Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 49 of 185
Found at i:14866375 original size:17 final size:17
Alignment explanation
Indices: 14866353--14866387 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14866343 GAAATAAAAT
*
14866353 AAAAGAATAAAAGAAAC
1 AAAAGAAGAAAAGAAAC
14866370 AAAAGAAGAAAAGAAAC
1 AAAAGAAGAAAAGAAAC
14866387 A
1 A
14866388 GAGACCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.77, C:0.06, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAAGAAGAAAAGAAAC
Found at i:14867477 original size:45 final size:45
Alignment explanation
Indices: 14867408--14867508 Score: 157
Period size: 45 Copynumber: 2.2 Consensus size: 45
14867398 GCCGACTACT
* *
14867408 GTTACTATTACCGACTCAACACTTTGTGTGTTGAATACTGTTACC
1 GTTACTGTTACAGACTCAACACTTTGTGTGTTGAATACTGTTACC
* * *
14867453 GTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGTTACT
1 GTTACTGTTACAGACTCAACACTTTGTGTGTTGAATACTGTTACC
14867498 GTTACTGTTAC
1 GTTACTGTTAC
14867509 TGCTACCGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.41
Consensus pattern (45 bp):
GTTACTGTTACAGACTCAACACTTTGTGTGTTGAATACTGTTACC
Found at i:14867499 original size:6 final size:6
Alignment explanation
Indices: 14867488--14867521 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
14867478 GTGTGTTGAA
* *
14867488 TACTGT TACTGT TACTGT TACTGC TACCGT TACT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACT
14867522 ACTACCGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:14867505 original size:12 final size:12
Alignment explanation
Indices: 14867488--14867533 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
14867478 GTGTGTTGAA
*
14867488 TACTGTTACTGT
1 TACTGTTACTGC
14867500 TACTGTTACTGC
1 TACTGTTACTGC
* *
14867512 TACCGTTACTAC
1 TACTGTTACTGC
*
14867524 TACCGTTACT
1 TACTGTTACT
14867534 AATTACTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (12 bp):
TACTGTTACTGC
Found at i:14872132 original size:13 final size:13
Alignment explanation
Indices: 14872090--14872132 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
14872080 TAAGTTAGCT
14872090 TAGCCATAACATC
1 TAGCCATAACATC
* **
14872103 TAGCCTTCTCAATC
1 TAGCCATAAC-ATC
14872117 TAGCCATAACATC
1 TAGCCATAACATC
14872130 TAG
1 TAG
14872133 GTCGGGTTTG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.33, C:0.30, G:0.09, T:0.28
Consensus pattern (13 bp):
TAGCCATAACATC
Found at i:14875598 original size:75 final size:75
Alignment explanation
Indices: 14875387--14875610 Score: 303
Period size: 74 Copynumber: 3.0 Consensus size: 75
14875377 AAGGAAAACC
* * * * *
14875387 AGGATTATTCCCTTATTAATA-AAGACGAGAAATAGAAAGTTAGAAAAAGGAATTATATT-CTTC
1 AGGATTATTCCATTATTAATAGAA-AAGACAAATGGAAAGTTAGAAAAAGGAATTATATTATTTC
14875450 CAAAAGAATAT
65 CAAAAGAATAT
*
14875461 AGGATTATTCCATTATTAATAGAAAAGACAAATGGAAAGTTAGAAAAACGAATTATATTATTTCC
1 AGGATTATTCCATTATTAATAGAAAAGACAAATGGAAAGTTAGAAAAAGGAATTATATTATTTCC
14875526 AAAA-AATAT
66 AAAAGAATAT
* * * *
14875535 AGGATTATT-CATTTATTACTAGAGAATACAAATGGAAAGTTAGAAAAAAGGAATTGTATTATTT
1 AGGATTATTCCA-TTATTAATAGAAAAGACAAATGGAAAGTTAG-AAAAAGGAATTATATTATTT
14875599 CCAAAAGAATAT
64 CCAAAAGAATAT
14875611 TAATTTTCGT
Statistics
Matches: 134, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
73 2 0.01
74 93 0.69
75 34 0.25
76 5 0.04
ACGTcount: A:0.48, C:0.08, G:0.14, T:0.30
Consensus pattern (75 bp):
AGGATTATTCCATTATTAATAGAAAAGACAAATGGAAAGTTAGAAAAAGGAATTATATTATTTCC
AAAAGAATAT
Found at i:14875843 original size:138 final size:138
Alignment explanation
Indices: 14875586--14876145 Score: 831
Period size: 138 Copynumber: 4.1 Consensus size: 138
14875576 AGAAAAAAGG
* * * * * * **
14875586 AATTGTATTATTTCCAAAAGAATATTAATTTTCGTGTTTTTTATA-TTTAAAAAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
*
14875650 TATAA-TCGTTTATATTAATAAATTCGGTAAAATATATGCAATTAATATTTTGTATGAATCAAAT
66 TATAACTC-TTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
14875714 TCATATATT
130 TCATATATT
* * *
14875723 GATTATATTCTTTCCAAAAGAATATTACTTTCCATATCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
*
14875788 TATAACTCCTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTCTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
14875853 CATATATT
131 CATATATT
* *
14875861 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGA-TAGAAACTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCA-AAATTAATTA
* * *
14875925 ACATAACTGTTTATATTAATAAA-TCTGGTAAAATATATACAACTAATATTTTGTATGAATCAAA
65 ATATAACTCTTTATATTAATAAATTC-GGTAAAATATATACAATTAATATTTTGTATGAATCAAA
14875989 TTCATATATT
129 TTCATATATT
* * * *
14875999 AGTTATATTCTTTCCAAAAGAACATTAATTTCCATGTCTTTTATATTTTGACCGAAATCAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* * *
14876064 TATAAATGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTTGTATGAATCAAAC
66 TATAACTCTTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTTTGTATGAATCAAAT
14876129 TCATATATT
130 TCATATATT
14876138 AATTATAT
1 AATTATAT
14876146 CTATGTTCTC
Statistics
Matches: 383, Mismatches: 33, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
137 40 0.10
138 307 0.80
139 36 0.09
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
TATAACTCTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:14875909 original size:71 final size:71
Alignment explanation
Indices: 14875832--14876048 Score: 166
Period size: 71 Copynumber: 3.1 Consensus size: 71
14875822 TATACAATTA
14875832 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATG
1 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATG
14875897 TCTTTT
66 TCTTTT
* * * * * * * * **
14875903 ATATTTTG-ATAGAAACTAATT-A-ACA-TAACTGT-TTATATT--AATA-AATCTGGTAAAAT-
1 ATATTTTGTAT-GAATCAAATTCATATATTAATTATATTCT-TTCCAAAAGAATAT--TAATTTC
* ** *
14875959 -ATATACAACTA
62 CATGT-C-TTTT
* *
14875970 ATATTTTGTATGAATCAAATTCATATATTAGTTATATTCTTTCCAAAAGAACATTAATTTCCATG
1 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATG
14876035 TCTTTT
66 TCTTTT
14876041 ATATTTTG
1 ATATTTTG
14876049 ACCGAAATCA
Statistics
Matches: 100, Mismatches: 30, Indels: 32
0.62 0.19 0.20
Matches are distributed among these distances:
65 7 0.07
66 4 0.04
67 24 0.24
68 10 0.10
69 4 0.04
70 9 0.09
71 32 0.32
72 4 0.04
73 6 0.06
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (71 bp):
ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATG
TCTTTT
Found at i:14881914 original size:50 final size:50
Alignment explanation
Indices: 14881849--14882088 Score: 356
Period size: 50 Copynumber: 4.8 Consensus size: 50
14881839 TCCTATACTA
* * ** * *
14881849 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTG
* *
14881899 CCCATGCCATGTCCCAGACATGGTCTTAC-GGGGACCTCTTATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTG
* *
14881948 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTG
*
14881998 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTG
* *
14882048 CCAACGCCATGTCCCATACATGGTCTTACATGGGACCTCTT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
14882089 TACCCAAATG
Statistics
Matches: 173, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
49 42 0.24
50 131 0.76
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTG
Found at i:14881979 original size:99 final size:100
Alignment explanation
Indices: 14881849--14882087 Score: 363
Period size: 99 Copynumber: 2.4 Consensus size: 100
14881839 TCCTATACTA
* * * ** *
14881849 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCC
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATGCCATGTCCC
*
14881914 AGACATGGTCTTAC-GGGGACCTCTTATCTCGGTG
66 AGACATGGTCTTACAGGAGACCTCTTATCTCGGTG
* * *
14881948 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGGTGCCAATGCCATGTCCC
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATGCCATGTCCC
*
14882013 AGACATGGTCTTACATGAGACCTCTTATCTCGGTG
66 AGACATGGTCTTACAGGAGACCTCTTATCTCGGTG
*
14882048 CCAACGCCATGTCCCATACATGGTCTTACATGGGACCTCT
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14882088 TTACCCAAAT
Statistics
Matches: 126, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 70 0.56
100 56 0.44
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (100 bp):
CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATGCCATGTCCC
AGACATGGTCTTACAGGAGACCTCTTATCTCGGTG
Found at i:14883399 original size:18 final size:19
Alignment explanation
Indices: 14883359--14883399 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
14883349 CTTGCTATTT
*
14883359 TCCTTAGGCTTTACCTTAG
1 TCCTTAGCCTTTACCTTAG
*
14883378 -CCTTAGCCTTT-CCTTTG
1 TCCTTAGCCTTTACCTTAG
14883395 TCCTT
1 TCCTT
14883400 GTCCTTGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.10, C:0.32, G:0.12, T:0.46
Consensus pattern (19 bp):
TCCTTAGCCTTTACCTTAG
Found at i:14885762 original size:119 final size:117
Alignment explanation
Indices: 14885619--14885856 Score: 368
Period size: 119 Copynumber: 2.0 Consensus size: 117
14885609 GTCTTTTATA
** * * *
14885619 TTTTGACTGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAA
1 TTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAACTAA
* *
14885684 TATTTTGTATGAATCAAATTAATATATATTAATTATATTCTTCCCAAAAGAATG
66 TATTTTGTATGAATCAAATT--CATATATCAATTATATTCTTCCCAAAAGAATG
*
14885738 TTTTGACCAAAATTAATTCATATAACTATTTATATTAATAAATTCAGTAAAATATATACAACTAA
1 TTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAACTAA
* *
14885803 TATTTTGTATGAATCAAATTCATATATCAATTATATTCTTTCCAAAAGGATG
66 TATTTTGTATGAATCAAATTCATATATCAATTATATTCTTCCCAAAAGAATG
14885855 TT
1 TT
14885857 AATATCATGC
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
117 30 0.28
119 79 0.72
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (117 bp):
TTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAACTAA
TATTTTGTATGAATCAAATTCATATATCAATTATATTCTTCCCAAAAGAATG
Found at i:14887596 original size:22 final size:21
Alignment explanation
Indices: 14887561--14888378 Score: 293
Period size: 19 Copynumber: 42.7 Consensus size: 21
14887551 AAAGGGTATC
* *
14887561 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
14887582 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
14887605 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887624 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887643 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
14887662 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887681 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887700 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887719 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887738 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887757 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887776 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887795 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887814 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887833 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887852 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887871 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887890 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887909 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887928 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887947 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887966 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14887985 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888004 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888023 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888042 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888061 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888080 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888099 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888118 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888137 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888156 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888175 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888194 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888213 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888232 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888251 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888270 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888289 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888308 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888327 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888346 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14888365 TGCATATCATATCT
1 TACAAATCATATCT
14888379 AAGATTGCAT
Statistics
Matches: 705, Mismatches: 84, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
17 2 0.00
19 672 0.95
21 6 0.01
22 15 0.02
23 10 0.01
