Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 51 of 185
Found at i:15537820 original size:12 final size:12
Alignment explanation
Indices: 15537803--15537835 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15537793 GCGAGTGCTT
15537803 GGCCGTGTG-GTA
1 GGCCGTGTGCG-A
15537815 GGCCGTGTGCGA
1 GGCCGTGTGCGA
15537827 GGCCGTGTG
1 GGCCGTGTG
15537836 TCACACATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.95
13 1 0.05
ACGTcount: A:0.06, C:0.21, G:0.52, T:0.21
Consensus pattern (12 bp):
GGCCGTGTGCGA
Found at i:15541015 original size:98 final size:98
Alignment explanation
Indices: 15540846--15541176 Score: 662
Period size: 98 Copynumber: 3.4 Consensus size: 98
15540836 TTCACCTCCG
15540846 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAAATGAATCTGATGTGAGTAATTCTTTTTG
1 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAAATGAATCTGATGTGAGTAATTCTTTTTG
15540911 TAGCCATTGTCCAACGCACATAACTTTCGACAC
66 TAGCCATTGTCCAACGCACATAACTTTCGACAC
15540944 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAAATGAATCTGATGTGAGTAATTCTTTTTG
1 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAAATGAATCTGATGTGAGTAATTCTTTTTG
15541009 TAGCCATTGTCCAACGCACATAACTTTCGACAC
66 TAGCCATTGTCCAACGCACATAACTTTCGACAC
15541042 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAAATGAATCTGATGTGAGTAATTCTTTTTG
1 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAAATGAATCTGATGTGAGTAATTCTTTTTG
15541107 TAGCCATTGTCCAACGCACATAACTTTCGACAC
66 TAGCCATTGTCCAACGCACATAACTTTCGACAC
15541140 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAA
1 AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAA
15541177 TCGATCTGGT
Statistics
Matches: 233, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 233 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (98 bp):
AATGAGGTTTGCAAGATACTTGAAGCTCGAGGGGGAAATGAATCTGATGTGAGTAATTCTTTTTG
TAGCCATTGTCCAACGCACATAACTTTCGACAC
Found at i:15544049 original size:61 final size:60
Alignment explanation
Indices: 15543873--15544050 Score: 175
Period size: 61 Copynumber: 3.0 Consensus size: 60
15543863 TTCTTTTTAC
15543873 ATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTGTATTAAATTATATATT
1 ATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATT-TATTAAATTATATATT
* * ** * * * * * *
15543934 TTTATTAAATTATATTTA-ATAATAATTATGTTAA-ATT-ATATTTTA-TAGTATTATATATT
1 ATGATTTTATTAAATTCATATAAGAA-TAT-TTAATATTAAGAATTTATTA-AATTATATATT
**
15543993 ATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAACTTTATTAAATTATAT
1 ATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA-TTTATTAAATTATAT
15544051 TTAATAATAA
Statistics
Matches: 87, Mismatches: 22, Indels: 16
0.70 0.18 0.13
Matches are distributed among these distances:
58 6 0.07
59 28 0.32
60 18 0.21
61 29 0.33
62 6 0.07
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (60 bp):
ATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTATTAAATTATATATT
Found at i:15544311 original size:16 final size:16
Alignment explanation
Indices: 15544292--15544352 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
15544282 TATTACGCTA
15544292 CTATTCCATTACACCT
1 CTATTCCATTACACCT
*
15544308 CTATTCCATTACGCCT
1 CTATTCCATTACACCT
* * *
15544324 TTATTTCATTACGCCT
1 CTATTCCATTACACCT
*
15544340 CTATTCCAATACA
1 CTATTCCATTACA
15544353 GCGAACCAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.25, C:0.33, G:0.03, T:0.39
Consensus pattern (16 bp):
CTATTCCATTACACCT
Found at i:15546341 original size:22 final size:21
Alignment explanation
Indices: 15546291--15546333 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15546281 ATAACGGGGG
*
15546291 TTAGTGAAAGGAACACCAAAA
1 TTAGTGAAAAGAACACCAAAA
15546312 TTAGTGAAAAGAACACCAAAA
1 TTAGTGAAAAGAACACCAAAA
15546333 T
1 T
15546334 AATATGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.16
Consensus pattern (21 bp):
TTAGTGAAAAGAACACCAAAA
Found at i:15554001 original size:13 final size:13
Alignment explanation
Indices: 15553983--15554014 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
15553973 AGGGAGAAGA
15553983 AGTTATAATCATG
1 AGTTATAATCATG
15553996 AGTTATAATCATG
1 AGTTATAATCATG
15554009 AGTTAT
1 AGTTAT
15554015 TTAAGTAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.41
Consensus pattern (13 bp):
AGTTATAATCATG
Found at i:15554041 original size:20 final size:20
Alignment explanation
Indices: 15554016--15554065 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
15554006 ATGAGTTATT
15554016 TAAGTAAGCAAGTAAGTAAA
1 TAAGTAAGCAAGTAAGTAAA
15554036 TAAGTAAG-AGAGTAAGTAAA
1 TAAGTAAGCA-AGTAAGTAAA
*
15554056 GAAG-AAGCAA
1 TAAGTAAGCAA
15554066 AGACCATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.56, C:0.04, G:0.24, T:0.16
Consensus pattern (20 bp):
TAAGTAAGCAAGTAAGTAAA
Found at i:15564586 original size:23 final size:23
Alignment explanation
Indices: 15564556--15564612 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
15564546 GCGATTTATC
*
15564556 GCATTTTTACTGTCAGCTTGTCT
1 GCATTTTTACTGGCAGCTTGTCT
* *
15564579 GCATTTTTACTGGCAGTTTGTTT
1 GCATTTTTACTGGCAGCTTGTCT
*
15564602 GAATTTTTACT
1 GCATTTTTACT
15564613 AGCATAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.16, C:0.16, G:0.18, T:0.51
Consensus pattern (23 bp):
GCATTTTTACTGGCAGCTTGTCT
Found at i:15578354 original size:49 final size:49
Alignment explanation
Indices: 15578281--15578384 Score: 154
Period size: 49 Copynumber: 2.1 Consensus size: 49
15578271 AGATAAAAAC
* * * * *
