Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 48 of 185
Found at i:14466578 original size:39 final size:38
Alignment explanation
Indices: 14466511--14466588 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
14466501 TAAAGATGTT
* *
14466511 TTTGAGTATTGGATATATGCTTAAATGTTATGTGATTA
1 TTTGAGTATTGGATATATACTTAAATGTTAGGTGATTA
* **
14466549 TTTGAGTATTGTGATATCTACTTGTATGTTAGGTGATTA
1 TTTGAGTATTG-GATATATACTTAAATGTTAGGTGATTA
14466588 T
1 T
14466589 ATGTGTAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
38 11 0.32
39 23 0.68
ACGTcount: A:0.26, C:0.04, G:0.22, T:0.49
Consensus pattern (38 bp):
TTTGAGTATTGGATATATACTTAAATGTTAGGTGATTA
Found at i:14477163 original size:14 final size:14
Alignment explanation
Indices: 14477144--14477177 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14477134 CAAAATGAAA
*
14477144 GTGGAAGATCTTAT
1 GTGGAAGACCTTAT
14477158 GTGGAAGACCTTAT
1 GTGGAAGACCTTAT
*
14477172 CTGGAA
1 GTGGAA
14477178 TAACATTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (14 bp):
GTGGAAGACCTTAT
Found at i:14478202 original size:47 final size:47
Alignment explanation
Indices: 14478133--14478231 Score: 189
Period size: 47 Copynumber: 2.1 Consensus size: 47
14478123 GAATTTGTTA
14478133 TTCTTGGAACACTTCATTCTTTTCCAAGATACACATTCCCAATCAAT
1 TTCTTGGAACACTTCATTCTTTTCCAAGATACACATTCCCAATCAAT
*
14478180 TTCTTGGAACACTTCATTCTTTTCCAAGATACACCTTCCCAATCAAT
1 TTCTTGGAACACTTCATTCTTTTCCAAGATACACATTCCCAATCAAT
14478227 TTCTT
1 TTCTT
14478232 TGTTATCTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.27, C:0.28, G:0.06, T:0.38
Consensus pattern (47 bp):
TTCTTGGAACACTTCATTCTTTTCCAAGATACACATTCCCAATCAAT
Found at i:14478213 original size:22 final size:22
Alignment explanation
Indices: 14478141--14478213 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
14478131 TATTCTTGGA
14478141 ACACTTCATTCTTTTCCAAGAT
1 ACACTTCATTCTTTTCCAAGAT
* * ***
14478163 ACACATTCCCAATCAATTTCTTGGA-
1 ACAC-TT--CATTC-TTTTCCAAGAT
14478188 ACACTTCATTCTTTTCCAAGAT
1 ACACTTCATTCTTTTCCAAGAT
14478210 ACAC
1 ACAC
14478214 CTTCCCAATC
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 6 0.17
22 12 0.33
23 2 0.06
24 2 0.06
25 8 0.22
26 6 0.17
ACGTcount: A:0.30, C:0.29, G:0.05, T:0.36
Consensus pattern (22 bp):
ACACTTCATTCTTTTCCAAGAT
Found at i:14479486 original size:177 final size:176
Alignment explanation
Indices: 14479243--14479587 Score: 525
Period size: 177 Copynumber: 2.0 Consensus size: 176
14479233 TGCCAGTCCG
* **
14479243 ATCTCCCTGATCAGCAGTGGAATAGGTGGAAGATTGTATGTCCTATCTCCCTGAACAACAGTGGA
1 ATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTCAATGTCCTATCTCCCTGAACAACAGTGGA
* **
14479308 ATAGGTTGAAGA-TAGCAAGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGTATA-
66 ATAGGTTGAAGATTA-CAAGTCCTATCTCCCTGAACAACAGTGGAATAGGTTGAAGATTACA-AG
14479371 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGCATGTCTT
129 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGCATGTCTT
* *
14479419 ATCTCCCTGAACAGCAGTTGGAATAGGTTGAAGATTACAAT-TCCTATCTCCCTGAACAGCAGTG
1 ATCTCCCTGAACAGCAG-TGGAATAGGTGGAAGATT-CAATGTCCTATCTCCCTGAACAACAGTG
*
14479483 GAATAGGTTGAAGATTACAAGTTCTATCTCCCTGAACAACAGTGGAATAGGTTGAAGATTACAAG
64 GAATAGGTTGAAGATTACAAGTCCTATCTCCCTGAACAACAGTGGAATAGGTTGAAGATTACAAG
* * *
14479548 TCCTATCTCCCTGAATAGTAGTGGAATAGGTTGAAGATTG
129 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
14479588 TAGATCCTGT
Statistics
Matches: 153, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
176 17 0.11
177 132 0.86
178 4 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (176 bp):
ATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTCAATGTCCTATCTCCCTGAACAACAGTGGA
ATAGGTTGAAGATTACAAGTCCTATCTCCCTGAACAACAGTGGAATAGGTTGAAGATTACAAGTC
CTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGCATGTCTT
Found at i:14479603 original size:44 final size:44
Alignment explanation
Indices: 14479237--14479587 Score: 506
Period size: 44 Copynumber: 8.0 Consensus size: 44
14479227 TTAAGCTGCC
* * * *
14479237 AGTCCGATCTCCCTGATCAGCAGTGGAATAGGTGGAAGATTGTA
1 AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCA
* * *
14479281 TGTCCTATCTCCCTGAACAACAGTGGAATAGGTTGAAGATAGCA
1 AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCA
*
14479325 AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGTA
1 AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCA
*
14479369 TA-TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGCA
1 -AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCA
* * *
14479413 TGTCTTATCTCCCTGAACAGCAGTTGGAATAGGTTGAAGATTACA
1 AGTCCTATCTCCCTGAACAGCAG-TGGAATAGGTTGAAGATTGCA
* *
14479458 ATTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTACA
1 AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCA
* * *
14479502 AGTTCTATCTCCCTGAACAACAGTGGAATAGGTTGAAGATTACA
1 AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCA
* *
14479546 AGTCCTATCTCCCTGAATAGTAGTGGAATAGGTTGAAGATTG
1 AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTG
14479588 TAGATCCTGT
Statistics
Matches: 276, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
44 236 0.86
45 40 0.14
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
AGTCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCA
Found at i:14495895 original size:50 final size:50
Alignment explanation
Indices: 14495829--14495961 Score: 178
Period size: 50 Copynumber: 2.7 Consensus size: 50
14495819 TAATGTCATA
* ** * * *
14495829 TCCCAGATATGGTCTTACATGGGAATTCTCATATCGGTGCCCATGCTATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
* *
14495879 TCCTAGACATGGTCTTACGA-GGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTAC-ATGGGACCTCTCATATCGGTGCCAACGCCATG
14495929 TCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTCATA
14495962 ACATCAATAA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 69 0.97
51 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
Found at i:14496282 original size:25 final size:25
Alignment explanation
Indices: 14496248--14496297 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
14496238 AGTCCTCGAA
*
14496248 CTTTTTCTTTCCCTGGTCTAACTCC
1 CTTTTTCTTTCCCCGGTCTAACTCC
14496273 CTTTTTCTTTCCCCGGTCTAACTCC
1 CTTTTTCTTTCCCCGGTCTAACTCC
14496298 AAATTTCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.08, C:0.38, G:0.08, T:0.46
Consensus pattern (25 bp):
CTTTTTCTTTCCCCGGTCTAACTCC
Found at i:14496304 original size:25 final size:25
Alignment explanation
Indices: 14496251--14496304 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
14496241 CCTCGAACTT
* ***
14496251 TTTCTTTCCCTGGTCTAACTCCCTT
1 TTTCTTTCCCCGGTCTAACTCCAAA
14496276 TTTCTTTCCCCGGTCTAACTCCAAA
1 TTTCTTTCCCCGGTCTAACTCCAAA
14496301 TTTC
1 TTTC
14496305 ATTCTTCTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.13, C:0.35, G:0.07, T:0.44
Consensus pattern (25 bp):
TTTCTTTCCCCGGTCTAACTCCAAA
Found at i:14514362 original size:26 final size:23
Alignment explanation
Indices: 14514333--14514379 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 23
14514323 TTATCACATC
14514333 ATTTCATACACTATTATCAATTCACA
1 ATTTCATAC-C-A-TATCAATTCACA
*
14514359 ATTTTATACCATATCAATTCA
1 ATTTCATACCATATCAATTCA
14514380 AATAATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 1 0.05
25 1 0.05
26 8 0.40
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (23 bp):
ATTTCATACCATATCAATTCACA
Found at i:14517329 original size:18 final size:18
Alignment explanation
Indices: 14517260--14517334 Score: 55
Period size: 18 Copynumber: 4.2 Consensus size: 18
14517250 AGAACACTAA
*
14517260 ATCACAACAAAA-TTCCAT
1 ATCATAACAAAACTT-CAT
*
14517278 ATCATATCAAAAC-TCAAT
1 ATCATAACAAAACTTC-AT
* ** * *
14517296 ATCAGATTAGATCTTCAT
1 ATCATAACAAAACTTCAT
14517314 ATCATAACAAAACTTCAT
1 ATCATAACAAAACTTCAT
14517332 ATC
1 ATC
14517335 TAATCTCTAT
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
17 1 0.02
18 40 0.93
19 2 0.05
ACGTcount: A:0.45, C:0.23, G:0.03, T:0.29
Consensus pattern (18 bp):
ATCATAACAAAACTTCAT
Found at i:14517972 original size:46 final size:46
Alignment explanation
Indices: 14517905--14518014 Score: 220
Period size: 46 Copynumber: 2.4 Consensus size: 46
14517895 CACTTAACTT
14517905 ATAACCAATGCTTATTTAGCCAAAATTTTACAAACCACCCTAACAA
1 ATAACCAATGCTTATTTAGCCAAAATTTTACAAACCACCCTAACAA
14517951 ATAACCAATGCTTATTTAGCCAAAATTTTACAAACCACCCTAACAA
1 ATAACCAATGCTTATTTAGCCAAAATTTTACAAACCACCCTAACAA
14517997 ATAACCAATGCTTATTTA
1 ATAACCAATGCTTATTTA
14518015 ATTCGTATAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.28
Consensus pattern (46 bp):
ATAACCAATGCTTATTTAGCCAAAATTTTACAAACCACCCTAACAA
Found at i:14527978 original size:16 final size:17
Alignment explanation
Indices: 14527952--14527986 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
14527942 TAGAATTGGG
*
14527952 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
14527969 TTGA-AAAATTAATTAA
1 TTGAGAAAATTAATTAA
14527985 TT
1 TT
14527987 TAAATCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:14529226 original size:71 final size:71
Alignment explanation
Indices: 14529106--14529343 Score: 413
Period size: 71 Copynumber: 3.4 Consensus size: 71
14529096 ATCAAGCATA
*
14529106 AATTAGGTTCACGTATTAATTGGATTATGACCAAACGTGAAGCGATTATTAGTACGTGTGAATGC
1 AATTAGGTTCACGTATTAATTGGATTATGACCAAACGTGAAGCGATTATTAGTACATGTGAATGC
14529171 CTAAGG
66 CTAAGG
* * *
14529177 AATAAGGTTCACGTATTAATTGGATTATGACCAAACGTGAAGCTATTATTAGCACATGTGAATGC
1 AATTAGGTTCACGTATTAATTGGATTATGACCAAACGTGAAGCGATTATTAGTACATGTGAATGC
*
14529242 TTAAGG
66 CTAAGG
* *
14529248 AATTAGGTTCACGTATTAATTGGATTATGACCAAACGTGAAGCGATTATTAATACCTGTGAATGC
1 AATTAGGTTCACGTATTAATTGGATTATGACCAAACGTGAAGCGATTATTAGTACATGTGAATGC
14529313 CTAAGG
66 CTAAGG
14529319 AATTAGGTTCACGTATTAATTGGAT
1 AATTAGGTTCACGTATTAATTGGAT
14529344 GGAAATTCAT
Statistics
Matches: 156, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 156 1.00
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.32
Consensus pattern (71 bp):
AATTAGGTTCACGTATTAATTGGATTATGACCAAACGTGAAGCGATTATTAGTACATGTGAATGC
CTAAGG
Found at i:14546224 original size:12 final size:12
Alignment explanation
Indices: 14546207--14546232 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14546197 CATTCCGAAG
14546207 TATATATATACA