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:14887604 original size:23 final size:22
Alignment explanation
Indices: 14887561--14887618 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14887551 AAAGGGTATC
* *
14887561 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14887582 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
14887605 TGCATATCATATCT
1 TACAAATCATATCT
14887619 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14888391 original size:38 final size:38
Alignment explanation
Indices: 14887597--14888384 Score: 1567
Period size: 38 Copynumber: 20.7 Consensus size: 38
14887587 AATCATATCT
14887597 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
14887635 TCTAAGATTGCATATCATATCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887673 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887711 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887749 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887787 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887825 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887863 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887901 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887939 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14887977 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888015 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888053 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888091 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888129 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888167 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888205 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888243 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888281 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888319 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14888357 TCTAAGATTGCATATCATATCTAAGATT
1 TCTAAGATTGCATATCATATCTAAGATT
14888385 GCATATCCTC
Statistics
Matches: 748, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 748 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:14889476 original size:44 final size:44
Alignment explanation
Indices: 14889227--14890780 Score: 174
Period size: 44 Copynumber: 35.7 Consensus size: 44
14889217 GGATTACTGG
* ** * * *
14889227 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATC-CACCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGA-AAT
* ** ** *
14889272 CTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * *
14889316 CTTCAATCTATTCCACTGTTGCCCAAGGA-AGTAAAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TAAAA-T-CTGAAAT
* * ** * * **
14889359 CTTCAATGTACTCAACTGTAACCACAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
** * ** ** *
14889404 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * *
14889448 CTTCAATCTATTCCACTGTTGCCCAGGGA-AGTAGAAT-T--AGT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TAAAATCTGAAAT
* ** * * * **
14889489 GGCTTCAATATACTCCACTGTAACCATAGGGAGGTAAAATCCGCCAT
1 --CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
* * ** ** *
14889536 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* *
14889580 C-T---TC-A--CCACTGTTGCCCAGGGA-AGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* ** * * **
14889616 CTTCAATATACTCCACTGTAACCATAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
** * * *** * ** *
14889661 CTTTGATATGCTCCACAACTACTTAGGGAGAT-AAATCTAAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * * *
14889704 CTTCAATCTATTCCACTGTAGCCCAGGGA-AGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* ** * * **
14889747 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
* * ** ** *
14889792 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * *
14889836 CTTCAATCTATTCCACTGTTGCCCAGGGA-AGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* * * ** * * **
14889879 CTTCAATATACTCCAGTATAACCATAGGGAGGTAAAAT-TCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCT-GAAAT
* * ** ** *
14889924 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * * *
14889968 CTTCAATCTATTCCACTGTTGCCCA-GGAAAGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* * ** * * * * **
14890011 CTGCAATGTACTCCACTGTAACCATAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
* * ** **
14890056 CTTCGATCTGCTCCACTACTGCTTAGGGAG-----A--TGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * *
14890093 CTTCAATCTATTCCACTGTT-CCCAGGGA-AGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* ** * * *
14890135 CTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATC-CACAAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGA-AAT
* * * ** ** * *
14890180 CTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGACCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * * *
14890224 CTTCAATCTATTCCACTGTTGCCCA-GGAAAGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* * ** * * * * **
14890267 CTGCAATGTACTCCACTGTAACCATAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
* * ** ** *
14890312 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * * *
14890356 CTTCAATCTATTCCACTGTTGCCCA-GGAAAGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* * ** * * * * **
14890399 CTGCAATGTACTCCACTGTAACCATAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
* * ** ** *
14890444 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * * *
14890488 CTTCAATCTATTCCACTGTTGCCCA-GGAAAGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* * ** * * * * **
14890531 CTGCAATGTACTCCACTGTAACCATAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
* * ** ** *
14890576 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
* * * *
14890620 CTTCAATCTATTCCACTGTTGCCCA-GGAAAGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTGAAAT
* * ** * * * * **
14890663 CTGCAATGTACTCCACTGTAACCATAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTGAAAT
* * ** ** *
14890708 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
*
14890752 CTTCAATCTATTCCACTGTTGCCCAGGGA
1 CTTCAATCTACTCCACTGTTGCCCAGGGA
14890781 AGTAGAATTA
Statistics
Matches: 1001, Mismatches: 399, Indels: 219
0.62 0.25 0.14
Matches are distributed among these distances:
36 8 0.01
37 34 0.03
38 2 0.00
39 4 0.00
40 3 0.00
41 4 0.00
42 37 0.04
43 254 0.25
44 423 0.42
45 208 0.21
46 23 0.02
47 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTGAAAT
Found at i:14890226 original size:520 final size:521
Alignment explanation
Indices: 14889185--14890879 Score: 2781
Period size: 520 Copynumber: 3.2 Consensus size: 521
14889175 GTTCACGATT
* * * * *
14889185 TTCAACCTATTCCATTGCTGACCAGGG-AGATAGGATTACTGGCTTCAATGTACTCCACTGTAAC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAAC
*
14889249 CACAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
65 CACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
* * *
14889314 ATCTTCAATCTATTCCACTGTTGCCCAAGGAAGTAAAATTACTGGCTTCAATGTACTCAACTGTA
130 ATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
14889379 ACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
195 ACCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
* * * *
14889444 AAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTAGTGGCTTCAATATACTCCACTG
260 AAATCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTG
*
14889509 TAACCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAT-AAGAT
325 TAACCATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAA-AT
** * *
14889573 CTGAAATCT-TCACCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATATACTCCACTGTAA
389 CTTCAATCTAT-TCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * * * *
14889637 CCATAGGGAGGTAAAATCTGCCATCTTTGATATGCTCCACAACTACTTAGGGAGATAA-ATCTAA
453 CCATAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
14889701 AATC
518 AATC
*
14889705 TTCAATCTATTCCACTGTAGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14889770 ACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
* * *
14889835 TCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATATACTCCAGTATAA
131 TCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
14889900 CCATAGGGAGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
196 CCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
14889965 AATCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGT
261 AATCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGT
14890030 AACCATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAAATCT
326 AACCATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAAATCT
14890095 TCAATCTATTCCACTGTT-CCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
391 TCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
* * * * *
14890159 CAGAGAGGTAAAATCCACAATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGACCTGAAAT
456 TAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
14890224 C
521 C
* *
14890225 TTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
* * *
14890290 ATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
* *
14890355 TCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGTAA
131 TCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
14890420 CCATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
196 CCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
14890485 AATCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGT
261 AATCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGT
14890550 AACCATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
326 AACCATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTA-GG-G---AGA--T
* *
14890615 GAAATCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACT
384 GAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
14890680 GTAACCATA-AGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
449 GTAACCATAGA-GAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
14890744 TCTGAAATC
513 TCTGAAATC
14890753 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
* ** *
14890818 ACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCTGCTACTGCTTAGGGAGACAAGATCTG
66 ACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
14890880 CTATTTTTAA
Statistics
Matches: 1096, Mismatches: 66, Indels: 18
0.93 0.06 0.02
Matches are distributed among these distances:
519 90 0.08
520 747 0.68
521 7 0.01
522 1 0.00
525 3 0.00
527 27 0.02
528 221 0.20
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (521 bp):
TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
ACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
TCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
AATCTTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGT
AACCATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAAATCT
TCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
TAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAT
C
Found at i:14890900 original size:132 final size:132
Alignment explanation
Indices: 14889185--14890879 Score: 2767
Period size: 132 Copynumber: 13.0 Consensus size: 132
14889175 GTTCACGATT
* * * * *
14889185 TTCAACCTATTCCATTGCTGACCAGGG-AGATAGGATTACTGGCTTCAATGTACTCCACTGTAAC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * *
14889249 CACAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
65 CATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
14889314 ATC
130 ATC
* * *
14889317 TTCAATCTATTCCACTGTTGCCCAAGGAAGTAAAATTACTGGCTTCAATGTACTCAACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
* *
14889382 ACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14889447 TC
131 TC
* *
14889449 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTAGTGGCTTCAATATACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
14889514 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14889579 TC
131 TC
*
14889581 -T---TC-A--CCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATATACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
* * * * * *
14889639 ATAGGGAGGTAAAATCTGCCATCTTTGATATGCTCCACAACTACTTAGGGAGATAA-ATCTAAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14889703 TC
131 TC
*
14889705 TTCAATCTATTCCACTGTAGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14889770 ACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14889835 TC
131 TC
* * *
14889837 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATATACTCCAGTATAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14889902 ATAGGGAGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14889967 TC
131 TC
* *
14889969 TTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14890034 ATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTA-GG-G---AGA--TGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14890092 TC
131 TC
14890094 TTCAATCTATTCCACTGTT-CCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