15578281 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACATTTTATA
1 AAATTAAAATTAAGTTCAACATCATGAATCAAAAGCTCAACACTTTATA
*
15578330 AAATTAAAATTAAGTTCAACATCATGAATCAAAAGCTCAACGCTTTATA
1 AAATTAAAATTAAGTTCAACATCATGAATCAAAAGCTCAACACTTTATA
15578379 AAATTA
1 AAATTA
15578385 TAACACATGA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAACATCATGAATCAAAAGCTCAACACTTTATA
Found at i:15581701 original size:44 final size:45
Alignment explanation
Indices: 15581653--15581769 Score: 127
Period size: 44 Copynumber: 2.6 Consensus size: 45
15581643 TCATGGTGAA
15581653 TAAATAAAAACAGGGAAAGTTTAACATAA-GTAGTCATTGATAAC
1 TAAATAAAAACAGGGAAAGTTTAACATAATGTAGTCATTGATAAC
** * *
15581697 TAAAT-TTAACA---TAAGTTTAACATACGTATTTAGTCATTGATAAC
1 TAAATAAAAACAGGGAAAGTTTAACATA---ATGTAGTCATTGATAAC
*
15581741 TAACTAAAAACAGGGAAAGTTTAACATAA
1 TAAATAAAAACAGGGAAAGTTTAACATAA
15581770 ATTTAACATA
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
40 12 0.21
43 5 0.09
44 23 0.40
45 5 0.09
48 12 0.21
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (45 bp):
TAAATAAAAACAGGGAAAGTTTAACATAATGTAGTCATTGATAAC
Found at i:15606847 original size:13 final size:14
Alignment explanation
Indices: 15606828--15606865 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
15606818 CAATGGCATA
15606828 GAAATAATATAAAT
1 GAAATAATATAAAT
15606842 -AAATAA-ATAAAT
1 GAAATAATATAAAT
15606854 GAAATTAATATA
1 GAAA-TAATATA
15606866 CAAAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (14 bp):
GAAATAATATAAAT
Found at i:15607479 original size:17 final size:17
Alignment explanation
Indices: 15607457--15607500 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
15607447 TAGGAAATAA
15607457 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
15607474 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
15607491 -ATATGTATAT
1 AAAATGTATAT
15607501 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:15607526 original size:33 final size:33
Alignment explanation
Indices: 15607429--15607527 Score: 79
Period size: 33 Copynumber: 3.2 Consensus size: 33
15607419 AAAAGTGTAT
* * *
15607429 ATATATGCATATAAAAGTTA-GGAAATA-AAAA
1 ATATATGTATATAAAAGTTATGCAAATAGAATA
* *
15607460 ATGTATATGTATAT-AAA---ATGTAAAT-GTAT-
1 A--TATATGTATATAAAAGTTATGCAAATAGAATA
15607489 ATATATGTATATAAAAGTTATGCAAATAGAATA
1 ATATATGTATATAAAAGTTATGCAAATAGAATA
15607522 ATATAT
1 ATATAT
15607528 ATAATATGCA
Statistics
Matches: 52, Mismatches: 6, Indels: 18
0.68 0.08 0.24
Matches are distributed among these distances:
27 11 0.21
28 3 0.06
29 2 0.04
30 6 0.12
31 8 0.15
32 6 0.12
33 16 0.31
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.34
Consensus pattern (33 bp):
ATATATGTATATAAAAGTTATGCAAATAGAATA
Found at i:15608025 original size:21 final size:19
Alignment explanation
Indices: 15607987--15608055 Score: 111
Period size: 19 Copynumber: 3.5 Consensus size: 19
15607977 AATCATATCT
15607987 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
*
15608006 TCTAAGATTGCATTTATCATA
1 TCTAAGATTG--TATATCATA
15608027 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
15608046 TCTAAGATTG
1 TCTAAGATTG
15608056 CACATCCTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 28 0.61
21 18 0.39
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (19 bp):
TCTAAGATTGTATATCATA
Found at i:15608558 original size:44 final size:44
Alignment explanation
Indices: 15608497--15608613 Score: 146
Period size: 44 Copynumber: 2.7 Consensus size: 44
15608487 ATTCTAATCC
* * *
15608497 ACTCCACTACAACTTTAGGGAGATAAGA-TTTGTTCATTCAGTCT
1 ACTCCACTGCAACTTTAGGGAGATAAGACTTTCTT-ACTCAGTCT
* * *
15608541 ACTTCACTGCAATTTTAGGGGGATAAGACTTTCTTACTCAGTCT
1 ACTCCACTGCAACTTTAGGGAGATAAGACTTTCTTACTCAGTCT
* *
15608585 GCTCCACTGCAACTTCAGGGAGATAAGAC
1 ACTCCACTGCAACTTTAGGGAGATAAGAC
15608614 CCGATGTGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 56 0.92
45 5 0.08
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
ACTCCACTGCAACTTTAGGGAGATAAGACTTTCTTACTCAGTCT
Found at i:15608640 original size:41 final size:43
Alignment explanation
Indices: 15608590--15608694 Score: 124
Period size: 44 Copynumber: 2.5 Consensus size: 43
15608580 AGTCTGCTCC
*
15608590 ACTGCAACTTCAGGGAGATAAGACCCG-A-TGTGATCTACTCT
1 ACTGCAACTTCAGGGAGATAAGACCCGTAGTGTAATCTACTCT
* * * * *
15608631 ACTGCAACTTCAGAGAGATAAGATCTGTAGTTTTAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGACCCGTAG-TGTAATCTACTCT
*
15608675 ACTGCAACTTTAGGGAGATA
1 ACTGCAACTTCAGGGAGATA
15608695 GGACTATTGG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 24 0.45
42 1 0.02
44 28 0.53
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (43 bp):
ACTGCAACTTCAGGGAGATAAGACCCGTAGTGTAATCTACTCT
Found at i:15608684 original size:44 final size:41
Alignment explanation
Indices: 15608582--15608694 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 41
15608572 TCTTACTCAG
* *
15608582 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCCGATGTGA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGACCCGATGTAA
* * * * *
15608623 TCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAGTTTTAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGACCCG-A--TGTAA
*
15608667 TCTGCTCTACTGCAACTTTAGGGAGATA
1 TCTGCTCTACTGCAACTTCAGGGAGATA
15608695 GGACTATTGG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 30 0.51
42 1 0.02
44 28 0.47
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (41 bp):
TCTGCTCTACTGCAACTTCAGGGAGATAAGACCCGATGTAA