1 TATATATATACA
14546219 TATATATATACA
1 TATATATATACA
14546231 TA
1 TA
14546233 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:14546752 original size:27 final size:27
Alignment explanation
Indices: 14546718--14546895 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14546708 TTTATTGTAC
14546718 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14546745 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14546771 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14546799 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14546827 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14546854 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14546881 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14546896 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14546832 original size:82 final size:81
Alignment explanation
Indices: 14546719--14546874 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14546709 TTATTGTACA
* *
14546719 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14546783 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14546800 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14546865 TGCGAGTTGA
65 TGCGAATTGA
14546875 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14546886 original size:82 final size:81
Alignment explanation
Indices: 14546715--14546895 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14546705 GTTTTTATTG
* *
14546715 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14546780 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14546796 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14546860 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14546878 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14546896 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14554939 original size:27 final size:27
Alignment explanation
Indices: 14554908--14555085 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14554898 TAAATTGTAC
14554908 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14554935 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14554961 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14554989 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14555017 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14555044 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14555071 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14555086 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14555022 original size:82 final size:81
Alignment explanation
Indices: 14554909--14555064 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14554899 AAATTGTACA
* *
14554909 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14554973 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14554990 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14555055 TGCGAGTTGA
65 TGCGAATTGA
14555065 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14555076 original size:82 final size:81
Alignment explanation
Indices: 14554905--14555085 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14554895 GATTAAATTG
* *
14554905 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14554970 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14554986 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14555050 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14555068 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14555086 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14563488 original size:4 final size:4
Alignment explanation
Indices: 14563481--14563510 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
14563471 AAATTATCTC
14563481 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
14563511 AACATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:14565960 original size:19 final size:19
Alignment explanation
Indices: 14565918--14565969 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
14565908 AATTTTTTAA
*
14565918 TTATAAAA-AGTATTAAAC
1 TTATAAAAGAGTATAAAAC
* *
14565936 TGATAAAAGAGTATAAAAT
1 TTATAAAAGAGTATAAAAC
14565955 TTATAAAAGTAGTAT
1 TTATAAAAG-AGTAT
14565970 TTTTTAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 7 0.25
19 16 0.57
20 5 0.18
ACGTcount: A:0.54, C:0.02, G:0.12, T:0.33
Consensus pattern (19 bp):
TTATAAAAGAGTATAAAAC
Found at i:14566735 original size:41 final size:41
Alignment explanation
Indices: 14566680--14566904 Score: 321
Period size: 41 Copynumber: 5.5 Consensus size: 41
14566670 GTTTTCAAAG
* * *
14566680 TTTTGAG-GAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGT
1 TTTTGAGAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCGT
* *
14566720 TTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGT
1 TTTTGAGAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCGT
14566761 TTTTGAGAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCGT
1 TTTTGAGAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCGT
* * *
14566802 TTTTGA-AGAAGCGCCACTAATGCTCGTGCCTTTAGCAGTGT
1 TTTTGAGA-AAGCGCCGCTAATGCTCGTGCCTTTAGCGGCGT
14566843 TTTTGAGAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCGTT
1 TTTTGAGAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCG-T
* *
14566885 TTTTCA-AAAACGCCGCTAAT
1 TTTTGAGAAAGCGCCGCTAAT
14566905 AATAAAATCT
Statistics
Matches: 170, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
40 8 0.05
41 155 0.91
42 7 0.04
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (41 bp):
TTTTGAGAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCGT
Found at i:14567638 original size:25 final size:25
Alignment explanation
Indices: 14567609--14567658 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
14567599 TTTTTAAAAA
*
14567609 ATTTTAAAAATATTT-TAAACTTTT
1 ATTTTTAAAATATTTATAAACTTTT
* *
14567633 ATTTTTATAATATTTATATACTTTT
1 ATTTTTAAAATATTTATAAACTTTT
14567658 A
1 A
14567659 AAGAAAAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTTTAAAATATTTATAAACTTTT
Found at i:14568187 original size:29 final size:29
Alignment explanation
Indices: 14568117--14568188 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
14568107 TTTTTCGTGA
14568117 TTTAAAATTTTAAAATGAATTTTAAAAGAT
1 TTTAAAATTTTAAAA-GAATTTTAAAAGAT
** *
14568147 TTTAATTTTTTTAAAA-AATTTTAAAAATAT
1 TTTAA-AATTTTAAAAGAATTTT-AAAAGAT
*
14568177 TTTAAACTTTTA
1 TTTAAAATTTTA
14568189 TTTTTATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 11 0.31
30 16 0.46
31 8 0.23
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (29 bp):
TTTAAAATTTTAAAAGAATTTTAAAAGAT
Found at i:14568191 original size:24 final size:25
Alignment explanation
Indices: 14568164--14568213 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
14568154 TTTTTAAAAA
14568164 ATTTTAAAAATATTT-TAAACTTTT
1 ATTTTAAAAATATTTATAAACTTTT
* * *
14568188 ATTTTTATAATATTTATATACTTTT
1 ATTTTAAAAATATTTATAAACTTTT
14568213 A
1 A
14568214 AAGAAAAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTTAAAAATATTTATAAACTTTT
Found at i:14573160 original size:43 final size:43
Alignment explanation
Indices: 14573093--14573401 Score: 350
Period size: 43 Copynumber: 7.2 Consensus size: 43
14573083 AGGTTATGTT
* * * * * *
14573093 TTTAGCGGCGTTTTTGCGAGAAGCGCTGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * **
14573136 TTTAGTGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* ** ** *
14573179 TATAGCGGCGTTTGTGGGAAAAATGCCGCTAAAGGTCGCGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
14573222 TATAGCGGCGTTTCT-GGAAAAGCGCCTCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
14573264 TATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* ** * * *
14573307 TTTAGCTGCGTTTGTAAGAAAAGCGCCGTTGAAGATCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* **
14573350 TTTAGCGGCGTTTGTAGGAAAAGTACCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
14573393 TTTAGCGGC
1 TTTAGCGGC
14573402 ATTTTTTTGG
Statistics
Matches: 228, Mismatches: 37, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
42 35 0.15
43 193 0.85
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:14577096 original size:14 final size:14
Alignment explanation
Indices: 14577079--14577127 Score: 89
Period size: 14 Copynumber: 3.5 Consensus size: 14
14577069 TCTAATTATA
14577079 ATAAATATGATATG
1 ATAAATATGATATG
14577093 ATAAATATGATATG
1 ATAAATATGATATG
*
14577107 ATAAATATGATATA
1 ATAAATATGATATG
14577121 ATAAATA
1 ATAAATA
14577128 AAATATAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (14 bp):
ATAAATATGATATG
Found at i:14577133 original size:28 final size:28
Alignment explanation
Indices: 14577079--14577133 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
14577069 TCTAATTATA
* **
14577079 ATAAATATGATATGATAAATATGATATG
1 ATAAATATGATATAATAAATAAAATATG
14577107 ATAAATATGATATAATAAATAAAATAT
1 ATAAATATGATATAATAAATAAAATAT
14577134 AGTAAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (28 bp):
ATAAATATGATATAATAAATAAAATATG
Found at i:14577139 original size:28 final size:28
Alignment explanation
Indices: 14577075--14577139 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
14577065 ATTCTCTAAT
* * **
14577075 TATAATAAATATGATATGATAAATATGA
1 TATAGTAAATATGATATAATAAATAAAA
14577103 TAT-GATAAATATGATATAATAAATAAAA
1 TATAG-TAAATATGATATAATAAATAAAA
14577131 TATAGTAAA
1 TATAGTAAA
14577140 ATATACTTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (28 bp):
TATAGTAAATATGATATAATAAATAAAA
Found at i:14581222 original size:2 final size:2
Alignment explanation
Indices: 14581217--14581245 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14581207 ACCTTAAGCT
14581217 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14581246 TTTTGCAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14584460 original size:27 final size:27
Alignment explanation
Indices: 14584397--14584460 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
14584387 TAATACATAG
14584397 TATTGGTGCCTATCTCAGAGGAGCCAA
1 TATTGGTGCCTATCTCAGAGGAGCCAA
** * ** *
14584424 TGGTGATGCCTATCTGGGAGGAGCCAT
1 TATTGGTGCCTATCTCAGAGGAGCCAA
14584451 TATTGGTGCC
1 TATTGGTGCC
14584461 ATATTGAAAG
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (27 bp):
TATTGGTGCCTATCTCAGAGGAGCCAA
Found at i:14587226 original size:28 final size:28