* * * * * *
14890158 ACAGAGAGGTAAAATCCACAATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGACCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14890223 TC
131 TC
* *
14890225 TTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14890290 ATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14890355 TC
131 TC
* *
14890357 TTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14890422 ATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14890487 TC
131 TC
* *
14890489 TTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14890554 ATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14890619 TC
131 TC
* *
14890621 TTCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTACTGGCTGCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
*
14890686 ATAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
14890751 TC
131 TC
14890753 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
1 TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
* * * ** *
14890818 ACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCTGCTACTGCTTAGGGAGACAAGATCTG
66 ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
14890880 CTATTTTTAA
Statistics
Matches: 1473, Mismatches: 73, Indels: 34
0.93 0.05 0.02
Matches are distributed among these distances:
124 93 0.06
125 133 0.09
126 1 0.00
127 4 0.00
128 4 0.00
129 4 0.00
130 1 0.00
131 131 0.09
132 1100 0.75
133 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (132 bp):
TTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
ATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA
TC
Found at i:14896526 original size:19 final size:19
Alignment explanation
Indices: 14896502--14896612 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
14896492 AATCATATCT
*
14896502 TCTAAGATTGCATATCTTA
1 TCTAAGATTGCATATCATA
**
14896521 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
14896540 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
14896559 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
14896578 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14896597 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
14896613 CTCGAAGATT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14896549 original size:38 final size:38
Alignment explanation
Indices: 14896502--14896605 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
14896492 AATCATATCT
*
14896502 TCTAAGATTGCATATCTTATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
14896540 TCTAAGATTGCATATCATATCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
14896578 TCTAAGATTGCATATCATATCTAAGATT
1 TCTAAGATTGCATATCATATCTAAGATT
14896606 GCATATCCTC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:14896565 original size:57 final size:55
Alignment explanation
Indices: 14896495--14896623 Score: 170
Period size: 57 Copynumber: 2.3 Consensus size: 55
14896485 ATTACAAAAT
* *
14896495 CATATCTTCTAAGATTGCATATCT-TATCTAAGATTATATATCATATCTAAGATTG
1 CATATCTTCTAAGATTACATAT-TATATCTAAGATTACATATCATATCTAAGATTG
* *
14896550 CATATCATATCTAAGATTATATATTATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTACATATTATATCTAAGATTACATATCATATCTAAGATTG
* *
14896607 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
14896624 TGTTTCCATA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
55 15 0.23
56 2 0.03
57 48 0.74
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (55 bp):
CATATCTTCTAAGATTACATATTATATCTAAGATTACATATCATATCTAAGATTG
Found at i:14899095 original size:11 final size:11
Alignment explanation
Indices: 14899079--14899117 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
14899069 TAGAATATGC
14899079 CACAAAGACAT
1 CACAAAGACAT
* *
14899090 CACAAATACAC
1 CACAAAGACAT
*
14899101 CACAAAGGCAT
1 CACAAAGACAT
14899112 CACAAA
1 CACAAA
14899118 ATATGCCAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.54, C:0.31, G:0.08, T:0.08
Consensus pattern (11 bp):
CACAAAGACAT
Found at i:14899130 original size:23 final size:23
Alignment explanation
Indices: 14899072--14899143 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
14899062 GGCGTTATAG
*
14899072 AATATGCCACAAAGACATCAC-A
1 AATATGCCACAAAGGCATCACAA
**
14899094 AATACACCACAAAGGCATCACAA
1 AATATGCCACAAAGGCATCACAA
* *
14899117 AATATGCCAAAAAGGCATCACAT
1 AATATGCCACAAAGGCATCACAA
14899140 AATA
1 AATA
14899144 GATCTTATCA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 18 0.43
23 24 0.57
ACGTcount: A:0.51, C:0.25, G:0.10, T:0.14
Consensus pattern (23 bp):
AATATGCCACAAAGGCATCACAA
Found at i:14920774 original size:49 final size:49
Alignment explanation
Indices: 14920692--14920808 Score: 173
Period size: 49 Copynumber: 2.4 Consensus size: 49
14920682 ATCTCGGATG
* *
14920692 GCCTGACAATGATGGTTTTAACTATATACACACTTTACCATCCTAGGTT
1 GCCTGGCAACGATGGTTTTAACTATATACACACTTTACCATCCTAGGTT
*
14920741 GTCC-GGCAACGATGGTTTTCACTATATACACACTTTACCATCCTAGGTT
1 G-CCTGGCAACGATGGTTTTAACTATATACACACTTTACCATCCTAGGTT
* *
14920790 GCCTGGTAACAATGGTTTT
1 GCCTGGCAACGATGGTTTT
14920809 TACTGTTTGA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
48 2 0.03
49 57 0.93
50 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (49 bp):
GCCTGGCAACGATGGTTTTAACTATATACACACTTTACCATCCTAGGTT
Found at i:14921971 original size:21 final size:21
Alignment explanation
Indices: 14921923--14921991 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
14921913 ATATAATATG
*
14921923 ATTAATGATTAATTAA-CCTTA
1 ATTAATTA-TAATTAATCCTTA
*
14921944 ATTAATTATAATTAATCTTTA
1 ATTAATTATAATTAATCCTTA
* *
14921965 ATTAATTCATTATTAATCACTAA
1 ATTAATT-ATAATTAATC-CTTA
14921988 ATTA
1 ATTA
14921992 GTTTAAGGGA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 7 0.17
21 18 0.45
22 9 0.22
23 6 0.15
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.46
Consensus pattern (21 bp):
ATTAATTATAATTAATCCTTA
Found at i:14932134 original size:11 final size:12
Alignment explanation
Indices: 14932118--14932150 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14932108 GGACCCATAA
14932118 TGAATTAATTT-
1 TGAATTAATTTG
*
14932129 TGAATTTATTTG
1 TGAATTAATTTG
14932141 TGAATTAATT
1 TGAATTAATT
14932151 CACTTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (12 bp):
TGAATTAATTTG
Found at i:14937836 original size:29 final size:28
Alignment explanation
Indices: 14937804--14937872 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
14937794 CTTTTCTTTC
14937804 CCTTTTTTTTCAACTTGATCCTTTCCCTT
1 CCTTTTTTTTCAAC-TGATCCTTTCCCTT
* **
14937833 CCTTTCTTTCTCTTCTGATCCTTTCCCTT
1 CCTTT-TTTTTCAACTGATCCTTTCCCTT
14937862 -CTTTTCTTTTC
1 CCTTTT-TTTTC
14937873 TTTTTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
27 1 0.03
28 8 0.24
29 19 0.56
30 6 0.18
ACGTcount: A:0.06, C:0.33, G:0.03, T:0.58
Consensus pattern (28 bp):
CCTTTTTTTTCAACTGATCCTTTCCCTT
Found at i:14939074 original size:6 final size:6
Alignment explanation
Indices: 14939063--14939091 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14939053 CCTGTAATAG
14939063 CATATA CATATA CATATA CATATA CATAT
1 CATATA CATATA CATATA CATATA CATAT
14939092 CATTCAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (6 bp):
CATATA
Found at i:14940978 original size:21 final size:21
Alignment explanation
Indices: 14940954--14941023 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
14940944 AAATACCTTG
14940954 AAAATGATTCAAAATTATTCT
1 AAAATGATTCAAAATTATTCT
*
14940975 AAAATG-TGTCCAAAGTT-TTC-
1 AAAATGAT-T-CAAAATTATTCT
** *
14940995 AAAATGATGAAAAATTATTTT
1 AAAATGATTCAAAATTATTCT
14941016 AAAA-GATT
1 AAAATGATT
14941024 TTAATAAGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
19 5 0.13
20 12 0.32
21 15 0.39
22 6 0.16
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.36
Consensus pattern (21 bp):
AAAATGATTCAAAATTATTCT
Found at i:14942681 original size:54 final size:54
Alignment explanation
Indices: 14942485--14942700 Score: 247
Period size: 54 Copynumber: 4.0 Consensus size: 54
14942475 TATCTATACC
** *
14942485 GAAATACCGTCATAGGGTAAAATGACCGAAATACCACTATAAGGTAAAATGA-T
1 GAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGACT
* * *
14942538 CGAAATACCCCCATAGGGTAGAATGACCGAAATAACCCC-ATAGGGTAAAATGACC
1 -GAAATACCCCCATAGGGTAAAATGACCGAAAT-ACCCCTATAAGGTAAAATGACT
* * * *
14942593 AAAATACCCCCATAGGGTAAAATGACCAAAATACCCCTATATGGTAATATGACT
1 GAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGACT
* * ** ** *
14942647 GAAATACCCCTATAGGGTAAAATGACTGTTATACCCCTAGGAGATAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGACT
14942701 TTTATGGCCT
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 5 0.04
54 127 0.93
55 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (54 bp):
GAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGACT
Found at i:14942685 original size:27 final size:27
Alignment explanation
Indices: 14942482--14942672 Score: 242
Period size: 27 Copynumber: 7.1 Consensus size: 27
14942472 CGATATCTAT
*
14942482 ACCGAAATA-CCGTCATAGGGTAAAATG
1 ACCGAAATACCCCT-ATAGGGTAAAATG
* *
14942509 ACCGAAATACCACTATAAGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* * *
14942536 ATCGAAATACCCCCATAGGGTAGAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
14942563 ACCGAAATAACCCC-ATAGGGTAAAATG
1 ACCGAAAT-ACCCCTATAGGGTAAAATG
* *
14942590 ACCAAAATACCCCCATAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* * *
14942617 ACCAAAATACCCCTATATGGTAATATG
1 ACCGAAATACCCCTATAGGGTAAAATG
*
14942644 ACTGAAATACCCCTATAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
14942671 AC
1 AC
14942673 TGTTATACCC
Statistics
Matches: 143, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
26 5 0.03
27 131 0.92
28 7 0.05
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (27 bp):
ACCGAAATACCCCTATAGGGTAAAATG
Found at i:14942695 original size:81 final size:80
Alignment explanation
Indices: 14942482--14942699 Score: 228
Period size: 81 Copynumber: 2.7 Consensus size: 80
14942472 CGATATCTAT
* * ** * *
14942482 ACCGAAAT-ACCGTCATAGGGTAAAATGACCGAAATACCACTATAAGGTAAAATGATCGAAATAC
1 ACCGAAATAACC-CCATAGGGTAAAATGACCGAAATACCCCTAGGA-GTAAAATGACCAAAATAC
14942546 CCCCATAGGGTAGAATG
64 CCCCATAGGGTAGAATG
*
14942563 ACCGAAATAACCCCATAGGGTAAAATGACCAAAATACCCCCATAGG-GTAAAATGACCAAAATAC
1 ACCGAAATAACCCCATAGGGTAAAATGACCGAAATA-CCCC-TAGGAGTAAAATGACCAAAATAC
* *
14942627 CCCTATATGGTA-ATATG
64 CCCCATAGGGTAGA-ATG
* * **
14942644 ACTGAAAT-ACCCCTATAGGGTAAAATGACTGTTATACCCCTAGGAGATAAAATGAC
1 ACCGAAATAACCCC-ATAGGGTAAAATGACCGAAATACCCCTAGGAG-TAAAATGAC
14942700 TTTTATGGCC
Statistics
Matches: 116, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
79 4 0.03
80 11 0.09
81 93 0.80
82 6 0.05
83 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (80 bp):
ACCGAAATAACCCCATAGGGTAAAATGACCGAAATACCCCTAGGAGTAAAATGACCAAAATACCC
CCATAGGGTAGAATG
Found at i:14943128 original size:28 final size:29
Alignment explanation
Indices: 14943088--14943260 Score: 250
Period size: 28 Copynumber: 6.2 Consensus size: 29
14943078 TATTACACTG
*
14943088 CACTG-TTACTGTATTGGACTAAGGCCCA
1 CACTGATTACTGTATTGGGCTAAGGCCCA
14943116 CACTGATT-CTGTATTGGGCTAAGGCCCA
1 CACTGATTACTGTATTGGGCTAAGGCCCA
* * *
14943144 CA-TTATTACTGTATTAGGCCAAGGCCCA
1 CACTGATTACTGTATTGGGCTAAGGCCCA
*
14943172 CACTGATT-CTATATTGGGCTAAGGCCCA
1 CACTGATTACTGTATTGGGCTAAGGCCCA
14943200 CACTG-TTACTGTATTGGGCTAAGGCCCA
1 CACTGATTACTGTATTGGGCTAAGGCCCA
14943228 CACT-ATTACTGTATTGGGCTAAGGCCCA
1 CACTGATTACTGTATTGGGCTAAGGCCCA
*
14943256 TACTG
1 CACTG
14943261 TACTATCACT
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.05
28 117 0.91
29 6 0.05
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (29 bp):
CACTGATTACTGTATTGGGCTAAGGCCCA
Found at i:14945222 original size:82 final size:82
Alignment explanation
Indices: 14945085--14945239 Score: 256
Period size: 82 Copynumber: 1.9 Consensus size: 82
14945075 GTATTTTGCC
* * *
14945085 GTAACACCCCTAACCCCTCTCCATTATTAAATTAGGGTCACGGGCATTACTAACCAATCAAAACA
1 GTAACACCCCTAACCCCTCTACATCATCAAATTAGGGTCACGGGCATTACTAACCAATCAAAACA
14945150 TTTAATTTAAACTAAAT
66 TTTAATTTAAACTAAAT
* * *
14945167 GTAACACCCCTAACCCCTCTACATCGTCAGATTAGGGTCATGGGCATTACTAACCAATCAAAACA
1 GTAACACCCCTAACCCCTCTACATCATCAAATTAGGGTCACGGGCATTACTAACCAATCAAAACA
14945232 TTTAATTT
66 TTTAATTT
14945240 CATCGCAAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 67 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.28
Consensus pattern (82 bp):
GTAACACCCCTAACCCCTCTACATCATCAAATTAGGGTCACGGGCATTACTAACCAATCAAAACA
TTTAATTTAAACTAAAT
Found at i:14947627 original size:36 final size:36
Alignment explanation
Indices: 14947581--14947665 Score: 136
Period size: 36 Copynumber: 2.4 Consensus size: 36
14947571 CTAATACTTA
*
14947581 AACTACTCAACAATGACAACATCTAGAATACTAAAC
1 AACTACTCAACAATGACAACATCTAAAATACTAAAC
*
14947617 AACTGCTCAACAATGACAACATCTAAAATACTAAAC
