.85 0.11 0.03
Matches are distributed among these distances:
126 31 0.04
127 68 0.08
128 2 0.00
130 3 0.00
131 6 0.01
132 4 0.00
133 94 0.11
134 593 0.72
135 23 0.03
136 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (134 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
ATAG
Found at i:13766355 original size:25 final size:24
Alignment explanation
Indices: 13766324--13766387 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 24
13766314 TATTATTATT
*
13766324 ATATTTTCTATACATATAAATGCGC
1 ATATTTTATATA-ATATAAATGCGC
*
13766349 ATATTTTATATAATATATAT--GC
1 ATATTTTATATAATATAAATGCGC
*
13766371 ATATTTAATATATATAT
1 ATATTTTATATA-ATAT
13766388 TTATATATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 13 0.37
23 4 0.11
24 7 0.20
25 11 0.31
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.47
Consensus pattern (24 bp):
ATATTTTATATAATATAAATGCGC
Found at i:13777677 original size:44 final size:45
Alignment explanation
Indices: 13777623--13777711 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 45
13777613 ATTTTGTTCC
* * *
13777623 ATGAATTTTCCAGCTGAAAACTAAGTTC-ATTTAGCTTATTAATT
1 ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
13777667 ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
1 ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
13777712 TGTAATCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 27 0.66
45 14 0.34
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (45 bp):
ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
Found at i:13778599 original size:32 final size:34
Alignment explanation
Indices: 13778531--13778607 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 34
13778521 TGGACTTTAT
* * *
13778531 TATATATAATATATATACGTGGTTTTCGGTGTTA
1 TATATATAATATATATACATGGTTCTCAGTGTTA
* *
13778565 TATATATAATATATATGCATGGTTCT-ATTGTATA
1 TATATATAATATATATACATGGTTCTCAGTGT-TA
13778599 TAGTATATA
1 TA-TATATA
13778608 TAATTATGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 3 0.08
34 27 0.75
35 6 0.17
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (34 bp):
TATATATAATATATATACATGGTTCTCAGTGTTA
Found at i:13781360 original size:18 final size:18
Alignment explanation
Indices: 13781337--13781375 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
13781327 ACCCAGCTTG
* *
13781337 GAAGATGATTGTTGAAAA
1 GAAGATGATTGCTAAAAA
13781355 GAAGATGATTGCTAAAAA
1 GAAGATGATTGCTAAAAA
13781373 GAA
1 GAA
13781376 TTAAGTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.03, G:0.26, T:0.23
Consensus pattern (18 bp):
GAAGATGATTGCTAAAAA
Found at i:13782505 original size:43 final size:43
Alignment explanation
Indices: 13782404--13782509 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 43
13782394 TTACTGAGAG
* * *
13782404 GTGATAACATGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 GTGATAACATGTAAGACCATGTCTGGAACAGTGGCATCGATAT
* ** * * *
13782447 ATGATTTCATATAAGATCATGTTTGGAACAGTGGCATCGATAT
1 GTGATAACATGTAAGACCATGTCTGGAACAGTGGCATCGATAT
13782490 GTGATAACATGTAAGACCAT
1 GTGATAACATGTAAGACCAT
13782510 ATCTAGGATA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (43 bp):
GTGATAACATGTAAGACCATGTCTGGAACAGTGGCATCGATAT
Found at i:13787138 original size:15 final size:15
Alignment explanation
Indices: 13787117--13787152 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
13787107 AGTGTTAATG
13787117 AAATCTACCAGTTGT
1 AAATCTACCAGTTGT
* *
13787132 GAATCTACTAGTTGT
1 AAATCTACCAGTTGT
13787147 AAATCT
1 AAATCT
13787153 TACGAATCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (15 bp):
AAATCTACCAGTTGT
Found at i:13790048 original size:6 final size:6
Alignment explanation
Indices: 13790005--13790032 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
13789995 AGTTTTTTCA
13790005 AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAA
13790033 ATGACCTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:13792982 original size:98 final size:98
Alignment explanation
Indices: 13792813--13793005 Score: 323
Period size: 98 Copynumber: 2.0 Consensus size: 98
13792803 ACAATAAAAC
* *
13792813 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATCCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATCCC
**
13792878 TTTAGAATCCCAAACTCGGAATATTTCCTTTAT
66 TTTAGAAAACCAAACTCGGAATATTTCCTTTAT
* *
13792911 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATCCC
*
13792976 TTTAGAAAATCAAACTCGGAATATTTCCTT
66 TTTAGAAAACCAAACTCGGAATATTTCCTT
13793006 CATGATTTTT
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 88 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATCCC
TTTAGAAAACCAAACTCGGAATATTTCCTTTAT
Found at i:13794016 original size:11 final size:11
Alignment explanation
Indices: 13794000--13794029 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
13793990 ATCCTTCAGC
13794000 CATCGGCCGGT
1 CATCGGCCGGT
*
13794011 CATCGGACGGT
1 CATCGGCCGGT
13794022 CATCGGCC
1 CATCGGCC
13794030 ANNNNNNNNN
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (11 bp):
CATCGGCCGGT
Found at i:13795030 original size:45 final size:44
Alignment explanation
Indices: 13794932--13795060 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 44
13794922 GGAACTAGTG
* * *
13794932 CTTCAATCTACTCCTCTGCAACTTCAGGGAGATAAGATTTGCCAT
1 CTTCAGTCTACTCCACTGCAACTTCAGGG-GATAAGACTTGCCAT
* **
13794977 CTTCAGTCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTGCTTT
1 CTTCAGTCTACTC-CACTGCAACTTCAGG-GGATAAGACTTGCCAT
* *
13795022 GCTT-AGTCTACTCCACTGCAACCTCAGGGGGATTAGACT
1 -CTTCAGTCTACTCCACTGCAACTTCA-GGGGATAAGACT
13795061 AGATGCGCTC
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
44 1 0.01
45 62 0.89
46 7 0.10
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTCAGTCTACTCCACTGCAACTTCAGGGGATAAGACTTGCCAT
Found at i:13795098 original size:59 final size:59
Alignment explanation
Indices: 13795024--13795137 Score: 165
Period size: 59 Copynumber: 1.9 Consensus size: 59
13795014 CTTGCTTTGC
* * * *
13795024 TTAGTCTACTCCACTGCAACCTCAGGGGGATTAGACTAGATGCGCTCTGTTCTCTACAA
1 TTAGTCTACTCCACTGCAACCTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAA
** *
13795083 TTAGTCTTGTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCT
1 TTAGTCTACTCCACTGCAACCTCAGGGAGATAAGACTAGATGCGATCTGCTCTCT
13795138 GTAACTTCAG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (59 bp):
TTAGTCTACTCCACTGCAACCTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAA
Found at i:13795232 original size:44 final size:43
Alignment explanation
Indices: 13795127--13795247 Score: 127
Period size: 44 Copynumber: 2.8 Consensus size: 43
13795117 ACTAGATGCG
* * *
13795127 ATCTGCT-CTCTGTAACTTCAGAGAGATAGGATCTGTAATTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAGGAT-TGTAACTTTA
* * * **
13795170 ATCCGCTCAACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAGGATTGT-AACTTTA
* *
13795214 TTCTGCTCCACTGTAACTTCAGGGAGATAAGATT
1 ATCTGCTCCACTGTAACTTCAGGGAGATAGGATT
13795248 TGCCCTCTTC
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 9 0.14
44 54 0.86
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (43 bp):
ATCTGCTCCACTGTAACTTCAGGGAGATAGGATTGTAACTTTA
Found at i:13795337 original size:45 final size:45
Alignment explanation
Indices: 13795174--13795337 Score: 149
Period size: 45 Copynumber: 3.7 Consensus size: 45
13795164 ATTTTAATCC
* * * *
13795174 GCTCAACTGCAACTTCAGGGAGATAGGA-TTG-TCGGCTTTATTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTCTGC-TTAGTCT
* * *
13795218 GCTCCACTGTAACTTCAGGGAGATAAGATTTGCCCT-CTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTCTGCTT-AGTCT
* * * * *
13795263 GC-CTTACTGCGACTTCA-GAAGAATGAGACTTGCTTTGCTTAGTCT
1 GCTC-CACTGCAACTTCAGGGAG-ATAAGACTTGCTCTGCTTAGTCT
13795308 GCTCCACTGCAACTTCAGGGAGATAAGACT
1 GCTCCACTGCAACTTCAGGGAGATAAGACT
13795338 AGATGCGATT
Statistics
Matches: 94, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
44 31 0.33
45 55 0.59
46 8 0.09
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.30
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTCTGCTTAGTCT
Found at i:13795942 original size:29 final size:29
Alignment explanation
Indices: 13795900--13795957 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
13795890 CCAAATATGA
13795900 AAAAACAGTCTTAATTTGGACTTCTCCTT
1 AAAAACAGTCTTAATTTGGACTTCTCCTT
13795929 AAAAACAGTCTTAATTTGGACTTCTCCTT
1 AAAAACAGTCTTAATTTGGACTTCTCCTT
13795958 CTTAGGCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (29 bp):
AAAAACAGTCTTAATTTGGACTTCTCCTT
Found at i:13811620 original size:98 final size:98
Alignment explanation
Indices: 13811451--13811645 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
13811441 TTACAATAAA
*
13811451 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
13811516 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* *
13811549 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
13811614 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
13811646 CATGATTTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:13812160 original size:246 final size:246
Alignment explanation
Indices: 13811726--13812216 Score: 973
Period size: 246 Copynumber: 2.0 Consensus size: 246
13811716 TGAATTCCCA
13811726 ATAATGAGCTTTTATTTTAATTAAAAGAATATCCATTTTGAAAAAAAGTTTGATTTTAAAAATCG
1 ATAATGAGCTTTTATTTTAATTAAAAGAATATCCATTTTGAAAAAAAGTTTGATTTTAAAAATCG
13811791 AGTAAAAAAATGTAATGTTATGCTACATTAAATATAAATACTATGATAGCATAGAGATGTTGCAA
66 AGTAAAAAAATGTAATGTTATGCTACATTAAATATAAATACTATGATAGCATAGAGATGTTGCAA
13811856 ATATATGAACAAATGAATAACGAATGACATATAATATATCAAATAAATGCACAATACAAATATAT
131 ATATATGAACAAATGAATAACGAATGACATATAATATATCAAATAAATGCACAATACAAATATAT
13811921 AATAAATGAAATTACGAAGAATTAGAAGCATACATAAGAATTTTCATGTAG
196 AATAAATGAAATTACGAAGAATTAGAAGCATACATAAGAATTTTCATGTAG
13811972 ATAATGAGCTTTTATTTTAATTAAAAGAATATCCATTTTGAAAAAAAGTTTGATTTTAAAAATCG
1 ATAATGAGCTTTTATTTTAATTAAAAGAATATCCATTTTGAAAAAAAGTTTGATTTTAAAAATCG
13812037 AGTAAAAAAATGTAATGTTATGCTACATTAAATATAAATACTATGATAGCATAGAGATGTTGCAA
66 AGTAAAAAAATGTAATGTTATGCTACATTAAATATAAATACTATGATAGCATAGAGATGTTGCAA
13812102 ATATATGAACAAATGAATAACGAATGACATATAATATATCAAATAAATGCACAATACAAATATAT
131 ATATATGAACAAATGAATAACGAATGACATATAATATATCAAATAAATGCACAATACAAATATAT
*
13812167 AATAAATGAAATTACGAAGAATTAGAAGCATACATATGAATTTTCATGTA
196 AATAAATGAAATTACGAAGAATTAGAAGCATACATAAGAATTTTCATGTA
13812217 AAACTTTGAT
Statistics
Matches: 244, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 244 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (246 bp):
ATAATGAGCTTTTATTTTAATTAAAAGAATATCCATTTTGAAAAAAAGTTTGATTTTAAAAATCG
AGTAAAAAAATGTAATGTTATGCTACATTAAATATAAATACTATGATAGCATAGAGATGTTGCAA
ATATATGAACAAATGAATAACGAATGACATATAATATATCAAATAAATGCACAATACAAATATAT
AATAAATGAAATTACGAAGAATTAGAAGCATACATAAGAATTTTCATGTAG
Found at i:13817953 original size:4 final size:4
Alignment explanation
Indices: 13817944--13817968 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13817934 AAACTAAGTA
13817944 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
13817969 TAAAACTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:13819089 original size:23 final size:23
Alignment explanation
Indices: 13819058--13819103 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
13819048 ATCATTAAAA
*
13819058 TTTTTTTATGATATTTT-TTATT
1 TTTTTTTATGAAATTTTCTTATT
13819080 TTTTTATTATGAAATTTTCTTATT
1 TTTTT-TTATGAAATTTTCTTATT
13819104 ATATGATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 11 0.52
24 5 0.24
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (23 bp):
TTTTTTTATGAAATTTTCTTATT
Found at i:13820430 original size:41 final size:41
Alignment explanation
Indices: 13820385--13820467 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
13820375 GAGGCCCGAA
*
13820385 ACCCGACTCTGAATCTGCCATCCTCCTCCGCACATTCTTAT
1 ACCCGACTCTGAATCTGCCATCCTCCTCCGCACATTCCTAT
*
13820426 ACCCGACTCTGAATCTGCCCTCCTCCTCCGCACATTCCTAT
1 ACCCGACTCTGAATCTGCCATCCTCCTCCGCACATTCCTAT
13820467 A
1 A
13820468 ACCAGAAGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.19, C:0.43, G:0.10, T:0.28
Consensus pattern (41 bp):
ACCCGACTCTGAATCTGCCATCCTCCTCCGCACATTCCTAT
Found at i:13822874 original size:18 final size:17
Alignment explanation
Indices: 13822846--13822880 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13822836 ATTATTAAGA
*
13822846 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13822863 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13822881 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13823127 original size:45 final size:44
Alignment explanation
Indices: 13823027--13823136 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
13823017 TTTTCCATTA
13823027 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
13823066 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
13823111 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
13823137 CCTCTATTCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:13823136 original size:16 final size:16
Alignment explanation
Indices: 13823115--13823168 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
13823105 TTGATTTGCT
13823115 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
13823131 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
13823147 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
13823163 AATACA
1 ATTACA
13823169 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:13828320 original size:4 final size:4
Alignment explanation
Indices: 13828311--13828360 Score: 91
Period size: 4 Copynumber: 12.5 Consensus size: 4
13828301 GACACTAAGG
*
13828311 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
13828359 AC
1 AC
13828361 CCCAAATTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:13839932 original size:43 final size:41
Alignment explanation
Indices: 13839797--13839985 Score: 252
Period size: 41 Copynumber: 4.5 Consensus size: 41
13839787 CAAACAAAAA
* * **
13839797 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTTGTTTGTG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT-TCTAAG
*
13839839 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAG
* * **
13839880 CGCCTCTAAAGAGCATGTTCTTTAGCGGCGTTTTTTTTCTATC
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG--TTTTTTCTAAG
*
13839923 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAG
*
13839964 CGCCGCTAAAGAACATGGTCTT
1 CGCCGCTAAAGAACATGTTCTT
13839986 CCCTCGCTTC
Statistics
Matches: 132, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
41 63 0.48
42 33 0.25
43 36 0.27
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (41 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAG
Found at i:13839952 original size:84 final size:83
Alignment explanation
Indices: 13839797--13839985 Score: 288
Period size: 84 Copynumber: 2.3 Consensus size: 83
13839787 CAAACAAAAA
* * * * *
13839797 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTTGTTTGTGCGCCTCTAAAGAACATGTTCTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTGTTTATCCGCCGCTAAAGAACATGGTCTTT
13839862 AGCGGCGTTTTTTCTAAG
66 AGCGGCGTTTTTTCTAAG
* * *
13839880 CGCCTCTAAAGAGCATGTTCTTTAGCGGCGTTTTTTTTCTATCCGCCGCTAAAGAACATGGTCTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTGTT-TATCCGCCGCTAAAGAACATGGTCTT
13839945 TAGCGGCGTTTTTTCTAAG
65 TAGCGGCGTTTTTTCTAAG
*
13839964 CGCCGCTAAAGAACATGGTCTT
1 CGCCGCTAAAGAACATGTTCTT
13839986 CCCTCGCTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
83 35 0.37
84 60 0.63
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (83 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTGTTTATCCGCCGCTAAAGAACATGGTCTTT
AGCGGCGTTTTTTCTAAG
Found at i:13844184 original size:7 final size:7
Alignment explanation
Indices: 13844174--13844219 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
13844164 TGATATATTT
13844174 TTATGTA
1 TTATGTA
13844181 TTATGTAA
1 TTATGT-A
13844189 GTTATGTAA
1 -TTATGT-A
13844198 GTTATGTA
1 -TTATGTA
13844206 TTATGTA
1 TTATGTA
13844213 TTATGTA
1 TTATGTA
13844220 AGTACTGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.54
8 2 0.05
9 15 0.41
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (7 bp):
TTATGTA
Found at i:13844244 original size:27 final size:27
Alignment explanation
Indices: 13844181--13845286 Score: 1377
Period size: 27 Copynumber: 41.5 Consensus size: 27
13844171 TTTTTATGTA
13844181 TTATGTAAGTTATGTAAGTTATGT-A-
1 TTATGTAAGTTATGTAAGTTATGTAAG
13844206 TTATGT-A-TTATGTAAG-TACTGTAAG
1 TTATGTAAGTTATGTAAGTTA-TGTAAG
* *
13844231 TAATGTAAGTTATGTAAGTAATGT-A-
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844256 TTATGTAAGTTGTGTATA-ATAT-TAA-
1 TTATGTAAGTTATGTA-AGTTATGTAAG
* * *
13844281 TTATGTGAGTTGTGT-A-TAATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844306 TTAAG-AAGGTTATGT-A-TAATGTAAG
1 TTATGTAA-GTTATGTAAGTTATGTAAG
*