Alignment explanation
Indices: 14587186--14587254 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
14587176 TGCAAAATAA
14587186 AAAAAAAACATTATAATTTTATTTACAT
1 AAAAAAAACATTATAATTTTATTTACAT
*
14587214 AAAAAAACCATTATAATTTTATTTACAT
1 AAAAAAAACATTATAATTTTATTTACAT
*
14587242 AAAAAAATCATTA
1 AAAAAAAACATTA
14587255 AATATGAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (28 bp):
AAAAAAAACATTATAATTTTATTTACAT
Found at i:14588222 original size:20 final size:21
Alignment explanation
Indices: 14588197--14588236 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
14588187 TAACAAAAAA
*
14588197 TTAAAAATT-ACTTAAATATT
1 TTAAAAATTAAATTAAATATT
14588217 TTAAAAATTAAATTAAATAT
1 TTAAAAATTAAATTAAATAT
14588237 AAATATAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAAAATTAAATTAAATATT
Found at i:14588765 original size:20 final size:20
Alignment explanation
Indices: 14588742--14588780 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14588732 ATTTTTTTAG
* *
14588742 TTTTCGATATATTTTTAAAT
1 TTTTAGATATATATTTAAAT
*
14588762 TTTTATATATATATTTAAA
1 TTTTAGATATATATTTAAA
14588781 AATATATAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTTAGATATATATTTAAAT
Found at i:14601981 original size:40 final size:40
Alignment explanation
Indices: 14601883--14602185 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
14601873 TCCTCGTTCA
* * * * *
14601883 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
14601922 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14601962 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14602002 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14602042 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14602082 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
14602122 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
14602162 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14602186 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14613033 original size:48 final size:48
Alignment explanation
Indices: 14612962--14613252 Score: 276
Period size: 48 Copynumber: 6.1 Consensus size: 48
14612952 CTATGCGCAT
* * *
14612962 CGATATTCTGTTATGACATAAGGGTGGCACGAACTGTGAGCAGGCCAC
1 CGATAATCTGTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCCAC
* * * * *
14613010 CGATATTCTATTATGATACAAGGGTGGCAAGGACTGTGTGCAGGCCAC
1 CGATAATCTGTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCCAC
* * * * * * *
14613058 CAATAACCTGTTAAGATACAAGGGTGGCGCGAACTATGTGCAGGCCAT
1 CGATAATCTGTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCCAC
* * * * *
14613106 CGAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCCAC
1 CGATAATCTGTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCCAC
* * * * * * * * *
14613154 CAATAACCTATTAAGAGACAAGGGTCGCGCGAACTATGTGCAGGCCAT
1 CGATAATCTGTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCCAC
* * * * *
14613202 CGAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCCAC
1 CGATAATCTGTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCCAC
14613250 CGA
1 CGA
14613253 GAAATTTGTT
Statistics
Matches: 187, Mismatches: 56, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 187 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
CGATAATCTGTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCCAC
Found at i:14613140 original size:96 final size:96
Alignment explanation
Indices: 14612981--14613250 Score: 405
Period size: 96 Copynumber: 2.8 Consensus size: 96
14612971 GTTATGACAT
* * * * * * * * * * * *
14612981 AAGGGTGGCACGAACTGTGAGCAGGCCACCGATATTCTATTATGATACAAGGGTGGCAAGGACTG
1 AAGGGTGGCGCGAACTATGTGCAGGCCATCGAGAATCTGTTATTACACAAAGGTGGTACGGACTG
* *
14613046 TGTGCAGGCCACCAATAACCTGTTAAGATAC
66 TGTGCAGGCCACCAATAACCTATTAAGAGAC
14613077 AAGGGTGGCGCGAACTATGTGCAGGCCATCGAGAATCTGTTATTACACAAAGGTGGTACGGACTG
1 AAGGGTGGCGCGAACTATGTGCAGGCCATCGAGAATCTGTTATTACACAAAGGTGGTACGGACTG
14613142 TGTGCAGGCCACCAATAACCTATTAAGAGAC
66 TGTGCAGGCCACCAATAACCTATTAAGAGAC
*
14613173 AAGGGTCGCGCGAACTATGTGCAGGCCATCGAGAATCTGTTATTACACAAAGGTGGTACGGACTG
1 AAGGGTGGCGCGAACTATGTGCAGGCCATCGAGAATCTGTTATTACACAAAGGTGGTACGGACTG
14613238 TGTGCAGGCCACC
66 TGTGCAGGCCACC
14613251 GAGAAATTTG
Statistics
Matches: 159, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 159 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (96 bp):
AAGGGTGGCGCGAACTATGTGCAGGCCATCGAGAATCTGTTATTACACAAAGGTGGTACGGACTG
TGTGCAGGCCACCAATAACCTATTAAGAGAC
Found at i:14613228 original size:144 final size:144
Alignment explanation
Indices: 14612959--14613255 Score: 315
Period size: 144 Copynumber: 2.1 Consensus size: 144
14612949 CTACTATGCG
* * * * * ** *
14612959 CATCGATATTCTGTTATGACATAAGGGTGGCACGAACTGTGAGCAGGCCACCGATATTCTATTAT
1 CATCGAGAATCTGTTATGACACAAAGGTGGCACGAACTGTGAGCAGGCCACCAATAACCTATTAA
* * * * * * * *
14613024 GATACAAGGGTGGCAAGGACTGTGTGCAGGCCACCAATAACCTGTTAAGATACAAGGGTGGCGCG
66 GAGACAAGGGTCGCAAGAACTATGTGCAGGCCACCAAGAACCTGTTAAGACACAAAGGTGGCACG
14613089 AACTATGTGCAGGC
131 AACTATGTGCAGGC
* * * *
14613103 CATCGAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCCACCAATAACCTATTAA
1 CATCGAGAATCTGTTATGACACAAAGGTGGCACGAACTGTGAGCAGGCCACCAATAACCTATTAA
** * * * ** *
14613168 GAGACAAGGGTCGCGCGAACTATGTGCAGGCCATCGAGAATCTGTTATTACACAAAGGTGGTACG
66 GAGACAAGGGTCGCAAGAACTATGTGCAGGCCACCAAGAACCTGTTAAGACACAAAGGTGGCACG
* *
14613233 GACTGTGTGCAGGC
131 AACTATGTGCAGGC
*
14613247 CACCGAGAA
1 CATCGAGAA
14613256 ATTTGTTTTT
Statistics
Matches: 122, Mismatches: 31, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
144 122 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (144 bp):
CATCGAGAATCTGTTATGACACAAAGGTGGCACGAACTGTGAGCAGGCCACCAATAACCTATTAA
GAGACAAGGGTCGCAAGAACTATGTGCAGGCCACCAAGAACCTGTTAAGACACAAAGGTGGCACG
AACTATGTGCAGGC
Found at i:14617842 original size:45 final size:46
Alignment explanation
Indices: 14617793--14617909 Score: 211
Period size: 45 Copynumber: 2.6 Consensus size: 46
14617783 TGGTTATGAT
*
14617793 ATCTAAAGTAATAAACACTTAATCAAAA-TTGTACCTTTTTTATTC
1 ATCTAAAGTAATAAACACTTAATCAAAACATGTACCTTTTTTATTC
14617838 ATCTAAAGTAATAAACACTTAAT-AAAACATGTACCTTTTTTATTC
1 ATCTAAAGTAATAAACACTTAATCAAAACATGTACCTTTTTTATTC
14617883 ATCTAAAGTAATAAACACTTAATCAAA
1 ATCTAAAGTAATAAACACTTAATCAAA
14617910 CGAGTAATCT
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
44 4 0.06
45 62 0.90
46 3 0.04
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.36
Consensus pattern (46 bp):
ATCTAAAGTAATAAACACTTAATCAAAACATGTACCTTTTTTATTC
Found at i:14618305 original size:17 final size:17
Alignment explanation
Indices: 14618283--14618355 Score: 57
Period size: 17 Copynumber: 4.5 Consensus size: 17
14618273 CAAGATAAAC
14618283 ATTAAATTAAATTTAAT
1 ATTAAATTAAATTTAAT
**
14618300 ATTAAATT-AATAAAAT
1 ATTAAATTAAATTTAAT
* *
14618316 ACT--ACTAAGA--TAAGT
1 ATTAAATTAA-ATTTAA-T
14618331 ATTAAATTAAATTTAAT
1 ATTAAATTAAATTTAAT
14618348 ATTAAATT
1 ATTAAATT
14618356 GATTAAAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
14 4 0.10
15 4 0.10
16 10 0.24
17 21 0.50
18 3 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
ATTAAATTAAATTTAAT
Found at i:14618335 original size:48 final size:48
Alignment explanation
Indices: 14618270--14618365 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
14618260 GAACATTTAT
14618270 CTACAAGATAAACATTAAATTAAATTTAATATTAAATT-AATAAAATA
1 CTACAAGATAAACATTAAATTAAATTTAATATTAAATTGAATAAAATA
** *
14618317 CTACTAAGATAAGTATTAAATTAAATTTAATATTAAATTGATTAAAATA
1 CTAC-AAGATAAACATTAAATTAAATTTAATATTAAATTGAATAAAATA
14618366 ATATTATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 4 0.09
48 32 0.73
49 8 0.18
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.36
Consensus pattern (48 bp):
CTACAAGATAAACATTAAATTAAATTTAATATTAAATTGAATAAAATA
Found at i:14622651 original size:29 final size:29
Alignment explanation
Indices: 14622609--14622671 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
14622599 ACCATTTTTC
*
14622609 ACGACTCTAGTGATTCTTTCTTGGTTAAT
1 ACGAGTCTAGTGATTCTTTCTTGGTTAAT
14622638 ACGAGTCTAGTGATTCTTTCTTGGTTAAT
1 ACGAGTCTAGTGATTCTTTCTTGGTTAAT
14622667 A-GAGT
1 ACGAGT
14622672 GAGAAGTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.43
Consensus pattern (29 bp):
ACGAGTCTAGTGATTCTTTCTTGGTTAAT
Found at i:14628882 original size:21 final size:21
Alignment explanation
Indices: 14628829--14628884 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
14628819 GAGCTAAATA
14628829 GAAACCCATAAGGGATGAACG
1 GAAACCCATAAGGGATGAACG
* * * *
14628850 GAAGCTCGTAAGAG-TAGAACG
1 GAAACCCATAAGGGAT-GAACG
14628871 GAAACCCATAAGGG
1 GAAACCCATAAGGG
14628885 TTAAACAGAA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.41, C:0.18, G:0.30, T:0.11
Consensus pattern (21 bp):
GAAACCCATAAGGGATGAACG
Found at i:14628916 original size:42 final size:42
Alignment explanation
Indices: 14628802--14628940 Score: 131
Period size: 42 Copynumber: 3.3 Consensus size: 42
14628792 GCTCGAAGGC
* * * * *
14628802 TAAATAGAAGCTCATGAGAGCTAAATAGAAACCCATAAGGGA
1 TAAACAGAAGCTCATAAGAGCTGAATGGAAACCCATAAGGGT
* * * *
14628844 TGAACGGAAGCTCGTAAGAG-TAGAACGGAAACCCATAAGGGT
1 TAAACAGAAGCTCATAAGAGCT-GAATGGAAACCCATAAGGGT
* *
14628886 TAAACAGAAGCTCA-ATAGAGCTGAATGGAAACTCATATA-AGT
1 TAAACAGAAGCTCATA-AGAGCTGAATGGAAACCCATA-AGGGT
14628928 TAAACAGAAGCTC
1 TAAACAGAAGCTC
14628941 GTGTGAGCGA
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.03
42 74 0.95
43 2 0.03
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17
Consensus pattern (42 bp):
TAAACAGAAGCTCATAAGAGCTGAATGGAAACCCATAAGGGT
Found at i:14630720 original size:40 final size:40
Alignment explanation
Indices: 14630659--14630735 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
14630649 ATATAATGGA
* *
14630659 CCACTAGTTAGGCATATTAGTTGTTAACCAGGTTGGCGGG
1 CCACTAGTTAGGCATATTAGTTGCTAACCAGATTGGCGGG
14630699 CCACTAG-TAGGGCATGA-TAGTTGCTAACCAGATTGGC
1 CCACTAGTTA-GGCAT-ATTAGTTGCTAACCAGATTGGC
14630736 ATGTATGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 2 0.06
40 30 0.91
41 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (40 bp):
CCACTAGTTAGGCATATTAGTTGCTAACCAGATTGGCGGG
Found at i:14637894 original size:12 final size:12
Alignment explanation
Indices: 14637874--14637921 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