1 AACTACTCAACAATGACAACATCTAAAATACTAAAC
*
14947653 AA-TACTAAACAAT
1 AACTACTCAACAAT
14947666 ACTAAAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
35 9 0.20
36 36 0.80
ACGTcount: A:0.52, C:0.24, G:0.05, T:0.20
Consensus pattern (36 bp):
AACTACTCAACAATGACAACATCTAAAATACTAAAC
Found at i:14947658 original size:10 final size:10
Alignment explanation
Indices: 14947643--14947671 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
14947633 CAACATCTAA
14947643 AATACTAAAC
1 AATACTAAAC
14947653 AATACTAAAC
1 AATACTAAAC
14947663 AATACTAAA
1 AATACTAAA
14947672 AATTATGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.17, G:0.00, T:0.21
Consensus pattern (10 bp):
AATACTAAAC
Found at i:14947954 original size:29 final size:30
Alignment explanation
Indices: 14947898--14947954 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
14947888 TTTTTTTCAT
14947898 TTTATTACTATATTATATAATATACATACA
1 TTTATTACTATATTATATAATATACATACA
14947928 TTTA-TACTAT-TTAT-TAATTATAACATA
1 TTTATTACTATATTATATAA-TAT-ACATA
14947955 AATATATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 3 0.12
28 7 0.28
29 11 0.44
30 4 0.16
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (30 bp):
TTTATTACTATATTATATAATATACATACA
Found at i:14947962 original size:29 final size:29
Alignment explanation
Indices: 14947903--14947962 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
14947893 TTCATTTTAT
* *
14947903 TACTATATTATATAATATACATACATTTA
1 TACTATATTATATAATATACATAAATATA
14947932 TACTAT-TTAT-TAATTATAACATAAATATA
1 TACTATATTATATAA-TAT-ACATAAATATA
14947961 TA
1 TA
14947963 TTAAGTTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 3 0.11
28 7 0.26
29 17 0.63
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (29 bp):
TACTATATTATATAATATACATAAATATA
Found at i:14947974 original size:21 final size:22
Alignment explanation
Indices: 14947939--14947982 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
14947929 TTATACTATT
*
14947939 TATTAATTATAACATAAATATA
1 TATTAAGTATAACATAAATATA
*
14947961 TATTAAGT-TAACATATATATA
1 TATTAAGTATAACATAAATATA
14947982 T
1 T
14947983 GACATATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (22 bp):
TATTAAGTATAACATAAATATA
Found at i:14948640 original size:23 final size:25
Alignment explanation
Indices: 14948602--14948648 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
14948592 TTTTAAACTG
*
14948602 CTATGTATATTATGTATGTTATGTA
1 CTATGTATATTATGTATGCTATGTA
14948627 CTAT-TATA-TATGTATGCTATGT
1 CTATGTATATTATGTATGCTATGT
14948649 TTACTGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.62
24 4 0.19
25 4 0.19
ACGTcount: A:0.28, C:0.06, G:0.15, T:0.51
Consensus pattern (25 bp):
CTATGTATATTATGTATGCTATGTA
Found at i:14948725 original size:65 final size:64
Alignment explanation
Indices: 14948695--14948816 Score: 154
Period size: 65 Copynumber: 1.9 Consensus size: 64
14948685 TTAAGTAATG
*
14948695 TTATGTATATTATTTATGTATATTTCTATGTTTGTTATGTGTTATATTACTGTTATGGTTGTATA
1 TTATGTATATT-TTTATGTATATTTCTATGTTTGTTATGTGTTATAGTACTGTTATGGTTGTATA
* * * * * * *
14948760 TTATGTATATTTTTATGTATGTTATGTATGTATATTATGTGGTATATTATTGTTATG
1 TTATGTATATTTTTATGTATATT-TCTATGTTTGTTATGTGTTATAGTACTGTTATG
14948817 TGTATGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
64 11 0.22
65 39 0.78
ACGTcount: A:0.24, C:0.02, G:0.16, T:0.58
Consensus pattern (64 bp):
TTATGTATATTTTTATGTATATTTCTATGTTTGTTATGTGTTATAGTACTGTTATGGTTGTATA
Found at i:14948768 original size:9 final size:9
Alignment explanation
Indices: 14948754--14948881 Score: 65
Period size: 9 Copynumber: 14.3 Consensus size: 9
14948744 CTGTTATGGT
14948754 TGTATATTA
1 TGTATATTA
14948763 TGTATATT-
1 TGTATATTA
14948771 T-T-TATGTA
1 TGTATAT-TA
14948779 TGT-TATGTA
1 TGTATAT-TA
14948788 TGTATATTA
1 TGTATATTA
*
14948797 TGTGGTA-TA
1 TGT-ATATTA
*
14948806 T-TATTGTTA
1 TGTA-TATTA
* *
14948815 TGTGTATGA
1 TGTATATTA
*
14948824 TTGTTTATTAA
1 -TGTATATT-A
14948835 TGT-TATGTA
1 TGTATAT-TA
14948844 TGTATATTA
1 TGTATATTA
*
14948853 TGTATGTTA
1 TGTATATTA
*
14948862 TGTAT-GTA
1 TGTATATTA
*
14948870 TGTATGTTA
1 TGTATATTA
14948879 TGT
1 TGT
14948882 TTAGCACTGT
Statistics
Matches: 95, Mismatches: 11, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
6 3 0.03
7 2 0.02
8 11 0.12
9 59 0.62
10 19 0.20
11 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (9 bp):
TGTATATTA
Found at i:14948841 original size:65 final size:65
Alignment explanation
Indices: 14948729--14948864 Score: 161
Period size: 65 Copynumber: 2.1 Consensus size: 65
14948719 TCTATGTTTG
* * *
14948729 TTATGTGTTATATTACTGTTATGGTTGTATATTATGTATATTTTTATGTATGT-TATGTATGTAT
1 TTATGTGGTATATTACTGTTATGGTTGTATATTATGTATAATGTTATGTATGTATAT-TATGTAT
14948793 A
65 A
* * *
14948794 TTATGTGGTATATTATTGTTAT-G-TGTATGATTGTTTATTAATGTTATGTATGTATATTATGTA
1 TTATGTGGTATATTACTGTTATGGTTGTAT-ATTATGTA-TAATGTTATGTATGTATATTATGTA
*
14948857 TG
64 TA
14948859 TTATGT
1 TTATGT
14948865 ATGTATGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
63 5 0.08
64 7 0.11
65 46 0.75
66 3 0.05
ACGTcount: A:0.24, C:0.01, G:0.18, T:0.57
Consensus pattern (65 bp):
TTATGTGGTATATTACTGTTATGGTTGTATATTATGTATAATGTTATGTATGTATATTATGTATA
Found at i:14948847 original size:4 final size:4
Alignment explanation
Indices: 14948838--14948881 Score: 52
Period size: 4 Copynumber: 10.2 Consensus size: 4
14948828 TTATTAATGT
*
14948838 TATG TATG TATAT TATG TATG TTATG TATG TATG TATG TTATG T
1 TATG TATG TAT-G TATG TATG -TATG TATG TATG TATG -TATG T
14948882 TTAGCACTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 24 0.69
5 11 0.31
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (4 bp):
TATG
Found at i:14948853 original size:22 final size:22
Alignment explanation
Indices: 14948754--14948876 Score: 64
Period size: 22 Copynumber: 5.7 Consensus size: 22
14948744 CTGTTATGGT
* * *
14948754 TGTATATTATGTATAT-TTTTA
1 TGTATGTTATGTATGTATATTA
14948775 TGTATGTTATGTATGTATATTA
1 TGTATGTTATGTATGTATATTA
* *
14948797 TGT-GGTATAT-TATTGT-TA-TG
1 TGTATGT-TATGTA-TGTATATTA
* * *
14948817 TGTATGATTGTTTAT-TAATGTTA
1 TGTATG-TTATGTATGT-ATATTA
*
14948840 TGTATGTATAT-TATGTATGTTA
1 TGTATGT-TATGTATGTATATTA
14948862 TGTATG-TATGTATGT
1 TGTATGTTATGTATGT
14948877 TATGTTTAGC
Statistics
Matches: 80, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
20 8 0.10
21 29 0.36
22 33 0.41
23 10 0.12
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (22 bp):
TGTATGTTATGTATGTATATTA
Found at i:14949500 original size:21 final size:24
Alignment explanation
Indices: 14949474--14949518 Score: 69
Period size: 21 Copynumber: 2.0 Consensus size: 24
14949464 TTATGTTGAG
14949474 AGTGGGGAAA-G-TACTGA-AAGT
1 AGTGGGGAAATGATACTGACAAGT
14949495 AGTGGGGAAATGATACTGACAAGT
1 AGTGGGGAAATGATACTGACAAGT
14949519 CATTAGGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.48
22 1 0.05
23 6 0.29
24 4 0.19
ACGTcount: A:0.38, C:0.07, G:0.36, T:0.20
Consensus pattern (24 bp):
AGTGGGGAAATGATACTGACAAGT
Found at i:14955273 original size:29 final size:30
Alignment explanation
Indices: 14955227--14955290 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
14955217 TGTATTTCAG
*
14955227 TGATGGACGATTTAATTGATGGTTGTATTT
1 TGATGGACGATTTAATTGATGGTTGAATTT
*
14955257 TGATGGAC-ACTTT-ATTGATGTTTGAATTT
1 TGATGGACGA-TTTAATTGATGGTTGAATTT
14955286 TGATG
1 TGATG
14955291 AATGGTTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.23, C:0.05, G:0.25, T:0.47
Consensus pattern (30 bp):
TGATGGACGATTTAATTGATGGTTGAATTT
Found at i:14957008 original size:33 final size:33
Alignment explanation
Indices: 14956968--14957093 Score: 128
Period size: 34 Copynumber: 3.8 Consensus size: 33
14956958 TTTTAAAAAA
**
14956968 TAAATTAGGGTTTAGTGTTTTTTTAAAATTAAT
1 TAAATTAGGGTTTAGTGTTTTTAAAAAATTAAT
* * * *
14957001 TAAATTAGGTTTTAGGGGTTTTAAATAAATAAAT
1 TAAATTAGGGTTTAGTGTTTTTAAA-AAATTAAT
* * * *
14957035 AAAATTATGATTTAGAGTTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAGTGTTTTTAA-AAAATTAAT
*
14957069 TAAATTAGGGTTTAGT-TTTTGAAAA
1 TAAATTAGGGTTTAGTGTTTTTAAAA
14957094 TAACTTTGTG
Statistics
Matches: 74, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
32 2 0.03
33 26 0.35
34 45 0.61
35 1 0.01
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (33 bp):
TAAATTAGGGTTTAGTGTTTTTAAAAAATTAAT
Found at i:14957380 original size:126 final size:126
Alignment explanation
Indices: 14957148--14957420 Score: 438
Period size: 126 Copynumber: 2.2 Consensus size: 126
14957138 AATAATGATT
* *
14957148 TTTTTCTTGCAGTAGTTCTTGAAAAAATTATTTTGAGAAGATAGTTCTGAACAAATAGTGTCAAA
1 TTTTTC-TGCAGTAGTTCTTGAAAAAATAATTTTAAGAAGATAGTTCTGAACAAATAGTGTCAAA
*
14957213 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACACTC
65 AACGCTTCAAGCAAGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACACTC
*
14957275 TTTTTCTGCAGTAGTTCTTGAAAAAATAATTTTAAGAAGATGGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTGCAGTAGTTCTTGAAAAAATAATTTTAAGAAGATAGTTCTGAACAAATAGTGTCAAAA
* * * * *
14957340 ATGGTTCAAGCAAGATGCACTGTTAGCAAAATTGATGAAAAAATCTCCCACGTGGACGCTC
66 ACGCTTCAAGCAAGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACACTC
**
14957401 TTTTTCTATAGTAGTTCTTG
1 TTTTTCTGCAGTAGTTCTTG
14957421 TTTGGCCTTA
Statistics
Matches: 135, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
126 129 0.96
127 6 0.04
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (126 bp):
TTTTTCTGCAGTAGTTCTTGAAAAAATAATTTTAAGAAGATAGTTCTGAACAAATAGTGTCAAAA
ACGCTTCAAGCAAGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACACTC
Found at i:14961101 original size:18 final size:18
Alignment explanation
Indices: 14961075--14961134 Score: 102
Period size: 18 Copynumber: 3.3 Consensus size: 18
14961065 GACTGGGAAA
*
14961075 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGTT
14961093 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGTT
*
14961111 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGTT
14961129 AGGATA
1 AGGATA
14961135 TACACCTGGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.42, C:0.07, G:0.28, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGTT
Found at i:14962587 original size:31 final size:30
Alignment explanation
Indices: 14962509--14962577 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
14962499 ATTAATTAAA
* *
14962509 GAGAGCTTTGAGAAATTTAAGGAAAATTTT
1 GAGAGTTTTGAGAAATTTAAAGAAAATTTT
14962539 GAGAGTTTTGAGAAATTTAAAGAGAAA-TTT
1 GAGAGTTTTGAGAAATTTAAAGA-AAATTTT
14962569 GAGAGTTTT
1 GAGAGTTTT
14962578 TTGCCAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 33 0.92
31 3 0.08
ACGTcount: A:0.39, C:0.01, G:0.25, T:0.35
Consensus pattern (30 bp):
GAGAGTTTTGAGAAATTTAAAGAAAATTTT
Found at i:14970005 original size:27 final size:27
Alignment explanation
Indices: 14969975--14970041 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
14969965 TTTTCGCCAG
*
14969975 TAGGCTTGGCGAAGTAAGGATCACTAA
1 TAGGCCTGGCGAAGTAAGGATCACTAA
* *
14970002 TAGGCCTGGCGAAGTAAGGATCGCTAG
1 TAGGCCTGGCGAAGTAAGGATCACTAA
14970029 TAGGCCTGGCGAA
1 TAGGCCTGGCGAA
14970042 TGGGGTCACC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.28, C:0.18, G:0.34, T:0.19
Consensus pattern (27 bp):
TAGGCCTGGCGAAGTAAGGATCACTAA
Found at i:14985343 original size:15 final size:15
Alignment explanation
Indices: 14985306--14985359 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
14985296 TATCCTTATA
* * *
14985306 CGAGCTACCTTTCTA
1 CGAGCTACCCTTGTG
* *
14985321 CGATCTACTCTTGTG
1 CGAGCTACCCTTGTG
*
14985336 CTAGCTACCCTTGTG
1 CGAGCTACCCTTGTG
14985351 CGAGCTACC
1 CGAGCTACC
14985360 TAAGGGTGTG
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.17, C:0.33, G:0.19, T:0.31
Consensus pattern (15 bp):
CGAGCTACCCTTGTG
Found at i:14985644 original size:23 final size:23
Alignment explanation
Indices: 14985618--14985672 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
14985608 CCTTCTTGGT
* * *
14985618 ATGATTTGTGAACCCTACTAAGA
1 ATGATATGCGAACCCTAATAAGA
14985641 ATGATATGCGAACCCTAATAAGA
1 ATGATATGCGAACCCTAATAAGA
14985664 ATGATATGC
1 ATGATATGC
14985673 AAACTTTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (23 bp):
ATGATATGCGAACCCTAATAAGA
Found at i:14996259 original size:54 final size:54
Alignment explanation
Indices: 14996197--14996317 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 54
14996187 ACCCTCAAAC
* * * * *
14996197 TGTTATAAAATGACTATTATGCC-CTCACGTGGTAAGATGACTATTATGCCTCTA
1 TGTTATAAAATGACGATTATGCCTCT-ACGTGATAAAATAACTATTATGCCCCTA
* * * *
14996251 TGTTATAAAATAACGGTTATGCCTCTATGTTATAAAATAACTATTATGCCCCTA
1 TGTTATAAAATGACGATTATGCCTCTACGTGATAAAATAACTATTATGCCCCTA
14996305 TGTTATAAAATGA
1 TGTTATAAAATGA
14996318 TTGTATGCTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 54 0.96
55 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (54 bp):
TGTTATAAAATGACGATTATGCCTCTACGTGATAAAATAACTATTATGCCCCTA