Found at i:15608710 original size:44 final size:44
Alignment explanation
Indices: 15608582--15608725 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 44
15608572 TCTTACTCAG
* * * * * *
15608582 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCCG-A--TGTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAGCTTTAA
* *
15608623 TCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAGTTTTAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAGCTTTAA
* * * * *
15608667 TCTGCTCTACTGCAACTTTAGGGAGATAGGA-CTATTGGCTTTAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-GTAGCTTTAA
* *
15608711 TATGCTCCACTGCAA
1 TCTGCTCTACTGCAA
15608726 TGCCAAAGAG
Statistics
Matches: 83, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
41 30 0.36
42 1 0.01
43 2 0.02
44 50 0.60
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAGCTTTAA
Found at i:15609114 original size:88 final size:89
Alignment explanation
Indices: 15608905--15609229 Score: 315
Period size: 88 Copynumber: 3.7 Consensus size: 89
15608895 TCAAGGCAAT
* * * * * *
15608905 AAGACTGATATCTTCGATCTGCTTCACTGCCAGTATAGGAAGGCAAGATCTGCTGT--TTTAACC
1 AAGACTGGTGTCTTCAATCTGCTTCACTGCCAGTACAGGAAGGCAAGATCTGCTATCCTTCAACC
* ** **
15608968 TACTCCACTGCTGCT-CAGGGAGAT
66 TGCTCCACTG-TAATCCAGGGAGGC
* * * * * * * **
15608992 AAGGCAGGAGTTTTCGATCTGCTTCCCTGCCAGTATAGGAAGGCAAGATCTGCTATCCTT-AGTC
1 AAGACTGGTGTCTTCAATCTGCTTCACTGCCAGTACAGGAAGGCAAGATCTGCTATCCTTCAACC
15609056 TGCTCCACTGTAA-CCTAGGGAGGC
66 TGCTCCACTGTAATCC-AGGGAGGC
* *
15609080 AAGACTGGT-TCCTTCAATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTAT-TTTCAAC
1 AAGACTGGTGT-CTTCAATCTGCTTCACTGCCAGTACAGGAAGGCAAGATCTGCTATCCTTCAAC
*
15609143 CTGCTCCGCTGTAATCCAGGGAGGC
65 CTGCTCCACTGTAATCCAGGGAGGC
* ** * *
15609168 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTAT-CTTCAA
1 AAGACTGGTGTCTTCAATCTGCTTCACTGCCAGTACAGGAAGGCAAGATCTGCTATCCTTCAA
15609230 TGATCTGTTC
Statistics
Matches: 196, Mismatches: 34, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
87 53 0.27
88 138 0.70
89 5 0.03
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (89 bp):
AAGACTGGTGTCTTCAATCTGCTTCACTGCCAGTACAGGAAGGCAAGATCTGCTATCCTTCAACC
TGCTCCACTGTAATCCAGGGAGGC
Found at i:15609147 original size:45 final size:45
Alignment explanation
Indices: 15609002--15609230 Score: 134
Period size: 44 Copynumber: 5.2 Consensus size: 45
15608992 AAGGCAGGAG
* * * *
15609002 TTTTCGATCTGCTTCCCTGCCAGTATAGGAAGGCAAGATCTGCTA
1 TTTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTA
* * * * * *
15609047 TCCTT-AGTCTGCTCCACTGT-A--ACCTAGGGAGGCAAGA-CTGGT-
1 T-TTTCAATCTGCTTCGCTGTCAGTA-C-AGGAAGGCAAGATCTGCTA
* *
15609089 TCCTTCAATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTA
1 T-TTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTA
* * * * * * * *
15609135 TTTTCAACCTGCTCCGCTGT-AATCCAGGGAGGCAAG-GCTGGTG
1 TTTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTA
* * *
15609178 TCTTT-GATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTA
1 T-TTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTA
*
15609223 TCTTCAAT
1 TTTTCAAT
15609231 GATCTGTTCT
Statistics
Matches: 135, Mismatches: 36, Indels: 26
0.69 0.18 0.13
Matches are distributed among these distances:
42 6 0.04
43 33 0.24
44 54 0.40
45 38 0.28
46 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (45 bp):
TTTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTA
Found at i:15615061 original size:13 final size:14
Alignment explanation
Indices: 15615042--15615079 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
15615032 CAATGGCATA
15615042 GAAATAATATAAAT
1 GAAATAATATAAAT
15615056 -AAATAA-ATAAAT
1 GAAATAATATAAAT
15615068 GAAATTAATATA
1 GAAA-TAATATA
15615080 CAAAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (14 bp):
GAAATAATATAAAT
Found at i:15615319 original size:17 final size:17
Alignment explanation
Indices: 15615297--15615340 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
15615287 TAGGAAATAA
15615297 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
15615314 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
15615331 -ATATGTATAT
1 AAAATGTATAT
15615341 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:15615476 original size:3 final size:3
Alignment explanation
Indices: 15615468--15615509 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
15615458 ATATATATAG
*
15615468 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15615510 CTTAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:15615546 original size:20 final size:21
Alignment explanation
Indices: 15615502--15615550 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
15615492 TAATAATAAC
*
15615502 AATAATAACTTAATAAAAAGAA
1 AATAA-AATTTAATAAAAAGAA
*
15615524 AATAAAATTTAATAAAAA-TA
1 AATAAAATTTAATAAAAAGAA
15615544 AATAAAA
1 AATAAAA
15615551 AACCAAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.32
21 12 0.48
22 5 0.20
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (21 bp):
AATAAAATTTAATAAAAAGAA
Found at i:15615875 original size:21 final size:20
Alignment explanation
Indices: 15615839--15615908 Score: 117
Period size: 19 Copynumber: 3.5 Consensus size: 20
15615829 AATCATATCT
15615839 TCTAAGATTG-TATATCATA
1 TCTAAGATTGCTATATCATA
15615858 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC-TATATCATA
15615879 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCTATATCATA
15615898 TCTAAGATTGC
1 TCTAAGATTGC
15615909 ACATCCTTGA