14637864 AAATCAAAAG
*
14637874 ACGAGGAAGATC
1 ACGAAGAAGATC
14637886 ACGAAGAAGATC
1 ACGAAGAAGATC
** *
14637898 TTGAGGAAGATC
1 ACGAAGAAGATC
*
14637910 TCGAAGAAGATC
1 ACGAAGAAGATC
14637922 TTGAGGAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.42, C:0.15, G:0.29, T:0.15
Consensus pattern (12 bp):
ACGAAGAAGATC
Found at i:14637903 original size:24 final size:24
Alignment explanation
Indices: 14637876--14637933 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
14637866 ATCAAAAGAC
14637876 GAGGAAGATCACGAAGAAGATCTT
1 GAGGAAGATCACGAAGAAGATCTT
*
14637900 GAGGAAGATCTCGAAGAAGATCTT
1 GAGGAAGATCACGAAGAAGATCTT
14637924 GAGGAAGATC
1 GAGGAAGATC
14637934 CAGAGGAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.40, C:0.12, G:0.31, T:0.17
Consensus pattern (24 bp):
GAGGAAGATCACGAAGAAGATCTT
Found at i:14637922 original size:12 final size:12
Alignment explanation
Indices: 14637879--14637933 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
14637869 AAAAGACGAG
*
14637879 GAAGATCACGAA
1 GAAGATCTCGAA
* *
14637891 GAAGATCTTGAG
1 GAAGATCTCGAA
14637903 GAAGATCTCGAA
1 GAAGATCTCGAA
* *
14637915 GAAGATCTTGAG
1 GAAGATCTCGAA
14637927 GAAGATC
1 GAAGATC
14637934 CAGAGGAAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.40, C:0.13, G:0.29, T:0.18
Consensus pattern (12 bp):
GAAGATCTCGAA
Found at i:14637942 original size:24 final size:24
Alignment explanation
Indices: 14637876--14637942 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
14637866 ATCAAAAGAC
14637876 GAGGAAGAT-CACGAAGAAGATCTT
1 GAGGAAGATCCA-GAAGAAGATCTT
14637900 GAGGAAGATCTC-GAAGAAGATCTT
1 GAGGAAGATC-CAGAAGAAGATCTT
*
14637924 GAGGAAGATCCAGAGGAAG
1 GAGGAAGATCCAGAAGAAG
14637943 TTTCAAAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
23 1 0.03
24 37 0.95
26 1 0.03
ACGTcount: A:0.40, C:0.12, G:0.33, T:0.15
Consensus pattern (24 bp):
GAGGAAGATCCAGAAGAAGATCTT
Found at i:14646275 original size:17 final size:19
Alignment explanation
Indices: 14646245--14646284 Score: 50
Period size: 17 Copynumber: 2.2 Consensus size: 19
14646235 TTGTATTTTT
14646245 ATGTGGAATGTATA-TGATC
1 ATGTGGAATGTATAGT-ATC
14646264 ATGTGG-AT-TATAGTATC
1 ATGTGGAATGTATAGTATC
14646281 ATGT
1 ATGT
14646285 TATAAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
17 11 0.55
18 3 0.15
19 6 0.30
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (19 bp):
ATGTGGAATGTATAGTATC
Found at i:14654157 original size:59 final size:59
Alignment explanation
Indices: 14654093--14654225 Score: 155
Period size: 59 Copynumber: 2.2 Consensus size: 59
14654083 AATCACTTTA
* * *
14654093 TTATTAAATTGATATAATACTTA-T-CAAGA-AAAATATTATATTAAATTTAATATTAAAT
1 TTATTAAATTAATAGAATACTTACTACAAGATAAAATA--ATATTAAATTAAATATTAAAT
* *
14654151 CTTATTAAATTAATAGAATATTTATCTACAAGATAAAATAATATTAAATTAAATATTAAGT
1 -TTATTAAATTAATAGAATACTTA-CTACAAGATAAAATAATATTAAATTAAATATTAAAT
*
14654212 TTATTAAAATAATA
1 TTATTAAATTAATA
14654226 TTATTTTTGG
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 20 0.31
60 13 0.20
61 20 0.31
62 5 0.08
63 6 0.09
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (59 bp):
TTATTAAATTAATAGAATACTTACTACAAGATAAAATAATATTAAATTAAATATTAAAT
Found at i:14660460 original size:29 final size:30
Alignment explanation
Indices: 14660418--14660484 Score: 100
Period size: 29 Copynumber: 2.2 Consensus size: 30
14660408 TAACACATGC
*
14660418 ATCCAATCAATTGGAAAATTAT-AAAATTA
1 ATCCAATCAATTGGAAAATCATAAAAATTA
*
14660447 ATCCAATCAATTGGCAAATCATAAAAATTA
1 ATCCAATCAATTGGAAAATCATAAAAATTA
14660477 ATCACAAT
1 ATC-CAAT
14660485 AAACTTTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 20 0.59
30 10 0.29
31 4 0.12
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (30 bp):
ATCCAATCAATTGGAAAATCATAAAAATTA
Found at i:14669010 original size:116 final size:117
Alignment explanation
Indices: 14668782--14669012 Score: 367
Period size: 116 Copynumber: 2.0 Consensus size: 117
14668772 TTGCTTCGAT
*
14668782 CAAACCCCATCCACTAAGGTAGGTCTCACTTGTAACTTCACAAGCAAACCTCTATCATCAGTCAA
1 CAAACCCCATCCACTAAGGTAGGTATCACTTGTAACTTCACAAGCAAACCTC--TCATCAGTCAA
*
14668847 ACTCTACTTAGCAAACATCGCTCTCAAATCAGTCATCAGTTTTTTGCTCAGTTC
64 ACTCTACTTAGCAAACATCGCTCTCAAATCAGTCATCAGTTTCTTGCTCAGTTC
**
14668901 CAAACCCCATCCACTAAGGTAGGTATCACTTGTAACTTTGCAAGCAAACCTC-CATCAGTCAAAC
1 CAAACCCCATCCACTAAGGTAGGTATCACTTGTAACTTCACAAGCAAACCTCTCATCAGTCAAAC
* *
14668965 TCTACTTAGCGAACATCGCTCTCAAATTAGTCATC-GATTTCTTGCTCA
66 TCTACTTAGCAAACATCGCTCTCAAATCAGTCATCAG-TTTCTTGCTCA
14669013 ATGCATCAAC
Statistics
Matches: 105, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
115 1 0.01
116 55 0.52
119 49 0.47
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (117 bp):
CAAACCCCATCCACTAAGGTAGGTATCACTTGTAACTTCACAAGCAAACCTCTCATCAGTCAAAC
TCTACTTAGCAAACATCGCTCTCAAATCAGTCATCAGTTTCTTGCTCAGTTC
Found at i:14672476 original size:42 final size:42
Alignment explanation
Indices: 14672429--14672511 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
14672419 TATGGCCAGG
* *
14672429 CCGTGCTTCTAACACGGTCAAGAGACACGTCCGTGTCTCAGA
1 CCGTGCATCTAACACGGTCAAGAGACACGCCCGTGTCTCAGA
*
14672471 CCGTGCATCTCACACGGTCAAGAGACACGCCCGTGTCTCAG
1 CCGTGCATCTAACACGGTCAAGAGACACGCCCGTGTCTCAG
14672512 GTCATGTGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.23, C:0.34, G:0.24, T:0.19
Consensus pattern (42 bp):
CCGTGCATCTAACACGGTCAAGAGACACGCCCGTGTCTCAGA
Found at i:14677760 original size:28 final size:27
Alignment explanation
Indices: 14677728--14677782 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
14677718 TAAAATAATT
*
14677728 AAAATTCAA-TATGTTAATAATTTAAGTG
1 AAAATT-AATTAT-TTAATAATTAAAGTG
*
14677756 AAAATTAATTATTTTATAATTAAAGTG
1 AAAATTAATTATTTAATAATTAAAGTG
14677783 TGAATTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (27 bp):
AAAATTAATTATTTAATAATTAAAGTG
Found at i:14678826 original size:17 final size:18
Alignment explanation
Indices: 14678779--14678827 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
14678769 GTGTTTATCT
14678779 TAAGTAATTATTACTGAAA
1 TAAGTAATT-TTACTGAAA
*
14678798 TAAGTGAATTTTACT-TAA
1 TAAGT-AATTTTACTGAAA
*
14678816 TTAGTAATTTTA
1 TAAGTAATTTTA
14678828 TACATGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 7 0.26
18 6 0.22
19 10 0.37
20 4 0.15
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (18 bp):
TAAGTAATTTTACTGAAA
Found at i:14680472 original size:7 final size:7
Alignment explanation
Indices: 14680460--14680486 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14680450 GGTCTCCTAA
14680460 TTTATTC
1 TTTATTC
14680467 TTTATTC
1 TTTATTC
14680474 TTTATTC
1 TTTATTC
14680481 TTTATT
1 TTTATT
14680487 GTGATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTC
Found at i:14681359 original size:41 final size:41
Alignment explanation
Indices: 14681302--14681383 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
14681292 ATCCATAAAG
14681302 TTTGATAATCTCCACAAATTAGATCTCTTGACAAAGAACAA
1 TTTGATAATCTCCACAAATTAGATCTCTTGACAAAGAACAA
14681343 TTTGATAATCTCCACAAATTAGATCTCTTGACAAAGAACAA
1 TTTGATAATCTCCACAAATTAGATCTCTTGACAAAGAACAA
14681384 CTGAAAATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (41 bp):
TTTGATAATCTCCACAAATTAGATCTCTTGACAAAGAACAA
Found at i:14684433 original size:79 final size:82
Alignment explanation
Indices: 14684322--14684506 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
14684312 GCTACTCGTT
* *
14684322 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
14684385 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
14684402 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
14684465 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
14684482 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14684507 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:14684506 original size:40 final size:40
Alignment explanation
Indices: 14684303--14684506 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
14684293 CGGAATTTAA
** *
14684303 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14684343 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14684383 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14684422 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
14684462 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
14684502 CCGGA
1 CCGGA
14684507 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:14691533 original size:16 final size:16
Alignment explanation
Indices: 14691512--14691544 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14691502 TAATTTCCTT
14691512 TAAAAACTTGGCGTGC
1 TAAAAACTTGGCGTGC
14691528 TAAAAACTTGGCGTGC
1 TAAAAACTTGGCGTGC
14691544 T
1 T
14691545 TAGGACCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (16 bp):
TAAAAACTTGGCGTGC
Found at i:14698364 original size:12 final size:12
Alignment explanation
Indices: 14698347--14698372 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14698337 TAATAACTCA
14698347 TCCATTATCAAT
1 TCCATTATCAAT
14698359 TCCATTATCAAT
1 TCCATTATCAAT
14698371 TC
1 TC
14698373 GTTCTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (12 bp):
TCCATTATCAAT
Found at i:14698774 original size:41 final size:41
Alignment explanation
Indices: 14698729--14698834 Score: 101
Period size: 41 Copynumber: 2.6 Consensus size: 41
14698719 CCTGATTAGT
*
14698729 ATACGACACATAAGTGCCTGAAACGACACGTGAGGTGTCTG
1 ATACGACACAGAAGTGCCTGAAACGACACGTGAGGTGTCTG
* * * *
14698770 ATACGACATGC-GAGGTGCCTGATACGA-ATGCGAGGT-TCCTG
1 ATACGACA--CAGAAGTGCCTGAAACGACACGTGAGGTGT-CTG
*
14698811 ATACGACACACGAGGTGCCTGAAA
1 ATACGACACA-GAAGTGCCTGAAA
14698835 TACGACACAT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
39 1 0.02
40 1 0.02
41 38 0.70
42 13 0.24
43 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (41 bp):
ATACGACACAGAAGTGCCTGAAACGACACGTGAGGTGTCTG
Found at i:14698775 original size:21 final size:21
Alignment explanation
Indices: 14698742--14698842 Score: 114
Period size: 21 Copynumber: 4.8 Consensus size: 21
14698732 CGACACATAA
* *
14698742 GTGCCTGAAACGACACGTGAG
1 GTGCCTGATACGACACGCGAG
* *
14698763 GTGTCTGATACGACATGCGAG
1 GTGCCTGATACGACACGCGAG
*
14698784 GTGCCTGATACGA-ATGCGAG
1 GTGCCTGATACGACACGCGAG
* *
14698804 GTTCCTGATACGACACACGAG
1 GTGCCTGATACGACACGCGAG
14698825 GTGCCTGAAATACGACAC
1 GTGCCTG--ATACGACAC