Found at i:14996270 original size:27 final size:27
Alignment explanation
Indices: 14996239--14996315 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
14996229 TAAGATGACT
14996239 ATTATGCCTCTATGTTATAAAATAACG
1 ATTATGCCTCTATGTTATAAAATAACG
* *
14996266 GTTATGCCTCTATGTTATAAAATAACT
1 ATTATGCCTCTATGTTATAAAATAACG
*
14996293 ATTATGCCCCTATGTTATAAAAT
1 ATTATGCCTCTATGTTATAAAAT
14996316 GATTGTATGC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (27 bp):
ATTATGCCTCTATGTTATAAAATAACG
Found at i:14996646 original size:34 final size:34
Alignment explanation
Indices: 14996592--14996658 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
14996582 GCATGTCTGA
* * *
14996592 ACTGTTACTATCACTGTAATGGGCTAGGGCCCAC
1 ACTGATACTATCACTATAATGGGCTAAGGCCCAC
*
14996626 ACTGATACTGTCACTATAATGGGCTAAGGCCCA
1 ACTGATACTATCACTATAATGGGCTAAGGCCCA
14996659 ACTAAACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (34 bp):
ACTGATACTATCACTATAATGGGCTAAGGCCCAC
Found at i:15003293 original size:87 final size:87
Alignment explanation
Indices: 15003147--15003432 Score: 342
Period size: 87 Copynumber: 3.3 Consensus size: 87
15003137 AAATATTAAA
* * *
15003147 GAAAATGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTAACAACCATCAACTATAAAAAGG
1 GAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATAAAAAGG
*
15003212 GATGGTGACGACCATCAAATAT
66 GATGGTGACGACCATCGAATAT
*
15003234 GAAAAGGGATAGTTTTGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATAAAAAGG
1 GAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATAAAAAGG
* * * *
15003299 GATAGTGGCGATCATCGATTGAT
66 GATGGTGACGACCATCGAAT-AT
* * * * * * * *
15003322 GAAAAGGGATGGCTCCGAAC-ATTGAATATGAAAAGGGACGGTGACGACCATCGAA-TATGAAAT
1 GAAAAGGGATAGTTTCG-ACTATCGACTATGAAAAGGGATGGTGACGACCATC-AACTATAAAAA
*
15003385 GGGATGGTGATGACCATCGAATAT
64 GGGATGGTGACGACCATCGAATAT
* * *
15003409 GAAAAGGGATGGTTACGACCATCG
1 GAAAAGGGATAGTTTCGACTATCG
15003433 TTTAGCACAC
Statistics
Matches: 169, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
86 2 0.01
87 96 0.57
88 67 0.40
89 4 0.02
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (87 bp):
GAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATAAAAAGG
GATGGTGACGACCATCGAATAT
Found at i:15003432 original size:29 final size:29
Alignment explanation
Indices: 15003162--15003432 Score: 269
Period size: 29 Copynumber: 9.3 Consensus size: 29
15003152 TGGATAGTTT
* * *
15003162 CGACTATCGACTATGAAAAGGGATGGTAA
1 CGACCATCGAATATGAAAAGGGATGGTGA
* *
15003191 CAACCATC-AACTATAAAAAGGGATGGTGA
1 CGACCATCGAA-TATGAAAAGGGATGGTGA
* * **
15003220 CGACCATCAAATATGAAAAGGGATAGTTT
1 CGACCATCGAATATGAAAAGGGATGGTGA
* * *
15003249 TGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCGAATATGAAAAGGGATGGTGA
* * *
15003278 CGACCATC-AACTATAAAAAGGGATAGTGG
1 CGACCATCGAA-TATGAAAAGGGATGGTGA
* * *
15003307 CGATCATCGATTGATGAAAAGGGATGGCT-C
1 CGACCATCGAAT-ATGAAAAGGGATGG-TGA
* * *
15003337 CGAACATTGAATATGAAAAGGGACGGTGA
1 CGACCATCGAATATGAAAAGGGATGGTGA
*
15003366 CGACCATCGAATATGAAATGGGATGGTGA
1 CGACCATCGAATATGAAAAGGGATGGTGA
* *
15003395 TGACCATCGAATATGAAAAGGGATGGTTA
1 CGACCATCGAATATGAAAAGGGATGGTGA
15003424 CGACCATCG
1 CGACCATCG
15003433 TTTAGCACAC
Statistics
Matches: 194, Mismatches: 41, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
28 3 0.02
29 166 0.86
30 24 0.12
31 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.21
Consensus pattern (29 bp):
CGACCATCGAATATGAAAAGGGATGGTGA
Found at i:15009544 original size:19 final size:20
Alignment explanation
Indices: 15009504--15009553 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
15009494 ATTGCAAAAG
15009504 AAATTCAAAATAATTTTCAA
1 AAATTCAAAATAATTTTCAA
15009524 AAATTCAAAAT-ATTTAT-AA
1 AAATTCAAAATAATTT-TCAA
*
15009543 AAATTCCAAAT
1 AAATTCAAAAT
15009554 TTTCTATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATTCAAAATAATTTTCAA
Found at i:15012792 original size:77 final size:77
Alignment explanation
Indices: 15012665--15012826 Score: 297
Period size: 77 Copynumber: 2.1 Consensus size: 77
15012655 TGAGACAATC
*
15012665 TTAAAGTGTTATGTCAATAAAATTTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
1 TTAAAGTGTTATGCCAATAAAATTTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
15012730 CAAGTTCAATTA
66 CAAGTTCAATTA
*
15012742 TTAAAGTGTTATGCCAATAAAATTTTATATATTTTAAGTTCAAAGATTAAAATATATCTAATTGT
1 TTAAAGTGTTATGCCAATAAAATTTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
*
15012807 CAAGTTCAATTG
66 CAAGTTCAATTA
15012819 TTAAAGTG
1 TTAAAGTG
15012827 GACAAAAAAT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 82 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (77 bp):
TTAAAGTGTTATGCCAATAAAATTTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
CAAGTTCAATTA
Found at i:15015328 original size:29 final size:31
Alignment explanation
Indices: 15015272--15015330 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
15015262 TAAATAAATA
15015272 TATTATAATACTTTTATAACATGTAACTTTTT
1 TATTATAATACTTTTATAACA-GTAACTTTTT
* *
15015304 TATTATAATA-TTTTTTACCA-TAACTTT
1 TATTATAATACTTTTATAACAGTAACTTT
15015331 AAAAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.28
31 8 0.32
32 10 0.40
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (31 bp):
TATTATAATACTTTTATAACAGTAACTTTTT
Found at i:15016754 original size:41 final size:41
Alignment explanation
Indices: 15016669--15016987 Score: 294
Period size: 41 Copynumber: 7.8 Consensus size: 41
15016659 CCTTTCGGAT
*
15016669 CTTTAGTGGCGTTTTTTG-AAAA-CGCCGCTAATGC-TGGGG
1 CTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTTGGGG
* * *
15016708 ACTTTAGCGACGTTTTTGAAAAAGCACTGCTAATGCTTGGGG
1 -CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTTGGGG
* * * * *
15016750 CTTTAGCGGCTTTTTTGGAGAAGCGCCACTAATGCTCT-GAG
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT-TGGGG
* **
15016791 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC-AGAGTT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTTG-GGG
* * * **
15016832 CTTAAGCGGCACTTTTT-CAAAAGCGCCGCTAATGCTAT-GTT
1 CTTTAGCGGC-GTTTTTGAAAAAGCGCCGCTAATGCT-TGGGG
* **
15016873 CTTTAGCGGCGTTTTTG-AAAAGGGTCCGCTAATGCTTTTGG
1 CTTTAGCGGCGTTTTTGAAAAAGCG-CCGCTAATGCTTGGGG
* * *
15016914 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTAGGGTC
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTTGGG-G
*
15016956 CTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAA
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
15016988 AGACATTTTA
Statistics
Matches: 228, Mismatches: 37, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
39 6 0.03
40 25 0.11
41 151 0.66
42 46 0.20
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTTGGGG
Found at i:15017553 original size:20 final size:20
Alignment explanation
Indices: 15017523--15017652 Score: 145
Period size: 20 Copynumber: 6.3 Consensus size: 20
15017513 TTCCATGCGG
*
15017523 TTCAGCCCACTCGAGCTCAA
1 TTCAGCTCACTCGAGCTCAA
*
15017543 ATCAGCTCACTCGAGCTCAA
1 TTCAGCTCACTCGAGCTCAA
15017563 GGGTTCAGCTCACTCGAGCTCAA
1 ---TTCAGCTCACTCGAGCTCAA
*
15017586 TTCAGCTCACTTGAGCTCAA
1 TTCAGCTCACTCGAGCTCAA
*
15017606 GTT-AGCTCATTCGAGCTCAA
1 -TTCAGCTCACTCGAGCTCAA
* * * *
15017626 GTCAACTCCCACGAGCTCAA
1 TTCAGCTCACTCGAGCTCAA
15017646 TTCAGCT
1 TTCAGCT
15017653 TATTGAGCTC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.01
20 70 0.76
21 2 0.02
23 19 0.21
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (20 bp):
TTCAGCTCACTCGAGCTCAA
Found at i:15017568 original size:43 final size:42
Alignment explanation
Indices: 15017521--15017652 Score: 155
Period size: 43 Copynumber: 3.2 Consensus size: 42
15017511 ATTTCCATGC
*
15017521 GGTTCAGCCCACTCGAGCTCAAATCAGCTCACTCGAGCTCAA
1 GGTTCAGCTCACTCGAGCTCAAATCAGCTCACTCGAGCTCAA
* *
15017563 GGGTTCAGCTCACTCGAGCTCAATTCAGCTCACTTGAGCTCAA
1 -GGTTCAGCTCACTCGAGCTCAAATCAGCTCACTCGAGCTCAA
* * * * *
15017606 -GTT-AGCTCATTCGAGCTCAAGTCAACTCCCACGAGCTCAA
1 GGTTCAGCTCACTCGAGCTCAAATCAGCTCACTCGAGCTCAA
15017646 --TTCAGCT
1 GGTTCAGCT
15017653 TATTGAGCTC
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.03
40 35 0.44
41 3 0.04
43 39 0.49
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (42 bp):
GGTTCAGCTCACTCGAGCTCAAATCAGCTCACTCGAGCTCAA
Found at i:15019005 original size:7 final size:7
Alignment explanation
Indices: 15018993--15019067 Score: 55
Period size: 7 Copynumber: 10.6 Consensus size: 7
15018983 GCGTATCATT
15018993 AGGGTTA
1 AGGGTTA
15019000 AGGGTTTA
1 AGGG-TTA
15019008 AGGGTT-
1 AGGGTTA
*
15019014 AGACGTTA
1 AG-GGTTA
15019022 AGGGTTA
1 AGGGTTA
15019029 AGGGTTA
1 AGGGTTA
**
15019036 AAAGTTA
1 AGGGTTA
*
15019043 AGAGTT-
1 AGGGTTA
*
15019049 AGGGATTT
1 AGGG-TTA
*
15019057 AGGGTTT
1 AGGGTTA
15019064 AGGG
1 AGGG
15019068 ATTTAGGGGT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
6 5 0.09
7 39 0.68
8 13 0.23
ACGTcount: A:0.29, C:0.01, G:0.39, T:0.31
Consensus pattern (7 bp):
AGGGTTA
Found at i:15019029 original size:21 final size:21
Alignment explanation
Indices: 15018996--15019049 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
15018986 TATCATTAGG
* *
15018996 GTTAAGGGTTTAAGGGTTAGAC
1 GTTAAGGG-TTAAGGGTTAAAA
15019018 GTTAAGGGTTAAGGGTTAAAA
1 GTTAAGGGTTAAGGGTTAAAA
*
15019039 GTTAAGAGTTA
1 GTTAAGGGTTA
15019050 GGGATTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 21 0.72
22 8 0.28
ACGTcount: A:0.33, C:0.02, G:0.33, T:0.31
Consensus pattern (21 bp):
GTTAAGGGTTAAGGGTTAAAA
Found at i:15019060 original size:8 final size:8
Alignment explanation
Indices: 15019047--15019075 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
15019037 AAGTTAAGAG
15019047 TTAGGGAT
1 TTAGGGAT
15019055 TTAGGG-T
1 TTAGGGAT
15019062 TTAGGGAT
1 TTAGGGAT
15019070 TTAGGG
1 TTAGGG
15019076 GTCGGGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (8 bp):
TTAGGGAT
Found at i:15019067 original size:15 final size:15
Alignment explanation
Indices: 15019047--15019075 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15019037 AAGTTAAGAG
15019047 TTAGGGATTTAGGGT
1 TTAGGGATTTAGGGT
15019062 TTAGGGATTTAGGG
1 TTAGGGATTTAGGG
15019076 GTCGGGTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (15 bp):
TTAGGGATTTAGGGT
Found at i:15019275 original size:7 final size:7
Alignment explanation
Indices: 15019265--15019374 Score: 73
Period size: 7 Copynumber: 15.7 Consensus size: 7
15019255 TGGATTATGA
15019265 GTTTAGG
1 GTTTAGG
*
15019272 GTTTATG
1 GTTTAGG
* **
15019279 ATTTATA
1 GTTTAGG
*
15019286 GTTTATG
1 GTTTAGG
*
15019293 GTTTACG
1 GTTTAGG
15019300 GTTTAAGG
1 GTTT-AGG
15019308 G-TTAGG
1 GTTTAGG
* *
15019314 GTTCAAG
1 GTTTAGG
15019321 G-TTAGGG
1 GTTTA-GG
*
15019328 GTTAAGG
1 GTTTAGG
*
15019335 ATTTAGG
1 GTTTAGG
*
15019342 CTTTAGG
1 GTTTAGG
15019349 GTTTAGG
1 GTTTAGG
15019356 AG-TTAGG
1 -GTTTAGG
15019363 GTTTAGG
1 GTTTAGG
15019370 GTTTA
1 GTTTA
15019375 AATTAATTAG
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
6 7 0.09
7 68 0.84
8 6 0.07
ACGTcount: A:0.21, C:0.03, G:0.35, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:15019303 original size:14 final size:14
Alignment explanation
Indices: 15019249--15019304 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
15019239 ACTATTTAAA
*
15019249 GGTTTATGGATTAT
1 GGTTTATGGTTTAT
*
15019263 GAGTTTAGGGTTTAT
1 G-GTTTATGGTTTAT
* *
15019278 GATTTATAGTTTAT
1 GGTTTATGGTTTAT
*
15019292 GGTTTACGGTTTA
1 GGTTTATGGTTTA
15019305 AGGGTTAGGG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.21, C:0.02, G:0.27, T:0.50
Consensus pattern (14 bp):
GGTTTATGGTTTAT
Found at i:15019304 original size:21 final size:22
Alignment explanation
Indices: 15019249--15019304 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
15019239 ACTATTTAAA
*
15019249 GGTTTATGGATTATGAGTTTAG
1 GGTTTATGGTTTATGAGTTTAG
* *
15019271 GGTTTATGATTTAT-AGTTTAT
1 GGTTTATGGTTTATGAGTTTAG
*
15019292 GGTTTACGGTTTA
1 GGTTTATGGTTTA
15019305 AGGGTTAGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.21, C:0.02, G:0.27, T:0.50
Consensus pattern (22 bp):
GGTTTATGGTTTATGAGTTTAG
Found at i:15023179 original size:25 final size:25
Alignment explanation
Indices: 15023145--15023197 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
15023135 TTTCGGGAAA
*
15023145 AGCGCCGCTAAAGTTCTTGATCTAT
1 AGCGCCGCTAAAGGTCTTGATCTAT
*
15023170 AGCGCTGCTAAAGGTCTTGATCTAT
1 AGCGCCGCTAAAGGTCTTGATCTAT
15023195 AGC
1 AGC
15023198 TGTGCAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCGCCGCTAAAGGTCTTGATCTAT
Found at i:15023207 original size:25 final size:25
Alignment explanation
Indices: 15023145--15023207 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
15023135 TTTCGGGAAA
* * *
15023145 AGCGCCGCTAAAGTTCTTGATCTAT
1 AGCGCTGCAAAAGGTCTTGATCTAT
*
15023170 AGCGCTGCTAAAGGTCTTGATCTAT
1 AGCGCTGCAAAAGGTCTTGATCTAT
15023195 AGCTG-TGCAAAAG