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
19 29 0.59
21 20 0.41
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (20 bp):
TCTAAGATTGCTATATCATA
Found at i:15625548 original size:18 final size:18
Alignment explanation
Indices: 15625520--15625564 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
15625510 CGTTCGTTTC
*
15625520 CAAAACATTATTC-ATTT
1 CAAAACGTTATTCAATTT
*
15625537 ACAAATCGTTATTCAATTT
1 -CAAAACGTTATTCAATTT
15625556 CAAAACGTT
1 CAAAACGTT
15625565 TTCTTATTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAAAACGTTATTCAATTT
Found at i:15628807 original size:32 final size:33
Alignment explanation
Indices: 15628766--15628841 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 33
15628756 GCCCACACGA
* *
15628766 CCCAAAATGGC-TTGCTTGTGTGGGT-CACATGG
1 CCCAAAATGGCATTGCCTATGT-GGTCCACATGG
15628798 CCCAAAATGGCATTGCCTATGTGGTCCACATGG
1 CCCAAAATGGCATTGCCTATGTGGTCCACATGG
15628831 CCCAAAATGGC
1 CCCAAAATGGC
15628842 CTAAACCGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
32 14 0.35
33 26 0.65
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (33 bp):
CCCAAAATGGCATTGCCTATGTGGTCCACATGG
Found at i:15635163 original size:27 final size:27
Alignment explanation
Indices: 15635119--15635170 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
15635109 ATGAGCGTGC
15635119 TCGAAATACCCTCAAAGGGTAAAATTA
1 TCGAAATACCCTCAAAGGGTAAAATTA
* *
15635146 TCGAAATACTCTCGAAGGGTAAAAT
1 TCGAAATACCCTCAAAGGGTAAAAT
15635171 AACCAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (27 bp):
TCGAAATACCCTCAAAGGGTAAAATTA
Found at i:15635189 original size:27 final size:27
Alignment explanation
Indices: 15635122--15635183 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
15635112 AGCGTGCTCG
* * * *
15635122 AAATACCCTCAAAGGGTAAAATTATCG
1 AAATACCCTCGAAGGGTAAAATAACCA
*
15635149 AAATACTCTCGAAGGGTAAAATAACCA
1 AAATACCCTCGAAGGGTAAAATAACCA
15635176 AAATACCC
1 AAATACCC
15635184 ATGAAGAGGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.47, C:0.21, G:0.13, T:0.19
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATAACCA
Found at i:15640817 original size:36 final size:36
Alignment explanation
Indices: 15640770--15640840 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
15640760 AGTTTGGGGG
15640770 TGTGATAATACTAGAAAGAACATATGTTTTATCCCC
1 TGTGATAATACTAGAAAGAACATATGTTTTATCCCC
*
15640806 TGTGATAATACTAGAAAGAACATATGTTTTCTCCC
1 TGTGATAATACTAGAAAGAACATATGTTTTATCCC
15640841 TACTTATTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (36 bp):
TGTGATAATACTAGAAAGAACATATGTTTTATCCCC
Found at i:15647292 original size:44 final size:44
Alignment explanation
Indices: 15647242--15647352 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 44
15647232 ATCTGCTCTT
* * * *
15647242 TGCAACTTCAGAGAGATAAGATCT-GTGGTTTTAATCCGCTCTAC
1 TGCAACTTCAGGGAGATAAGAT-TAGTGGCTTTAATACGCTCCAC
* * *
15647286 TGCAACTTCAGGGAGATAGGATTATTGGCTTTAATATGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTAGTGGCTTTAATACGCTCCAC
*
15647330 TGCAACTTCAGGGAAATAAGATT
1 TGCAACTTCAGGGAGATAAGATT
15647353 TTCCATATTC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.02
44 56 0.98
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTAGTGGCTTTAATACGCTCCAC
Found at i:15647615 original size:51 final size:51
Alignment explanation
Indices: 15647546--15647645 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
15647536 TTCAAGTCCT
* * * *
15647546 AACGCTAGTGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCACTGC
1 AACGCTAGGGAAACAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTGC
* * *
15647597 AACGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACT
1 AACGCTAGGGAAACAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACT
15647646 ATAATGCGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (51 bp):
AACGCTAGGGAAACAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTGC
Found at i:15647913 original size:44 final size:45
Alignment explanation
Indices: 15647789--15647922 Score: 119
Period size: 43 Copynumber: 3.0 Consensus size: 45
15647779 AAGACTAATT
** * *
15647789 TCTTCGATCTACTTCACTACCAGCACAGGAAGGCAAGATCTGCTA
1 TCTTCGATCTACTTCACTACCAATACAGGAAGACAAGAGCTGCTA
* * * * * *** * *
15647834 TTTTCAACCTACTCCACTGCTGCT-CAGGGAGACAAG-GCTGGTA
1 TCTTCGATCTACTTCACTACCAATACAGGAAGACAAGAGCTGCTA
*
15647877 TCTTCGATCTACTTCACTACCAATACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACTACCAATACAGGAAGACAAGAGCTGCTA
15647922 T
1 T
15647923 TTTCAACCTA
Statistics
Matches: 63, Mismatches: 24, Indels: 4
0.69 0.26 0.04
Matches are distributed among these distances:
43 21 0.33
44 21 0.33
45 21 0.33
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (45 bp):
TCTTCGATCTACTTCACTACCAATACAGGAAGACAAGAGCTGCTA
Found at i:15647938 original size:88 final size:88
Alignment explanation
Indices: 15647789--15647961 Score: 292
Period size: 88 Copynumber: 2.0 Consensus size: 88
15647779 AAGACTAATT
* *
15647789 TCTTCGATCTACTTCACTACCAGCACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCACTACCAACACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
* *
15647854 TGCTCAGGGAGACAAGGCTGGTA
66 TACTCAGGAAGACAAGGCTGGTA
*
15647877 TCTTCGATCTACTTCACTACCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCACTACCAACACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
*
15647942 TACTCAGGAAGATAAGGCTG
66 TACTCAGGAAGACAAGGCTG
15647962 AAATATCACC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 79 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (88 bp):
TCTTCGATCTACTTCACTACCAACACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
TACTCAGGAAGACAAGGCTGGTA
Found at i:15647950 original size:44 final size:44
Alignment explanation
Indices: 15647814--15647953 Score: 156
Period size: 44 Copynumber: 3.2 Consensus size: 44
15647804 ACTACCAGCA
* *
15647814 CAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGCTGCT
1 CAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTACT
* * * * * * * * * *
15647858 CAGGGAGACAAG-GCTGGTATCTTCGATCTACTTCACTACCAAT
1 CAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTACT
15647901 ACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTACT
1 -CAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTACT
15647946 CAGGAAGA
1 CAGGAAGA
15647954 TAAGGCTGAA
Statistics
Matches: 72, Mismatches: 22, Indels: 4
0.73 0.22 0.04
Matches are distributed among these distances:
43 21 0.29
44 29 0.40
45 22 0.31
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (44 bp):
CAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTACT
Found at i:15667729 original size:58 final size:58
Alignment explanation
Indices: 15667659--15667776 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
15667649 CTAGAATTTC
15667659 AAGAGAAACACTAAAAACACCATCAATTTTACCATCTCTCTAATTTGTGGGTTTTCCA
1 AAGAGAAACACTAAAAACACCATCAATTTTACCATCTCTCTAATTTGTGGGTTTTCCA
*
15667717 AAGAGAAACACTAAAAACACCATCAATTTTATCATCTCTCTAATTTGTGGGTTTTCCA
1 AAGAGAAACACTAAAAACACCATCAATTTTACCATCTCTCTAATTTGTGGGTTTTCCA
15667775 AA
1 AA
15667777 TTTTCTACGA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (58 bp):
AAGAGAAACACTAAAAACACCATCAATTTTACCATCTCTCTAATTTGTGGGTTTTCCA
Found at i:15683507 original size:40 final size:39
Alignment explanation
Indices: 15683478--15683680 Score: 271
Period size: 40 Copynumber: 5.1 Consensus size: 39
15683468 ATAAGTGTAT
*
15683478 TCAGGTGTACCGAAGTACAAACAGTGGCACGTATGTGCAA
1 TCAGGGGTACCGAAGTACAAACAG-GGCACGTATGTGCAA
* * *
15683518 TCAGGAGTACCGAAGTACAAATAGGCGAACGTATGTGCAA
1 TCAGGGGTACCGAAGTACAAACAGG-GCACGTATGTGCAA
* *
15683558 TCAGGGGTACCAAAGTATAAACAAGGGCACGTATGTGCAA
1 TCAGGGGTACCGAAGTACAAAC-AGGGCACGTATGTGCAA
*
15683598 TCAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAA
1 TCAGGGGTACCGAAGTACAAACA-GGGCACGTATGTGCAA
* * *
15683638 CCAGGGGTACCGAAATATAAACAAGGGCACGTATGTGCAA
1 TCAGGGGTACCGAAGTACAAAC-AGGGCACGTATGTGCAA
15683678 TCA
1 TCA
15683681 CCAATAATTA
Statistics
Matches: 143, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
39 2 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (39 bp):
TCAGGGGTACCGAAGTACAAACAGGGCACGTATGTGCAA
Found at i:15683624 original size:20 final size:20
Alignment explanation
Indices: 15683479--15683624 Score: 64
Period size: 20 Copynumber: 7.3 Consensus size: 20
15683469 TAAGTGTATT
*
15683479 CAGGTGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * * *
15683499 CAGTGGCA-CGTATGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
*
15683519 CAGGAGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * * * *
15683539 TAGGCG-AACGTATGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
* *
15683559 CAGGGGTACCAAAGTATAAA
1 CAGGGGTACCGAAGTACAAA
* * * * *
15683579 CAAGGGCA-CGTATGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
15683599 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
15683619 CAGGGG
1 CAGGGG
15683625 CACATATGTG
Statistics
Matches: 82, Mismatches: 38, Indels: 12
0.62 0.29 0.09
Matches are distributed among these distances:
19 6 0.07
20 70 0.85
21 6 0.07
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.16
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:15683642 original size:20 final size:20
Alignment explanation
Indices: 15683576--15683644 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 20
15683566 ACCAAAGTAT
* *
15683576 AAACAAGGGCACGTATGTGC
1 AAACAGGGGCACATATGTGC
* * ** * *
15683596 AATCAGGGGTACCGAAGTAC
1 AAACAGGGGCACATATGTGC
15683616 AAACAGGGGCACATATGTGC
1 AAACAGGGGCACATATGTGC
*
15683636 AACCAGGGG
1 AAACAGGGG
15683645 TACCGAAATA
Statistics
Matches: 35, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.35, C:0.20, G:0.32, T:0.13
Consensus pattern (20 bp):
AAACAGGGGCACATATGTGC
Found at i:15683700 original size:80 final size:80
Alignment explanation
Indices: 15683460--15683687 Score: 235
Period size: 80 Copynumber: 2.9 Consensus size: 80
15683450 GGGTATAAAT
* * ** * * * **
15683460 AGGGGCACATAAGTGTATTCAGGTGTACCGAAGTACAAAC-AGTGGCACGTATGTGCAATCAGGA
1 AGGGGCACATATGTGCAACCAGGGGTACCAAAGTATAAACAAG-GGCACGTATGTGCAATCACCA
* * *
15683524 GTACCGAAGTACAAAT
65 ATAACGAAGTACAAAC
* * * * ****
15683540 AGGCGAACGTATGTGCAATCAGGGGTACCAAAGTATAAACAAGGGCACGTATGTGCAATCAGGGG
1 AGGGGCACATATGTGCAACCAGGGGTACCAAAGTATAAACAAGGGCACGTATGTGCAATCACCAA
*
15683605 TACCGAAGTACAAAC
66 TAACGAAGTACAAAC
15683620 AGGGGCACATATGTGCAACCAGGGGTACCGAAA-TATAAACAAGGGCACGTATGTGCAATCACCA
1 AGGGGCACATATGTGCAACCAGGGGTACC-AAAGTATAAACAAGGGCACGTATGTGCAATCACCA
15683684 ATAA
65 ATAA
15683688 TTATTTACAA
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 121 0.96
81 5 0.04
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (80 bp):
AGGGGCACATATGTGCAACCAGGGGTACCAAAGTATAAACAAGGGCACGTATGTGCAATCACCAA
TAACGAAGTACAAAC
Found at i:15688816 original size:20 final size:21
Alignment explanation
Indices: 15688782--15688820 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
15688772 TGGACCTGGT
15688782 ATTTTATTTTAGAATGTTTTTA