13844331 TTATTTAAGTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844358 TTGTGT-A-TAATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844383 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844410 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844437 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844464 TTATGTAAGTTATGTAAGTTATTTAAT
1 TTATGTAAGTTATGTAAGTTATGTAAG
*
13844491 TTATGTAAGTTATGTAAGTTATTTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
13844518 TTATGTAAGTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844545 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844572 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844599 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
*
13844626 TTATTTAAGTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844653 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844680 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844707 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
*
13844734 TTATTTAAGTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
*
13844761 TTATGTAAGTTATTTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844788 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844815 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844842 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844869 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844896 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844923 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844950 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13844977 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13845004 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13845031 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13845058 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13845085 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13845112 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* * *
13845139 TTATGTAAGTTATTTAATTTACT-TAAT
1 TTATGTAAGTTATGTAAGTTA-TGTAAG
* * *
13845166 TTATGTAAGTTATGTAAGATATTTAAT
1 TTATGTAAGTTATGTAAGTTATGTAAG
* *
13845193 TTATGTAAGTTATGTAAGTTATTTAAT
1 TTATGTAAGTTATGTAAGTTATGTAAG
13845220 TTATGTAAGTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAG
* * *
13845247 TTATTTAATTTTTGTAAGTTATGTAA-
1 TTATGTAAGTTATGTAAGTTATGTAAG
13845273 TTAATGTAAGTTAT
1 TT-ATGTAAGTTAT
13845287 TTAATTTGTG
Statistics
Matches: 1010, Mismatches: 52, Indels: 36
0.92 0.05 0.03
Matches are distributed among these distances:
22 2 0.00
23 15 0.01
24 7 0.01
25 93 0.09
26 11 0.01
27 880 0.87
28 2 0.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (27 bp):
TTATGTAAGTTATGTAAGTTATGTAAG
Found at i:13853854 original size:115 final size:114
Alignment explanation
Indices: 13853635--13853872 Score: 379
Period size: 115 Copynumber: 2.1 Consensus size: 114
13853625 AAATATTTGT
* *
13853635 GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAGG
1 GGCGTTTTTAAATACACCACTAAAAGAAAACAACAAAACGGCACCGTCCTTGTTACAGTTAAAGG
* *
13853700 AAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAAAATATCACTTTTAGC
66 AAATTTGCGGCGTTTCTTCGTAAAACGCCGGTAAAATATCACCTTTAGC
* * *
13853749 GGCGTTTTTCAAATGCACCACTAAAGGAAAACAACAAAACGGCACTGTCCTTGTTACAGTTAAAG
1 GGCGTTTTT-AAATACACCACTAAAAGAAAACAACAAAACGGCACCGTCCTTGTTACAGTTAAAG
*
13853814 GAAATTTGCGGCGTTTCTTCAG-AAAACGCCGGTAATATATCACCTTTAGC
65 GAAATTTGCGGCGTTTCTTC-GTAAAACGCCGGTAAAATATCACCTTTAGC
13853864 GGCGTTTTT
1 GGCGTTTTT
13853873 TTATGAAGCG
Statistics
Matches: 114, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
114 9 0.08
115 104 0.91
116 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (114 bp):
GGCGTTTTTAAATACACCACTAAAAGAAAACAACAAAACGGCACCGTCCTTGTTACAGTTAAAGG
AAATTTGCGGCGTTTCTTCGTAAAACGCCGGTAAAATATCACCTTTAGC
Found at i:13854379 original size:21 final size:21
Alignment explanation
Indices: 13854345--13854405 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
13854335 AATCATAAAT
**
13854345 CCTAAACCCCAAACCTAAAAC
1 CCTAAACCGTAAACCTAAAAC
* **
13854366 TCTAAACTTTAAACCGT-AAAC
1 CCTAAACCGTAAACC-TAAAAC
13854387 CCTAAACCGTAAACCTAAA
1 CCTAAACCGTAAACCTAAA
13854406 CCATATTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.18
Consensus pattern (21 bp):
CCTAAACCGTAAACCTAAAAC
Found at i:13854385 original size:14 final size:14
Alignment explanation
Indices: 13854375--13854407 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
13854365 CTCTAAACTT
13854375 TAAACCGTAAACCC
1 TAAACCGTAAACCC
13854389 TAAACCGTAAA-CC
1 TAAACCGTAAACCC
13854402 TAAACC
1 TAAACC
13854408 ATATTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.45, C:0.33, G:0.06, T:0.15
Consensus pattern (14 bp):
TAAACCGTAAACCC
Found at i:13854575 original size:20 final size:21
Alignment explanation
Indices: 13854537--13854586 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
13854527 TCTTCAATTT
13854537 CCAAACT-AAACCCTAAAACC
1 CCAAACTCAAACCCTAAAACC
* *
13854557 CTAAACTCAAA-CCTTAAACC
1 CCAAACTCAAACCCTAAAACC
13854577 CCAAACTCAA
1 CCAAACTCAA
13854587 TCTCTAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (21 bp):
CCAAACTCAAACCCTAAAACC
Found at i:13857409 original size:37 final size:33
Alignment explanation
Indices: 13857368--13857475 Score: 90
Period size: 37 Copynumber: 3.0 Consensus size: 33
13857358 CAAGATAAAC
13857368 ATTAAATTTAATTTAATATTAAGATAATCACTTTAAT
1 ATTAAATTTAATTTAATATTAAGATAAT-A--TT-AT
** *
13857405 ATTAAATTAATAAAATACTATTAAGATAAGTATTAT
1 ATTAAATT--TAATTTAATATTAAGATAA-TATTAT
*
13857441 ATTAAATTTAATATTAAACTATTAAAATAATATTA
1 ATTAAATTTAAT-TT-AA-TATTAAGATAATATTA
13857476 ATTTTGGAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
34 3 0.05
35 1 0.02
36 16 0.28
37 20 0.34
39 17 0.29
40 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (33 bp):
ATTAAATTTAATTTAATATTAAGATAATATTAT
Found at i:13857428 original size:25 final size:25
Alignment explanation
Indices: 13857374--13857428 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
13857364 AAACATTAAA
*
13857374 TTTAATTTAATATTAAGATAATCAC
1 TTTAATTTAATATTAAGAAAATCAC
*
13857399 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAAT-TTAATATTAAGAAAATCAC
13857423 TATTAA
1 T-TTAA
13857429 GATAAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAAAATCAC
Found at i:13864650 original size:27 final size:27
Alignment explanation
Indices: 13864584--13864793 Score: 175
Period size: 27 Copynumber: 8.0 Consensus size: 27
13864574 TACCCTTGAT
* * *
13864584 GGGTAAAATGACCGAAATATCTC-G-A
1 GGGTAAAATGACCGTAATACCCCTGTA
13864609 TGGGTAAAATGACCGTAATACCCCTGTA
1 -GGGTAAAATGACCGTAATACCCCTGTA
* * * *
13864637 GGGTAAAATAACCGTAATACTCTTATA
1 GGGTAAAATGACCGTAATACCCCTGTA
* * *
13864664 GGGTAAAATGATCGTAAT----TTATCA
1 GGGTAAAATGACCGTAATACCCCTGT-A
*
13864688 -GGTAAAATGACCATAAT-CCCCTTGTA
1 GGGTAAAATGACCGTAATACCCC-TGTA
* * * *
13864714 GGGTAAAATAACCATAATGCCCCTTTA
1 GGGTAAAATGACCGTAATACCCCTGTA
*
13864741 GGGTAAAATGACCGTAATACCTCTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
* *
13864768 GGGTAAAATGACTGTAATGCCCCTGT
1 GGGTAAAATGACCGTAATACCCCTGT
13864794 TACTGGTGGC
Statistics
Matches: 152, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
23 19 0.12
24 1 0.01
26 21 0.14
27 106 0.70
28 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATACCCCTGTA
Found at i:13864680 original size:54 final size:55
Alignment explanation
Indices: 13864584--13864793 Score: 197
Period size: 54 Copynumber: 4.0 Consensus size: 55
13864574 TACCCTTGAT
* * *
13864584 GGGTAAAATGACCGAAATA-TCTCGAT-GGGTAAAATGACCGTAATACCCCTGTA
1 GGGTAAAATGACCGTAATACTCTCTATAGGGTAAAATGACCGTAATGCCCCTGTA
* * * *
13864637 GGGTAAAATAACCGTAATACTCT-TATAGGGTAAAATGATCGTAAT----TTATCA
1 GGGTAAAATGACCGTAATACTCTCTATAGGGTAAAATGACCGTAATGCCCCTGT-A
* * * * * * *
13864688 -GGTAAAATGACCATAATCCCCT-TGTAGGGTAAAATAACCATAATGCCCCTTTA
1 GGGTAAAATGACCGTAATACTCTCTATAGGGTAAAATGACCGTAATGCCCCTGTA
* *
13864741 GGGTAAAATGACCGTAATAC-CTCTGTAGGGTAAAATGACTGTAATGCCCCTGT
1 GGGTAAAATGACCGTAATACTCTCTATAGGGTAAAATGACCGTAATGCCCCTGT
13864794 TACTGGTGGC
Statistics
Matches: 126, Mismatches: 22, Indels: 17
0.76 0.13 0.10
Matches are distributed among these distances:
50 38 0.30
51 1 0.01
53 22 0.17
54 65 0.52
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (55 bp):
GGGTAAAATGACCGTAATACTCTCTATAGGGTAAAATGACCGTAATGCCCCTGTA
Found at i:13864714 original size:77 final size:77
Alignment explanation
Indices: 13864567--13864758 Score: 219
Period size: 77 Copynumber: 2.5 Consensus size: 77
13864557 CGAATCATGG
* * * * * *
13864567 ACCAAAAT-ACCCTTGATGGGTAAAATGACCGAAATATCTCGATGGGTAAAATGACCGTAATACC
1 ACCATAATGACCCTTTA-GGGTAAAATGACCGTAATTTATC-A--GGTAAAATGACCATAATACC
13864631 CCTGTAGGGTAAAATA
62 CCTGTAGGGTAAAATA
* * *
13864647 ACCGTAAT-ACTCTTATAGGGTAAAATGATCGTAATTTATCAGGTAAAATGACCATAAT-CCCCT
1 ACCATAATGACCCTT-TAGGGTAAAATGACCGTAATTTATCAGGTAAAATGACCATAATACCCC-
13864710 TGTAGGGTAAAATA
64 TGTAGGGTAAAATA
*
13864724 ACCATAATGCCCCTTTAGGGTAAAATGACCGTAAT
1 ACCATAATGACCCTTTAGGGTAAAATGACCGTAAT
13864759 ACCTCTGTAG
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
76 4 0.04
77 56 0.58
78 4 0.04
79 1 0.01
80 30 0.31
81 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (77 bp):
ACCATAATGACCCTTTAGGGTAAAATGACCGTAATTTATCAGGTAAAATGACCATAATACCCCTG
TAGGGTAAAATA
Found at i:13864850 original size:27 final size:27
Alignment explanation
Indices: 13864793--13864853 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
13864783 AATGCCCCTG
*
13864793 TTACTGGTGGCTCTGCCACAATCACTG
1 TTACTGGTGGCTCTGCCACAATCACTA
*
13864820 TTACTGGTGGCT-TGGCCACATAT-ATTA
1 TTACTGGTGGCTCT-GCCACA-ATCACTA
13864847 TTACTGG
1 TTACTGG
13864854 CAGATTTGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 1 0.03
27 27 0.90
28 2 0.07
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
TTACTGGTGGCTCTGCCACAATCACTA
Found at i:13864940 original size:32 final size:32
Alignment explanation
Indices: 13864900--13864984 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 32
13864890 GCGATGCTAA
13864900 TAATGGCTTTGTGTCGATCATAGT-ACCGTTAC
1 TAATGGCTTTGTGTCGATCATAGTGA-CGTTAC
* *
13864932 TAATGGCTTGGTG-CTGATCATATTGACGTTAC
1 TAATGGCTTTGTGTC-GATCATAGTGACGTTAC
** *
13864964 CGATGGCTATGTGTCGATCAT
1 TAATGGCTTTGTGTCGATCAT
13864985 TTCACTATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
31 1 0.02
32 41 0.93
33 2 0.05
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (32 bp):
TAATGGCTTTGTGTCGATCATAGTGACGTTAC
Found at i:13865002 original size:32 final size:31
Alignment explanation
Indices: 13864960--13865065 Score: 106
Period size: 32 Copynumber: 3.3 Consensus size: 31
13864950 CATATTGACG
*
13864960 TTACCGATGGCTATGTGTCGATCATTTCACTA
1 TTACTGATGGCTATGTG-CGATCATTTCACTA
* * *
13864992 TTACTCATGGCTGTGTGCTGATCATATCACTA
1 TTACTGATGGCTATGTGC-GATCATTTCACTA
* * *
13865024 CTACTGATGGCTTTGTGCCGATCATGTT-ACCA
1 TTACTGATGGCTATGTG-CGATCAT-TTCACTA
13865056 TTACTGATGG
1 TTACTGATGG
13865066 TTGTGTACCG
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
31 1 0.02
32 58 0.95
33 2 0.03
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (31 bp):
TTACTGATGGCTATGTGCGATCATTTCACTA
Found at i:13865033 original size:64 final size:64
Alignment explanation
Indices: 13864965--13865111 Score: 188
Period size: 64 Copynumber: 2.3 Consensus size: 64
13864955 TGACGTTACC
* * * * *
13864965 GATGGCTATGTGTCGATCAT-TTCACTATTACTCATGGCTGTGTGCTGATCATATCACTACTACT
1 GATGGCTTTGTGCCGATCATGTT-ACCATTACTCATGGCTGTGTACCGATCATATCACTACTACT
* * * *
13865029 GATGGCTTTGTGCCGATCATGTTACCATTACTGATGGTTGTGTACCGGTCATATCACTGCTACT
1 GATGGCTTTGTGCCGATCATGTTACCATTACTCATGGCTGTGTACCGATCATATCACTACTACT
*
13865093 GATGGCTTTGTGCCAATCA
1 GATGGCTTTGTGCCGATCA
13865112 CATTACTGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
64 70 0.97
65 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (64 bp):
GATGGCTTTGTGCCGATCATGTTACCATTACTCATGGCTGTGTACCGATCATATCACTACTACT
Found at i:13865093 original size:32 final size:32
Alignment explanation
Indices: 13864978--13865103 Score: 119
Period size: 32 Copynumber: 3.9 Consensus size: 32
13864968 GGCTATGTGT
* * * * *
13864978 CGATCATTTCACTATTACTCATGGCTGTGTGC
1 CGATCATATCACTACTACTGATGGCTTTGTAC
* *
13865010 TGATCATATCACTACTACTGATGGCTTTGTGC
1 CGATCATATCACTACTACTGATGGCTTTGTAC
* * * *
13865042 CGATCATGTTACCATTACTGATGG-TTGTGTAC
1 CGATCATATCACTACTACTGATGGCTT-TGTAC
* *
13865074 CGGTCATATCACTGCTACTGATGGCTTTGT
1 CGATCATATCACTACTACTGATGGCTTTGT
13865104 GCCAATCACA
Statistics
Matches: 75, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
31 2 0.03
32 71 0.95
33 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (32 bp):
CGATCATATCACTACTACTGATGGCTTTGTAC
Found at i:13865147 original size:22 final size:21
Alignment explanation
Indices: 13865122--13865187 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
13865112 CATTACTGTA
13865122 CTTATGGCTTGTAGCCATTCTG
1 CTTATGGCTT-TAGCCATTCTG
* * *
13865144 CTTATAGCTTATAGCTATCCTG
1 CTTATGGCTT-TAGCCATTCTG
* *
13865166 TTTACGGCTCTTAGCCATTCTG
1 CTTATGGCT-TTAGCCATTCTG
13865188 ACTACTGGCA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (21 bp):
CTTATGGCTTTAGCCATTCTG
Found at i:13865210 original size:26 final size:26
Alignment explanation
Indices: 13865181--13865233 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13865171 GGCTCTTAGC
* *
13865181 CATTCTGACTACTGGCAGCTCTACTG
1 CATTATGACTACTGGCAGCTATACTG
*
13865207 CATTATTACTACTGGCAGCTATACTG
1 CATTATGACTACTGGCAGCTATACTG
13865233 C
1 C
13865234 GATATTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (26 bp):
CATTATGACTACTGGCAGCTATACTG
Found at i:13868765 original size:14 final size:14
Alignment explanation
Indices: 13868746--13868783 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
13868736 AAAATATCAG
13868746 AAAAAGAAAACGAA
1 AAAAAGAAAACGAA
* *
13868760 AAAAAGGAAACTAA
1 AAAAAGAAAACGAA
13868774 AAAAAGAAAA
1 AAAAAGAAAA
13868784 AGTAAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.79, C:0.05, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAAAGAAAACGAA
Found at i:13871321 original size:28 final size:28
Alignment explanation
Indices: 13871289--13871346 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
13871279 TGACTCAAAG
13871289 ATTCTATATGTCCTAATCAAAGTGTAGC
1 ATTCTATATGTCCTAATCAAAGTGTAGC
13871317 ATTCTATATGTCCTAATCAAAGTGTAGC
1 ATTCTATATGTCCTAATCAAAGTGTAGC
13871345 AT
1 AT
13871347 AAAGCTAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (28 bp):
ATTCTATATGTCCTAATCAAAGTGTAGC
Found at i:13873480 original size:9 final size:9
Alignment explanation
Indices: 13873458--13873519 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
13873448 TCTAGTATAC
*
13873458 ATAAAAGAT
1 ATAAAAAAT
*
13873467 TTAAAAAAT
1 ATAAAAAAT
*
13873476 ATAAAAAAA
1 ATAAAAAAT
*
13873485 ATAAAATAT
1 ATAAAAAAT
*
13873494 ATAAAAAGT
1 ATAAAAAAT
*
13873503 -TTAAAAAT
1 ATAAAAAAT
13873511 AATAAAAAA
1 -ATAAAAAA
13873520 CAAATATAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
8 6 0.15
9 28 0.70
10 6 0.15
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (9 bp):
ATAAAAAAT
Found at i:13873488 original size:27 final size:27
Alignment explanation
Indices: 13873458--13873517 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
13873448 TCTAGTATAC
*
13873458 ATAAAAGATTTAAAAAATATAAAAAAA
1 ATAAAAGATATAAAAAATATAAAAAAA
* * * *
13873485 ATAAAATATATAAAAAGTTTAAAAATA
1 ATAAAAGATATAAAAAATATAAAAAAA
13873512 ATAAAA
1 ATAAAA
13873518 AACAAATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (27 bp):
ATAAAAGATATAAAAAATATAAAAAAA
Found at i:13876046 original size:113 final size:113
Alignment explanation
Indices: 13875848--13876097 Score: 500
Period size: 113 Copynumber: 2.2 Consensus size: 113
13875838 GCAAAAATGC
13875848 CACACCCAATACGTTAGGGCACAACATTCCAATTTCCTCCAAAATGAATTAGGTCAGAATACTTA
1 CACACCCAATACGTTAGGGCACAACATTCCAATTTCCTCCAAAATGAATTAGGTCAGAATACTTA
13875913 TACAATAAAACTTTTAAAGAACATCCACTCATCCAAGATTTAAGAAAT
66 TACAATAAAACTTTTAAAGAACATCCACTCATCCAAGATTTAAGAAAT
13875961 CACACCCAATACGTTAGGGCACAACATTCCAATTTCCTCCAAAATGAATTAGGTCAGAATACTTA
1 CACACCCAATACGTTAGGGCACAACATTCCAATTTCCTCCAAAATGAATTAGGTCAGAATACTTA
13876026 TACAATAAAACTTTTAAAGAACATCCACTCATCCAAGATTTAAGAAAT
66 TACAATAAAACTTTTAAAGAACATCCACTCATCCAAGATTTAAGAAAT
13876074 CACACCCAATACGTTAGGGCACAA
1 CACACCCAATACGTTAGGGCACAA
13876098 TTCCTTTAGA
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 137 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.24
Consensus pattern (113 bp):
CACACCCAATACGTTAGGGCACAACATTCCAATTTCCTCCAAAATGAATTAGGTCAGAATACTTA
TACAATAAAACTTTTAAAGAACATCCACTCATCCAAGATTTAAGAAAT
Found at i:13878437 original size:45 final size:43
Alignment explanation
Indices: 13878051--13878435 Score: 256
Period size: 45 Copynumber: 8.8 Consensus size: 43
13878041 TTGATCTACC
* * * * **
13878051 AGTCTGCTCTACTACAACTTCATGGAGATAGGATTGTCGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTTTGC-TT