14698843 ATAAAGTGCC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
20 19 0.28
21 40 0.59
23 9 0.13
ACGTcount: A:0.28, C:0.24, G:0.30, T:0.19
Consensus pattern (21 bp):
GTGCCTGATACGACACGCGAG
Found at i:14698841 original size:23 final size:21
Alignment explanation
Indices: 14698729--14698884 Score: 102
Period size: 21 Copynumber: 7.4 Consensus size: 21
14698719 CCTGATTAGT
* *
14698729 ATACGACACA-TAAGTGCCTG
1 ATACGACACACGAGGTGCCTG
* ** *
14698749 AAACGACACGTGAGGTGTCTG
1 ATACGACACACGAGGTGCCTG
**
14698770 ATACGACATGCGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
** *
14698791 ATACGA-ATGCGAGGTTCCTG
1 ATACGACACACGAGGTGCCTG
14698811 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
** *
14698832 AAATACGACACATAAAGTGCCTG
1 --ATACGACACACGAGGTGCCTG
** *
14698855 ATATACGACACATAAAGTGCCTG
1 --ATACGACACACGAGGTGCCTG
14698878 AT-CGACA
1 ATACGACA
14698885 AAGCCGATAA
Statistics
Matches: 115, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
20 32 0.28
21 43 0.37
23 40 0.35
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:14700104 original size:16 final size:16
Alignment explanation
Indices: 14700073--14700117 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
14700063 GTTAACAATA
*
14700073 ATAATAAAAATATAAT
1 ATAATAAATATATAAT
*
14700089 ATAATAAATATCTAAT
1 ATAATAAATATATAAT
14700105 -TAAATAAATATAT
1 AT-AATAAATATAT
14700118 TACAAATGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 1 0.04
16 24 0.96
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
ATAATAAATATATAAT
Found at i:14700454 original size:5 final size:5
Alignment explanation
Indices: 14700405--14700453 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
14700395 TATTTATTTC
*
14700405 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAC ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
14700454 CTAATTTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:14703721 original size:9 final size:9
Alignment explanation
Indices: 14703698--14703734 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
14703688 CTTGAACTAC
14703698 TGCCACCCA
1 TGCCACCCA
14703707 TG---CCCA
1 TGCCACCCA
14703713 TGCCACCCA
1 TGCCACCCA
14703722 TGCCACCCA
1 TGCCACCCA
14703731 TGCC
1 TGCC
14703735 CTCGAACAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
6 6 0.24
9 19 0.76
ACGTcount: A:0.19, C:0.54, G:0.14, T:0.14
Consensus pattern (9 bp):
TGCCACCCA
Found at i:14708281 original size:8 final size:8
Alignment explanation
Indices: 14708268--14708300 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
14708258 TAAACTATAT
14708268 TTTAAATA
1 TTTAAATA
*
14708276 TTTAAACA
1 TTTAAATA
14708284 TTTAAATA
1 TTTAAATA
14708292 TTTAAATA
1 TTTAAATA
14708300 T
1 T
14708301 AACCATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (8 bp):
TTTAAATA
Found at i:14708450 original size:17 final size:18
Alignment explanation
Indices: 14708411--14708451 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
14708401 AAGTCTAGGG
14708411 TTTTTACGATTAGGTTTC
1 TTTTTACGATTAGGTTTC
*
14708429 TTTTTACGATTGGGTTTC
1 TTTTTACGATTAGGTTTC
14708447 TTTTT
1 TTTTT
14708452 GCCCCGACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.12, C:0.10, G:0.17, T:0.61
Consensus pattern (18 bp):
TTTTTACGATTAGGTTTC
Found at i:14711976 original size:12 final size:12
Alignment explanation
Indices: 14711959--14711997 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14711949 ATGAGTTATT
14711959 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
14711971 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
14711983 TAAGTGAGTAAG
1 TAAGTAAGCAAG
14711995 TAA
1 TAA
14711998 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:14713995 original size:16 final size:16
Alignment explanation
Indices: 14713974--14714042 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
14713964 TTTGGTTCGC
14713974 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14713990 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14714006 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
14714023 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14714039 TGTA
1 TGTA
14714043 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14714020 original size:33 final size:32
Alignment explanation
Indices: 14713974--14714042 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
14713964 TTTGGTTCGC
14713974 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
14714006 TGTATTGAGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTG-GATTAGAGGTGTATTGGATTAGAGG
14714039 TGTA
1 TGTA
14714043 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 7 0.19
33 29 0.81
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:14714107 original size:44 final size:45
Alignment explanation
Indices: 14714023--14714113 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
14714013 AGATTAGAGG
* * *
14714023 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
14714068 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
14714112 TG
1 TG
14714114 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:14714295 original size:16 final size:16
Alignment explanation
Indices: 14714258--14714312 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
14714248 TTAATCATAT
*
14714258 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
14714274 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
14714289 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
14714307 -TAAAAT
1 TTAAAAT
14714313 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:14714305 original size:18 final size:18
Alignment explanation
Indices: 14714264--14714312 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
14714254 ATATTTAAAC
14714264 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
14714282 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
14714298 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
14714313 TCTTAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:14714426 original size:14 final size:15
Alignment explanation
Indices: 14714377--14714428 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14714367 ATAAAATATA
14714377 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14714392 TATTAAATATATTAT
1 AATTAAATATATTAT
14714407 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14714420 AATTTAATA
1 AATTAAATA
14714429 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14714474 original size:120 final size:119
Alignment explanation
Indices: 14714261--14714483 Score: 403
Period size: 120 Copynumber: 1.9 Consensus size: 119
14714251 ATCATATTTA
*
14714261 AACATAATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
14714326 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATA-GATACTATAAAATATAAATT
*
14714381 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA-CTA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATC-A
14714445 ATATTCTTATATGAATTTACTCAAATCATAATATAGATA
65 ATATTCTTATATGAATTTACTCAAATCATAATATAGATA
14714484 ATTTAACATA
Statistics
Matches: 100, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
119 5 0.05
120 95 0.95
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (119 bp):
AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATAGATACTATAAAATATAAATT
Found at i:14714479 original size:59 final size:59
Alignment explanation
Indices: 14714296--14714479 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
14714286 TAATTAAAAT
14714296 ATATAATTTAATAAAATTCTTAATAA-TCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAACT-AATATTCTTATATGAATTTACTCAAATCATA
* * * * * * *
14714355 ATAT-ATGATACTATAAAA-TATAAATTAACATAATTATTATTAAAT-ATATTATAATTAAA--A
1 ATATAAT-TTA--ATAAAATTCTTAA-TAAC-TAA-TATTCTTATATGA-ATT-TACTCAAATCA
14714415 T-
58 TA
14714416 ATATAATTTAATAAAATTCTTAATAACTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAACTAATATTCTTATATGAATTTACTCAAATCATA
14714475 ATATA
1 ATATA
14714480 GATAATTTAA
Statistics
Matches: 96, Mismatches: 14, Indels: 30
0.69 0.10 0.21
Matches are distributed among these distances:
56 6 0.06
57 12 0.12
58 8 0.08
59 21 0.22
60 8 0.08
61 15 0.16
62 7 0.07
63 13 0.14
64 6 0.06
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAACTAATATTCTTATATGAATTTACTCAAATCATA
Found at i:14714874 original size:13 final size:13
Alignment explanation
Indices: 14714856--14714880 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14714846 GCCTTAACAA
14714856 GAGCAGCACTCAT
1 GAGCAGCACTCAT
14714869 GAGCAGCACTCA
1 GAGCAGCACTCA
14714881 AAACAGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (13 bp):
GAGCAGCACTCAT
Found at i:14736270 original size:21 final size:21
Alignment explanation
Indices: 14736229--14736272 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14736219 AACAGCGGTG
* *
14736229 GCGGTGAGATTTGTTACTGTA
1 GCGGTGAGATTGGATACTGTA
*
14736250 GCGGTGAGATTGGATATTGTA
1 GCGGTGAGATTGGATACTGTA
14736271 GC
1 GC
14736273 AGTAATATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.09, G:0.36, T:0.34
Consensus pattern (21 bp):
GCGGTGAGATTGGATACTGTA
Found at i:14744200 original size:35 final size:35
Alignment explanation
Indices: 14744148--14744260 Score: 93
Period size: 35 Copynumber: 3.1 Consensus size: 35
14744138 CCCCTTTTAA
* * *
14744148 GGTGTCACTCCGTAGGACCCGTATATCATTTACAC
1 GGTGTCACCCCGAAGGACCAGTATATCATTTACAC
*
14744183 GGTGTCACCCCGAAGGACCAGTTGATAACCATTTACAC
1 GGTGTCACCCCGAAGGACCAG-T-AT-ATCATTTACAC
* ** * * *
14744221 AGTGTTGCCTCGAAGGACCTA-TATATCGTTTACAT
1 GGTGTCACCCCGAAGGACC-AGTATATCATTTACAC
14744256 GGTGT
1 GGTGT
14744261 TGCCCTAAAG
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
35 30 0.48
36 3 0.05
37 3 0.05
38 25 0.40
39 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (35 bp):
GGTGTCACCCCGAAGGACCAGTATATCATTTACAC
Found at i:14750739 original size:24 final size:25
Alignment explanation
Indices: 14750688--14750741 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
14750678 ATTCGTAGGT
* *
14750688 TAAATAAATTATGCTAACAAAATGC
1 TAAATAAATTATACTAACAAAATAC
* *
14750713 TAAATATATTATACTAA-TAAATAC
1 TAAATAAATTATACTAACAAAATAC
14750737 TAAAT
1 TAAAT
14750742 TTTTTAGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (25 bp):
TAAATAAATTATACTAACAAAATAC