1 AGC-GCTGCAAAAG
15023208 CGCTGCTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AGCGCTGCAAAAGGTCTTGATCTAT
Found at i:15023217 original size:36 final size:38
Alignment explanation
Indices: 15023170--15023362 Score: 156
Period size: 43 Copynumber: 4.7 Consensus size: 38
15023160 CTTGATCTAT
*
15023170 AGCGCTGCTAAAGGTCTTGATCTATAGC-TGT-GCAAA
1 AGCGCTGCTAAAGGTCTTGATCTATAGCTTGTAGAAAA
* *
15023206 AGCGCTGCTAAAGATCCTGATCTATAGCGGCGTTTGTAGAAAA
1 AGCGCTGCTAAAGGTCTTGATCTATA---GC--TTGTAGAAAA
15023249 AGCGCTGCTAAAGGTCTTGATCTATAGCGGCGTTTGTAGAAAA
1 AGCGCTGCTAAAGGTCTTGATCTATA---GC--TTGTAGAAAA
* * * *
15023292 AGCACCGCTAAAGGTCTTGATCTATAGCGGCATTTGTGGGAAA
1 AGCGCTGCTAAAGGTCTTGATCTATA---GC--TTGTAGAAAA
* *
15023335 AGCGCCGCTAAAGGTCCTGATCTATAGC
1 AGCGCTGCTAAAGGTCTTGATCTATAGC
15023363 AGTGTTTGTG
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
36 24 0.17
39 2 0.01
40 2 0.01
42 3 0.02
43 107 0.78
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (38 bp):
AGCGCTGCTAAAGGTCTTGATCTATAGCTTGTAGAAAA
Found at i:15023270 original size:43 final size:43
Alignment explanation
Indices: 15023203--15023454 Score: 344
Period size: 43 Copynumber: 5.9 Consensus size: 43
15023193 ATAGCTGTGC
* *
15023203 AAAAGCGCTGCTAAAGATCCTGATCTATAGCGGCGTTTGTAGA
1 AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTAGA
* *
15023246 AAAAGCGCTGCTAAAGGTCTTGATCTATAGCGGCGTTTGTAGA
1 AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTAGA
* * * * *
15023289 AAAAGCACCGCTAAAGGTCTTGATCTATAGCGGCATTTGTGGG
1 AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTAGA
* * *
15023332 AAAAGCGCCGCTAAAGGTCCTGATCTATAGCAGTGTTTGT-GC
1 AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTAGA
* *
15023374 AAAAGCGCCGCTAAAGGTCCTAATCTATAGCGGCGTTTGTGGA
1 AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTAGA
* * *
15023417 AAAAGCGCCACTAAAGGTCCTAATCTATAGCGGTGTTT
1 AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTT
15023455 ATTTCTAAAA
Statistics
Matches: 189, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 38 0.20
43 151 0.80
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTAGA
Found at i:15023414 original size:85 final size:85
Alignment explanation
Indices: 15023198--15023454 Score: 370
Period size: 85 Copynumber: 3.0 Consensus size: 85
15023188 GATCTATAGC
* * * *
15023198 TGTGCAAAAGCGCTGCTAAAGATCCTGATCTATAGCGGCGTTTGTAGAAAAAGCGCTGCTAAAGG
1 TGTGCAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
* *
15023263 TCTTGATCTATAGCGGCGTT
66 TCCTGATCTATAGCGGTGTT
* * * * *
15023283 TGTAGAAAAAGCACCGCTAAAGGTCTTGATCTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAAG
1 TGT-GCAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAG
*
15023348 GTCCTGATCTATAGCAGTGTT
65 GTCCTGATCTATAGCGGTGTT
* *
15023369 TGTGCAAAAGCGCCGCTAAAGGTCCTAATCTATAGCGGCGTTTGTGGAAAAAGCGCCACTAAAGG
1 TGTGCAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
*
15023434 TCCTAATCTATAGCGGTGTT
66 TCCTGATCTATAGCGGTGTT
15023454 T
1 T
15023455 ATTTCTAAAA
Statistics
Matches: 150, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
85 77 0.51
86 73 0.49
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (85 bp):
TGTGCAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
TCCTGATCTATAGCGGTGTT
Found at i:15027009 original size:85 final size:85
Alignment explanation
Indices: 15026864--15027019 Score: 258
Period size: 85 Copynumber: 1.8 Consensus size: 85
15026854 CCACTACTAT
* * *
15026864 TTTGCTGTTACTGCCACTTGTTGTGAGTGCAAAACATATTTGTAGATTAAACATACTGCCACTTG
1 TTTGCAGTTACTGCAACTTGTTGTGAGTGCAAAACATATTTGTAGATTAAACAAACTGCCACTTG
15026929 GTTCATGATCGAACCACATA
66 GTTCATGATCGAACCACATA
* * *
15026949 TTTGCAGTTACTGTAACTTGTTGTGAGTGCAGAACATATTTGTAGATTAAACAAATTGCCACTTG
1 TTTGCAGTTACTGCAACTTGTTGTGAGTGCAAAACATATTTGTAGATTAAACAAACTGCCACTTG
15027014 GTTCAT
66 GTTCAT
15027020 AATCAAATCT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 65 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (85 bp):
TTTGCAGTTACTGCAACTTGTTGTGAGTGCAAAACATATTTGTAGATTAAACAAACTGCCACTTG
GTTCATGATCGAACCACATA
Found at i:15029221 original size:57 final size:58
Alignment explanation
Indices: 15029132--15029288 Score: 235
Period size: 57 Copynumber: 2.7 Consensus size: 58
15029122 AAAAGAAGCT
15029132 TTTGTGGCTGATTCTATTTTATGAGAGCCTTTGTGGCTGATTCTGTTATATGAGAGCC
1 TTTGTGGCTGATTCTATTTTATGAGAGCCTTTGTGGCTGATTCTGTTATATGAGAGCC
* * * * *
15029190 -TTGTGGCTAATTCTATTTTATAAGAGCCTTTGTTGCTAAATCTGTTATATGAGAGCC
1 TTTGTGGCTGATTCTATTTTATGAGAGCCTTTGTGGCTGATTCTGTTATATGAGAGCC
* * *
15029247 TTTGTGGATGATTCTGTTATATGAGAGCCTTTGTGGCTGATT
1 TTTGTGGCTGATTCTATTTTATGAGAGCCTTTGTGGCTGATT
15029289 TTTTTATAAG
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 52 0.61
58 33 0.39
ACGTcount: A:0.20, C:0.13, G:0.24, T:0.43
Consensus pattern (58 bp):
TTTGTGGCTGATTCTATTTTATGAGAGCCTTTGTGGCTGATTCTGTTATATGAGAGCC
Found at i:15029296 original size:29 final size:29
Alignment explanation
Indices: 15029132--15029288 Score: 217
Period size: 29 Copynumber: 5.4 Consensus size: 29
15029122 AAAAGAAGCT
* *
15029132 TTTGTGGCTGATTCTATTTTATGAGAGCC
1 TTTGTGGCTGATTCTGTTATATGAGAGCC
15029161 TTTGTGGCTGATTCTGTTATATGAGAGCC
1 TTTGTGGCTGATTCTGTTATATGAGAGCC
* * * *
15029190 -TTGTGGCTAATTCTATTTTATAAGAGCC
1 TTTGTGGCTGATTCTGTTATATGAGAGCC
* * *
15029218 TTTGTTGCTAAATCTGTTATATGAGAGCC
1 TTTGTGGCTGATTCTGTTATATGAGAGCC
*
15029247 TTTGTGGATGATTCTGTTATATGAGAGCC
1 TTTGTGGCTGATTCTGTTATATGAGAGCC
15029276 TTTGTGGCTGATT
1 TTTGTGGCTGATT
15029289 TTTTTATAAG
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 24 0.22
29 87 0.78
ACGTcount: A:0.20, C:0.13, G:0.24, T:0.43
Consensus pattern (29 bp):
TTTGTGGCTGATTCTGTTATATGAGAGCC
Found at i:15029301 original size:29 final size:29
Alignment explanation
Indices: 15029124--15029301 Score: 182
Period size: 29 Copynumber: 6.2 Consensus size: 29
15029114 ATTTGTCGAA
* * *
15029124 AAGA-AGCTTTTGTGGCTGATTCTATTTT
1 AAGAGAGCCTTTGTGGCTGATTCTGTTAT
*
15029152 ATGAGAGCCTTTGTGGCTGATTCTGTTAT
1 AAGAGAGCCTTTGTGGCTGATTCTGTTAT
* * * *
15029181 ATGAGAGCC-TTGTGGCTAATTCTATTTT
1 AAGAGAGCCTTTGTGGCTGATTCTGTTAT
* * *
15029209 ATA-AGAGCCTTTGTTGCTAAATCTGTTAT
1 A-AGAGAGCCTTTGTGGCTGATTCTGTTAT
* *
15029238 ATGAGAGCCTTTGTGGATGATTCTGTTAT
1 AAGAGAGCCTTTGTGGCTGATTCTGTTAT
* * *
15029267 ATGAGAGCCTTTGTGGCTGATTTTTTTAT
1 AAGAGAGCCTTTGTGGCTGATTCTGTTAT
15029296 AAGAGA
1 AAGAGA
15029302 AAATTTGTGG
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
28 26 0.21
29 99 0.79
ACGTcount: A:0.22, C:0.12, G:0.24, T:0.42
Consensus pattern (29 bp):
AAGAGAGCCTTTGTGGCTGATTCTGTTAT
Found at i:15029414 original size:28 final size:28
Alignment explanation
Indices: 15029383--15029480 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
15029373 AATGGATAAA
15029383 TTTGTGGCTATCTTTGCTCATGGATGCC
1 TTTGTGGCTATCTTTGCTCATGGATGCC
* * * *
15029411 TTTGTGGCTATCGTTACTTATGGACGCC
1 TTTGTGGCTATCTTTGCTCATGGATGCC
* *
15029439 -TTGATGGCTATCTATTGTTCAAGGATGCC
1 TTTG-TGGCTATCT-TTGCTCATGGATGCC
* *
15029468 TCTATGGCTATCT
1 TTTGTGGCTATCT
15029481 ATGTCAAAGG
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
27 3 0.05
28 32 0.58
29 19 0.35
30 1 0.02
ACGTcount: A:0.15, C:0.20, G:0.23, T:0.41
Consensus pattern (28 bp):
TTTGTGGCTATCTTTGCTCATGGATGCC
Found at i:15029535 original size:60 final size:60
Alignment explanation
Indices: 15029470--15029595 Score: 191
Period size: 60 Copynumber: 2.1 Consensus size: 60
15029460 AGGATGCCTC
15029470 TATGGCTATCTATGTCAAAGGAAAGATTTCTAC-GACCACCTCCGAAAGTAAGGACACCTT
1 TATGGCTATCTATGTCAAAGGAAAGATTTCTACAG-CCACCTCCGAAAGTAAGGACACCTT
** * *
15029530 TATGGCTATCTATGTCAAAGGAAAGATTTCTACAGCCACCTTTGAAAGTAAGTACGCCTT
1 TATGGCTATCTATGTCAAAGGAAAGATTTCTACAGCCACCTCCGAAAGTAAGGACACCTT
*
15029590 CATGGC
1 TATGGC
15029596 GTAGTTTGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 59 0.98
61 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (60 bp):
TATGGCTATCTATGTCAAAGGAAAGATTTCTACAGCCACCTCCGAAAGTAAGGACACCTT
Found at i:15031561 original size:30 final size:30
Alignment explanation
Indices: 15031515--15031657 Score: 164
Period size: 30 Copynumber: 4.7 Consensus size: 30
15031505 GTATATGTTT
* * *
15031515 TATAAATTACCGAATTGATTTGTATAAAAA
1 TATACATTGCCGAATTGATTTGTATATAAA
* *
15031545 TATACATTGTCGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAAA
**
15031575 TATACATTATCGAATTGATTTGTATATAAA
1 TATACATTGCCGAATTGATTTGTATATAAA
* *
15031605 TATACATTGCCAAATTTGATTCGTATATGGAAA
1 TATACATTGCCGAA-TTGATTTGTATAT--AAA
15031638 TAT--ATTGCCGAATTGATTTG
1 TATACATTGCCGAATTGATTTG
15031658 AGCATTGGAT
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
30 71 0.73
31 20 0.21
33 6 0.06
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (30 bp):
TATACATTGCCGAATTGATTTGTATATAAA
Found at i:15031606 original size:60 final size:61
Alignment explanation
Indices: 15031515--15031657 Score: 189
Period size: 60 Copynumber: 2.4 Consensus size: 61
15031505 GTATATGTTT
* * *
15031515 TATAAATTACCGAATTGATTTGTATAAAAATATACATTGTCGAA-TTGATTTGTATATAGA
1 TATAAATTACCGAATTGATTTGTATAAAAATATACATTGCCAAATTTGATTCGTATATAGA
* * * *
15031575 TATACATTATCGAATTGATTTGTATATAAATATACATTGCCAAATTTGATTCGTATATGGA
1 TATAAATTACCGAATTGATTTGTATAAAAATATACATTGCCAAATTTGATTCGTATATAGA
* * *
15031636 AATATATTGCCGAATTGATTTG
1 TATAAATTACCGAATTGATTTG
15031658 AGCATTGGAT
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
60 39 0.55
61 32 0.45
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (61 bp):
TATAAATTACCGAATTGATTTGTATAAAAATATACATTGCCAAATTTGATTCGTATATAGA
Found at i:15036269 original size:6 final size:6
Alignment explanation
Indices: 15036258--15036292 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
15036248 CCCATATGGC
*
15036258 GAAGTT GAAGTT GAAGTT GAAGTT AAAGTT GAAGT
1 GAAGTT GAAGTT GAAGTT GAAGTT GAAGTT GAAGT
15036293 CTGTGCATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.31
Consensus pattern (6 bp):
GAAGTT
Found at i:15036752 original size:14 final size:15
Alignment explanation
Indices: 15036728--15036765 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
15036718 AAAGAGGCAA
15036728 GAAGAAGGAAAAGAG
1 GAAGAAGGAAAAGAG
15036743 GAAG-AGGAAAAGA-
1 GAAGAAGGAAAAGAG
15036756 GAACGAAGGA
1 GAA-GAAGGA
15036766 TGTGAAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.14
14 10 0.48
15 8 0.38
ACGTcount: A:0.58, C:0.03, G:0.39, T:0.00
Consensus pattern (15 bp):
GAAGAAGGAAAAGAG
Found at i:15045456 original size:25 final size:25
Alignment explanation
Indices: 15045427--15045499 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
15045417 GCTGTAAATG
* *
15045427 GTAAGTTCCTCCAAGCTGAATAAAA
1 GTAAGCTCCTCCGAGCTGAATAAAA
** **
15045452 GTAAGCTCCTTTGAGCTGAATAACG
1 GTAAGCTCCTCCGAGCTGAATAAAA
*
15045477 GTAAGCTCTTCCGAGCTGAATAA
1 GTAAGCTCCTCCGAGCTGAATAA
15045500 CGGNTCTTCC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (25 bp):
GTAAGCTCCTCCGAGCTGAATAAAA
Found at i:15045500 original size:25 final size:25
Alignment explanation
Indices: 15045440--15045530 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
15045430 AGTTCCTCCA
* *
15045440 AGCTGAATAAAAGTAAGCTCCTT-TG
1 AGCTGAATAACAGTAAGCT-CTTCCG
*
15045465 AGCTGAATAACGGTAAGCTCTTCCG
1 AGCTGAATAACAGTAAGCTCTTCCG
*
15045490 AGCTGAATAAC-G---GNTCTTCCG
1 AGCTGAATAACAGTAAGCTCTTCCG
*
15045511 AGCTGAAGAACAGTAAGCTC
1 AGCTGAATAACAGTAAGCTC
15045531 ATATGAGCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
21 18 0.33
22 1 0.02
24 4 0.07
25 32 0.58
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (25 bp):
AGCTGAATAACAGTAAGCTCTTCCG
Found at i:15049101 original size:14 final size:15
Alignment explanation
Indices: 15049077--15049114 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
15049067 AAAGAGGCAA
15049077 GAAGAAGGAAAAGAG
1 GAAGAAGGAAAAGAG
15049092 GAAG-AGGAAAAGA-
1 GAAGAAGGAAAAGAG
15049105 GAATGAAGGA
1 GAA-GAAGGA
15049115 GGTGAAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.14
14 10 0.48
15 8 0.38
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (15 bp):
GAAGAAGGAAAAGAG
Found at i:15052067 original size:506 final size:508
Alignment explanation
Indices: 15051358--15052475 Score: 1893
Period size: 506 Copynumber: 2.2 Consensus size: 508
15051348 GACAATTTCA
* * * *
15051358 AGTTAATAAAGATTAACTTTGATTTGGAAAAGGCGATAATAATTTTTTAGCAAAAATATGTAAAA
1 AGTTAATGAAGATTGACTTTGATTT-GAAAAAGCGATAATAATTTTGTAGCAAAAATATGTAAAA
*
15051423 TTTGATGTAAAATAAATGGAAGAAGATAAAATATGAGAATAAATAGGGAGGTGAAAGAAATTCTA
65 TTTGATGTAAAAGAAATGGAAGAAGATAAAATATGAGAATAAATAGGGAGGTGAAAGAAATTCTA
* *
15051488 TTTGGTTTTGGAGAGGAAACAAAATCCTATTCTTGTTGGAAAATTTTGATTAAATATCTAGGGTT
130 TTTGGTTTTGGAGAGGAAACAAAATCCTATTCCTATTGGAAAATTTTGATTAAATATCTAGGGTT
15051553 TGTGAACCCAAGGGTGACAAGAGTAATTTTCCTCTTGAACAATAATCCTCACGTTTAAATTTGAT
195 TGTGAACCCAAGGGTGACAAGAGTAATTTTCCTCTTGAACAATAATCCTCACGTTTAAATTTGAT