* *
13878095 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATT-TTCCAT-CTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTT---TGCTT
*
13878139 CAGTTTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGTTTTGCTT
1 -AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTG-TTTGCTT
* * *
13878185 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-G
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTTTGCTT
* * *
13878227 A-TCTACT-CTCTGCAACTTCAGGGAGATAAGATCTGAGGTT--TT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T--GTTTGCTT
* ** * * **
13878269 AATCCACTCCACTGTAACTTCAGGGAGATAGGATTGTCGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTTTGC-TT
* * *
13878313 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATGTGCCTT-CTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG-TTTGCTT
*
13878357 CAGTCTGC-CTCACTGCAACTTCA-AGAGGATAAGACTTGCTTTGCTT
1 -AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTG-TTTGCTT
13878403 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
13878436 CTAGATGCGA
Statistics
Matches: 272, Mismatches: 38, Indels: 61
0.73 0.10 0.16
Matches are distributed among these distances:
39 1 0.00
40 23 0.08
41 6 0.02
42 3 0.01
43 11 0.04
44 94 0.35
45 116 0.43
46 16 0.06
48 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTTTGCTT
Found at i:13878444 original size:218 final size:218
Alignment explanation
Indices: 13878066--13878464 Score: 708
Period size: 218 Copynumber: 1.8 Consensus size: 218
13878056 GCTCTACTAC
* *
13878066 AACTTCATGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTT
1 AACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATGT
* * * *
13878131 TCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGTTTTGCTTAGTCTGCTCCA
66 GCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCA
13878196 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGATAAGATCT
131 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGATAAGATCT
13878261 GAGGTTTTAATCCACTCCACTGT
196 GAGGTTTTAATCCACTCCACTGT
* *
13878284 AACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATGT
1 AACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATGT
*
13878349 GCCTTCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCA
66 GCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCA
*
13878414 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGTAACTTCA
131 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCA
13878465 AGATAGGCCA
Statistics
Matches: 171, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
218 171 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (218 bp):
AACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATGT
GCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCA
CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGATAAGATCT
GAGGTTTTAATCCACTCCACTGT
Found at i:13878981 original size:45 final size:46
Alignment explanation
Indices: 13878880--13879002 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 46
13878870 TCGGCTTTAA
13878880 TCTGCTCCACTGCAACTTCA-GAGAGATAAGA-TTTTCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGAGAGATAAGACTTTT-CATCTTCAG
* *
13878925 TTTGC-CTCACTGCAACTTCAGGAG-GATAAGACTTGTT-TTGCTT-AG
1 TCTGCTC-CACTGCAACTTCAGGAGAGATAAGACTT-TTCAT-CTTCAG
*
13878970 TCTGCTCCACTGCAACTACAGG-GAGATAAGACT
1 TCTGCTCCACTGCAACTTCAGGAGAGATAAGACT
13879003 AGATGCGATC
Statistics
Matches: 67, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
44 2 0.03
45 54 0.81
46 9 0.13
47 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (46 bp):
TCTGCTCCACTGCAACTTCAGGAGAGATAAGACTTTTCATCTTCAG
Found at i:13895335 original size:98 final size:98
Alignment explanation
Indices: 13895166--13895360 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
13895156 ATACAATAAA
* *
13895166 ACTTTAAAAGAACATCCACTCATCTAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
13895231 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* *
13895264 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
13895329 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
13895361 CATGATTTCT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:13901801 original size:21 final size:21
Alignment explanation
Indices: 13901761--13901801 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13901751 GTAGAAATGA
* *
13901761 GGTCATACCACTTGACCTTAG
1 GGTCATACCACTTCAACTTAG
*
13901782 GGTCATATCACTTCAACTTA
1 GGTCATACCACTTCAACTTA
13901802 ATAAATCACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (21 bp):
GGTCATACCACTTCAACTTAG
Found at i:13904600 original size:16 final size:16
Alignment explanation
Indices: 13904579--13904611 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13904569 CTCGCTGTAT
13904579 TGGAATAGAGACGTAA
1 TGGAATAGAGACGTAA
*
13904595 TGGAATAGAGGCGTAA
1 TGGAATAGAGACGTAA
13904611 T
1 T
13904612 AGGTAATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGACGTAA
Found at i:13904680 original size:44 final size:46
Alignment explanation
Indices: 13904593--13904685 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 46
13904583 ATAGAGACGT
*
13904593 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
13904639 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
13904683 AAT
1 AAT
13904686 AGAGGTGTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 24 0.52
45 3 0.07
46 19 0.41
ACGTcount: A:0.28, C:0.04, G:0.31, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
Found at i:13904681 original size:39 final size:44
Alignment explanation
Indices: 13904593--13904698 Score: 141
Period size: 39 Copynumber: 2.5 Consensus size: 44
13904583 ATAGAGACGT
*
13904593 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTT--ATGG
13904639 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T-G
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
*
13904678 AATGGAATAGAGGTGTAATAG
1 AATGGAATAGAGGCGTAATAG
13904699 CATAAGGAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
39 19 0.33
40 2 0.04
43 1 0.02
44 13 0.23
45 3 0.05
46 19 0.33
ACGTcount: A:0.29, C:0.04, G:0.32, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
Found at i:13904868 original size:18 final size:18
Alignment explanation
Indices: 13904845--13904978 Score: 83
Period size: 18 Copynumber: 6.9 Consensus size: 18
13904835 TTATTATTAA
13904845 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
13904863 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
*
13904880 ATATGAATTTACTAAAATCAT
1 ATAT-AATTTAATAAAA--AT
** * *
13904901 AATATAAAATACTATAAA-
1 -ATATAATTTAATAAAAAT
*
13904919 ATATAATTTAAAATAATTATCATTAA
1 ATATAATTT--AATAA--A--A--AT
13904945 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
13904963 ATATAATTTGATAAAA
1 ATATAATTTAATAAAA
13904979 TTCTTAGTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 28
0.71 0.08 0.22
Matches are distributed among these distances:
17 16 0.17
18 35 0.38
19 7 0.08
20 1 0.01
21 12 0.13
22 5 0.05
23 1 0.01
24 5 0.05
25 1 0.01
26 9 0.10
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:13905038 original size:61 final size:58
Alignment explanation
Indices: 13904858--13905058 Score: 187
Period size: 61 Copynumber: 3.4 Consensus size: 58
13904848 TAATTTAATA
*
13904858 AAAATATATAATTTAATAA-AA-TATATGAATTTACTAAAATCATAATATAAAATACTAT
1 AAAAT-TATAATTTAA-AATAATTATATGAATTTACTAAAATCATAATATATAATACTAT
* * * ** * * *
13904916 AAAA-TATAATTTAAAATAATTATCATTAAATATAATTTAATAAAAATATATAAT-TTGAT
1 AAAATTATAATTTAAAATAATTAT-A-TGAATTTACTAAAATCATAATATATAATACT-AT
* * *
13904975 AAAATTCTTAGTATTAAATATTATTATATGAATTTACTAAAATCATAATATATAATACTAT
1 AAAATT-ATAAT-TTAAA-ATAATTATATGAATTTACTAAAATCATAATATATAATACTAT
13905036 AAAA-TATAATTTAAAATAATTAT
1 AAAATTATAATTTAAAATAATTAT
13905059 TATTAAATAT
Statistics
Matches: 110, Mismatches: 23, Indels: 21
0.71 0.15 0.14
Matches are distributed among these distances:
55 2 0.02
56 12 0.11
57 10 0.09
58 11 0.10
59 29 0.26
60 2 0.02
61 30 0.27
62 7 0.06
63 7 0.06
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (58 bp):
AAAATTATAATTTAAAATAATTATATGAATTTACTAAAATCATAATATATAATACTAT
Found at i:13905417 original size:30 final size:30
Alignment explanation
Indices: 13905378--13905437 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
13905368 ATCAACAGAA
*
13905378 ATAAGAAGTTTAATGGTCAGCAAGAAATCT
1 ATAAAAAGTTTAATGGTCAGCAAGAAATCT
13905408 ATAAAAAGTTTAATGGTCAGCAAGAAATCT
1 ATAAAAAGTTTAATGGTCAGCAAGAAATCT
13905438 TCTGACCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (30 bp):
ATAAAAAGTTTAATGGTCAGCAAGAAATCT
Found at i:13916693 original size:40 final size:40
Alignment explanation
Indices: 13916649--13916872 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
13916639 AAGTGAATAT
* * * * **
13916649 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
13916689 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
13916729 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
13916769 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
13916809 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
13916848 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
13916873 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:13916747 original size:80 final size:80
Alignment explanation
Indices: 13916610--13916872 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
13916600 TTGAATGCTG
* * * * *
13916610 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
13916672 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
13916690 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
13916755 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
13916770 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
13916834 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
13916849 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
13916873 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:13916824 original size:120 final size:120
Alignment explanation
Indices: 13916610--13916872 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
13916600 TTGAATGCTG
* * *
13916610 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
13916674 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
13916730 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
13916792 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
13916849 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
13916873 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:13926256 original size:20 final size:20
Alignment explanation
Indices: 13926231--13926275 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
13926221 CACCCTTGAC
13926231 CAAGTCACCAACTCAGTTAG
1 CAAGTCACCAACTCAGTTAG
13926251 CAAGTCACCAACTCAGTTAG
1 CAAGTCACCAACTCAGTTAG
13926271 CAAGT
1 CAAGT
13926276 TATGAGGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.20
Consensus pattern (20 bp):
CAAGTCACCAACTCAGTTAG
Found at i:13926455 original size:18 final size:19
Alignment explanation
Indices: 13926432--13926474 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
13926422 ACTAAAGTTT
13926432 TTTTAATATTT-TTAT-ACA
1 TTTTAAT-TTTATTATCACA
13926450 TTTTAATTTTATTATGCACA
1 TTTTAATTTTATTAT-CACA
13926470 TTTTA
1 TTTTA
13926475 TTACCTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
20 8 0.36
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAATTTTATTATCACA
Found at i:13931958 original size:90 final size:93
Alignment explanation
Indices: 13931787--13932012 Score: 255
Period size: 90 Copynumber: 2.4 Consensus size: 93
13931777 TGACTCTACC
* *
13931787 AAATAAAATATCA-ATTTTATATTTAAATTAAAAAACACATTTACAAAAAAAAAAGATACAATAC
1 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTT--AAAAAAAAAAGATACAATAC
* * * *
13931851 ACTTGTGGTGCCATTCTTAAT-GTCTCGACA
64 ACTGGTAGCGCCATTCTTAATGGT-TCCACA
* *
13931881 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACA-TT-AAAAAACATG-TACAATACAC
1 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTTAAAAAAAAAAGATACAATACAC
*
13931943 TGGTAGCGCCATTCTTAATGGTTCCACC
66 TGGTAGCGCCATTCTTAATGGTTCCACA
* *
13931971 AAATAAAATATGATTTTTTTTAATTTTTAAATTTAAAAAATA
1 AAATAAAATATCA--TTTTTT-ATATTTAAA-TTAAAAAATA
13932013 AAAAAAATAT
Statistics
Matches: 115, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
90 42 0.37
91 10 0.09
92 6 0.05
93 8 0.07
94 25 0.22
95 24 0.21
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (93 bp):
AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTTAAAAAAAAAAGATACAATACAC
TGGTAGCGCCATTCTTAATGGTTCCACA
Found at i:13933280 original size:44 final size:44
Alignment explanation
Indices: 13933183--13933269 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
13933173 TATTAATCAA
* *
13933183 GTAATAAAACCATCCAAACAAGCAGTCAAGCTAGCAATTATAAC
1 GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAAC
*
13933227 GTAATAAAATCATCCAAACAAGCAGTTAAGCAAGCAATTATAA
1 GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAA
13933270 TGTTAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.49, C:0.20, G:0.11, T:0.20
Consensus pattern (44 bp):
GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAAC
Found at i:13944098 original size:34 final size:34
Alignment explanation
Indices: 13944049--13944124 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
13944039 GAGTTAGTTT
*
13944049 ATTAACTTTAGTTCAGCTCAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
* *
13944083 ATTAATTTTATTTCAGCTTAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
13944117 ATTAATTT
1 ATTAATTT
13944125 GTTTAAATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.45
Consensus pattern (34 bp):
ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:13960957 original size:19 final size:19
Alignment explanation
Indices: 13960933--13960970 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13960923 AGTTTTAGAT
13960933 TCTCGGGCCCAATTTTCAA
1 TCTCGGGCCCAATTTTCAA
* *
13960952 TCTCGGGTCTAATTTTCAA
1 TCTCGGGCCCAATTTTCAA
13960971 CTCCATTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (19 bp):
TCTCGGGCCCAATTTTCAA
Found at i:13975583 original size:25 final size:25
Alignment explanation
Indices: 13975545--13975650 Score: 90
Period size: 25 Copynumber: 4.3 Consensus size: 25
13975535 TGTAATCGGG
* * *
13975545 AAGCTCTTTCGAGCCATATAACAGA
1 AAGCTCATACGAGCCATATAACGGA
* ** *
13975570 AAGCTCATATGAGCTGTATAACGGG
1 AAGCTCATACGAGCCATATAACGGA
* * * *
13975595 AAGCTCTTACGAGCCAAATATCGGG
1 AAGCTCATACGAGCCATATAACGGA
13975620 AAGCTCATACGAGCCATA-AAC-GA
1 AAGCTCATACGAGCCATATAACGGA
13975643 GAAGCTCA
1 -AAGCTCA
13975651 AGAGAGTCAT
Statistics
Matches: 63, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
23 1 0.02
24 9 0.14
25 53 0.84
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.20
Consensus pattern (25 bp):
AAGCTCATACGAGCCATATAACGGA
Found at i:13975691 original size:25 final size:25
Alignment explanation
Indices: 13975605--13975688 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
13975595 AAGCTCTTAC
*
13975605 GAGCCAA-ATATCGGGAAGCTCAT-A
1 GAGCCAATA-ATCGAGAAGCTCATGA
* *
13975629 CGAGCC-ATAAACGAGAAGCTCAAGA
1 -GAGCCAATAATCGAGAAGCTCATGA
* *
13975654 GAGTCATTAATCGAGAAGCTCATGA
1 GAGCCAATAATCGAGAAGCTCATGA
13975679 GAGCCGAATA
1 GAGCC-AATA
13975689 TCGGAAAGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
24 16 0.35
25 27 0.59
26 3 0.07
ACGTcount: A:0.39, C:0.20, G:0.25, T:0.15
Consensus pattern (25 bp):
GAGCCAATAATCGAGAAGCTCATGA
Found at i:13977899 original size:41 final size:41
Alignment explanation
Indices: 13977852--13977961 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
13977842 TAGCAACCCC
*
13977852 TCGGGGAATCTGCATTTAGCAACCCCTTTTTGATCAGTGAT
1 TCGGGGAATCTGCATTTAGCAACCCCTTTTTGACCAGTGAT
* * *
13977893 TTGGGGAATCTGCATTTAGCAACCCTTTTTTTACCAGTGAT
1 TCGGGGAATCTGCATTTAGCAACCCCTTTTTGACCAGTGAT
* *
13977934 TCGAGGAATCTGCACTTAGCAACCCCTT
1 TCGGGGAATCTGCATTTAGCAACCCCTT
13977962 ACATTCAATG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (41 bp):
TCGGGGAATCTGCATTTAGCAACCCCTTTTTGACCAGTGAT
Found at i:13983257 original size:78 final size:78
Alignment explanation
Indices: 13983163--13983318 Score: 303
Period size: 78 Copynumber: 2.0 Consensus size: 78
13983153 TTGGAATTAA
*
13983163 TAAAGAAAATCGAAACCCAATAAGTTAGGGCTCAATTTTCCTCGAAAATTCCTAACCTTGAATAT
1 TAAAGAAAATCGAAACCCAATAAATTAGGGCTCAATTTTCCTCGAAAATTCCTAACCTTGAATAT
13983228 CGTTTTTATTTTT
66 CGTTTTTATTTTT
13983241 TAAAGAAAATCGAAACCCAATAAATTAGGGCTCAATTTTCCTCGAAAATTCCTAACCTTGAATAT
1 TAAAGAAAATCGAAACCCAATAAATTAGGGCTCAATTTTCCTCGAAAATTCCTAACCTTGAATAT
13983306 CGTTTTTATTTTT
66 CGTTTTTATTTTT
13983319 AAAACCTTTG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (78 bp):
TAAAGAAAATCGAAACCCAATAAATTAGGGCTCAATTTTCCTCGAAAATTCCTAACCTTGAATAT
CGTTTTTATTTTT
Found at i:13983825 original size:16 final size:16
Alignment explanation