Found at i:14754350 original size:22 final size:21
Alignment explanation
Indices: 14754302--14754350 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
14754292 AACTAAATCC
** *
14754302 TTTCTCTCAATTTTTCTCTAA
1 TTTCTCTCAATTCCTCTCAAA
14754323 TATTCTCTCAAATTCCTCTCAAA
1 T-TTCTCTC-AATTCCTCTCAAA
14754346 TTTCT
1 TTTCT
14754351 ATTTAAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 11 0.48
23 11 0.48
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTCTCTCAATTCCTCTCAAA
Found at i:14756490 original size:21 final size:21
Alignment explanation
Indices: 14756466--14756520 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
14756456 CAACACCGAC
14756466 AACCAG-ATCCCCTACCGGATG
1 AACCAGAATCCCC-ACCGGATG
14756487 AACCAGAATCCCCACCGGA-G
1 AACCAGAATCCCCACCGGATG
*
14756507 CAACCACAATCCCC
1 -AACCAGAATCCCC
14756521 GTCGAAAGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 1 0.03
21 24 0.77
22 6 0.19
ACGTcount: A:0.33, C:0.44, G:0.15, T:0.09
Consensus pattern (21 bp):
AACCAGAATCCCCACCGGATG
Found at i:14756699 original size:49 final size:49
Alignment explanation
Indices: 14756645--14756914 Score: 513
Period size: 49 Copynumber: 5.5 Consensus size: 49
14756635 GTTTATATTA
*
14756645 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
* *
14756694 ATGTAATAAAATACAAAATAGTTTACTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
14756743 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
14756792 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
14756841 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
14756890 ATGTAATAAAATACAAAATAGTTTA
1 ATGTAATAAAATACAAAATAGTTTA
14756915 AAAAGTCAAC
Statistics
Matches: 218, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 218 1.00
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
Found at i:14758071 original size:265 final size:265
Alignment explanation
Indices: 14757598--14758126 Score: 1040
Period size: 265 Copynumber: 2.0 Consensus size: 265
14757588 CGTGAAAACA
14757598 GTCTTTATTTATTTCATACCCTGCCAATATAAGTTCATATCGAATATTACATACCACTTTTTCAT
1 GTCTTTATTTATTTCATACCCTGCCAATATAAGTTCATATCGAATATTACATACCACTTTTTCAT
14757663 TTACAATAAATTCAAAATGGCAAACGAAATAACACAGATAGAGACTAAATACCCATGTTGGTCAC
66 TTACAATAAATTCAAAATGGCAAACGAAATAACACAGATAGAGACTAAATACCCATGTTGGTCAC
14757728 TTGTCATCGTTCGCTCTTAGATGGATATTGCCTGTTGTAGTTGGAAGCAACGTGCCTTAGGCAAT
131 TTGTCATCGTTCGCTCTTAGATGGATATTGCCTGTTGTAGTTGGAAGCAACGTGCCTTAGGCAAT
*
14757793 ATCGATGGTGTGTGCGCTGCCATAAGCTTCCCTGTCGATCAAATGCAGCTAGTATACCGGAGCCC
196 ATCGATGGTGTGTGCGCTGCCATAAGCTTCCCTATCGATCAAATGCAGCTAGTATACCGGAGCCC
14757858 CGATC
261 CGATC
14757863 GTCTTTATTTATTTCATACCCTGCCAATATAAGTTCATATCGAATATTACATACCACTTTTTCAT
1 GTCTTTATTTATTTCATACCCTGCCAATATAAGTTCATATCGAATATTACATACCACTTTTTCAT
14757928 TTACAATAAATTCAAAATGGCAAACGAAATAACACAGATAGAGACTAAATACCCATGTTGGTCAC
66 TTACAATAAATTCAAAATGGCAAACGAAATAACACAGATAGAGACTAAATACCCATGTTGGTCAC
14757993 TTGTCATCGTTCGCTCTTAGATGGATATTGCCTGTTGTAGTTGGAAGCAACGTGCCTTAGGCAAT
131 TTGTCATCGTTCGCTCTTAGATGGATATTGCCTGTTGTAGTTGGAAGCAACGTGCCTTAGGCAAT
*
14758058 ATCGATGGTGTGTGCGCTGCCATAAGCTTCCCTATCGATCAAATGCAGCTAGTATACCGGTGCCC
196 ATCGATGGTGTGTGCGCTGCCATAAGCTTCCCTATCGATCAAATGCAGCTAGTATACCGGAGCCC
14758123 CGAT
261 CGAT
14758127 TGAAATAACA
Statistics
Matches: 262, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
265 262 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (265 bp):
GTCTTTATTTATTTCATACCCTGCCAATATAAGTTCATATCGAATATTACATACCACTTTTTCAT
TTACAATAAATTCAAAATGGCAAACGAAATAACACAGATAGAGACTAAATACCCATGTTGGTCAC
TTGTCATCGTTCGCTCTTAGATGGATATTGCCTGTTGTAGTTGGAAGCAACGTGCCTTAGGCAAT
ATCGATGGTGTGTGCGCTGCCATAAGCTTCCCTATCGATCAAATGCAGCTAGTATACCGGAGCCC
CGATC
Found at i:14760417 original size:123 final size:124
Alignment explanation
Indices: 14760035--14760444 Score: 669
Period size: 124 Copynumber: 3.3 Consensus size: 124
14760025 CCCAAACATG
*
14760035 CTACTGTAGCAAAAACGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
*
14760100 TTGAAGCGTTTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * *
14760159 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCGATTTCAGAAATTCTTCTGATAAATCATCCTGT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
* *
14760224 TTCAAGCGTTTTTTATACTATTTGCTGAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCG-TTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * *
14760284 CTACTGTAGTAAAAGCGTGTCCACGTGGGAGCGATTT-AGAAATTCTTCTGATAAAGCATACTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
* * * *
14760348 TTGAAACGTTTTTATACTATTTGCTCAAAAATGTCAACTCAAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
*
14760407 CTACTGTAGTAAAAGCGCGTCCACGTGGGAGCGATTTC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
14760445 CTTAATAAAT
Statistics
Matches: 264, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
123 83 0.31
124 98 0.37
125 83 0.31
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:14773337 original size:34 final size:34
Alignment explanation
Indices: 14773299--14773366 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
14773289 AATTTCCCTA
*
14773299 TATAACTCCATTTTAAACTAATGCCCTTAATAGC
1 TATAACTCCATTTTAAACTAATGCCCTCAATAGC
14773333 TATAACTCCATTTTAAACTAATGCCCTCAATAGC
1 TATAACTCCATTTTAAACTAATGCCCTCAATAGC
14773367 CATTTCTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (34 bp):
TATAACTCCATTTTAAACTAATGCCCTCAATAGC
Found at i:14774814 original size:20 final size:21
Alignment explanation
Indices: 14774773--14774814 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
14774763 TCAGTACATT
*
14774773 TCCAGCTAGCTCAATTTCAGC
1 TCCAGCTAGCTCAATCTCAGC
14774794 TCCAG-TAGCTCAA-CTCTAGC
1 TCCAGCTAGCTCAATCTC-AGC
14774814 T
1 T
14774815 GACAAGTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 2 0.11
20 12 0.63
21 5 0.26
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (21 bp):
TCCAGCTAGCTCAATCTCAGC
Found at i:14781076 original size:20 final size:21
Alignment explanation
Indices: 14781035--14781076 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
14781025 TCAGTACATT
*
14781035 TCCAGCTAGCTCAATTTCAGC
1 TCCAGCTAGCTCAATCTCAGC
14781056 TCCAG-TAGCTCAA-CTCTAGC
1 TCCAGCTAGCTCAATCTC-AGC
14781076 T
1 T
14781077 GACAAGTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 2 0.11
20 12 0.63
21 5 0.26
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (21 bp):
TCCAGCTAGCTCAATCTCAGC
Found at i:14786783 original size:23 final size:24
Alignment explanation
Indices: 14786743--14786790 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
14786733 TTGTGGCAAA
14786743 CTCTAAAAAGAATAGCCTTTGTGG
1 CTCTAAAAAGAATAGCCTTTGTGG
* *
14786767 CTCTAAAAGGGAT-GCCTTTGTGG
1 CTCTAAAAAGAATAGCCTTTGTGG
14786790 C
1 C
14786791 AAATTCTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (24 bp):
CTCTAAAAAGAATAGCCTTTGTGG
Found at i:14790428 original size:39 final size:39
Alignment explanation
Indices: 14790385--14790664 Score: 365
Period size: 39 Copynumber: 7.3 Consensus size: 39
14790375 AGAAAATCTT
* *
14790385 ATTCAAAATAATCAGTAGATAATGCTCGTTTGAGCAAGC
1 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
14790424 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
14790463 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* * * *
14790502 ATTCAGTACAATCAGTGCATAATGCTCATTTGAGCAAGC
1 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
** *
14790541 ATTCGGTATAATTAGT-G-----GCTCGTTTGAGCAAGC
1 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
14790574 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* * * * * *
14790613 ATTCAGTATAATTAATGCATAATTCTCGTTTGAGCAAATC
1 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGC-AAGC
*
14790653 ATTCAGTATAAT
1 ATTCAATATAAT
14790665 TGAAATTCCA
Statistics
Matches: 214, Mismatches: 20, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
33 28 0.13
34 1 0.00
39 170 0.79
40 15 0.07
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.32
Consensus pattern (39 bp):
ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
Found at i:14802635 original size:4 final size:4
Alignment explanation
Indices: 14802621--14802662 Score: 75
Period size: 4 Copynumber: 10.5 Consensus size: 4
14802611 TATTATCAAA
*
14802621 ATGT GTGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
14802663 ACATATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:14804520 original size:44 final size:44
Alignment explanation
Indices: 14804457--14804556 Score: 119
Period size: 44 Copynumber: 2.3 Consensus size: 44
14804447 TTAATTCGCT
* * * * *
14804457 CCACTACAACTTTAGGGAGATAAGACTTATATTTTCAATCTGCC
1 CCACTGCAACTTCAAGGAGATAAGACTTATATCTTCAACCTGCC
** * *
14804501 CCACTGCAACTTCAAGGAGATAAGGTTTGTGTCTTCAACCTGCC
1 CCACTGCAACTTCAAGGAGATAAGACTTATATCTTCAACCTGCC
14804545 CCACTGCAACTT
1 CCACTGCAACTT
14804557 TAGGGGATGA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
CCACTGCAACTTCAAGGAGATAAGACTTATATCTTCAACCTGCC
Found at i:14804584 original size:43 final size:44
Alignment explanation
Indices: 14804490--14804616 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 44
14804480 GACTTATATT
*
14804490 TTCAATCTGCCCCACTGCAACTTCAAGGAGATAAGGTTTGTGTC
1 TTCAACCTGCCCCACTGCAACTTCAAGGAGATAAGGTTTGTGTC
* * *
14804534 TTCAACCTGCCCCACTGCAACTT-TAGGGGATGAGGTTTGT-TAC
1 TTCAACCTGCCCCACTGCAACTTCAAGGAGATAAGGTTTGTGT-C
* * *
14804577 TTCAACCTACTCTACTGCAACTTC-AGAGAGATAAGGTTTG
1 TTCAACCTGCCCCACTGCAACTTCAAG-GAGATAAGGTTTG
14804617 ATATGATAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 37 0.52
44 33 0.46
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
TTCAACCTGCCCCACTGCAACTTCAAGGAGATAAGGTTTGTGTC
Found at i:14804912 original size:45 final size:44
Alignment explanation
Indices: 14804774--14804927 Score: 157
Period size: 44 Copynumber: 3.5 Consensus size: 44
14804764 ACCTGCCCCG
* * * *
14804774 CTGCTATTTTAGGGGGATAAGGTTTGTTAT-TTTAACCTGCTCTA
1 CTGCAATTTCAGGGAGATAAGGTTTG-TATCTTTAATCTGCTCTA
* ** *
14804818 CTGCAATTTCAGAGAGATAAGGTTTGTGGCTTTAATCTGCTCCA
1 CTGCAATTTCAGGGAGATAAGGTTTGTATCTTTAATCTGCTCTA
* * *
14804862 CTGCAATTTCAGGGAGATAAGGATTGCTATCTTTAGTCTGTTCTA
1 CTGCAATTTCAGGGAGATAAGGTTTG-TATCTTTAATCTGCTCTA
** *
14804907 CTGCAACCTCAGTGAGATAAG
1 CTGCAATTTCAGGGAGATAAG
14804928 ACTTGTAGCT
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