1 ATTTTATTTTAGAAT-TTTTTA
15688804 ATTTT-TTTT-GAATTTTT
1 ATTTTATTTTAGAATTTTT
15688821 AAGTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 4 0.24
22 5 0.29
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (21 bp):
ATTTTATTTTAGAATTTTTTA
Found at i:15691594 original size:62 final size:62
Alignment explanation
Indices: 15691512--15691631 Score: 240
Period size: 62 Copynumber: 1.9 Consensus size: 62
15691502 GTTATAACTC
15691512 AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAATGTT
1 AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAATGTT
15691574 AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAA
1 AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAA
15691632 CCTTAACTAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.38
Consensus pattern (62 bp):
AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAATGTT
Found at i:15694279 original size:59 final size:59
Alignment explanation
Indices: 15694151--15694412 Score: 436
Period size: 59 Copynumber: 4.4 Consensus size: 59
15694141 CACAGTCAAT
* *
15694151 AATATATTTGTACAAAAATATTCAAAAGAGCTTCTATTTTATTAAATGAAACAATA-TAA
1 AATA-ATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATAAAACAATATTAA
* *
15694210 AATAATTTGTACAAAAAAATTCAAAAGAACTTCTATTTTATTAAATAAAATAATATTAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATAAAACAATATTAA
*
15694269 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATAAAATAATATTAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATAAAACAATATTAA
* *
15694328 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATAAAACAATATTAA
*
15694387 AACAATTTGTACAAAAATATTCAAAA
1 AATAATTTGTACAAAAATATTCAAAA
15694413 ATAAATCAAT
Statistics
Matches: 193, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
58 47 0.24
59 146 0.76
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.35
Consensus pattern (59 bp):
AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATAAAACAATATTAA
Found at i:15696365 original size:11 final size:11
Alignment explanation
Indices: 15696351--15696376 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15696341 TAATTAAATT
15696351 ATAAAAATGAA
1 ATAAAAATGAA
15696362 ATAAAAATGAA
1 ATAAAAATGAA
15696373 ATAA
1 ATAA
15696377 TATTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (11 bp):
ATAAAAATGAA
Found at i:15696369 original size:20 final size:20
Alignment explanation
Indices: 15696324--15696369 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
15696314 AGCTATTATA
15696324 AAAAATTATAAAAATATTAAT
1 AAAAATTATAAAAATA-TAAT
*
15696345 -TAAATTATAAAAATGA-AAT
1 AAAAATTATAAAAAT-ATAAT
15696364 AAAAAT
1 AAAAAT
15696370 GAAATAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
19 3 0.14
20 17 0.81
21 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAATTATAAAAATATAAT
Found at i:15697817 original size:26 final size:25
Alignment explanation
Indices: 15697788--15697836 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
15697778 AAATTATTTT
15697788 TATTTAATTCTAATATAAAATATTAA
1 TATTTAATTCTAATA-AAAATATTAA
* * *
15697814 TATTTTATTTTATTAAAAATATT
1 TATTTAATTCTAATAAAAATATT
15697837 TTTGAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTTAATTCTAATAAAAATATTAA
Found at i:15702657 original size:14 final size:15
Alignment explanation
Indices: 15702638--15702670 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15702628 GAATTTTCCC
*
15702638 TTTTTTCTTTCT-CT
1 TTTTTTATTTCTCCT
15702652 TTTTTTATTTCTCCT
1 TTTTTTATTTCTCCT
15702667 TTTT
1 TTTT
15702671 CACTCAGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTATTTCTCCT
Found at i:15703227 original size:6 final size:6
Alignment explanation
Indices: 15703216--15703242 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15703206 GAAAAATATT
15703216 TGTGGA TGTGGA TGTGGA TGTGGA TGT
1 TGTGGA TGTGGA TGTGGA TGTGGA TGT
15703243 AATTATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.37
Consensus pattern (6 bp):
TGTGGA
Found at i:15704382 original size:29 final size:27
Alignment explanation
Indices: 15704328--15704387 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
15704318 AAAGCCCCTT
15704328 TTTTTTAATAATTACAGAAATAGGCCA
1 TTTTTTAATAATTACAGAAATAGGCCA
* * * *
15704355 GTTTTTTAATTATTTACCGGAATGGGCCA
1 -TTTTTTAA-TAATTACAGAAATAGGCCA
15704384 TTTT
1 TTTT
15704388 CCGCGAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (27 bp):
TTTTTTAATAATTACAGAAATAGGCCA
Found at i:15704899 original size:127 final size:127
Alignment explanation
Indices: 15704655--15705292 Score: 1050
Period size: 127 Copynumber: 5.1 Consensus size: 127
15704645 AAATAGTGGG
** * * * * * *
15704655 AAATCGCTTCTACTAGGATGCTAT-TTGAGAAGAAATTGTGAAATCGTGGCCTCGTGGACGCGAT
1 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
* ** * **
15704719 TTCGCTAC-AGTGGTCATGTAAGAAATAATTTTTTTTTGATGTTTTCTGAGCAAATAGTATA
66 TTCGCTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
15704780 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
1 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
*
15704845 TTCGTTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
66 TTCGCTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
15704907 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
1 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
15704972 TTCGCTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
66 TTCGCTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
*
15705034 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAC
1 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
*
15705099 TTCGCTACAGTTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
66 TTCGCTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
*
15705161 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAC
1 AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
* * * *
15705226 TTCGCTACAGTTGGTCATGTTGGAAATAATT-TTTTTTTACA-TTTCTGAGCAAATAGTGTC
66 TTCGCTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
15705286 AAATCGC
1 AAATCGC
15705293 GCCCTCGTGG
Statistics
Matches: 490, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
125 45 0.09
126 51 0.10
127 394 0.80
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (127 bp):
AAATCGCTGATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGACGCGAT
TTCGCTACAATTGGTCATGTTGGAAATAATTATTTTTTGACATTTTCTGAGCAAATAGTATA
Found at i:15708513 original size:7 final size:7
Alignment explanation
Indices: 15708497--15708554 Score: 73
Period size: 7 Copynumber: 8.4 Consensus size: 7
15708487 CTGTTGTATG
15708497 TTAGGG-
1 TTAGGGT
15708503 TTAGGGT
1 TTAGGGT
15708510 TTAGGGT
1 TTAGGGT
15708517 TTAGGGT
1 TTAGGGT
*
15708524 TAAGGGT
1 TTAGGGT
*
15708531 TAAGGGT
1 TTAGGGT
*
15708538 TAAGGGT
1 TTAGGGT
*
15708545 TAAGGGT
1 TTAGGGT
15708552 TTA
1 TTA
15708555 TAATTAAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
6 6 0.12
7 43 0.88
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.36
Consensus pattern (7 bp):
TTAGGGT
Found at i:15708522 original size:14 final size:14
Alignment explanation
Indices: 15708497--15708554 Score: 82
Period size: 14 Copynumber: 4.2 Consensus size: 14
15708487 CTGTTGTATG
15708497 TTAGGGTT-AGGGT
1 TTAGGGTTAAGGGT
*
15708510 TTAGGGTTTAGGGT
1 TTAGGGTTAAGGGT
*
15708524 TAAGGGTTAAGGGT
1 TTAGGGTTAAGGGT
*
15708538 TAAGGGTTAAGGGT
1 TTAGGGTTAAGGGT
15708552 TTA
1 TTA
15708555 TAATTAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
13 8 0.20
14 33 0.80
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.36
Consensus pattern (14 bp):
TTAGGGTTAAGGGT
Found at i:15708531 original size:21 final size:21
Alignment explanation
Indices: 15708497--15708554 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
15708487 CTGTTGTATG
15708497 TTAGGGTT-AGGGTTTAGGGT
1 TTAGGGTTAAGGGTTTAGGGT
*
15708517 TTAGGGTTAAGGGTTAAGGGT
1 TTAGGGTTAAGGGTTTAGGGT
*
15708538 TAAGGGTTAAGGGTTTA
1 TTAGGGTTAAGGGTTTA
15708555 TAATTAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 8 0.24
21 26 0.76
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.36
Consensus pattern (21 bp):
TTAGGGTTAAGGGTTTAGGGT
Found at i:15708561 original size:21 final size:21
Alignment explanation
Indices: 15708519--15708561 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
15708509 TTTAGGGTTT
**
15708519 AGGGTTAAGGGTTAAGGGTTA
1 AGGGTTAAGGGTTAAGAATTA
* *
15708540 AGGGTTAAGGGTTTATAATTA
1 AGGGTTAAGGGTTAAGAATTA
15708561 A
1 A
15708562 ATTAAGTTAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.35, T:0.33
Consensus pattern (21 bp):
AGGGTTAAGGGTTAAGAATTA
Found at i:15708586 original size:29 final size:29
Alignment explanation
Indices: 15708540--15709307 Score: 827
Period size: 28 Copynumber: 27.2 Consensus size: 29
15708530 TTAAGGGTTA
*
15708540 AGGGTTAAGGGTTTATAATTAAATTAAGTT
1 AGGGTT-AGGGTTTTTAATTAAATTAAGTT
** *
15708570 AGGGTTAGGGTTCATAATTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* * ** *
15708599 AGGGTTTAGGGTTTATAGTTGTATTAGGTT
1 AGGG-TTAGGGTTTTTAATTAAATTAAGTT
* * * ** *
15708629 AGGGTTTAGGATTTATAGTTGTATTAGGTT
1 AGGG-TTAGGGTTTTTAATTAAATTAAGTT
**
15708659 AGGGTTAGGGTTTTTAATTAAATTGGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
*
15708688 AGGGTTTAAGGTTTTTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTTTAATTAAATTAAGTT
* *
15708718 AAGGTTTAGGGTTTATAATTAAATTAAGTT
1 -AGGGTTAGGGTTTTTAATTAAATTAAGTT
15708748 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
*
15708777 AGGGTTAGGGTTTATAATTAAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
*
15708806 AGGGTTAGGG-TTTTAATTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
15708834 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
*
15708863 AGGGTTTAGGGTTTATAATTAAATTAAGTT
1 AGGG-TTAGGGTTTTTAATTAAATTAAGTT
* *
15708893 AGGGTTAGGGTTTATAATTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
15708922 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* * *
15708951 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* *
15708979 A-GGTTAGGGTTTTCAATTCAATT-A---
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
15709003 A--GTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* * *
15709030 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* * * *
15709058 AGGTTTTAGGGTTTATAATTACATTAAGAT
1 AGG-GTTAGGGTTTTTAATTAAATTAAGTT
* *
15709088 A-GGTTAGGGTTTTTAATTCAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* *
15709116 A-GGTTAGGGTTTTCAATTCAATT-A---
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
15709140 A--GTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* * *
15709167 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* *
15709195 A-GGTTAGGGTTTTCAATTCAATT-A---
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
15709219 A--GTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
* * *
15709246 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
*
15709274 A-GGTTAGGGTTTTTAATTCAATTAAGTT
1 AGGGTTAGGGTTTTTAATTAAATTAAGTT
15709302 AGGGTT
1 AGGGTT