Indices: 13983804--13983834 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13983794 AAACATTGAG
13983804 AACATACATATATATT
1 AACATACATATATATT
*
13983820 AACATATATATATAT
1 AACATACATATATAT
13983835 ACGCGCACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
AACATACATATATATT
Found at i:13985485 original size:50 final size:50
Alignment explanation
Indices: 13985431--13985966 Score: 302
Period size: 50 Copynumber: 10.7 Consensus size: 50
13985421 TAAGAAGGTA
* * * *
13985431 AGATCCGTCGTTGTGGCTTCAATCTTTTTAATTACGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
* * * * * * ** ***
13985481 AGATCCGCCATTGTGACTTCAAT-TTGCTTCACTGCACCGCCAAGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTT-TTTAATTGCACCGTCGGGGAAACC
* * ** *
13985531 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGTGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
* * * ** ** * * * ***
13985581 AAATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
*
13985631 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCCGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
* * * ** ** * * * ***
13985681 AAATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
* *
13985731 AGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
** ** * ** * * * ***
13985781 AGATTTGCCGTTGTGATTTCAAT-TTGCTCCACTGCACCGCCCGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTT-TTTAATTGCACCGTCGGGGAAACC
* * *
13985831 AGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
** * * ** ** * * * * ***
13985881 AGATCTACTGTTGTGACTTCAATCTGCTCCACTACACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
* *
13985931 AGATCTGCCGTTGTGGCTTCAATCTTTTAAATTGCA
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCA
13985967 ATGTCAAAGA
Statistics
Matches: 339, Mismatches: 143, Indels: 8
0.69 0.29 0.02
Matches are distributed among these distances:
49 4 0.01
50 331 0.98
51 4 0.01
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (50 bp):
AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACCGTCGGGGAAACC
Found at i:13985485 original size:100 final size:100
Alignment explanation
Indices: 13985401--13985965 Score: 853
Period size: 100 Copynumber: 5.7 Consensus size: 100
13985391 TCGTAGCTTA
* * * * * *
13985401 AATCTGTTCAACTGCACCGCTA-AGAAGGTAAGATCCGTCGTTGTGGCTTCAATCTTTTTAATTA
1 AATCTGCTCCACTGCACCGCCAGGGAA-GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTG
* *
13985465 CGCTGTCGGGGAAACCAGATCCGCCATTGTGACTTC
65 CGCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
* * * * * *
13985501 AATTTGCTTCACTGCACCGCCAAGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGT
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
*
13985566 GCTGTCGGGGAAACCAAATCTGCCGTTGTGACTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
13985601 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* *
13985666 GCCGTCGGGGAAACCAAATCTGCCGTTGTGACTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
*
13985701 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* * *
13985766 ACTGTCGGGGAAACCAGATTTGCCGTTGTGATTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
* * *
13985801 AATTTGCTCCACTGCACCGCCCGGGAAGTAAGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* *
13985866 GCTGTCGGGGAAACCAGATCTACTGTTGTGACTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
* * *
13985901 AATCTGCTCCACTACACCGCCAGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTAAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
13985966 AATGTCAAAG
Statistics
Matches: 422, Mismatches: 42, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
100 419 0.99
101 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (100 bp):
AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
Found at i:13987427 original size:22 final size:22
Alignment explanation
Indices: 13987402--13987445 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
13987392 TTAGCCTCTC
*
13987402 CATTTTTATTTTTTTCAT-TTTT
1 CATTTTCA-TTTTTTCATATTTT
13987424 CATTTTCATTTTTTCATATTTT
1 CATTTTCATTTTTTCATATTTT
13987446 TTCACATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (22 bp):
CATTTTCATTTTTTCATATTTT
Found at i:13992286 original size:16 final size:16
Alignment explanation
Indices: 13992265--13992295 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13992255 AAACATTGAG
13992265 AACATACATATATATT
1 AACATACATATATATT
*
13992281 AACATATATATATAT
1 AACATACATATATAT
13992296 ACGCGCACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
AACATACATATATATT
Found at i:13999965 original size:61 final size:61
Alignment explanation
Indices: 13999868--13999990 Score: 185
Period size: 61 Copynumber: 2.0 Consensus size: 61
13999858 TTAACAACTT
* *
13999868 ACTTAATTTCACGATCGGACAATCTAAATGATTCGAATCAACAATGAACCGAGTTCGTATC
1 ACTTAATTTCACGATCGGACAATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
* * *
13999929 ACTTAATTTCATGATCGG-CAAATCTAAACGACTCGAATCAACACTGAACTGAGTTCGTATC
1 ACTTAATTTCACGATCGGAC-AATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
13999990 A
1 A
13999991 TTTGGTATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 1 0.02
61 55 0.98
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.28
Consensus pattern (61 bp):
ACTTAATTTCACGATCGGACAATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
Found at i:14000583 original size:46 final size:48
Alignment explanation
Indices: 14000496--14000590 Score: 140
Period size: 50 Copynumber: 2.0 Consensus size: 48
14000486 GTTTAGTTAA
* *
14000496 ATTAGTTTAATTAATTAAGTTGTTTTTAAGTTTCTTTAGTTGCTTAAATC
1 ATTAGGTTAATGAATTAAGTTGTTTTTAA--TTCTTTAGTTGCTTAAATC
14000546 ATTAGGTTAATGAATTAAGTTGTTTTTAA-T-TTTAGTTGCTTAAAT
1 ATTAGGTTAATGAATTAAGTTGTTTTTAATTCTTTAGTTGCTTAAAT
14000591 AATTTTGGCA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
46 15 0.35
47 1 0.02
50 27 0.63
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (48 bp):
ATTAGGTTAATGAATTAAGTTGTTTTTAATTCTTTAGTTGCTTAAATC
Found at i:14000759 original size:20 final size:20
Alignment explanation
Indices: 14000734--14000775 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
14000724 AGCTGTTATA
14000734 AAGTTGAATTAAAGGCCAAC
1 AAGTTGAATTAAAGGCCAAC
14000754 AAGTTGAATTAAAGGCCAAC
1 AAGTTGAATTAAAGGCCAAC
14000774 AA
1 AA
14000776 CTGTTATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (20 bp):
AAGTTGAATTAAAGGCCAAC
Found at i:14003811 original size:37 final size:37
Alignment explanation
Indices: 14003770--14003843 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
14003760 AAATAGCGTG
14003770 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
1 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
14003807 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
1 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
14003844 TTTCTGAGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (37 bp):
AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
Found at i:14008854 original size:15 final size:14
Alignment explanation
Indices: 14008831--14008876 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
14008821 TCTCTCTCGC
*
14008831 TTTCCTTTTCACCTT
1 TTTCATTTTCA-CTT
*
14008846 TTTCATTTTCATTT
1 TTTCATTTTCACTT
14008860 TCTTCATTTTCACTT
1 T-TTCATTTTCACTT
14008875 TT
1 TT
14008877 ATTTTTCTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.11, C:0.24, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCATTTTCACTT
Found at i:14016992 original size:560 final size:560
Alignment explanation
Indices: 14013269--14029917 Score: 23338
Period size: 561 Copynumber: 29.7 Consensus size: 560
14013259 AAGCCTTAAT
* * *
14013269 ATAAGCCTCCCAACTATTTTCCTAACCCTATTAGGAAATCT-AAAAAAACCTAATTACTAATTTA
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
*
14013333 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTACTTGGGCTGAATTTTTTTACATAGGAATTAA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAA
*
14013398 ATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTCTGACAATT
131 ATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATT
*
14013463 TGGCATGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCC
196 TGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCC
*
14013528 TTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGCTTCGTTGATGCTCGTAAC
261 TTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAC
* * * * **
14013593 TGAGATCCAATGCGGCTTAGCTGTAGGATTTGGTTTCCTCAACCAAGATTTCCAAGATTTGAAAT
326 TGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAAT
* * * *
14013658 CTTGATTTTCTTGATTCTTGAAATCGCTCAAAATAGCAAAATTCGACCAAGAGTCGGTTTCTTGA
391 CTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGA
* * *
14013723 TTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTTCTTCGTATACACAACTAAGGTCTT
456 TTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTT
* * * * *
14013788 GCAAATAAATTCTTAAATGGTTCAATTTAGTTTTAAATGC
521 GCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * ** *
14013828 ATAAGCCTCTTAACTATTTTCCTTACCCTATTACAAAATCTAAAAAAAACCTAATTACTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
* *
14013893 AAGGGGAAATTCGACCAAGGCTTTTAATGGGCTGCTTAGGCTGAATTTTTTTTACATAGGAATTA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATTA
* * *
14013958 AATCATAAAGTCTAAAAATTAAACCTAGGTATTTAAAATTTTACAAATTGGGCCACATCGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* *
14014023 TTGGCCGGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTGTTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* * * *
14014088 CTTGCCGTCAAGAAGTTGGGCTCGTAATCCGTTTTCTACCAAAATTGGTTCGTTCATGCTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * * *
14014153 CTGAGGTCCAATACGCCTTAGCTGCAGGGTTCGGTTTCTTGGACCAAGATTTCCAAGATTTAAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
* *
14014218 TCATGATTTTCTTGATTCTTGAAATTGCTCAAAACAGCAAAA-TGTGACCAAGATTCGGTTTCTT
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTG-GACCAAGATTCGGTTTCTT
* * * * * *
14014282 GATTTTCTTGAAATCAAGAAAGTAAATCTTGATTTTATTTTTCCTTCGTTTACGCTACTATGTTC
454 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTC
*
14014347 TTGCTAATAAATTCTTGAATGGTTCCATCTAGTTTTGAACGC
519 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
*
14014389 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACCTAATTATTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
* * *
14014454 CAAGGGGAAATTCGGCCAAGGGTTTCAATGGGCTGCTTGGTCTGAATTTTTTTACATAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* * * *
14014519 AATAATAAAGTCTAAAAATTAAAACTAGGTATTTAATATTTTACTAATTTGGCCACTTTGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
** * * *
14014584 TTGATCTGATTTTCCAGTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTAATTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* * *
14014649 CTTGCTTTCAAGAACTTGGGCTTGTAATCCGTTTTCTATCAAAATTGGTTCGTTGATGCTCGTGA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * * *
14014714 CTGAGGTCCAATGCGCATTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATGTGCAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
* * *
14014779 TCTTGATTTTCTTGATTCATGAAATCGCTCAAAACAGTAAAACCGGACCAAGATTCGGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
* *
14014844 ATTTTCTTGAAATCAAGAAAGTGAATCTTGAATTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
*
14014909 TACTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14014950 ATAAGCCTCCTACCTATTTTCCTAACCCTATTAGGAAATCTCAAAAAAAAACCTAATTATTAATT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT-AAAAAAAAA-CTAATTACTAATT
* * * *
14015015 TGAAGGGGAAATTCGGCCAAGGCTTTCAATGGGCTGCTTGGTCTGAATTTTTTTACATACGAATT
64 TCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATT
* *
14015080 AAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTCACAA
129 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAA
* * * * *
14015145 TTCGGCCTGATTTTCAACTAAGTCAAATTTAAATTTCTTGATTGGGCTTGGAACATCTTATTTGG
194 TTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGG
*
14015210 CCTTGCCTTCAAGAAGTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
259 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * *
14015275 ACTGAGATCCAATGCGCCTTAGCTGTAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTAAA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAA
* * * *
14015340 ATCATGATTTTCTTGATTCTTGAAATCGCTCAAAATAGCAAAA-TGTGAGCAGGATTCGGTTTCT
389 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTG-GACCAAGATTCGGTTTCT
*
14015404 TGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTTCCTTCCTTTACG-AAGCTAAG
453 TGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTC-TTTTTCCTTCGTTTACGCAA-CTAAG
14015468 GTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
516 GTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14015513 ATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAAAAACCTAATTACTAATT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAAT-CTAAAAAAAAA-CTAATTACTAATT
*
14015578 TCAAGGGGAAATTCGACCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATT
64 TCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATT
*
14015643 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTAACAA
129 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAA
* * * *
14015708 TTCGGCCTGATTTTCAACTATGTCTAATTTAAATTTCCTGATCGGGCTTGGAATGTCTTATTGGG
194 TTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGG
14015773 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
259 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * * *
14015838 ATTGAGGTCCAATGCTG-CTTAGCTGCAGGATTGGGTTTCTTGGACAAAGATTTCCAAGATTTGA
324 ACTGAGATCCAATGC-GCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGA
* * *
14015902 AATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTAGAGCAAGATTCGGCTTCT
388 AATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCT
* * *
14015967 TGATTATCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGAAACTAAGGT
453 TGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGT
14016032 CTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
518 CTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14016075 ATAAGCCTCCGAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAAACCTAATTATTAATT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT-AAAAAAAAA-CTAATTACTAATT
* *
14016140 TCAAGGGGAAATTCGGCCAAAGCTTTTAATGGGCTACTTGGGCTGAATTTTTTTACATAGGAATT
64 TCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATT
* *
14016205 AAATCATAAAGTCTAAAAATTAAAACTAGGCATTTAAAATTTTACAAATTGGGACACTTTGACAA
129 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAA
* * *
14016270 TTTGGCCTGATTTTCAACTAAGTCAAATTTAAATTTCCTGATGGGGCTTGGAACATCTTATTGGG
194 TTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGG
*
14016335 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGATTCGTTGATGCTCGTA
259 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * * *
14016400 ATTGAGATCCAATGCGCCTTAGCTGCAAGATTCGGTATCTTGGACCAAGATTTCCAAGATTTGGA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAA
* * *
14016465 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGGCCAAGATCCGGTTTCTT
389 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTT
*
14016530 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCCTTTACGCAACTAAGGTC
454 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTC
14016595 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
519 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
*
14016637 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAGAAA-TAATTACTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
* *
14016701 AAGGGGAAATTCGGCCAAGGGTTTTAATGGGCTGCTTGGTCTGAATTTTTTTTACATAGGAATTA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATTA
*
14016766 AATCATAAAATCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* *
14016831 TTGGCCTGATTTTCGACTAAGTCGAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* * ** * *
14016896 CTTGCCTCCAAGAACTTAGGCTTGTAATCCCACTTT-TACCAAAATTGGTCCGTTGTTGCTCGTA
260 CTTGCCTTCAAGAACTTGGGCTTGTAAT-CCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * * * *
14016960 ACTAAGATCCAAGGCGCCTTAGCTGTAAGATTCGGTTTCTTGGACCAAGATTTCCAATATTTGAA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAA
* * * *
14017025 ATCTTGATTTTCTTTATTCTAGAAATCGCTCAAAACAGCAAAATTGGGCCAAGA-TCGGTTTCTT
389 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTT
* *
14017089 GATTTTCTTGAAAACAAGAAAGTGAATCTTGA-TTTCTTTTTCCTTCGTTCACGAAACTAAGGTC
454 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTC
*
14017153 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGT
519 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
*
14017195 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAACCTAATTACTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
* * * *
14017260 AAAGGGAAATTCGACCAAGGCTTTT-ATAGGCTGCTCGGGCT-AATTTTTTTTACATAGGAATTA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATTA
*