43 1 0.01
44 58 0.64
45 31 0.34
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (44 bp):
CTGCAATTTCAGGGAGATAAGGTTTGTATCTTTAATCTGCTCTA
Found at i:14805120 original size:44 final size:41
Alignment explanation
Indices: 14805051--14805159 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
14805041 TCAACTTACC
* * * * *
14805051 CTACTGCAACTTCAGGGTGACAAGGTTAGTGATTTCAACCTGCT
1 CTACTGCAACTTCAGAGAGATAAGGTT--TGATAT-AACCTACT
* *
14805095 CTACTGCAACTTCAGAGAGATAAGGTTTGATATGATCTACT
1 CTACTGCAACTTCAGAGAGATAAGGTTTGATATAACCTACT
**
14805136 CTACTATAACTTCAGAGAGATAAG
1 CTACTGCAACTTCAGAGAGATAAG
14805160 ATCGATAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
41 27 0.48
42 5 0.09
44 24 0.43
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (41 bp):
CTACTGCAACTTCAGAGAGATAAGGTTTGATATAACCTACT
Found at i:14805255 original size:45 final size:44
Alignment explanation
Indices: 14805188--14805524 Score: 168
Period size: 44 Copynumber: 7.5 Consensus size: 44
14805178 CTATCTATCT
* * * *
14805188 CACTGCAACGTCAGGAAAATAAGACTTGCTATCTTCAGTCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAATCTGCTC
* *
14805233 CACTGCAACTTCAGGGAGATAAGACTCGTAAT-TTCAA-CATGCCC
1 CACTGCAACTTCAGGGAGATAAGACTTGT-ATCTTCAATC-TGCTC
* * ** * * *
14805277 CACTGCAACTTCAGAGAGATGAGGTTTG-AT-AT-GATCTACTC
1 CACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATCTGCTC
** * * **
14805318 CACTATAACTTCAGAGAGATAAGATCGGTAATTTATAGCTTCAATCTATTC
1 CACTGCAACTTCAGGGAGATAAGA-C--T--TGTAT--CTTCAATCTGCTC
* * **
14805369 CAGTGCAACTTCAGGGAAATAAGA-TTCGCTATCTTCAGCCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTT-G-TATCTTCAATCTGCTC
** * * * *
14805414 CACTATAACTTTAGGGAGATAAGACTCGTAAT-TTCAACCTGCCC
1 CACTGCAACTTCAGGGAGATAAGACTTGT-ATCTTCAATCTGCTC
* * * *
14805458 CACTGTAACTTTAGGGAGATAAGA-TTATTAGCTTCAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTT-GTATCTTCAATCTGCTC
* * *
14805502 CGCTGCATCTTTAGGGAGATAAG
1 CACTGCAACTTCAGGGAGATAAG
14805525 GTTCACCATC
Statistics
Matches: 222, Mismatches: 51, Indels: 39
0.71 0.16 0.12
Matches are distributed among these distances:
41 24 0.11
42 4 0.02
43 3 0.01
44 98 0.44
45 58 0.26
46 2 0.01
47 6 0.03
50 1 0.00
51 26 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (44 bp):
CACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATCTGCTC
Found at i:14805269 original size:181 final size:181
Alignment explanation
Indices: 14805053--14805480 Score: 617
Period size: 181 Copynumber: 2.4 Consensus size: 181
14805043 AACTTACCCT
* * ** * * * *
14805053 ACTGCAACTTCAGGGTGACAAGGTTAGTGATTTCAACCTGCTCTACTGCAACTTCAGAGAGATAA
1 ACTGCAACTTCAGGGAGATAAGACTCGTAATTTCAACCTGCCCCACTGCAACTTCAGAGAGATAA
* *
14805118 GGTTTGATATGATCTACTCTACTATAACTTCAGAGAGATAAGATCGATAATTTATAGCTTCTATC
66 GGTTTGATATGATCTACTCCACTATAACTTCAGAGAGATAAGATCGATAATTTATAGCTTCAATC
*
14805183 TA-TCTCACTGCAACGTCAGGAAAATAAGACTT-GCTATCTTCAGTCTGCTCC
131 TATTC-CACTGCAACGTCAGGAAAATAAGA-TTCGCTATCTTCAGCCTGCTCC
* *
14805234 ACTGCAACTTCAGGGAGATAAGACTCGTAATTTCAACATGCCCCACTGCAACTTCAGAGAGATGA
1 ACTGCAACTTCAGGGAGATAAGACTCGTAATTTCAACCTGCCCCACTGCAACTTCAGAGAGATAA
*
14805299 GGTTTGATATGATCTACTCCACTATAACTTCAGAGAGATAAGATCGGTAATTTATAGCTTCAATC
66 GGTTTGATATGATCTACTCCACTATAACTTCAGAGAGATAAGATCGATAATTTATAGCTTCAATC
* * *
14805364 TATTCCAGTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGCCTGCTCC
131 TATTCCACTGCAACGTCAGGAAAATAAGATTCGCTATCTTCAGCCTGCTCC
** * * * *
14805415 ACTATAACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCCCCACTGTAACTTTAGGGAGATAA
1 ACTGCAACTTCAGGGAGATAAGACTCGTAATTTCAACCTGCCCCACTGCAACTTCAGAGAGATAA
14805480 G
66 G
14805481 ATTATTAGCT
Statistics
Matches: 220, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
180 2 0.01
181 216 0.98
182 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (181 bp):
ACTGCAACTTCAGGGAGATAAGACTCGTAATTTCAACCTGCCCCACTGCAACTTCAGAGAGATAA
GGTTTGATATGATCTACTCCACTATAACTTCAGAGAGATAAGATCGATAATTTATAGCTTCAATC
TATTCCACTGCAACGTCAGGAAAATAAGATTCGCTATCTTCAGCCTGCTCC
Found at i:14805757 original size:100 final size:100
Alignment explanation
Indices: 14805534--14806105 Score: 698
Period size: 100 Copynumber: 5.8 Consensus size: 100
14805524 GGTTCACCAT
* ** *
14805534 CTTCAATCTATTTAACTGTAATGTCGGGGAAGTAAGATTCG-CTGTCGTAGCTTCAATCTATTCC
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGAC-GTCGTAGCTTCAATCTGTTCC
*
14805598 ACTACACCGCC-GGGAAGTAAGATT--C-GTTGTAG
65 ACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * * * *
14805630 CTTCAATCTATCTAACTGCAATGTTGGGGAAGCAAGATTCGACATCGTAGCTTCAATCTGTTCTA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGACGTCGTAGCTTCAATCTGTTCCA
* * * * *
14805695 TTGCACTGCCAGGGTAGTGAGATTCACTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * * *
14805730 CTTCAATCTATTTAACTGCAATGTTGGGGAAATAAGATT-TACTGTCGTAGCTTCAATCTGTTCG
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGAC-GTCGTAGCTTCAATCTGTTCC
* * * *
14805794 ACTGCACTGCCAAGGAAGCAAGATTCGTTGTTGTAG
65 ACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * * *
14805830 CTTCAATCTATTTAATTGCAATGTCGAGGAAACAAGATTCGTCGTCGTAGCTTCAATCTGTTCTA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGACGTCGTAGCTTCAATCTGTTCCA
* *
14805895 CTGCACCACCAAGGAAGTAAGATTCGCTG-T-T-G
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * * *
14805927 --TCAATCTATTTAACTGCAATGTCGGGGAAAAAATATTCGCCGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGACGTCGTAGCTTCAATCTGTTCCA
*
14805990 CTGCACCGTCAGGGAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
**
14806025 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGTTGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGACGTCGTAGCTTCAATCTGTTCCA
* **
14806090 TTGCAAAGCCAGGGAA
66 CTGCACCGCCAGGGAA
14806106 ATAGGATCTG
Statistics
Matches: 409, Mismatches: 55, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
95 82 0.20
96 64 0.16
97 14 0.03
98 2 0.00
99 4 0.01
100 242 0.59
101 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (100 bp):
CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGACGTCGTAGCTTCAATCTGTTCCA
CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
Found at i:14806023 original size:195 final size:198
Alignment explanation
Indices: 14805536--14806087 Score: 740
Period size: 195 Copynumber: 2.8 Consensus size: 198
14805526 TTCACCATCT
* * *
14805536 TCAATCTATTTAACTGTAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCTATTCCACT
1 TCAATCTATTTAACTGCAATGTCGGGGAAATAAGATTCGCTGTCGTAGCTTCAATCTGTTCCACT
* * * * *
14805601 ACACCGCCGGGAAGTAAGATT--C-GTTGTAGCTTCAATCTATCTAACTGCAATGTTGGGGAAGC
66 GCACCGCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAAC
* * * ** * * *
14805663 AAGATTCGACATCGTAGCTTCAATCTGTTCTATTGCACTGCCAGGGTAGTGAGATTCACTGTTGT
131 AAGATTCGTCGTCGTAGCTTCAATCTGTTCTACTGCACCACCAAGGAAGTAAGATTCACTGTTGT
14805728 AGC
196 AGC
* ** *
14805731 TTCAATCTATTTAACTGCAATGTTGGGGAAATAAGATTTACTGTCGTAGCTTCAATCTGTTCGAC
1 -TCAATCTATTTAACTGCAATGTCGGGGAAATAAGATTCGCTGTCGTAGCTTCAATCTGTTCCAC
* * * * * *
14805796 TGCACTGCCAAGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTATTTAATTGCAATGTCGAGGAA
65 TGCACCG-CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAA
*
14805861 ACAAGATTCGTCGTCGTAGCTTCAATCTGTTCTACTGCACCACCAAGGAAGTAAGATTCGCTG-T
129 ACAAGATTCGTCGTCGTAGCTTCAATCTGTTCTACTGCACCACCAAGGAAGTAAGATTCACTGTT
14805925 -T-G-
194 GTAGC
* * * *
14805927 TCAATCTATTTAACTGCAATGTCGGGGAAAAAATATTCGCCGTTGTAGCTTCAATCTGTTCCACT
1 TCAATCTATTTAACTGCAATGTCGGGGAAATAAGATTCGCTGTCGTAGCTTCAATCTGTTCCACT
14805992 GCACCGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAA
66 GCACCG-CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAA
*
14806057 CAAGATTCGTTGTCGTAGCTTCAATCTGTTC
130 CAAGATTCGTCGTCGTAGCTTCAATCTGTTC
14806088 CATTGCAAAG
Statistics
Matches: 309, Mismatches: 43, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
195 145 0.47
196 62 0.20
197 13 0.04
198 1 0.00
199 1 0.00
200 87 0.28
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (198 bp):
TCAATCTATTTAACTGCAATGTCGGGGAAATAAGATTCGCTGTCGTAGCTTCAATCTGTTCCACT
GCACCGCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAAC
AAGATTCGTCGTCGTAGCTTCAATCTGTTCTACTGCACCACCAAGGAAGTAAGATTCACTGTTGT
AGC
Found at i:14806095 original size:50 final size:50
Alignment explanation
Indices: 14805534--14806083 Score: 422
Period size: 50 Copynumber: 11.2 Consensus size: 50
14805524 GGTTCACCAT
* *
14805534 CTTCAATCTATTTAACTGTAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* * ** *
14805584 CTTCAATCTATTCCACTACACCG-CCGGGAAGTAAGATTCG-T-T-GTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* * *
14805630 CTTCAATCTA-TCTAACTGCAATGTTGGGGAAGCAAGATTCGAC-ATCGTAG
1 CTTCAATCTATTC-AACTGCAATGTCGGGGAAGTAAGATTCG-CTGTCGTAG
* * * * * * * * * *
14805680 CTTCAATCTGTTCTATTGCACTGCCAGGGTAGTGAGATTCACTGTTGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* * * **
14805730 CTTCAATCTATTTAACTGCAATGTTGGGGAAATAAGATTTACTGTCGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* * * * ** * * *
14805780 CTTCAATCTGTTCGACTGCACTGCCAAGGAAGCAAGATTCGTTGTTGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* * * **
14805830 CTTCAATCTATTTAATTGCAATGTCGAGGAAACAAGATTCG-TCGTCGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCT-GTCGTAG
* * **** **
14805880 CTTCAATCTGTTCTACTGCACCACCAAGGAAGTAAGATTCGCTGT--T-G
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* ** * * *
14805927 --TCAATCTATTTAACTGCAATGTCGGGGAAAAAATATTCGCCGTTGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* * ** * *
14805975 CTTCAATCTGTTCCACTGCACCGTCAGGGAAGTAAGATTCGCTGTTGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
* ** *
14806025 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCGTTGTCGTAG
1 CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
14806075 CTTCAATCT
1 CTTCAATCT
14806084 GTTCCATTGC
Statistics
Matches: 378, Mismatches: 107, Indels: 30
0.73 0.21 0.06
Matches are distributed among these distances:
45 32 0.08
46 20 0.05
47 17 0.04
48 3 0.01
49 19 0.05
50 284 0.75
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (50 bp):
CTTCAATCTATTCAACTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAG
Found at i:14811692 original size:4 final size:4
Alignment explanation
Indices: 14811683--14811740 Score: 116