* *
15051618 TCGGGGTACCTAAAA-TGAGTCCTTGAAACGAGATTTAACAAGAATTAATAATGATTTTCAAGAT
260 TCAGGGCACCTAAAACT-AGTCCTTGAAACGAGATTTAACAAGAATTAATAATGATTTTCAAGAT
*
15051682 TTGTCAAGATTATTGAAAGATTCGATGAATAATCGAGAAAGATCATTTTAATCGATCGCAAGATT
324 TTGTCAAGATTATTGAAAGATTCGATGAATAATCGAGAAAGATCATTTTAATCAATCGCAAGATT
* * * * *
15051747 ATCGTTAGATAG-AAATATCT-AGGGTTTAGGGTCAACTTCAAGATTTTATGCATCCTTACCGCT
389 ATCGTTAGATAGAAAATATCTAAAGATTTAAGATCAACTTCAAGATTTTATGCATCCCTACCGCT
*
15051810 TTTTGGTAGAGATTGAGGGGTTTCTAACGACAATTTTAATTCCCGTAGAAAAACG
454 TCTTGGTAGAGATTGAGGGGTTTCTAACGACAATTTTAATTCCCGTAGAAAAACG
15051865 AGTTAATGAAGATTGACTTTGATTTAGAAAAAGCGATAATAATTTTGTAGCAAAAATATGTAAAA
1 AGTTAATGAAGATTGACTTTGATTT-GAAAAAGCGATAATAATTTTGTAGCAAAAATATGTAAAA
*
15051930 TTTGATGTAAAAGAAATGGAAGAAGATAAAATATGAGAAT-AATATGGAGGTGAAAGAAATTCTA
65 TTTGATGTAAAAGAAATGGAAGAAGATAAAATATGAGAATAAATAGGGAGGTGAAAGAAATTCTA
15051994 TTTGGTTTTGGAGAGGAAACAAAATCCTATTCCTATTGGAAAATTTTGATTAAATATCTAGGGTT
130 TTTGGTTTTGGAGAGGAAACAAAATCCTATTCCTATTGGAAAATTTTGATTAAATATCTAGGGTT
*
15052059 TGTGAACCCAAGGGTGACAGGAGTAATTTTCCTCTTGAACAATAATCCTCACGTTTAAATTTGAT
195 TGTGAACCCAAGGGTGACAAGAGTAATTTTCCTCTTGAACAATAATCCTCACGTTTAAATTTGAT
*
15052124 TTAGGGCACCTAAAACTAGTCCTTGAAACGAGATTTAACAAGAATTAATAATGATTTTCAAGATT
260 TCAGGGCACCTAAAACTAGTCCTTGAAACGAGATTTAACAAGAATTAATAATGATTTTCAAGATT
15052189 TGTCAAGATTATTGAAAGATTCGATGAATAATCGAGAAAGATCATTTTAATCAATCGCAAGATTA
325 TGTCAAGATTATTGAAAGATTCGATGAATAATCGAGAAAGATCATTTTAATCAATCGCAAGATTA
* * *
15052254 TCGTTAGATAGAAAATCTCTAAATATTTAAGATCAACTTCAAGATTTTATGCATCCCTACTGCTT
390 TCGTTAGATAGAAAATATCTAAAGATTTAAGATCAACTTCAAGATTTTATGCATCCCTACCGCTT
* * *
15052319 CTTGGTAGAGATTGAGGGGTTTCTAACGACAATTTTGATTCCTGTAGAAAAATG
455 CTTGGTAGAGATTGAGGGGTTTCTAACGACAATTTTAATTCCCGTAGAAAAACG
* * ** *
15052373 AGTTAATGAAGATTGACTTTGATTTGTGAAAAGCAATAATAATTCAGTAACAAAAATATGTAAAA
1 AGTTAATGAAGATTGACTTTGATTTG-AAAAAGCGATAATAATTTTGTAGCAAAAATATGTAAAA
*
15052438 TTTGATGTAAAAGAAATGGAAGAAGATAAAGTATGAGA
65 TTTGATGTAAAAGAAATGGAAGAAGATAAAATATGAGA
15052476 GAAAGGGAGT
Statistics
Matches: 575, Mismatches: 32, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
506 285 0.50
507 108 0.19
508 182 0.32
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (508 bp):
AGTTAATGAAGATTGACTTTGATTTGAAAAAGCGATAATAATTTTGTAGCAAAAATATGTAAAAT
TTGATGTAAAAGAAATGGAAGAAGATAAAATATGAGAATAAATAGGGAGGTGAAAGAAATTCTAT
TTGGTTTTGGAGAGGAAACAAAATCCTATTCCTATTGGAAAATTTTGATTAAATATCTAGGGTTT
GTGAACCCAAGGGTGACAAGAGTAATTTTCCTCTTGAACAATAATCCTCACGTTTAAATTTGATT
CAGGGCACCTAAAACTAGTCCTTGAAACGAGATTTAACAAGAATTAATAATGATTTTCAAGATTT
GTCAAGATTATTGAAAGATTCGATGAATAATCGAGAAAGATCATTTTAATCAATCGCAAGATTAT
CGTTAGATAGAAAATATCTAAAGATTTAAGATCAACTTCAAGATTTTATGCATCCCTACCGCTTC
TTGGTAGAGATTGAGGGGTTTCTAACGACAATTTTAATTCCCGTAGAAAAACG
Found at i:15053876 original size:41 final size:41
Alignment explanation
Indices: 15053826--15054030 Score: 202
Period size: 41 Copynumber: 5.0 Consensus size: 41
15053816 ATTATTGCTG
* *
15053826 AATTGCACATTCGCGCCCCTGTTTCTACTTCGATACCCCTA
1 AATTGCACATTCGTGCCCCTGTTTGTACTTCGATACCCCTA
* * ** * * *
15053867 AATTACACATGT-GTTCCTTTGTTTGTACTTCGGTACCCTTG
1 AATTGCACAT-TCGTGCCCCTGTTTGTACTTCGATACCCCTA
* *
15053908 AATTGCACATAT-GTGCACCTGTTTGTACTTCGTTACCCCCTA
1 AATTGCACAT-TCGTGCCCCTGTTTGTACTTCGATA-CCCCTA
* * *
15053950 AATTACACATGCGTGCCCCTGTTTGTACTTC-AGCACCCCTA
1 AATTGCACATTCGTGCCCCTGTTTGTACTTCGA-TACCCCTA
*
15053991 AATTGCACATACGTGCCCCTGTTTGTACTTC-AGTACCCCT
1 AATTGCACATTCGTGCCCCTGTTTGTACTTCGA-TACCCCT
15054031 GAATGTATTT
Statistics
Matches: 134, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
41 101 0.75
42 33 0.25
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.35
Consensus pattern (41 bp):
AATTGCACATTCGTGCCCCTGTTTGTACTTCGATACCCCTA
Found at i:15053995 original size:83 final size:82
Alignment explanation
Indices: 15053826--15054029 Score: 250
Period size: 83 Copynumber: 2.5 Consensus size: 82
15053816 ATTATTGCTG
* * * * **
15053826 AATTGCACAT-TCGCGCCCCTGTTTCTACTTCGATA-CCCCTAAATTACACATGTGTTCCTTTGT
1 AATTGCACATAT-GTGCCCCTGTTTGTACTTCG-TACCCCCTAAATTACACATGCGTGCCCCTGT
* * * *
15053889 TTGTACTTCGGTACCCTTG
64 TTGTACTTCAGCACCCCTA
*
15053908 AATTGCACATATGTGCACCTGTTTGTACTTCGTTACCCCCTAAATTACACATGCGTGCCCCTGTT
1 AATTGCACATATGTGCCCCTGTTTGTACTTCG-TACCCCCTAAATTACACATGCGTGCCCCTGTT
15053973 TGTACTTCAGCACCCCTA
65 TGTACTTCAGCACCCCTA
*
15053991 AATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
1 AATTGCACATATGTGCCCCTGTTTGTACTTC-GTACCCC
15054030 TGAATGTATT
Statistics
Matches: 105, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
82 29 0.28
83 75 0.71
84 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.34
Consensus pattern (82 bp):
AATTGCACATATGTGCCCCTGTTTGTACTTCGTACCCCCTAAATTACACATGCGTGCCCCTGTTT
GTACTTCAGCACCCCTA
Found at i:15054031 original size:20 final size:20
Alignment explanation
Indices: 15053965--15054031 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
15053955 CACATGCGTG
*
15053965 CCCCTGTTTGTACTTCAGCA
1 CCCCTGTTTGTACTTCAGTA
** * * *
15053985 CCCCTAAATTGCACAT-ACGTG
1 CCCCT-GTTTGTACTTCA-GTA
15054006 CCCCTGTTTGTACTTCAGTA
1 CCCCTGTTTGTACTTCAGTA
15054026 CCCCTG
1 CCCCTG
15054032 AATGTATTTT
Statistics
Matches: 33, Mismatches: 11, Indels: 6
0.66 0.22 0.12
Matches are distributed among these distances:
20 20 0.61
21 13 0.39
ACGTcount: A:0.18, C:0.36, G:0.15, T:0.31
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCAGTA
Found at i:15064616 original size:12 final size:12
Alignment explanation
Indices: 15064583--15064624 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
15064573 GGACACATGA
15064583 CCGTGTCC-TACC
1 CCGTGTCCTTA-C
15064595 CCGTGTCCTTAC
1 CCGTGTCCTTAC
*
15064607 CCGTGTCCTTGC
1 CCGTGTCCTTAC
15064619 CCGTGT
1 CCGTGT
15064625 AACATTAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
12 26 0.93
13 2 0.07
ACGTcount: A:0.05, C:0.43, G:0.21, T:0.31
Consensus pattern (12 bp):
CCGTGTCCTTAC
Found at i:15068111 original size:102 final size:102
Alignment explanation
Indices: 15067932--15068129 Score: 317
Period size: 102 Copynumber: 1.9 Consensus size: 102
15067922 ATATAAAGGG
*
15067932 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTAA
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTAA
* **
15067997 ATGTGAAGGGGGTTACTAAGTGTTGATTCCCCCAAGC
66 ATGTGAAAGGGGTTACTAAGTACTGATTCCCCCAAGC
* *
15068034 GGTTGCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTTA-TCTCACCGTATCTTA
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTC-CACCGTATCTTA
*
15068098 AATGTGAAAGGGGTTGCTAAGTACTGATTCCC
65 AATGTGAAAGGGGTTACTAAGTACTGATTCCC
15068130 TGATTCATTG
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
101 2 0.02
102 86 0.98
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (102 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTAA
ATGTGAAAGGGGTTACTAAGTACTGATTCCCCCAAGC
Found at i:15068168 original size:75 final size:76
Alignment explanation
Indices: 15068034--15068242 Score: 278
Period size: 77 Copynumber: 2.7 Consensus size: 76
15068024 TCCCCCAAGC
* *
15068034 GGTTGCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTTATCTCACCGTA-TCTTA
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATC-CACCGTATTCTTA
15068098 AATGTG-AAAGG
65 AATGTGAAAAGG
* * * * * *
15068109 GGTTGCTAAGTACTGATTCCCTGATTCATTGGTGGTTGCTAAGTGCTGATTCCATCGTATTTTTG
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGA-TCCACCGTATTCTTA
15068174 AATGTGAAAAGG
65 AATGTGAAAAGG
* * *
15068186 GGTTGCTAAGTGGTGATTCCCCGAATCATTGGTGCTTGCTAAGTACTGAATCCACCG
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTG-ATCCACCG
15068243 ATAACAGATA
Statistics
Matches: 115, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
75 50 0.43
76 11 0.10
77 53 0.46
78 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (76 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCACCGTATTCTTAA
ATGTGAAAAGG
Found at i:15073900 original size:42 final size:41
Alignment explanation
Indices: 15073842--15074069 Score: 203
Period size: 42 Copynumber: 5.4 Consensus size: 41
15073832 CATTGGATAA
* *
15073842 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGACTTT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTT
*
15073883 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCT-TTG-ATTGCG
1 AAAGG-GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGAATT--T
* * * *
15073927 AAAGGGGCTGCTATGTGCTGATTCCCCGTATTACTGAATAT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTT
* * * *
15073968 AAAGGTGGTTGCTAAGTGCTGAATCCACCGTACTT-TTTACTGTG
1 AAAGG-GGTTGCTAAGTGCTGATTCC-CCGTA-TTATTGAAT-TT
* * *
15074012 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTT
*
15074053 -AAGGTGGTTGTTAAGTG
1 AAAGG-GGTTGCTAAGTG
15074070 TTGAATCCAC
Statistics
Matches: 149, Mismatches: 25, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
40 4 0.03
41 23 0.15
42 55 0.37
43 54 0.36
44 13 0.09
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (41 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTT
Found at i:15073950 original size:43 final size:41
Alignment explanation
Indices: 15073842--15074043 Score: 189
Period size: 43 Copynumber: 4.8 Consensus size: 41
15073832 CATTGGATAA
* *
15073842 AAAGGGGTTGCTAAGTGCTGATTCCCCGAAT-TATTGACTTT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCTATTGA-TTG
15073883 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCT-TTGATTGCG
1 AAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCTATTGATT--G
* * *
15073927 AAAGGGGCTGCTATGTGCTGATTCCCCGTAT-TACTGAATAT-
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCTATTG-AT-TG
* * *
15073968 AAAGGTGGTTGCTAAGTGCTGAATCCACCGTA-CTTTTTACTGTG
1 AAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCTATTGA-T-TG
*
15074012 AAAGGGGTTGCTATGTGCTGATTCCCCGTATC
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATC
15074044 ACTGAATTTA
Statistics
Matches: 133, Mismatches: 14, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
41 11 0.08
42 53 0.40
43 57 0.43
44 12 0.09
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (41 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCTATTGATTG
Found at i:15073985 original size:85 final size:84
Alignment explanation
Indices: 15073842--15074081 Score: 329
Period size: 85 Copynumber: 2.8 Consensus size: 84
15073832 CATTGGATAA
* * * * *
15073842 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGACTTTAAAGGTGGTTGCTAAGTGCTGATT
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGA-ATTAAAGGTGGTTGCTAAGTGCTGAAT
*
15073907 CCACCGTA-TCTTTGATTGCG
65 CCACCGTACT-TTTGACTGCG
*
15073927 AAAGGGGCTGCTATGTGCTGATTCCCCGTATTACTGAATATAAAGGTGGTTGCTAAGTGCTGAAT
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAAT-TAAAGGTGGTTGCTAAGTGCTGAAT
* *
15073992 CCACCGTACTTTTTACTGTG
65 CCACCGTACTTTTGACTGCG
* * * *
15074012 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTTAAGGTGGTTGTTAAGTGTTGAATC
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGAATC
15074077 CACCG
66 CACCG
15074082 AGTAACGGAT
Statistics
Matches: 139, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
84 29 0.21
85 109 0.78
86 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (84 bp):
AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGAATC
CACCGTACTTTTGACTGCG
Found at i:15076241 original size:33 final size:33
Alignment explanation
Indices: 15076164--15076229 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
15076154 AAGTGTTGCC
15076164 CATTAATATTAAATGTGACCCCTGTTTTCAAGT
1 CATTAATATTAAATGTGACCCCTGTTTTCAAGT
*
15076197 CATTAACATTAAATGTGACCCCTGTTTTCAAGT
1 CATTAATATTAAATGTGACCCCTGTTTTCAAGT
15076230 TTTTGATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (33 bp):
CATTAATATTAAATGTGACCCCTGTTTTCAAGT
Found at i:15087600 original size:17 final size:17
Alignment explanation
Indices: 15087578--15087611 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15087568 GATAAATATA
*
15087578 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
15087595 TATTGTCATTACATTTT
1 TATTGTCATTACATTTT
15087612 CATGTTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:15089208 original size:27 final size:27
Alignment explanation
Indices: 15089178--15089252 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
15089168 AAATTGTACA
* *
15089178 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGAT
* *
15089205 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGAT
15089232 GCACTAAGTGTGCGAATTGAC
1 GCACTAAGTGTGCGAATTGAC
15089253 CATGCACGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGAT
Found at i:15090914 original size:40 final size:40
Alignment explanation
Indices: 15090813--15090920 Score: 198
Period size: 40 Copynumber: 2.7 Consensus size: 40
15090803 GCAAACACAT
* *