14017323 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTCGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* * * * *
14017388 TTGACCTGATTTTCAACTAAGTTTAATTTAAATTTCCTAATTGGGCTTGGAATGTCTTACTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* *
14017453 CTTGCCTTCCAGAACTTGGGCTTGTAATCCGTTTTC-A-CAAATATTGGTTCGTTGGTGCTCGTA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAA-ATTGGTTCGTTGATGCTCGTA
*
14017516 ACTGAGATCCAATGCGCCTTAGCCGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAA
*
14017581 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAATAGCAAAACTGGACCAAGATTCGGTTTCTT
389 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTT
* * *
14017646 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTATGGAGCTAAGGTC
454 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTC
* * *
14017711 TTGCTAACAAATTCTTGGATGGTTCCATTTAGTATTGAACGC
519 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
14017753 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAAAACCTAATTACTAAT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT--AAAAAAAAA-CTAATTACTAAT
*
14017818 TTCAATGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAAT
63 TTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAAT
* *
14017883 TAAATCATAAAGTCTAAAAATTAAAACTAGGTAATTACAATTTTACAAATTGGGCCACTTTGACA
128 TAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACA
* * *
14017948 ATTTGGCCTGATTTTCAACTAAGTTTAATTTAAATTTCCTGATTCGGCTTAGAACGTCTTATTGG
193 ATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGG
*
14018013 GCCTTGCCTTGAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGT
258 GCCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGT
* * * * * *
14018078 AACTAAGATCCAATACGCCTTAGCTACAAGATTCAGTTTCTTCGACCAAGATTT-CAAGGATTTG
323 AACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAA-GATTTG
* *
14018142 AAATCTGGA-----TT--TTCTTGAAATCGCTCAAAACAGCAAAATTGGACCAAGATAT-GGTTT
387 AAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGAT-TCGGTTT
* * *
14018199 CTTGATTTTCTTGAAAACAAGAAAGTGAATGTTGATTTTCATTTTCCTTCGTATACGCAACTAAG
451 CTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAG
14018264 GTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
516 GTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * * *
14018309 ATAAGCGTCCTAACTATTTTCGTAACCCTATTAGGAAATCTAAAGAAAAACCTAATTATTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAA-AAAAAACTAATTACTAATTT
* * *
14018374 CAAGGGGAAAATCGGCCAAGGCTTTTAATGGGTTGCTTGGGCTGAATTTTTTTGACGTAGGAATT
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTT-ACATAGGAATT
*
14018439 AAATCATAAAGTTTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCA-TTATGACA
129 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTT-TGACA
* *
14018503 ATTTGGCCTGATTTTCAACTAAGTCAAATTTAAGTTTCCTGATTGGGCTTGGAACGTCTTATTGG
193 ATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGG
* * *
14018568 GCCTTGCCTGCAAGAACTTGGG-TTATAATCCGTTTTCTACCAAAATTGGTTCGTTCATGCTCGT
258 GCCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGT
* * * *
14018632 AACTGAGGTCTAATGCGCCTTAGCTGTAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTAA
323 AACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGA
*
14018697 AATCTTGATTTTCTTGATTCATGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCT
388 AATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCT
* * *
14018762 TGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATAGGAAACTAAGGT
453 TGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGT
* *
14018827 CTTGCTAATAAATTCTTGAACGGTTCCATTTGGTTTTGAACGC
518 CTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14018870 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACCTACTTATTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
*
14018935 CAACGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* * * *
14019000 AATCATAAAGTTTAAAAATTAAAACTAGGTATGTAAAATATTACAAATTGGGCCACTTTAACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* * * *
14019065 TTGGCCTGATTTTCAACGAAGTCAAATTTAAATTTCCTGATGGGGCTTGGAACATCTTATTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* *
14019130 ATTGCCTTCAAGAACTTGGGCTTGTAATCCATTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * * * *
14019195 CTGAGATCCAATGCGCCTTAGCTACAAGATCCGGTTTCTTGGGCCAAGATTTCCAAGATATGAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
* **
14019260 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAATA-TGTGACCCGGATTCGGTTTCTT
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTG-GACCAAGATTCGGTTTCTT
* *
14019324 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGT
454 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTC-TTTTTCCTTCGTTTACGCAACTAAGGT
*
14019389 CTTACTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
518 CTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * * *
14019432 ATAA-CCTCCTAACTATTTTCCTAACCCTATTAGAAAATCTAATAAAAACCTAATTATTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
* *
14019496 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGTCTGAATTTTTTTACATAGCAATTAA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAA
* *
14019561 ATCATAAAGCCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTAACAATT
131 ATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATT
* * *
14019626 CGGCCTGATTTTCAACTAAGTCCAATTTAAATTTCCTGGTTGGGCTTGGAACGTCTTATTGGGCC
196 TGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCC
* * *
14019691 TCGCCGTCAAGAACTTGGGTTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAC
261 TTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAC
* *
14019756 TGAGATCCAATGCTCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAAT
326 TGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAAT
* * *
14019821 CTTGA-TTTCTTGATTCTTGAAATTGATCAAAACAGCAAAACTAGACCAAGA------TTC--G-
391 CTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGA
* * * * ** **
14019876 TTTTCTTGAAAACAAGAAAGTGAATCTTAATTTTCTTTTTCCTTCGATTAAGCAA-GAA-AACAA
456 TTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTT
* * * ** ** *
14019939 G-AAAGTGAA-TCTT-AAT-TTTCTTTTTCCTTCGTTTAA-GC
521 GCTAA-TAAATTCTTGAATGGTTCCATTTAGTT--TTGAACGC
* ** * ** * * *****
14019977 AAATAAGGTCTTCCTAA-TAAATTCTTGAATGGTTCTATTTAGTTTTGAACGTATAAGCCTCCTA
1 --ATAA-G-CCTCCTAACTATTTTCCT-AA---CCCTA-TTAG----GAA-ATCTAA--AAAAAA
* * ** *** *** **
14020041 ACTATTTTCCTAA-CCCTATTAGGAAATCTAAAAAAAACCTAATTACTAATTTCAAAGGGAAATT
50 ACTA-ATTACTAATTTC-AAGGGGAAAT-T-----CGGCC-AA-GGCT--TTT--------AA-T
**
14020105 CGACCAAGGCTTTTAATAGGCTGCTTGGGCTAAATTTTTTTACATAGGAATTAAATCATAAAGTC
94 -G-----GGCTGCT--T-GG--GC-T--G---AATTTTTTTACATAGGAATTAAATCATAAAGTC
* * *
14020170 TAAAATTTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTCGACAATTTGACCTGATTT
142 TAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGCCTGATTT
* * * * *
14020235 TCAACTAAGTTTAATTTAAATTTCCTAATTGGGCTTGGAATGTCTTACTGGGCCTTGCCTTCCAG
207 TCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGCCTTCAAG
14020300 AACTTGGGCTTGTAATCCGTTTTC-A-CAAATATTGGTTCGTTGATGCTCGTAACTGAGATCCAA
272 AACTTGGGCTTGTAATCCGTTTTCTACCAAA-ATTGGTTCGTTGATGCTCGTAACTGAGATCCAA
* *
14020363 TGCGCCTTAGCCGCAGGATTCAGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTC
336 TGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTC
*
14020428 TTGATTCTTGAAATCGCTCAAAACAGCAAACCTGGACCAAGATTCGGTTTCTTGATTTTCTTGAA
401 TTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAA
* * *
14020493 AACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTATGGAACTAAGGTCTTGCTAACAAAT
466 AACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAAT
14020558 TCTTGGAA-GGTTCCATTTAGTTTTGAACGC
531 TCTT-GAATGGTTCCATTTAGTTTTGAACGC
* * *
14020588 ATAAGCCTCCTAACTATTTTCCTAACCATATTAGGAAATCTAAAAAAAACCTAATTATTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
* *
14020653 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTTCTTGGGCTGAATTTTTTTACGTAGGAATTAA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAA
* *
14020718 ATCATAATGTTTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATT
131 ATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATT
* *
14020783 CGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTAATTGGGCTTGGAACGTCTTATTGGGCC
196 TGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCC
* * *
14020848 TTGCCTTCAAGAACTTGGGCTTGTAATCTGTTTTCTACCAAAATTGGTTCGTTCATACTCGTAAC
261 TTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAC
* ** * * *
14020913 TGAGGTCCAATGCGCCTTAGCTATAGGGTTCGGTTTCTTGGA-CAATGATTTCCATGATTTAAAA
326 TGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAA-GATTTCCAAGATTTGAAA
* *
14020977 TCTTGATTTTCTTGATTCATGAAATTGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
* *
14021042 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGAAACTAAGGTCT
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
* * *
14021107 TGCTAATAAATTCTTGAACGGTTCCATTTGGTTTTGCACGC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * *
14021148 ATAAGCCTCCTAACTATTTTCCTAACCCTAGTAGGAAATCTAAAAAAAAACCTACTTATTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
* *
14021213 CAACGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTCCATAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* * * *
14021278 AATCATAAAGTTTAAAAATTAAAACTAGGTATGTAAAATATTACAAATTGGGCCACTTTAACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* * * * * * *
14021343 TTGGCCTGAATTTCAACGAAGTCAAATTTAAATTTCCTGATGGGGCTGGGAACATCTTATTAGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* * *
14021408 ATTGCCTTCAAGAACTTGGGCTTGTAATCCATTTTCTACCAAAATTGGTTCATTGATGCTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * * * * * **
14021473 CTGAGATCCAATGCGTTTCC-AAGATTTG-A-AATCTTGATTTCTT-GATTCTTGAA-ATCGCTC
325 CTGAGATCCAATGCG---CCTTAG--CTGCAGGAT-TCGGTTTCTTGGA--C--CAAGATTTC-C
*** * * ** * * ** * * * *
14021533 AA-AACAGCAATATGTGACCAGGATTC-GGTTTCTTGATTTTC-TTGAAAACA--AGAAAGTGAA
379 AAGATTTGAAATCT-TG---A-TTTTCTTGATTCTTGA-AATCGCTCAAAACAGCA-AAACTGGA
* ** *** *** * * ** ** * *** * ***
14021593 TCTTGATTTTCTTT-TTTCCTTCCTTTACGA-AACTAAG-G--TCTTGCTAATAAATTCTTGAAT
437 CCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTG--ATTTTCTTTTTCCTT
* * * * ** * ** ** *
14021653 -GGTT-C-C-ATTTA-G--TT--T--TGAACGCAT-AA-GCCTCCTAACTA-TTTTCGTAACCC
500 CGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCC-ATTTAGTTTT-G-AACGC
* ** ** **** * ** **** ** *
14021703 TATTAGGAAAT-CTAAAAAAAAACCTAA--TTATTA--ATTTC-AAGGGGAAA-T--TCGGCCAA
1 -A-TAAG-CCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAAT-TACTAA
* **** * * ** * * * * ***
14021759 GGGTTTTAATGGGCTGCTT-GGTC-TGAATTTT--T---TTACAT-AG--GAA-TTAAATA-ATA
62 ---TTTCAA-GGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATA
* * ** * ** * * *
14021812 --AAGTCTAAA-AATTAAA-ACTAGGAATT-TAA-TA--T-TTTACAAATTTGGCCACTTTGG-C
123 GGAA-T-TAAATCA-TAAAGTCTAAAAATTAAAACTAGGTATTTA-AAATTTTACAAATTGGGCC
* * * * ** * * * *
14021867 AATTTGATCTGATTT-TCCAG-TAAGTCTAATTTAAAT-T--TCCT-GA-T-------TGGGCTT
184 ACTTTGA-C-AATTTGGCCTGAT-TTTC-AA-CTAAGTCTAAT-TTAAATTTCCTGATTGGGCTT
* * * *
14021918 GGAACGTCTTATTGGGCTTTGCCGTCAAGAAGTTTGGCTT-TCAATCCGTTTTCTACCAAAATTG
243 GGAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGT-AATCCGTTTTCTACCAAAATTG
* * * * *
14021982 GTTCATTGATGCTCGTAACTGAGATCAAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGGCAAA
307 GTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAA
14022047 GATTTCCAAGATTTGAAATCTTGA-TTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAA-TGTG
372 GATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTG-G
*
14022110 ACCAGGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTTCCTT
436 ACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTC-TTTTTCCTT
* *
14022175 CCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
500 CGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14022236 ATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCTAAAAAAAAACCTAATTATTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
*
14022301 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGTCTGAATTTTTTTACATAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* * * * *
14022366 AATAATAGAGTCTAAAAATTAAAACTAGGTATTTAATATTTTACAAATTAGGCTACTTTGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* *
14022431 TTGACCTGATTTTCCACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* *
14022496 CTTGCCGTCAAGAAGTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* *
14022561 CTGAGATCCAATGAGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
*
14022626 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTTGGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
14022691 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
* * *
14022756 AGCTAATATATTCTTGATTGGTTCCATTTAGTTTTGAACGC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
14022797 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAAACCTAATTACTAATT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT-AAAAAAAAA-CTAATTACTAATT
* * * * * **
14022862 TCAAAGCGAAAATTCGGCCAAGGCTTTTAATGGGCTACTTAGGG-TAAAATTCATTACATAGGAA
64 TC-AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTT-GGGCTGAATTTTTTTACATAGGAA
* * * *
14022926 TTAAAACATATAGTCTAAAATTTAAAACTCGGTATTTAAAATTTTACAAAGTT-GGCCACTTTGA
127 TTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAA-TTGGGCCACTTTGA
* * *
14022990 CAATTTGGCCTGACTTTCCACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCGTATT
191 CAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATT
* *
14023055 GGGCCTTGCCGTCAAGAACTTGGGCTTGTAATCTGTTTTCTACCAAAATTGGTTCGTTGATGCTC
256 GGGCCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTC
* * * *
14023120 GTAACTGAGATCCAATGGGCCTTAGCTGCAAGATTCGATATCTTGGACCAAGATTTCCAAGATTT
321 GTAACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTT
* * * *
14023185 GAAATCTTTATTTTCTTGATTCTTGAAATCGCTCAAAAGAGTAAAATTGGACCAAGATTCGGTTT
386 GAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTT
* *
14023250 CTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTTCTTCCTTTACGCAACTAAG
451 CTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAG
* * *
14023315 GTCTTGCTAATAAATTCTTGAATGGTTCTATTTAGTTTTGCACGG
516 GTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * *
14023360 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAGAAAAAACCTAATTATTACTTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAA-AAAAAAACTAATTACTAATTT
* * *
14023425 CATGGGGAAATTCGGCCCAGGCTTTTAATGGGCTGCTTGGTCTGAATTTTTTTACATAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* * * *
14023490 AATAATAAAGTCTAAAAATTAAAACTAGGTATTCAAAATTCTACAAATTGGGCCACTATGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* *
14023555 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACATCTTATGGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* * *
14023620 CTTACCTTCAAGAACTTGGGCTTGTAATCCATTTTCTACCAAAATTGGTTCTTTGATGCTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * * * * * *
14023685 TTGAGGTCCAGTGCGCTTTAGCTACAGGATTCGGTTTCTTGGACCAAGATTTGCATGATTTGAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
14023750 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
* * *
14023815 ATTTTCTTGAAAAGAAGAAAGTGAATCTTGATTTTGTTTTTCCTTCGTTTACACAACTAAGGTCT
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
*
14023880 TGCTAAGAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14023921 ATAAGCCTACTAACTATTTTCCTAACCCTATTAGCAAATCTAAAAAAAAAAAACTAATTACTAAT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT---AAAAAAAAACTAATTACTAAT
* * * **
14023986 TTCAAAGGGGAAATTCGGCCAAGGCTTTTCATGGGCTACTTGGGCTGAAATTCATTACATAGGAA
63 TTC-AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAA
* * *
14024051 TTAAAAT-ATAAAGTCTAAAATTTAAAACTCGGTATTTAAAATTTTACAAATTTGGCCACTTTGA
127 TT-AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGA
* * *
14024115 CAATTGGGCCTGATTTTCCACTAAGTCTAATTTAAATTTCCTGATTTGGCTTGGAACGTCTTATT
191 CAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATT
*** * ** * *
14024180 GGGCCTTGAAGTCAAGAACTTGGGCTTGAAATCTATGTTCTA-AAAAATTGGTTCGTTGATGCTC
256 GGGCCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTC
* *
14024244 GTAACTGAGACCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTT
321 GTAACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTT
* * *
14024309 GAAATCTTGAATTTCTTGATTCTTGAAATCGCTCAAAGCAGCAAAACTGGACCAAGATTTGGTTT
386 GAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTT
14024374 CTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAG
451 CTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAG
*
14024439 GTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACAC
516 GTCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14024484 GTAAGCCTCCTAACTATTTCCCTAACCCTATTAGGAAATCTAAAAAAAAACCTAATTACTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
* * *