Period size: 4 Copynumber: 14.5 Consensus size: 4
14811673 TATTATCAAA
14811683 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
14811731 ATGT ATGT AT
1 ATGT ATGT AT
14811741 ACATAGATAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:14815446 original size:41 final size:40
Alignment explanation
Indices: 14815401--14815502 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 40
14815391 TGATTCAGTA
14815401 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * *
14815442 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
14815483 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
14815503 AGCGCTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 51 0.93
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:14815517 original size:41 final size:41
Alignment explanation
Indices: 14815401--14815517 Score: 112
Period size: 41 Copynumber: 2.9 Consensus size: 41
14815391 TGATTCAGTA
* * * * *
14815401 CACCGGCACTTAGCCTGCTAGACA-TATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAGACACTA-AGCCTGAAGTGTTT
* * * *
14815442 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
*
14815483 CACCGGCAATAAGCCTGCTA-AGCGCTAAGCCTGAA
1 CACCGGCAATAAGCCTGCTAGA-CACTAAGCCTGAA
14815518 AATCTCAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.02
41 62 0.97
42 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
Found at i:14816554 original size:13 final size:13
Alignment explanation
Indices: 14816536--14816560 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14816526 CAATCAAATG
14816536 CACACAAAATAAA
1 CACACAAAATAAA
14816549 CACACAAAATAA
1 CACACAAAATAA
14816561 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:14821448 original size:19 final size:20
Alignment explanation
Indices: 14821405--14821452 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
14821395 ATTACAAAAT
*
14821405 AATTCAAAATAATTTTCATA
1 AATTCAAAATAACTTTCATA
*
14821425 AATTCAAAATAACTTTGA-A
1 AATTCAAAATAACTTTCATA
14821444 AATTCAAAA
1 AATTCAAAA
14821453 CATTTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.33
Consensus pattern (20 bp):
AATTCAAAATAACTTTCATA
Found at i:14821475 original size:18 final size:19
Alignment explanation
Indices: 14821442--14821478 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14821432 AATAACTTTG
14821442 AAAATTCAAAACATTTATA
1 AAAATTCAAAACATTTATA
*
14821461 AAAATTCCAAA-ATTTATA
1 AAAATTCAAAACATTTATA
14821479 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATTCAAAACATTTATA
Found at i:14821504 original size:20 final size:20
Alignment explanation
Indices: 14821479--14821516 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14821469 AAAATTTATA
*
14821479 TTTTTTAAAAAATTCTAATT
1 TTTTTTAAAAAATCCTAATT
14821499 TTTTTTAAAAAATCCTAA
1 TTTTTTAAAAAATCCTAA
14821517 AAAATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTTTAAAAAATCCTAATT
Found at i:14837840 original size:324 final size:324
Alignment explanation
Indices: 14837244--14838212 Score: 1704
Period size: 324 Copynumber: 3.0 Consensus size: 324
14837234 TCCTTTGGAG
**
14837244 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCAGGAAGGCAT
1 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
* * **
14837309 TTACTCAAGACCAGTTGCTATATGGCTAAATTACCCCATACAACGGTAAGTGTCTCAACCTCCTC
66 TTACTC--GACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTC
*
14837374 TGTTGCTTGCTTGAAATAAAATAAAAAACACTGTGATTTCCCTTCTCTACGTTATTATCCCTCTA
129 TGTTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACGTTATTATCCCTCTA
14837439 AAATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGACAGAAATT
194 AAATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGACAGAAATT
*
14837504 ATTGTGTTGATACAATGATTGTTTCCAAGATGAAGAGACAGAGTCAAAAACATGCCAGGGTAAAA
259 ATTGTCTTGATACAATGATTGTTTCCAAGATGAAGAGACAGAGTCAAAAACATGCCAGGGTAAAA
14837569 T
324 T
* *
14837570 AAAAAGGTAACCACGTATGGGTAAAGCCCCAAGGTTATTTAAGATTAAACTGATCATAAAGGCAT
1 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
* *
14837635 TTTCTCGACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCTTCTG
66 TTACTCGACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTCTG
*
14837700 TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTTTCTACGTTATTATCCCTCTAAA
131 TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACGTTATTATCCCTCTAAA
*
14837765 ATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATAGACAGAAATTAT
196 ATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGACAGAAATTAT
*
14837830 TGTCTTGATACAATGATTGTTTCCAAGATGAAGAGACACAGTCAAAAACATGCCAGGGTAAAAT
261 TGTCTTGATACAATGATTGTTTCCAAGATGAAGAGACAGAGTCAAAAACATGCCAGGGTAAAAT
*
14837894 AAAAAGGTAACCACTTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
1 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
* * * *
14837959 TTACTCGACCAGTTCCTATATGTATAAATTACCCCAGACAATAATAAGTGTCTCAACCTCCTCCG
66 TTACTCGACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTCTG
*
14838024 TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACATTATTATCCCTCTAAA
131 TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACGTTATTATCCCTCTAAA
*
14838089 ATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGATAGAAATTAT
196 ATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGACAGAAATTAT
* *
14838154 TGTCTTGATACAATGATTGTTTCCAAGATGACGAGAGAGAGTCAAAAACATGCCAGGGT
261 TGTCTTGATACAATGATTGTTTCCAAGATGAAGAGACAGAGTCAAAAACATGCCAGGGT
14838213 CTTCATCAAC
Statistics
Matches: 612, Mismatches: 31, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
324 546 0.89
326 66 0.11
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (324 bp):
AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
TTACTCGACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTCTG
TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACGTTATTATCCCTCTAAA
ATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGACAGAAATTAT
TGTCTTGATACAATGATTGTTTCCAAGATGAAGAGACAGAGTCAAAAACATGCCAGGGTAAAAT
Found at i:14845676 original size:22 final size:22
Alignment explanation
Indices: 14845648--14845692 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
14845638 ATTTAATTAC
*
14845648 ATTTTGATAGAATGTTGATATG
1 ATTTTGATAGAATGTTGACATG
14845670 ATTTTGATAGAATGTTGACATG
1 ATTTTGATAGAATGTTGACATG
14845692 A
1 A
14845693 AGAAGTGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.42
Consensus pattern (22 bp):
ATTTTGATAGAATGTTGACATG
Found at i:14847319 original size:52 final size:52
Alignment explanation
Indices: 14847261--14847400 Score: 190
Period size: 52 Copynumber: 2.7 Consensus size: 52
14847251 CTCCGCTATA
* * *
14847261 AGTATGTTATTTACTAAGGTTATAAAAGTATGAGTGATTAGGCTCCATTATG
1 AGTATGTTATTTACTAAGCTTTTAAAAGTGTGAGTGATTAGGCTCCATTATG
* * * * *
14847313 ATTATGTTCTTTACTAAGCTTTTAAAAGTGGGAGTGATTGGGCTCCGTTATG
1 AGTATGTTATTTACTAAGCTTTTAAAAGTGTGAGTGATTAGGCTCCATTATG
* *
14847365 AGTATGTTTTTTACTAAGTTTTTAAAAGTGTGAGTG
1 AGTATGTTATTTACTAAGCTTTTAAAAGTGTGAGTG
14847401 GTTTGGAATT
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (52 bp):
AGTATGTTATTTACTAAGCTTTTAAAAGTGTGAGTGATTAGGCTCCATTATG
Found at i:14847420 original size:52 final size:52
Alignment explanation
Indices: 14847261--14847422 Score: 132
Period size: 52 Copynumber: 3.1 Consensus size: 52
14847251 CTCCGCTATA
* * * ** *
14847261 AGTATGTTATTTACTAAGGTTATAAAAGTATGAGTGATTAGG-CTCCA-TTATG
1 AGTATGTTCTTTACTAAGCTTTTAAAAGTGGGAGTGATT-GGAAT-CAGTTATG
* ** *
14847313 ATTATGTTCTTTACTAAGCTTTTAAAAGTGGGAGTGATTGGGCTCCGTTATG
1 AGTATGTTCTTTACTAAGCTTTTAAAAGTGGGAGTGATTGGAATCAGTTATG
* * * * * *
14847365 AGTATGTTTTTTACTAAGTTTTTAAAAGTGTGAGTGGTTTGGAATTATTTA-G
1 AGTATGTTCTTTACTAAGCTTTTAAAAGTGGGAGT-GATTGGAATCAGTTATG
14847417 AGTATG
1 AGTATG
14847423 ATAATTGCTA
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
51 3 0.03
52 78 0.87
53 9 0.10
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (52 bp):
AGTATGTTCTTTACTAAGCTTTTAAAAGTGGGAGTGATTGGAATCAGTTATG
Found at i:14847820 original size:40 final size:41
Alignment explanation
Indices: 14847629--14847844 Score: 164
Period size: 40 Copynumber: 5.4 Consensus size: 41
14847619 GAACAATTTA
**
14847629 CAAGCTGTGTATC-GACAAAGCTCCTCCA-TGAG-TTAAGGAT
1 CAAGCTGTGTATCAG-TGAAGCTCC-CCAGTGAGCTTAAGGAT
* * * ** * *
14847669 -AAGTTGTGTATTAATGAAGCTCCCTTGTAAGCTTATGGA-
1 CAAGCTGTGTATCAGTGAAGCTCCCCAGTGAGCTTAAGGAT
* *
14847708 CAAGCTGTGTATCAATGAAGCTCCCCTGTGAGCTTATA-GAT
1 CAAGCTGTGTATCAGTGAAGCTCCCCAGTGAGCTTA-AGGAT
* * *
14847749 CAA-CTGTGTATTAGTAAAGCTCCTCTA-TGAGC-TAAGGAT
1 CAAGCTGTGTATCAGTGAAGCTCC-CCAGTGAGCTTAAGGAT
*
14847788 -AAGCTGTGGATCAGTGAAGCTCCCCACGTGAGCTTAAGTGAT
1 CAAGCTGTGTATCAGTGAAGCTCCCCA-GTGAGCTTAAG-GAT
*
14847830 GAAGCTGTGTATCAG
1 CAAGCTGTGTATCAG
14847845 CGAATCTCTC
Statistics
Matches: 138, Mismatches: 24, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
38 6 0.04
39 42 0.30
40 66 0.48
41 8 0.06
42 3 0.02
43 13 0.09
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
CAAGCTGTGTATCAGTGAAGCTCCCCAGTGAGCTTAAGGAT
Found at i:14852473 original size:17 final size:17
Alignment explanation
Indices: 14852448--14852482 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14852438 ACTTAGTACT
14852448 CAATCGCAGTCCAAGCA
1 CAATCGCAGTCCAAGCA
*
14852465 CAATTGCAGTCCAAGCA
1 CAATCGCAGTCCAAGCA
14852482 C
1 C
14852483 CATGCAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.34, G:0.17, T:0.14
Consensus pattern (17 bp):
CAATCGCAGTCCAAGCA
Found at i:14860071 original size:46 final size:46
Alignment explanation
Indices: 14860009--14860102 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
14859999 ATTGTGTGGC
* * *
14860009 GTTCATTATATTCCAAGGTTCTTATCATCCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
* *
14860055 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTTGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
14860101 GT
1 GT
14860103 CTTTTCTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
Found at i:14866312 original size:19 final size:19
Alignment explanation
Indices: 14866288--14866327 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14866278 TATGAATTAA
14866288 ATAATAT-TATATTATTATT
1 ATAATATAT-TATTATTATT
*
14866307 ATAATATATTGTTATTATT
1 ATAATATATTATTATTATT
14866326 AT
1 AT
14866328 TAACTAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
ATAATATATTATTATTATT
Done.