15090813 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
15090853 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
15090893 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
15090921 TCCAATGCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:15102434 original size:24 final size:26
Alignment explanation
Indices: 15102383--15102436 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
15102373 AATTATGGCT
15102383 TCAAACACAGACATATACTTATATAC
1 TCAAACACAGACATATACTTATATAC
15102409 TCAAAC-CA-ACATTATACTTATA-AC
1 TCAAACACAGACA-TATACTTATATAC
15102433 TCAA
1 TCAA
15102437 TTTACAATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 9 0.33
25 12 0.44
26 6 0.22
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (26 bp):
TCAAACACAGACATATACTTATATAC
Found at i:15109025 original size:3 final size:3
Alignment explanation
Indices: 15109017--15109081 Score: 78
Period size: 3 Copynumber: 21.3 Consensus size: 3
15109007 TATTGCTATC
* *
15109017 ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT -TGT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
*
15109062 ATTT ATT ATT ATT ACT ATT A
1 A-TT ATT ATT ATT ATT ATT A
15109082 ATAATAACGT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
2 1 0.02
3 49 0.92
4 3 0.06
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:15109058 original size:15 final size:15
Alignment explanation
Indices: 15108995--15109072 Score: 86
Period size: 15 Copynumber: 5.1 Consensus size: 15
15108985 GTTATTTTTG
* *
15108995 TACTCTTATAATTAT
1 TACTATTATTATTAT
* *
15109010 TGCTATCATTATTAT
1 TACTATTATTATTAT
*
15109025 TATTATTATTATTAT
1 TACTATTATTATTAT
15109040 TACTATTATTATT-T
1 TACTATTATTATTAT
15109054 GTACTATTATTTATTAT
1 -TACTATTA-TTATTAT
15109071 TA
1 TA
15109073 TTACTATTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
14 1 0.02
15 43 0.83
16 7 0.13
17 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (15 bp):
TACTATTATTATTAT
Found at i:15114438 original size:40 final size:40
Alignment explanation
Indices: 15114420--15114644 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
15114410 AAGTGACCAT
15114420 ATCCGGACTAAGATCCGAAGGCATTT-TGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
*
15114459 ATCCGGACTAAGATCTGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
*
15114499 ATTCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
* * * *
15114539 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
* * *
15114578 ATCC-GAGTTAAG-TCCCGAAGGCAATTGTGCGAGTTACTATA
1 ATCCGGA-CTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
* *
15114619 A-CCGGGCTATG-TCCCGAAGGCATTTG
1 ATCCGGACTAAGAT-CCGAAGGCATTTG
15114645 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 57 0.35
40 103 0.63
41 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
Found at i:15114512 original size:79 final size:79
Alignment explanation
Indices: 15114423--15114644 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 79
15114413 TGACCATATC
* *
15114423 CGGACTAAGATCCGAAGGCATTT-TGCGAGATACTAAATCCGGACTAAGATCTGAAGGCATTTGT
1 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAG-CCCGAAGGCATTTGT
15114487 GCGAGATACTAAATT
65 GCGAGATACTAAATT
* *
15114502 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTG
1 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGCCCGAAGGCATTTGTG
*
15114567 CGAGTTACTAAA-T
66 CGAGATACTAAATT
* * * * * *
15114580 CCGAGTTAAG-TCCCGAAGGCAATTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 CGGA-CTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AATCCGGACTAAG-CCCGAAGGCATT
15114643 TG
62 TG
15114645 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
78 5 0.04
79 84 0.66
80 38 0.30
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (79 bp):
CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGCCCGAAGGCATTTGTG
CGAGATACTAAATT
Found at i:15114636 original size:119 final size:120
Alignment explanation
Indices: 15114381--15114644 Score: 294
Period size: 119 Copynumber: 2.2 Consensus size: 120
15114371 TTGAATGATG
* * *
15114381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
* *
15114445 TTGCGAGATACTAAATCCGGACTAAGATCTGAAGGCATTTGTGCGAGATACTAAA
66 TTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGATACTAAA
* * *
15114500 TTCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGAT-ACTAAT-TCCGGGCTAAG-CCCGAAGGC
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TGAC-AATATCCGGACTAAGACCCGAAGGC
* * *
15114560 ATTTGTGCGAGTTACTAAATCC-GAGTTAAG-TCCCGAAGGCAATTGTGCGAGTTACTATAA
63 ATTT-TGCGAGATACTAAATCCGGA-CTAAGAT-CCGAAGGCAATTGTGCGAGATACTA-AA
*
15114620 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15114645 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
118 16 0.13
119 93 0.76
120 13 0.11
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
TTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGATACTAAA
Found at i:15114651 original size:40 final size:39
Alignment explanation
Indices: 15114382--15114644 Score: 241
Period size: 40 Copynumber: 6.6 Consensus size: 39
15114372 TGAATGATGT
* * * *
15114382 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
15114422 CCGGACTAAGAT-CCGAAGGCATTT-TGCGAGATACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
15114460 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
15114500 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
15114541 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
15114579 TCCGAGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15114620 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
15114645 AACGAGTAGC
Statistics
Matches: 193, Mismatches: 21, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 61 0.32
40 125 0.65
41 6 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15114677 original size:79 final size:79
Alignment explanation
Indices: 15114434--15114669 Score: 207
Period size: 79 Copynumber: 3.0 Consensus size: 79
15114424 GGACTAAGAT
* * * * ** *
15114434 CCGAAGGC-ATTTTGCGAGATACTAA-ATCCGGACTAAGATCTGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCAATTGTGCGAGATACTAATA-CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTACT
* *
15114497 AAATTCG-GACTAAGAT-
64 AAATCCGAG-TTAA-ATC
* * **
15114513 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
15114578 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* *
15114592 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
15114655 TATATCCG-GTTAAAT
63 TAAATCCGAGTTAAAT
15114670 TCTGAAGGTA
Statistics
Matches: 132, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.02
79 78 0.59
80 51 0.39
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:15126472 original size:79 final size:82
Alignment explanation
Indices: 15126336--15126520 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
15126326 TTGAATGATG
* *
15126336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
15126400 TGTGCGAGATACTA-AT
66 TGTGCGAGATACTATAA
* * * **
15126416 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
15126478 TTGTGCGAGTTACTATAA
65 TTGTGCGAGATACTATAA
*
15126496 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15126521 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATAA
Found at i:15126527 original size:40 final size:40
Alignment explanation
Indices: 15126336--15126520 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
15126326 TTGAATGATG
* * * *
15126336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15126376 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
15126416 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
15126455 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15126496 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15126521 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15126542 original size:79 final size:79
Alignment explanation
Indices: 15126389--15126553 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
15126379 GGACTAAGAT
* * **
15126389 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
15126454 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
15126468 CCGAAGGCAATTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
15126531 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
15126547 CCGAAGG
1 CCGAAGG
15126554 TATGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 47 0.64
80 27 0.36
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:15129718 original size:43 final size:42
Alignment explanation
Indices: 15129661--15129898 Score: 196
Period size: 43 Copynumber: 5.6 Consensus size: 42
15129651 TAAATTCATT
*
15129661 GATACGGGGAATCAGCACATAGCAACCTCTTTCACAATTAAG
1 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATTAAG
** * * *
15129703 GATTTGGTGGAATCAGCACTTAGCAACCACCTTT-A-TATTCAG
1 GATACGG-GGAATCAGCACATAGCAACC-CCTTTCACAATTAAG
* * * *
15129745 TGATACGGGGAATCAGCACCTAGCAGCCCCATTCACAATTAAA
1 -GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATTAAG
* * * * *
15129788 AATACGGTGGATTCAGCACATAGCAACCACCATT-A-TATTCAAC
1 GATACGG-GGAATCAGCACATAGCAACC-CCTTTCACAATT-AAG
* *
15129831 GATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAA
1 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATTAAG
* * * *
15129873 AATACGGTGGGATCAACACTTAGCAA
1 GATACGG-GGAATCAGCACATAGCAA
15129899 TCACCTTTAT
Statistics
Matches: 156, Mismatches: 29, Indels: 21
0.76 0.14 0.10
Matches are distributed among these distances:
41 8 0.05
42 65 0.42
43 74 0.47
44 9 0.06
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (42 bp):
GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATTAAG
Found at i:15129769 original size:42 final size:41
Alignment explanation
Indices: 15129651--15129946 Score: 184
Period size: 43 Copynumber: 7.0 Consensus size: 41
15129641 GCAACCACCA
* *
15129651 TAAATTCATTGATACGGGGAATCAGCACATAGCAACCTCTT
1 TAAATTCAATGATACGGGGAATCAGCACATAGCAACCCCTT
* ** *
15129692 TCACAATT-AAGGATTTGGTGGAATCAGCACTTAGCAACCACCTT
1 T-A-AATTCAATGATACGG-GGAATCAGCACATAGCAACC-CCTT
* * * *
15129736 TATATTCAGTGATACGGGGAATCAGCACCTAGCAGCCCCATT
1 TAAATTCAATGATACGGGGAATCAGCACATAGCAACCCC-TT
* ** * *
15129778 CACAATT-AAAAATACGGTGGATTCAGCACATAGCAACCACCAT
1 TA-AATTCAATGATACGG-GGAATCAGCACATAGCAACC-CCTT
* * *
15129821 TATATTCAACGATACGGGGAATCAGCACTTAGCAACCCCTT
1 TAAATTCAATGATACGGGGAATCAGCACATAGCAACCCCTT
** * * * *
15129862 TCACAATT-AAAAATACGGTGGGATCAACACTTAGCAATCACCTT
1 T-A-AATTCAATGATACGG-GGAATCAGCACATAGCAA-CCCCTT
* * * ** * *
15129906 TATAGTCAATAATTTGGGGAATTAGCACTTAGCAACCCCTT
1 TAAATTCAATGATACGGGGAATCAGCACATAGCAACCCCTT
15129947 GGGGAATCAA
Statistics
Matches: 196, Mismatches: 44, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
41 12 0.06
42 85 0.43
43 87 0.44
44 12 0.06
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (41 bp):
TAAATTCAATGATACGGGGAATCAGCACATAGCAACCCCTT
Found at i:15129769 original size:85 final size:85
Alignment explanation
Indices: 15129623--15129946 Score: 398
Period size: 85 Copynumber: 3.8 Consensus size: 85
15129613 ATCCGTTACT
* * * * * *
15129623 CGGTGGATTCATCACTTAGCAACCACC-ATAAATTCATTGATACGGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACTTAGCAAC
* ** *
15129687 CTCTTTCACAATTAAGGATT
66 CCCTTTCACAATTAAAAATA
* * * *
15129707 TGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACCTAGCAGC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACTTAGCAAC
*
15129772 CCCATTCACAATTAAAAATA
66 CCCTTTCACAATTAAAAATA
* * * *
15129792 CGGTGGATTCAGCACATAGCAACCACCATTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACTTAGCAAC
15129857 CCCTTTCACAATTAAAAATA
66 CCCTTTCACAATTAAAAATA
* * * * * ** *
15129877 CGGTGGGATCAACACTTAGCAATCACCTTTATAGTCAATAATTTGGGGAATTAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACTTAGCAAC
15129942 CCCTT
66 CCCTT
15129947 GGGGAATCAA
Statistics
Matches: 205, Mismatches: 34, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
84 24 0.12
85 181 0.88
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACTTAGCAAC
CCCTTTCACAATTAAAAATA
Found at i:15129960 original size:26 final size:26
Alignment explanation
Indices: 15129919--15129969 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15129909 AGTCAATAAT
* *
15129919 TTGGGGAATTAGCACTTAGCAACCCC
1 TTGGGGAATCAACACTTAGCAACCCC
15129945 TTGGGGAATCAACACTTAGCAACCC
1 TTGGGGAATCAACACTTAGCAACCC
15129970 ATTTTTATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (26 bp):
TTGGGGAATCAACACTTAGCAACCCC
Found at i:15130341 original size:30 final size:30
Alignment explanation
Indices: 15130305--15130362 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
15130295 CGACTCAACT
15130305 TTTTGCAAAATTACAATTTTGTCCCAAAAC
1 TTTTGCAAAATTACAATTTTGTCCCAAAAC
* * *
15130335 TTTTGCATATTTACATTTTTGTCCCAAA
1 TTTTGCAAAATTACAATTTTGTCCCAAA
15130363 GCTCGAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGTCCCAAAAC
Done.