14024549 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTCCTTGGTCTGAATTTTTTTACACAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
*
14024614 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTTGGCCACTTTGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
*
14024679 TCGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
*
14024744 CTTGCCGTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * * * *
14024809 TTGAGGTCCTATGCGCTTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCATGATTTGAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
*
14024874 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTTGGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
*
14024939 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCC
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
*
14025004 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACAC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * *
14025045 GTAAGCCTCCCAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACCTAATTATTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
*
14025110 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGTCTGAATTTTTTTTACATAGGAATT
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATT
*
14025175 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTATGACAA
129 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAA
* * *
14025240 TTCGGTCTGATTTTCAACTAAGTCTAATTTAAATTTCTTGATTGGGCTTGGAACGTCTTATTGGG
194 TTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGG
*
14025305 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGCA
259 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * * * * *
14025370 ATTGAGGTCCATTGCGCTTTAGGTGCAGGATTCGGTTTCTTGGA-CAAGGATTTCCATGATTTGA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAA-GATTTCCAAGATTTGA
* * *
14025434 AATCTTGATTTTCTTGATACTTGAAATCGCTCAAAATAGCAAAATTGGACCAAGATTCGGTTTCT
388 AATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCT
* * * *
14025499 TGTTTTTGTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCTTTCGTATACGCAACTAAGGT
453 TGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGT
* * *
14025564 CTTACTACTAAATTCTTGAATGGTTCCATTTAGTTTTAAACGC
518 CTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14025607 ATAAGCCTCCTAATTATTTTCCTAAGCCTATTAGGAAATCTAAAAAAAAATCTAATTACTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
* **
14025672 GAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGTTCTGAATTTTTTTTACATAGGAATT
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATT
14025737 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAA
129 AAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAA
* * *
14025802 TTCGGTCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGTTTGGAACGTCTTATTGGG
194 TTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGG
*
14025867 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGCA
259 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * * * * * *
14025932 ATTGAGGTCCATTGCGCTTTAGTTGCAGGATTCAGTTTCTTGGA-CAAGGATTTCCATGATTTGA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAA-GATTTCCAAGATTTGA
* * *
14025996 AATCTTGATTTTCTTGATACTTGAAATCGCTCAAAATAGCAAAATTGGACCAAGATTCGGTTTCT
388 AATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCT
* * *
14026061 TGTTTTTGTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCAACTAAGGT
453 TGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGT
* * * * *
14026126 CTTACTACTATATTCTTGAATGGTTCCATTTAGTTTTAAACGG
518 CTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
*
14026169 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACCTAGTTACTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA-CTAATTACTAATTT
* * * *
14026234 GAA-GGGAAATTCGGCCAAGGCTTTTATTGAGCTGCTTGGGTTGAATTTTTTTACATAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* *
14026298 AATCATAAAGTCTACAAATTAAAACTAGGTACTTAAAATTTTACAAATTGGGCCACTTTGACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
** *
14026363 TCAGCCTGATTTTCAACTAAGTCTAATTTAAATTTCTTGATTGGGCTTGGAACGTCTTATTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* *
14026428 CTTGCCTTCAAGAACTTGGGTTTGTAATACGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * * * * *
14026493 TTGAGGTCCAATGCGCTTTAGCTGCAGGATTCAGTTTCTTGGACAAAGATTTCCATGATTTGAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
* * **
14026558 TCTTGATTTTCTTGATTCTTGAAATTGCTCAAAACAACAAAACTGGACCAAGATTAAGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
*
14026623 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCAACTAAGGTCT
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
* *
14026688 TGGTAATAAATTCTTAAATGGTTCCATTTAGTTTTGAACGC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * *
14026729 ATAAGCCTCCTAACAATTTTCCTAACCCTATTAGGAAATCTAAAAAAAACCTAATTATTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
* *
14026794 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGTTGCTTGGTCTGAATTTTTTTTACATAGGAATTA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATTA
* *
14026859 AATCATAAAGTCTAAAAATTATAACTAGGTATGTAAAATTTTACAAATTGGGCCA-TTATGACAA
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTT-TGACAA
* *
14026923 TTTGGCCTGATTTTCAACTAAGTCAAATTTAAGTTTCCTGATTGGGCTTGGAACGTCTTATTGGG
194 TTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGG
* *
14026988 CCTTGCCTGCAAGAACTTGGG-TTGTAATCCGTTTTCTACCAAAATTGGTTCGTTCATGCTCGTA
259 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * * * *
14027052 ACTGAGGTCTAATGCGCCTTAGCTGTAGGATTCGGTATCTTGGACCAAGATTTCCAAGATTTAAA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAA
* * *
14027117 ATCTTGATTTTCTTGATTCATGAAATCGTTCAAAACAGCAAAACTGGACCAAGATTCGATTTCTT
389 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTT
* *
14027182 GATTTTCTTGAAAACAAGAAAGTGAATCATGATTTTCTTTTTCCTTTGTTTACGCAACTAAGGTC
454 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTC
* * *
14027247 TTGCTAATAAATTCTTGAATGGTTTCATCTAGTTTTGAACGA
519 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
*
14027289 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAACCTAATTACTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
* * *
14027354 AAGGGGAAGTTCGGCCAAGGCTTTTAAAGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAG
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAA
*
14027419 ATCATAAAGTCTAAAAATTAAAACTAGGTATGTAAAATTTTACAAATTGGGCC-CTTATGACAAT
131 ATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTT-TGACAAT
* * *
14027483 TTGGCCTGATTTTCAACTAAGTCAAACTTAAATTTCCTGATTGGGCTTGGAACATCTTATTGGGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* * *
14027548 TTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTCATGCTTGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * *
14027613 CT--G-----AT-----TTA-----A--A------ATCTTGGACCAAGATTTCCCAGATTTAAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
* *
14027653 TCTTGATTTTCTTGATTCATGAAATCGCTCAAAACAGCAAAACTGGACCAATATTCGGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
* * * *
14027718 ATTTTCTTGAAATCAAGAAAGTGAATCTTGATTTTCTTTTTCCTTTGTTTACGCAACTATGTTCT
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
* * *
14027783 TGCTAATAAATTCTTGAATGGTTCTATCTAGTTTTCAACGC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
*
14027824 ATAAGCCTCCTAACTATTTTCCTAACCCTATTGGGAAATCTAAAAAAAAA-TAATTACTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
*
14027888 AAGGGGAAATTCGGCCAAGGCTTTTAAAGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAA
66 AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAA
*
14027953 ATCATAAAGTCGAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATT
131 ATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATT
* * * * *
14028018 TGGCCTGATTTTCAACCAAGTCAAATTTAAATTTCCTAATTGGGCTTGGAACGTTTTATTTGGCC
196 TGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCC
14028083 TTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAC
261 TTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAC
* **
14028148 TGAGATCCAATTCGCCTTAGCTGCAATATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAAT
326 TGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAAT
* * *
14028213 CTTGATTTTCTTGATTCTTGAAATCGCTGAAAATAGCAAAACTGGACCAAGATTCGGTTTCTTCA
391 CTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGA
* *
14028278 TTTTCTTGAAATCAAGAAAGTGAATCTTGATTTT-TTTTTGCTTCGTTTACGCAACTAAGGTCTT
456 TTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTT
*
14028342 GCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACAC
521 GCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14028382 ATAAGCCTCCAAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAATCTAATTACTAATTTC
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
** *
14028447 AAGGGGAAATTCGGCCACA-GCTTTTAATGGGCTGCTTGGTTTGAAATTTTTTACATAGGAATTA
66 AAGGGGAAATTCGGCCA-AGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* *
14028511 AATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTAACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* * * *
14028576 TCGGCCTGATTTTCAACTAAGTCTATTTTAAATTTCCTAATTGGGCTTGGAACATCTTATT-GGC
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGC
* * *
14028640 CTTGCCTTCAAGAAATTGGGCTTGTAATCCGTTTTCTCCCAAAATTGGTTCGTTGATACTCGTAA
260 CTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAA
* * *
14028705 CTGAGGTCCAATGCGCCTTAGCTGCAGGATTTGGTTTCTTGGACCAAGATTTCCAAGATGTGAAA
325 CTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAA
* *
14028770 TCTTGATTTTCTTGATTCATGAAATCTCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
390 TCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTG
* * *
14028835 ATTTTCTTGAAATCAATAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCGACTAAGGTCT
455 ATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCT
*
14028900 TGCTAATAAATTCTTGAATGGTTCCATTGAGTTTTGAACGC
520 TGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* *
14028941 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTATAAAAAAACCTAATTATTAATTT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTA-AAAAAAAACTAATTACTAATTT
* *
14029006 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGTCTGATTTTTTTTACATAGGAATTA
65 CAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTA
* * *
14029071 AATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGGCACTTTAACAAT
130 AATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAAT
* * **
14029136 TCGGCCTGATTTTCAACTAAGTCTATTTTAAATTTCCTGATTGGGCTTGGAATATCTTAATT-GG
195 TTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTT-ATTGGG
*
14029200 CCTTGCCTTCAAGAACTTGGGTTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
259 CCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTA
* * * * *
14029265 ATTGAGGTCCAATACGCTTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCATGATTTGAA
324 ACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAA
14029330 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTT
389 ATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTT
* *
14029395 GATTTTCTTGAAATCAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTA
454 GATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTC
* *
14029460 TTGCTAATAAATTCATGAATGGTTCCATTTAGTTTTGAACGG
519 TTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
* * *
14029502 ATAAGCCTCCTAACTATTTTTCTAACCCTATTAGGAAATAAC-AAAAAAAACCTTATTACTAATT
1 ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAAT--CTAAAAAAAAACTAATTACTAATT
* * * **
14029566 TCAAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTACTTGGGCTAAAATGCTTTACATAGGAAT
64 TC-AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAAT
* * * *
14029631 TAAAACATAAAGTCTAAAATTTAAAACTCGGTATTTAAAATTTTACAAATTTGGCCACTTTGACA
128 TAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACA
*
14029696 ATTTGGCCTGATTTTCCACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGG
193 ATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGG
*
14029761 GCCTTGCCGTT-AAGAACTTGGGCTTGTAATCCTTTTTCTACCAAAATTGGTTCGTTGATGCTCG
258 GCCTTGCC-TTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCG
* * * *
14029825 TAACTGAGATCTAATGAGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCGAAGATTTG
322 TAACTGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTG
*
14029890 AAATCTTGATTTCCTTGATTCTTGAAAT
387 AAATCTTGATTTTCTTGATTCTTGAAAT
14029918 NNNNNNNNNN
Statistics
Matches: 14426, Mismatches: 1348, Indels: 629
0.88 0.08 0.04
Matches are distributed among these distances:
516 5 0.00
517 17 0.00
518 13 0.00
519 10 0.00
520 5 0.00
521 10 0.00
522 14 0.00
523 10 0.00
524 12 0.00
525 5 0.00
526 4 0.00
527 93 0.01
529 2 0.00
530 1 0.00
531 13 0.00
532 1 0.00
533 14 0.00
534 265 0.02
535 267 0.02
536 33 0.00
537 11 0.00
538 6 0.00
539 7 0.00
540 9 0.00
541 14 0.00
542 6 0.00
543 4 0.00
544 8 0.00
545 9 0.00
546 20 0.00
547 18 0.00
548 16 0.00
549 29 0.00
550 50 0.00
551 13 0.00
552 32 0.00
553 37 0.00
554 176 0.01
555 172 0.01
556 316 0.02
557 225 0.02
558 571 0.04
559 992 0.07
560 2466 0.17
561 3367 0.23
562 2847 0.20
563 1414 0.10
564 232 0.02
565 9 0.00
566 16 0.00
567 11 0.00
568 15 0.00
569 16 0.00
570 23 0.00
571 4 0.00
572 3 0.00
575 1 0.00
576 1 0.00
577 2 0.00
580 2 0.00
581 1 0.00
582 1 0.00
585 3 0.00
587 7 0.00
588 2 0.00
589 3 0.00
590 2 0.00
592 1 0.00
593 1 0.00
594 1 0.00
595 13 0.00
596 9 0.00
597 90 0.01
598 216 0.01
599 3 0.00
603 4 0.00
604 5 0.00
606 1 0.00
607 60 0.00
608 9 0.00
609 8 0.00
610 10 0.00
611 2 0.00
612 10 0.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (560 bp):
ATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACTAATTACTAATTTC
AAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAA
ATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATT
TGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCC
TTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAC
TGAGATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAAT
CTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGA
TTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTT
GCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGC
Found at i:14019954 original size:48 final size:48
Alignment explanation
Indices: 14019883--14019978 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
14019873 TCGTTTTCTT
14019883 GAAAACAAGAAAGTGAATCTTAATTTTCTTTTTCCTTCGATTAAGCAA
1 GAAAACAAGAAAGTGAATCTTAATTTTCTTTTTCCTTCGATTAAGCAA
*
14019931 GAAAACAAGAAAGTGAATCTTAATTTTCTTTTTCCTTCGTTTAAGCAA
1 GAAAACAAGAAAGTGAATCTTAATTTTCTTTTTCCTTCGATTAAGCAA
14019979 ATAAGGTCTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (48 bp):
GAAAACAAGAAAGTGAATCTTAATTTTCTTTTTCCTTCGATTAAGCAA
Found at i:14055904 original size:561 final size:561
Alignment explanation
Indices: 14054691--14060460 Score: 9083
Period size: 561 Copynumber: 10.3 Consensus size: 561
14054681 NNNNNNNNNN
* * * * * *
14054691 ATCCTTTTTCTACCAAAATTGGTTCATTGATGCTCGTAACTGAGATCTAATGAGCCTTAGCTGCA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
* * * * *
14054756 AGATTCGGTTTCTTGGACCAAGATTTCGAAGATTTGAAATCTTGATTTTCTTTATTCTTGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
* *
14054821 GCTCAAAACAGCAAAACTAGACCAAGATTTGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* *
14054886 CTTGATTGTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATGCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
* *
14054951 TTTAGTTTTGAACACATAAGCCTCCAAACTATTTTCCTAACCCTATTAGGAAATCT-AAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
* * * * * * *
14055015 TCTAATTACTAATTTTAAGGGGAAATTCAGTCACGGCTTTTAATGGGCTGCTTGGTCTGAAATTT
326 CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
*
14055080 TTTACATAGGAATTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
391 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
* * *
14055145 GGCCACTTTAACAATTCGGCCTGATTTTCAACTAAGTCTATTTTAAATTTCCTGATTGGGCTTGG
456 GGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGG
*
14055210 AACATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
521 AACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* * * *
14055251 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCACGTAATTGAGGTCCAATACGCTTTAGCTACA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
* * *
14055316 GGGTTCGGTTTCTTGGACCAAGATTTCGATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
* *
14055381 GCTCAAAACAGAAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAATGTGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* *
14055446 CTTGCTTTTCTTTTTCCTTCGTTTACGCAACTAAGGTATTGCTAATAAATTCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
* * *
14055511 TTTAGTTCTGAATGCATAAGCCTCCTAACTATTTTCCTAACCCTATTGGGAAATCT-AAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
* * * * * * *
14055575 CCTAATTACTAATTTTGAAGGGGAAATTCGGCCAAGGTTTTTAATGGGCTACTTGTGCTAAAATG
326 CCTAATTACTAA-TTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTT
* * * * *
14055640 CTTTACATAGGAATTAAAACAAAAAGTCTAAAATTTAAAACTCA-GTATTTAAAATTGTACAAAA
390 TTTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACT-AGGTATTTAAAATTTTAC-AAA
*
14055704 TT-GGCCACTTTGACAATTTGGCCTGATTTTCCACTAAGTCTAATTTAAATTTCCTGATTGGGCT
453 TTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCT
14055768 TGGAACGTCTTATTGGGCCTTGCCGTT-AAGAACTTGGGCTTGTA
518 TGGAACGTCTTATTGGGCCTTGCC-TTCAAGAACTTGGGCTTGTA
* * * * *
14055812 ATCCTTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGATCTAATGAGCCTTAGCTGCA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
* * * *
14055877 AGATTCGGTTTCTTGGACCAAGATTTCGAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
* *
14055942 GCTCAAAACAGCAAAACTGGACCAAGATTTGGTTTCTTGATTTTCTTGAAAACAAGAAAATGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* *
14056007 CTTGATTTTCTTTTCCCTTCGTTTACGCAACTAAGGTCTTCCTAATAAATTCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
* * *
14056072 TTTAGATTTGAACACATAAGCCTCCAAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
* * * * *
14056137 TCTAATTACTAATTTCAAGGGGAAATTCGGCCAGGGCTTTTAATGGGCTGCTTGGTCTAAAATTT
326 CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
*
14056202 TTTACATAGGAATTAAATAATAAAGTCTAAAAAATTAAAACTAGGTATTTAAAATTTTACAAATT
391 TTTACATAGGAATTAAATCATAAAGTCT-AAAAATTAAAACTAGGTATTTAAAATTTTACAAATT
* * *
14056267 GGGCCACTTTAACAATTCGGCCTGATTTTCAACTAAGTCTATTTTAAATTTCCTGATTGGGCTTG
455 GGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTG
*
14056332 GAACATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
520 GAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* *
14056374 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAATTGAGGTCCAATGCGCTTTGGCTGCA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
14056439 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
* *
14056504 GCTCAAAACAGCAAAACTGGACCAAGATTTGGTTTCTTGATTTTCTTGAAAACAAGAAAATGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* *
14056569 CTTGATTTTCTTTTCCCTTCGTTTACGCAACTAAGGTCTTCCTAATAAATTCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
* * *
14056634 TTTAGATTTGAACACATAAGCCTCCAAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
* * *
14056699 TCTAATTACTAATTTCAAGGGGAAATTCGGCCAGGGCTTTTAATGGGCTGCTTGGTCTGAATTTT
326 CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
* *
14056764 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTTAAACCAGGTATTTAAAATTTTACAAA-TG
391 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
*
14056828 GGCCACTTTGACAATTCGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGG
456 GGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGG
*
14056893 AACATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
521 AACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* *
14056934 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAATTGAGGTCCAATGCGCTTTGGCTGCA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
14056999 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
14057064 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* ** * *
14057129 CTTGATTTTCTTTTTCCTTTGTACATGCAACTAAGGTCTTACTAATAAATTCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
*
14057194 TTTAGTTTTGAACACATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
* * **
14057259 CCTAATTATTAATTTCGAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGTTTGAATTTT
326 CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
* * * *
14057324 TTTACATAGGAACTAAATCATAAAGTATAAAAATTAAAACTCGGTATCTAAAATTTTACAAATTG
391 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
* * * **
14057389 GTCCACTTTGACAATTCGGCCTAATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTAT
456 GGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGG
*
14057454 AACGTCTTATTGGGCCTTGCCTTCTAGAACTTGGGCTTGTA
521 AACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* *
14057495 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAATTGAGGTCCAATGCGCTTTAGCTACA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
*
14057560 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATT
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
14057625 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* * **
14057690 CTTTATTTTCTGTTTCCTTCGTAGACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
* *
14057755 TTTAGTTGTGAACGCATAAGCGTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
* * *
14057820 CCTAATTATTAATTTCATGGGGAAATTCGGCCAGGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
326 CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
* *
14057885 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTGAAAATTTTACAAAATG
391 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
* *
14057950 GGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTGTAATTTAAATTTCCTGATTGGGCTTGT
456 GGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGG
*
14058015 AACGTCTTATTGGGCCTTGCCTTCCAGAACTTGGGCTTGTA
521 AACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* * *
14058056 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAAGTGAGGTCCAATGCGGTTTAGCTGTA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
* *
14058121 GGATTCGGTTTCTAGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATA
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
* * * * *
14058186 GCTCAAAACAGCAAAATTGGACCAAGATTCTGTTTCTTGTTTTTGTTGAAAACAAGACAGTGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
*
14058251 CTTGAATTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
** * *
14058316 GCTAGTTGTGAACGCAGAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT-AAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
**
14058380 --TAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAAAGGCTGCTTGGGCTGAATTTT
326 CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
** * *
14058443 TTTACATAGGAATCGAATCATAAAGTCTAAAAATTTAAACTAGGTATGTAAAATTTTACAAATTG
391 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
* * *
14058508 GGCC-CTTATGACAATTTGGCCTTATTTTCAACTAAGTCAAATTTAAATTTCTTGATTGGGCTTG
456 GGCCACTT-TGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTG
14058572 GAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
520 GAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* * *
14058614 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTTGTAACTGAGGTCCAATGAGCCTTAGCTGCA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
* * * *
14058679 GGATTCGGTTTCGTGGACAAAGATTTCGAAGATTTGAAATCTTGATTTTCTTGATTCATGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
* * *
14058744 GCTAAAAACAACAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAATCAAGAAAGTGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
*
14058809 CTTGATTTTCTTTTTCCTTCGTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
196 CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
* *
14058874 TCTAGTTTTGAACGCATAAACCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT-AAAAAAAA
261 TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
** *
14058938 CCTAATTTTTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTG
326 CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
* * *
14059003 TTTACATAGAAATTAAATTATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACACATTG
391 TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
* * *
14059068 GGCCACTTTGACAATTTGGCTTGATTTTCAACTAAGTCTTATTTAAATTTCTTGATTGGGCTTGG
456 GGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGG
* *
14059133 AACATCTTATTTGGCCTTGCCTTCAAGAACTTGGGCTTGTA
521 AACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* ** * * * *
14059174 TTCATTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGATTCAATGCACCTTAGCTTGC
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGC-TGC
* * * * * *
14059239 AAGATTCGGTTTCTTGGACCAAGATTTCTATGATTTGAAATCTTGCTTTTCTTGGTTCCTGAAAT
65 AGGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAAT
* * * *
14059304 CGCTCAAAACAGTATAGCTGGACCAAGATTCGGTTTCTTGATTTTCTTGACAACAAGAAAGTGAA
130 CGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAA
* * *
14059369 TCTTGATTTTCTTTTTCCTTCATTTACGCAACTACGGTCTTGCTGATAAATTCTTGAATGGTTCC
195 TCTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCC
*
14059434 ATCTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT--AAAAAA
260 ATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAA
*
14059497 A--TAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAAGGGCTGCTTGGGCTGAATTT
325 ACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTT
*
14059560 TTTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATGTAAAATTTTACAAATT
390 TTTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATT
* *
14059625 GGGCC-CTTATGACAATTTGGCCTTATTTTCAACTAAGTCAAATTTAAATTTCCTGATTGGGCTT
455 GGGCCACTT-TGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTT
* * *
14059689 AGAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGACCTGTA
519 GGAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* * *
14059732 ATCCGTTTTCTACCTAAATTGGTTCGTTCATGCTCGTAATTGAGGTCCAATGCGCTTTAGCTGCA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
* *
14059797 GGATTCGATTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCCTGATTCTTGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
* * * * **
14059862 GCTCAAAACAGCAAAATTTGACCAATATTCGGTTTCTTGATTTTCTTGAAATCAAGATGGTGAAT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
*
14059927 CTTGATTTTCTTTTTCC-TCTGTTTACGCAACCAAGGTCTTGCTATGCTAATAAATTCTTGAATG
196 CTTGATTTTCTTTTTCCTTC-GTTTACGCAACTAAGG---T-CT-TGCTAATAAATTCTTGAATG
* *
14059991 GTTCCATCTAGTTTTGAACGCATAAGCCTCTTAACTATTTTCCTAACCCTATTAGGAAATCTAAA
255 GTTCCATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCT-AA
* * *
14060056 AAAAAAACCTAATTATTAATTTCAAGGGGAAATTTGGCCAAGGCTTTTAATGAGCTGCTTGGGCT
319 AAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCT
14060121 GAA-TTTTTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTA
384 GAATTTTTTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTA
*
14060185 CAAAGTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTG
449 CAAATTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTG
* * *
14060250 GGTTTGGAACTTCTTATTGGGTCTTGCCTTCAAGAACTTGGGCTTGTA
514 GGCTTGGAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
* * * * *
14060298 ATCCGTTTTCTACCAAAATTAGTTCGTTGATACTCGTAACTGAGATCCAATGCGCCTTACCTGCA
1 ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
* * *
14060363 AGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
66 GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
**
14060428 GCTCAAAACAGCAAAGTTGGACCAAGATTCGGT
131 GCTCAAAACAGCAAAACTGGACCAAGATTCGGT
14060461 GATACGCCCT
Statistics
Matches: 4824, Mismatches: 358, Indels: 50
0.92 0.07 0.01
Matches are distributed among these distances:
556 2 0.00
557 152 0.03
558 774 0.16
560 1126 0.23
561 1762 0.37
562 636 0.13
565 7 0.00
566 307 0.06
567 58 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (561 bp):
ATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAGGTCCAATGCGCTTTAGCTGCA
GGATTCGGTTTCTTGGACAAAGATTTCCATGATTTGAAATCTTGATTTTCTTGATTCTTGAAATC
GCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAAT
CTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCA
TTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAA
CCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTT
TTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTG
GGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGG
AACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTA
Found at i:14064870 original size:15 final size:15
Alignment explanation
Indices: 14064850--14064904 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
14064840 ACTCTCCTCA
*
14064850 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
14064865 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
14064880 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
14064894 TTCTTTT-TCTC
1 TTCTTTTCTCTC
14064905 AATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:14069009 original size:11 final size:10
Alignment explanation
Indices: 14068993--14069130 Score: 60
Period size: 11 Copynumber: 12.7 Consensus size: 10
14068983 AGCAATTAAC
14068993 CAACATTCGAA
1 CAACATT-GAA
*
14069004 CAACATTTAA
1 CAACATTGAA
*
14069014 TCAACAATTGGA
1 -CAAC-ATTGAA
*
14069026 CAACATTCAA
1 CAACATTGAA
*
14069036 TAACATTTGAA
1 CAACA-TTGAA
* *
14069047 CAGCATTTAA
1 CAACATTGAA
*
14069057 TCAACAATTGGA
1 -CAAC-ATTGAA
*
14069069 CAACATTCAA
1 CAACATTGAA
*
14069079 TCAACATTTGGA
1 -CAACA-TTGAA
*
14069091 CAACATTTAA
1 CAACATTGAA
*
14069101 TCAACAATTGGA
1 -CAAC-ATTGAA
* *
14069113 CATCATTCAA
1 CAACATTGAA
14069123 TCAACATT
1 -CAACATT
14069131 TGGATAGCAT
Statistics
Matches: 92, Mismatches: 25, Indels: 20
0.67 0.18 0.15
Matches are distributed among these distances:
10 25 0.27
11 52 0.57
12 15 0.16
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (10 bp):
CAACATTGAA
Found at i:14069100 original size:44 final size:44
Alignment explanation
Indices: 14068993--14069172 Score: 272
Period size: 44 Copynumber: 4.1 Consensus size: 44
14068983 AGCAATTAAC
*
14068993 CAACATTCGAACAACATTTAATCAACAATTGGACAACATTCAAT
1 CAACATTTGAACAACATTTAATCAACAATTGGACAACATTCAAT
*
14069037 -AACATTTGAACAGCATTTAATCAACAATTGGACAACATTCAAT
1 CAACATTTGAACAACATTTAATCAACAATTGGACAACATTCAAT
* *
14069080 CAACATTTGGACAACATTTAATCAACAATTGGACATCATTCAAT
1 CAACATTTGAACAACATTTAATCAACAATTGGACAACATTCAAT
* * * * *
14069124 CAACATTTGGATAGCATTTAATCAACAATTGGACAGCATCCAAT
1 CAACATTTGAACAACATTTAATCAACAATTGGACAACATTCAAT
14069168 CAACA
1 CAACA
14069173 ATTTACTTCA
Statistics
Matches: 126, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
43 41 0.33
44 85 0.67
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27
Consensus pattern (44 bp):
CAACATTTGAACAACATTTAATCAACAATTGGACAACATTCAAT
Found at i:14069173 original size:22 final size:22
Alignment explanation
Indices: 14069003--14069175 Score: 213
Period size: 22 Copynumber: 7.9 Consensus size: 22
14068993 CAACATTCGA
*
14069003 ACAACATTTAATCAACAATTGG
1 ACAACATTCAATCAACAATTGG
* *
14069025 ACAACATTCAAT-AACATTTGA
1 ACAACATTCAATCAACAATTGG
* *
14069046 ACAGCATTTAATCAACAATTGG
1 ACAACATTCAATCAACAATTGG
*
14069068 ACAACATTCAATCAACATTTGG
1 ACAACATTCAATCAACAATTGG
*
14069090 ACAACATTTAATCAACAATTGG
1 ACAACATTCAATCAACAATTGG
* *
14069112 ACATCATTCAATCAACATTTGG
1 ACAACATTCAATCAACAATTGG
* * *
14069134 ATAGCATTTAATCAACAATTGG
1 ACAACATTCAATCAACAATTGG
* *
14069156 ACAGCATCCAATCAACAATT
1 ACAACATTCAATCAACAATT
14069176 TACTTCACTT
Statistics
Matches: 128, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
21 17 0.13
22 111 0.87
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (22 bp):
ACAACATTCAATCAACAATTGG
Found at i:14070058 original size:42 final size:43
Alignment explanation
Indices: 14069961--14070062 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 43
14069951 GTCAACGTCC
* * * * *
14069961 CAGACGTGGTCTTACATGTAATCAAATAATGATGCCATTGTCT
1 CAGACATGGTCTTACACGTAATCAAATAACGACGCCAATGTCT
* *
14070004 CAGACAGGGTCTTACACGTAATCACAT-ACGACGCCAATGTCT
1 CAGACATGGTCTTACACGTAATCAAATAACGACGCCAATGTCT
*
14070046 TAGACATGGTCTTACAC
1 CAGACATGGTCTTACAC
14070063 ATAAATCTCA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 27 0.54
43 23 0.46
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
CAGACATGGTCTTACACGTAATCAAATAACGACGCCAATGTCT
Found at i:14071775 original size:43 final size:43
Alignment explanation
Indices: 14071718--14071885 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
14071708 ATTTTTTTAT
14071718 AAACGCCGCTAAAGAAC-GGTACTTTTAGCGGCGTTTGTGATAA
1 AAACGCCGCTAAAGAACAGGTAC-TTTAGCGGCGTTTGTGATAA
* * * *
14071761 AAACGCCGGTAAAGATCATGTTCTTTAGCGGCGTTTGTGATAA
1 AAACGCCGCTAAAGAACAGGTACTTTAGCGGCGTTTGTGATAA
* * ** * * *
14071804 AAGCGCCGCTACAGGTCATGTTCTTTAGCGGCATTTGTGATAA
1 AAACGCCGCTAAAGAACAGGTACTTTAGCGGCGTTTGTGATAA
* * * * * * *
14071847 AAGCTCCGCTAATGATCATGTTCTTTAGCGGCATTTGTG
1 AAACGCCGCTAAAGAACAGGTACTTTAGCGGCGTTTGTG
14071886 GGTAAAGCAC
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 108 0.97
44 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACAGGTACTTTAGCGGCGTTTGTGATAA
Found at i:14071866 original size:86 final size:85
Alignment explanation
Indices: 14071740--14071925 Score: 257
Period size: 86 Copynumber: 2.2 Consensus size: 85
14071730 AGAACGGTAC
* * *
14071740 TTTTAGCGGCGTTTGTGATAAAAACGCCGGTAAAGATCATGTTCTTTAGCGGCGTTTGT-GATAA
1 TTTTAGCGGCATTTGTGATAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGAT-A
* *
14071804 AAGCGCCGCTACAGGTCATGT
65 AAGCACCGCTAAAGGTCATGT
* * * *
14071825 TCTTTAGCGGCATTTGTGATAAAAGCTCCGCTAATGATCATGTTCTTTAGCGGCATTTGTGGGTA
1 T-TTTAGCGGCATTTGTGATAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGATA
14071890 AAGCACCGCTAAAGGTCATGT
65 AAGCACCGCTAAAGGTCATGT
14071911 TTTATAGCGGCATTT
1 TTT-TAGCGGCATTT
14071926 TTTCATATAA
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
85 3 0.03
86 84 0.94
87 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (85 bp):
TTTTAGCGGCATTTGTGATAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGATAA
AGCACCGCTAAAGGTCATGT
Found at i:14071893 original size:43 final size:42
Alignment explanation
Indices: 14071741--14071925 Score: 212
Period size: 43 Copynumber: 4.3 Consensus size: 42
14071731 GAACGGTACT
* * * *
14071741 TTTAGCGGCGTTTGTGATAAAAACGCCGGTAAAGATCATGTTC
1 TTTAGCGGCATTTGTGATAAAAGCACCGCT-AAGATCATGTTC
* * *
14071784 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTACAGGTCATGTTC
1 TTTAGCGGCATTTGTGATAAAAGCACCGCTA-AGATCATGTTC
*
14071827 TTTAGCGGCATTTGTGATAAAAGCTCCGCTAATGATCATGTTC
1 TTTAGCGGCATTTGTGATAAAAGCACCGCTAA-GATCATGTTC
* *
14071870 TTTAGCGGCATTTGTGGGT-AAAGCACCGCTAAAGGTCATGTT-
1 TTTAGCGGCATTTGT-GATAAAAGCACCGCT-AAGATCATGTTC
14071912 TTATAGCGGCATTT
1 TT-TAGCGGCATTT
14071926 TTTCATATAA
Statistics
Matches: 128, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
42 4 0.03
43 120 0.94
44 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCATTTGTGATAAAAGCACCGCTAAGATCATGTTC
Found at i:14076633 original size:14 final size:14
Alignment explanation
Indices: 14076614--14076640 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14076604 ACAGTTTCCA
14076614 ATATCCTTTCAAAC
1 ATATCCTTTCAAAC
14076628 ATATCCTTTCAAA
1 ATATCCTTTCAAA
14076641 ATACCTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATCCTTTCAAAC
Found at i:14085595 original size:18 final size:18
Alignment explanation
Indices: 14085572--14085608 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
14085562 CCATATGTGG
14085572 ACGGATATGTGATGGCTC
1 ACGGATATGTGATGGCTC
14085590 ACGGATATGTGATGGCTC
1 ACGGATATGTGATGGCTC
14085608 A
1 A
14085609 ATAAGCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.27
Consensus pattern (18 bp):
ACGGATATGTGATGGCTC
Found at i:14090036 original size:93 final size:95
Alignment explanation
Indices: 14089816--14090038 Score: 244
Period size: 93 Copynumber: 2.4 Consensus size: 95
14089806 ATGAGGATAC
* * * * *
14089816 TCTCTAATC-AATGAGAAACTAAAATCAACTTTTTAATAAAAAATAGTGAAGAAATTGTCACTTA
1 TCTCTAGTCAAATGAGGAATTAAAATTAACTTTTTAATAAAAAATAGTGAAGAAATTGGCACTTA
* * *
14089880 CTTTTAAGGTAAATGGAGATATGAGAGTGT
66 CTTTTAAGATAAATGGAGACATGAGAATGT
* * * * *
14089910 TTTCTAGTCAATATG-GG-ATTGAATTTAATTTTTTAAT-TAAAATAGTGAAGAAATTGGCACTT
1 TCTCTAGTCAA-ATGAGGAATTAAAATTAACTTTTTAATAAAAAATAGTGAAGAAATTGGCACTT
*
14089972 A-TTTATAAGATAAGTGTGAG-CATGAGAATGT
65 ACTTT-TAAGATAAATG-GAGACATGAGAATGT
14090003 TCTCTAG-CAAATGAGGAATTAAAATTAACTTTTTAA
1 TCTCTAGTCAAATGAGGAATTAAAATTAACTTTTTAA
14090039 GAAGATTAAA
Statistics
Matches: 105, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
91 3 0.03
92 8 0.08
93 64 0.61
94 25 0.24
95 2 0.02
96 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (95 bp):
TCTCTAGTCAAATGAGGAATTAAAATTAACTTTTTAATAAAAAATAGTGAAGAAATTGGCACTTA
CTTTTAAGATAAATGGAGACATGAGAATGT
Found at i:14090334 original size:66 final size:64
Alignment explanation
Indices: 14090154--14090352 Score: 222
Period size: 70 Copynumber: 3.0 Consensus size: 64
14090144 CAAAAGTGAG
* * * *
14090154 ATATGAAAGTATTCTCTAGTCAATGGGTG-GTTAAAATTAATGTGTTTAATGAAAATAGTGAAGA
1 ATATGAAAGTATTCTCTAGTCAAT--GTGAATTAAAATTAATTTTTTTAATGAAAATAATGAAGA
14090218 A
64 A
**
14090219 ATAAGTTACGAAAGTATTCTCTAGTCAATGTAGCGTTAAAATTAATTTTTTTTAATGAAAATAAT
1 AT-A--T--GAAAGTATTCTCTAGTCAATGT-GAATTAAAATTAA-TTTTTTTAATGAAAATAAT
14090284 GAAGAA
59 GAAGAA
* * *
14090290 ATATGAAAGTGTTCTCTAATCAATGTGAATTAAAATTAA-CTTTTTAATGAAAATAATGAAGAA
1 ATATGAAAGTATTCTCTAGTCAATGTGAATTAAAATTAATTTTTTTAATGAAAATAATGAAGAA
14090353 TTTATCATTT
Statistics
Matches: 118, Mismatches: 8, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
63 23 0.19
65 13 0.11
66 21 0.18
68 4 0.03
69 1 0.01
70 32 0.27
71 24 0.20
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (64 bp):
ATATGAAAGTATTCTCTAGTCAATGTGAATTAAAATTAATTTTTTTAATGAAAATAATGAAGAA
Found at i:14095244 original size:26 final size:26
Alignment explanation
Indices: 14095215--14095437 Score: 225
Period size: 26 Copynumber: 8.6 Consensus size: 26
14095205 GATAAACATT
14095215 CACCGGCTCAAAGCCTGC-AAGATAAA
1 CACCGGCTCAAAGCCTGCTAA-ATAAA
* *
14095241 CACCGACTCAAAGTCTGCT-AATAAA
1 CACCGGCTCAAAGCCTGCTAAATAAA
* * *
14095266 CATCGGCTCAAAGCCTGTTAAATAAT
1 CACCGGCTCAAAGCCTGCTAAATAAA
* *
14095292 CATCAGCTCAAAGCCTGCTAAATAAA
1 CACCGGCTCAAAGCCTGCTAAATAAA
* * * * *
14095318 CACAGACTCATAGCCTGCTAAGTAAT
1 CACCGGCTCAAAGCCTGCTAAATAAA
** * * *
14095344 CACTAGCTCAAAGCCTACTAAGTAAT
1 CACCGGCTCAAAGCCTGCTAAATAAA
* *
14095370 CACTGGCTCAAAGCCTGCTAAACAAA
1 CACCGGCTCAAAGCCTGCTAAATAAA
* *
14095396 CATCGGCTCAAGGCCTGCTAAATAAA
1 CACCGGCTCAAAGCCTGCTAAATAAA
*
14095422 CACCGGCTCAAGGCCT
1 CACCGGCTCAAAGCCT
14095438 TCTATTCAGG
Statistics
Matches: 163, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
25 20 0.12
26 143 0.88
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.19
Consensus pattern (26 bp):
CACCGGCTCAAAGCCTGCTAAATAAA
Found at i:14097598 original size:42 final size:43
Alignment explanation
Indices: 14097546--14097700 Score: 172
Period size: 42 Copynumber: 3.5 Consensus size: 43
14097536 TTTACAGCGT
* * *
14097546 TTACAGAAAAAACGCCGCTAAAGGTCATGTTCTTTA-CTG-GC
1 TTACAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
*
14097587 TCTACAAAAAAAACGCCGCTAAAGATCATGTCCTTTAGCGGCGC
1 T-TACAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
*
14097631 TTATCGCTTAAAAAAAGACGCCGCTAATGATCATGTTCTTTAGCGGCGC
1 TTA---C--AAAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
*
14097680 TTA-AACAAAAACGCCGCTAAA
1 TTACAAAAAAAACGCCGCTAAA
14097701 AGTAATGTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 17
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 42 0.43
43 10 0.10
44 3 0.03
46 1 0.01
48 7 0.07
49 33 0.34
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (43 bp):
TTACAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
Found at i:14098133 original size:21 final size:21
Alignment explanation
Indices: 14098109--14098160 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
14098099 GCTTCTCTCG
*
14098109 CTGCTTCTCTCACTGCAGCCT
1 CTGCTTCCCTCACTGCAGCCT
*
14098130 CTGCTTCCCTCGCTGCAGCCT
1 CTGCTTCCCTCACTGCAGCCT
14098151 CTGCTTCCCT
1 CTGCTTCCCT
14098161 TGCTACCACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.06, C:0.46, G:0.15, T:0.33
Consensus pattern (21 bp):
CTGCTTCCCTCACTGCAGCCT
Found at i:14098172 original size:21 final size:21
Alignment explanation
Indices: 14098109--14098173 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
14098099 GCTTCTCTCG
* * *
14098109 CTGCTTCTCTCACTGCAGCCT
1 CTGCTTCCCTCGCTCCAGCCT
*
14098130 CTGCTTCCCTCGCTGCAGCCT
1 CTGCTTCCCTCGCTCCAGCCT
*
14098151 CTGCTTCCCTTGCTACCA-CCT
1 CTGCTTCCCTCGCT-CCAGCCT
14098172 CT
1 CT
14098174 ACTTTAAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 37 0.95
22 2 0.05
ACGTcount: A:0.08, C:0.46, G:0.14, T:0.32
Consensus pattern (21 bp):
CTGCTTCCCTCGCTCCAGCCT
Found at i:14103696 original size:16 final size:17
Alignment explanation
Indices: 14103677--14103711 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14103667 CAAATATGAC
14103677 AAACTA-AATATATAAT
1 AAACTACAATATATAAT
*
14103693 AAACTACATTATATAAT
1 AAACTACAATATATAAT
14103710 AA
1 AA
14103712 CCTTTCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (17 bp):
AAACTACAATATATAAT
Found at i:14103966 original size:114 final size:114
Alignment explanation
Indices: 14103723--14104509 Score: 857
Period size: 114 Copynumber: 6.9 Consensus size: 114
14103713 CTTTCCCAAA
* * * * * * * * * *
14103723 ACGCGCCGCTAATAATATGTTTTCGCGGCGTTTTCCCGTAAGTGCCACTACTGCTAGTATACATT
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * * *
14103788 AAGACCAAAGGAT-TGCGTTTTTGTTAAAATATTTTGAGGCGCTTTCT-ACC
66 AAGACCAAA--CTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTT-TGACG
* * * * * *
14103838 AAGTGCCGCTAATACTATGCATTAGCAGCGTTTTCTCATAAGCGCCACTAATTCTAATATACCTT
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* *
14103903 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGTGGCGCTTCTGACG
66 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * ** *
14103952 ACGCGCCGCTAATACTATGCATTAACGGCGTTTTCGAATAAGTGCCACTAATTCTAATATACCTC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
*
14104017 AAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCGGCG-TTTTGACG
66 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * * * *
14104065 ACACGCCACTAATACTATGCGTTAGCGGCATTTTCCCATAAGCGCCACTAATTCTAGTATACCTC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
*
14104130 AAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCGGCGCTTTTGACG
66 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * * * *
14104179 ACACGCCACTAATACTATCCGTTAGCAGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * *
14104244 AAGACCAAACTCTGCGTTTTGGTTAATATATTTTGTGGCGCTTTTCACA
66 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
** * * ** * * *
14104293 AATCGCCGCTAATACT-TACTTTAGCAGCGTTTTTTCATATGCGCCACTAATTCTAATATACATA
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * * *
14104357 AAAACCAAACTCTGCATTTTGGTTAAGATATGTTGCGGCGCGTTTGGCG
66 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * * * * * *
14104406 A-TCGCCGCTAATACT-TTCTTTAGCGGCGTTTGCCTATAATCGCCACTAATTCTAGTATACATC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * *** *
14104469 TAGACCAAAACGCTATATTTTGGTTAAGAGATTTTGCGGCG
66 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCG
14104510 TTTGATAGTA
Statistics
Matches: 583, Mismatches: 85, Indels: 10
0.86 0.13 0.01
Matches are distributed among these distances:
112 56 0.10
113 216 0.37
114 251 0.43
115 60 0.10
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (114 bp):
ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
Found at i:14104136 original size:227 final size:226
Alignment explanation
Indices: 14103747--14104512 Score: 853
Period size: 227 Copynumber: 3.4 Consensus size: 226
14103737 ATATGTTTTC
** * * * * * * *
14103747 GCGGCGTTTTCCCGTAAGTGCCACTACTGCTAGTATACATTAAGACCAAAGGAT-TGCGTTTTTG
1 GCGGCGTTTTCCAATAAGTGCCACTAATTCTAATATACCTCAAGACCAAA--CTCTGCGTTTTGG
* * * * *
14103811 TTAAAATATTTTGAGGCGCTTTCTACCAAGT-GCCGCTAATACTATGCATTAGCAGCGTTTTCTC
64 TTAAGATATTTTGCGGCGTTTTC-A-CAAATCGCCACTAATACTATGCATTAGCAGCGTTTTCTC
* * *
14103875 ATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGTG
127 ATAAGCGCCACTAATTCTAATATACCTAAAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCG
* *
14103940 GCGCTTCTGACGACGCGCCGCTAATACTATGCATTA
192 GCGCTT-TGACGACACGCCGCTAATACTATCCATTA
* *
14103976 ACGGCGTTTTCGAATAAGTGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGTGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTGGTT
* * * * * * *
14104041 AAGATATGTTGCGGCGTTTTGACGACA-CGCCACTAATACTATGCGTTAGCGGCATTTTCCCATA
66 AAGATATTTTGCGGCGTTTTCAC-AAATCGCCACTAATACTATGCATTAGCAGCGTTTTCTCATA
* *
14104105 AGCGCCACTAATTCTAGTATACCTCAAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCGGCG
130 AGCGCCACTAATTCTAATATACCTAAAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCGGCG
* *
14104170 CTTTTGACGACACGCCACTAATACTATCCGTTA
195 C-TTTGACGACACGCCGCTAATACTATCCATTA
* * *
14104203 GCAGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGTGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTGGTT
* * * * * *
14104268 AATATATTTTGTGGCGCTTTTCACAAATCGCCGCTAATACT-TACTTTAGCAGCGTTTTTTCATA
66 AAGATATTTTGCGGCG-TTTTCACAAATCGCCACTAATACTATGCATTAGCAGCGTTTTCTCATA
* * * *
14104332 TGCGCCACTAATTCTAATATACATAAAAACCAAACTCTGCATTTTGGTTAAGATATGTTGCGGCG
130 AGCGCCACTAATTCTAATATACCTAAAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCGGCG
* * * *
14104397 CGTTTGGCGA-TCGCCGCTAATACT-TTCTTTA
195 C-TTTGACGACACGCCGCTAATACTATCCATTA
* * * * * * ***
14104428 GCGGCGTTTGCCTATAA-TCGCCACTAATTCTAGTATACATCTAGACCAAAACGCTATATTTTGG
1 GCGGCGTTTTCCAATAAGT-GCCACTAATTCTAATATACCTCAAGACC-AAACTCTGCGTTTTGG
*
14104492 TTAAGAGATTTTGCGGCGTTT
64 TTAAGATATTTTGCGGCGTTT
14104513 GATAGTAAAC
Statistics
Matches: 455, Mismatches: 74, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
225 47 0.10
226 40 0.09
227 280 0.62
228 47 0.10
229 41 0.09
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (226 bp):
GCGGCGTTTTCCAATAAGTGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTGGTT
AAGATATTTTGCGGCGTTTTCACAAATCGCCACTAATACTATGCATTAGCAGCGTTTTCTCATAA
GCGCCACTAATTCTAATATACCTAAAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCGGCGC
TTTGACGACACGCCGCTAATACTATCCATTA
Found at i:14106675 original size:109 final size:109
Alignment explanation
Indices: 14106486--14107018 Score: 739
Period size: 109 Copynumber: 4.9 Consensus size: 109
14106476 AAGATATAAG
* * * *
14106486 AGGATATTTGGCTATTTGGTCCAAC--GAAAAATCGAAACCCAACGCATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* * * * * *
14106549 GAGTTTCCAAACACAAAATATTACCTCGTTTTAAAATTTTTGAA
66 GAATTTCCAAACGCAAAATATTGCCTCATTTTGAAATTTTTAAA
* *
14106593 AGGATATTTGGCTATTTGGTCGAGCAAGAAAAATC-AGAACCCAGCACATTAGGGCACATTTTCT
1 AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATCGA-AACCCAGCACATTAGGGCACGTTTTCT
* * * * * *
14106657 CGAATTTCTACATGCAAAATATTGCCTCGTTTTTAAATTTTTGAA
65 CGAATTTCCAAACGCAAAATATTGCCTCATTTTGAAATTTTTAAA
* * *
14106702 AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATTGAAACCCAGCGCATTAGGGCACATTTTCTC
1 AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
14106767 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
66 GAATTTCCAAACGCAAAATATTGCCTCATTTTGAAATTTTTAAA
14106811 AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* * *
14106876 GAATTTCCAGACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
66 GAATTTCCAAACGCAAAATATTGCCTCATTTTGAAATTTTTAAA
* * *
14106920 AGGATACTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACACATTAGGGAACGTTTTC
1 AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATCGAAACCCAG--CACATTAGGGCACGTTTTC
* *
14106985 TCGACTTTCCAAACGCAAAATATCGCCTCATTTT
64 TCGAATTTCCAAACGCAAAATATTGCCTCATTTT
14107019 TTAAAAAAAA
Statistics
Matches: 385, Mismatches: 35, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
107 23 0.06
108 1 0.00
109 313 0.81
110 1 0.00
111 47 0.12
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (109 bp):
AGGATATTTGGCTATTTGGTCGAGCGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAATATTGCCTCATTTTGAAATTTTTAAA
Found at i:14110727 original size:22 final size:22
Alignment explanation
Indices: 14110702--14110753 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
14110692 GATCATTTTT
*
14110702 TCTCAAGACCTAGATTGAGT-TG
1 TCTCAAGACCTAGATTGA-TAAG
* *
14110724 TCTCGAGA-CTAGCTTGATAAG
1 TCTCAAGACCTAGATTGATAAG
14110745 TCTCAAGAC
1 TCTCAAGAC
14110754 ATTAAGCGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (22 bp):
TCTCAAGACCTAGATTGATAAG
Found at i:14114432 original size:71 final size:72
Alignment explanation
Indices: 14114315--14114450 Score: 229
Period size: 71 Copynumber: 1.9 Consensus size: 72
14114305 TTGAAAGCTT
* * *
14114315 AAGTAAACTTAAGTAATCAGAGTTTGATTATACATGTTGGTGTAGATGGATTCATGGTGAGAGTA
1 AAGTAAACTTAAATAATAAGAGTTTGATTATACATGTTGGTGTAGATGGATTCATGGTAAGAGTA
14114380 CAAATAA
66 CAAATAA
*
14114387 AAGTAAACTTAAATAATAAG-GTTTGATTATACATGTTGGTGTAGATGGATTCCTGGTAAGAGTA
1 AAGTAAACTTAAATAATAAGAGTTTGATTATACATGTTGGTGTAGATGGATTCATGGTAAGAGTA
14114451 GTGTAAAAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
71 42 0.70
72 18 0.30
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.33
Consensus pattern (72 bp):
AAGTAAACTTAAATAATAAGAGTTTGATTATACATGTTGGTGTAGATGGATTCATGGTAAGAGTA
CAAATAA
Found at i:14118402 original size:27 final size:27
Alignment explanation
Indices: 14118275--14118518 Score: 181
Period size: 27 Copynumber: 9.1 Consensus size: 27
14118265 AATCGTTCCA
* * *
14118275 TTCAGAATCTGCCACAAAGGC-ATCCCT
1 TTCAGAGTTTGCCACAAAGGCTAT-TCT
**
14118302 TTCAGAGTTTGCCACTGAGGC-ATTCTT
1 TTCAGAGTTTGCCACAAAGGCTATTC-T
* * * **
14118329 TTTAAAGTTCGCCACTGAGGC-ATTCCT
1 TTCAGAGTTTGCCACAAAGGCTATT-CT
* ** * *
14118356 TTCAAAGTTTTTCACTAAGGTTATTCT
1 TTCAGAGTTTGCCACAAAGGCTATTCT
* * * * *
14118383 TTCAAAGTTTGCTAGAAAGGTTATCCT
1 TTCAGAGTTTGCCACAAAGGCTATTCT
* *
14118410 TTGAGAGTTTGCCACAAAGGCTATCCT
1 TTCAGAGTTTGCCACAAAGGCTATTCT
* * * *
14118437 TCCAGAGTTCGCTACAAAGACTATTCT
1 TTCAGAGTTTGCCACAAAGGCTATTCT
* *
14118464 TTCAGA-TTTTCCACAAAGACTATTCT
1 TTCAGAGTTTGCCACAAAGGCTATTCT
14118490 TTCAGAGTTTGCCACAAAGGCTATTCT
1 TTCAGAGTTTGCCACAAAGGCTATTCT
14118517 TT
1 TT
14118519 GATGTTGTGT
Statistics
Matches: 176, Mismatches: 37, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
26 24 0.14
27 148 0.84
28 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (27 bp):
TTCAGAGTTTGCCACAAAGGCTATTCT
Done.