15709308 TTTAATTAAA
Statistics
Matches: 645, Mismatches: 70, Indels: 47
0.85 0.09 0.06
Matches are distributed among these distances:
23 57 0.09
24 6 0.01
27 3 0.00
28 231 0.36
29 192 0.30
30 153 0.24
31 3 0.00
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.44
Consensus pattern (29 bp):
AGGGTTAGGGTTTTTAATTAAATTAAGTT
Found at i:15708834 original size:28 final size:28
Alignment explanation
Indices: 15708540--15709307 Score: 792
Period size: 29 Copynumber: 27.2 Consensus size: 28
15708530 TTAAGGGTTA
15708540 AGGGTTAAGGGTTTATAATTAAATTAAGTT
1 AGGGTT-AGGGTTT-TAATTAAATTAAGTT
* *
15708570 AGGGTTAGGGTTCATAATTAAATTAGGTT
1 AGGGTTAGGGTT-TTAATTAAATTAAGTT
* ** *
15708599 AGGGTTTAGGGTTTATAGTTGTATTAGGTT
1 AGGG-TTAGGGTTT-TAATTAAATTAAGTT
* * ** *
15708629 AGGGTTTAGGATTTATAGTTGTATTAGGTT
1 AGGG-TTAGGGTTT-TAATTAAATTAAGTT
**
15708659 AGGGTTAGGGTTTTTAATTAAATTGGGTT
1 AGGGTTAGGG-TTTTAATTAAATTAAGTT
*
15708688 AGGGTTTAAGGTTTTTAATTAAATTAAGTT
1 AGGG-TT-AGGGTTTTAATTAAATTAAGTT
*
15708718 AAGGTTTAGGGTTTATAATTAAATTAAGTT
1 -AGGGTTAGGGTTT-TAATTAAATTAAGTT
15708748 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGG-TTTTAATTAAATTAAGTT
15708777 AGGGTTAGGGTTTATAATTAAATTAAGTT
1 AGGGTTAGGGTTT-TAATTAAATTAAGTT
*
15708806 AGGGTTAGGGTTTTAATTAAATTAGGTT
1 AGGGTTAGGGTTTTAATTAAATTAAGTT
15708834 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGG-TTTTAATTAAATTAAGTT
15708863 AGGGTTTAGGGTTTATAATTAAATTAAGTT
1 AGGG-TTAGGGTTT-TAATTAAATTAAGTT
*
15708893 AGGGTTAGGGTTTATAATTAAATTAGGTT
1 AGGGTTAGGGTTT-TAATTAAATTAAGTT
15708922 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGG-TTTTAATTAAATTAAGTT
* *
15708951 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTA-GGGTTTTAATTAAATTAAGTT
*
15708979 A-GGTTAGGGTTTTCAATTCAATTAAGTT
1 AGGGTTAGGGTTTT-AATTAAATTAAGTT
15709007 AGGG-T----TTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTAATTAAATTAAGTT
* *
15709030 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTA-GGGTTTTAATTAAATTAAGTT
* * *
15709058 AGGTTTTAGGGTTTATAATTACATTAAGAT
1 AGG-GTTAGGGTTT-TAATTAAATTAAGTT
* *
15709088 A-GGTTAGGGTTTTTAATTCAATTAGGTT
1 AGGGTTAGGG-TTTTAATTAAATTAAGTT
*
15709116 A-GGTTAGGGTTTTCAATTCAATTAAGTT
1 AGGGTTAGGGTTTT-AATTAAATTAAGTT
15709144 AGGG-T----TTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTAATTAAATTAAGTT
* *
15709167 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTA-GGGTTTTAATTAAATTAAGTT
*
15709195 A-GGTTAGGGTTTTCAATTCAATTAAGTT
1 AGGGTTAGGGTTTT-AATTAAATTAAGTT
15709223 AGGG-T----TTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTTAATTAAATTAAGTT
* *
15709246 A-GGTTAGGGGTTTTAATTCAATTAGGTT
1 AGGGTTA-GGGTTTTAATTAAATTAAGTT
*
15709274 A-GGTTAGGGTTTTTAATTCAATTAAGTT
1 AGGGTTAGGG-TTTTAATTAAATTAAGTT
15709302 AGGGTT
1 AGGGTT
15709308 TTTAATTAAA
Statistics
Matches: 646, Mismatches: 47, Indels: 91
0.82 0.06 0.12
Matches are distributed among these distances:
22 6 0.01
23 45 0.07
24 12 0.02
27 21 0.03
28 204 0.32
29 209 0.32
30 143 0.22
31 6 0.01
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.44
Consensus pattern (28 bp):
AGGGTTAGGGTTTTAATTAAATTAAGTT
Found at i:15708952 original size:23 final size:23
Alignment explanation
Indices: 15708925--15709032 Score: 90
Period size: 23 Copynumber: 4.3 Consensus size: 23
15708915 TTAGGTTAGG
15708925 GTTAGGGTTTTTAATTAAATTAAGTTA
1 GTTAGGGTTTTTAATTAAATT-A---A
* *
15708952 GGTTAGGGGTTTTAATTCAATTAGGTTAG
1 -GTTAGGGTTTTTAATT-AA--A--TTAA
* *
15708981 GTTAGGGTTTTCAATTCAATTAA
1 GTTAGGGTTTTTAATTAAATTAA
15709004 GTTAGGGTTTTTAATTAAATTAA
1 GTTAGGGTTTTTAATTAAATTAA
15709027 GTTAGG
1 GTTAGG
15709033 TTAGGGGTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
23 30 0.45
25 1 0.01
27 1 0.01
28 29 0.43
29 2 0.03
31 1 0.01
32 1 0.01
33 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.44
Consensus pattern (23 bp):
GTTAGGGTTTTTAATTAAATTAA
Found at i:15709028 original size:79 final size:80
Alignment explanation
Indices: 15708542--15709304 Score: 675
Period size: 79 Copynumber: 9.0 Consensus size: 80
15708532 AAGGGTTAAG
** *
15708542 GGTTAAGGGTTTATAATTAAATTAAGTTAGGGTTAGGGTTCATAATTAAATTAGGTTAGGGTTTA
1 GGTT-AGGGTTT-TAATTAAATTAA--TA-GGTTAGGGTTTTTAATTAAATTAAGTTA-GG-TTA
* ** *
15708607 GGGTTTATAGTTGTATTAGGTTA
59 GGGTTT-TAATTCAATTAAGTTA
* * ** * **
15708630 GGGTTTAGGATTTATAGTTGTATTAGGTTAGGGTTAGGGTTTTTAATTAAATTGGGTTAGGGTTT
1 -GG-TTAGGGTTT-TAATTAAATTA--ATA-GGTTAGGGTTTTTAATTAAATTAAGTTA-GG-TT
* *
15708695 AAGGTTTTTAATTAAATTAAGTTAA
58 -AGGGTTTTAATTCAATTAAGTT-A
15708720 GGTTTAGGGTTTATAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAG
1 GG-TTAGGGTTT-TAATTAAATTAA--TA-GGTTAGGGTTTTTAATTAAATTAAGTTA-GGTTAG
*
15708785 GGTTTATAATTAAATTAAGTTA
60 GGTTT-TAATTCAATTAAGTTA
*
15708807 GGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTTAG
1 -GGTTAGGGTTTTAATTAAATTA--ATA-GGTTAGGGTTTTTAATTAAATTAAGTTA-GG-TTAG
*
15708872 GGTTTATAATTAAATTAAGTTA
60 GGTTT-TAATTCAATTAAGTTA
*
15708894 GGGTTAGGGTTTATAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGG
1 -GGTTAGGGTTT-TAATTAAATTA--ATA-GGTTAGGGTTTTTAATTAAATTAAGTTAGGTTA-G
*
15708959 GGTTTTAATTCAATTAGGTTA
60 GGTTTTAATTCAATTAAGTTA
*
15708980 GGTTAGGGTTTTCAATTCAATT-A-A-GTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGGTT
1 GGTTAGGGTTTT-AATTAAATTAATAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTA-GGGTT
*
15709042 TTAATTCAATTAGGTTA
64 TTAATTCAATTAAGTTA
* * *
15709059 GGTTTTAGGGTTTATAATTACATTAAGATAGGTTAGGGTTTTTAATTCAATTAGGTTAGGTTAGG
1 GG--TTAGGGTTT-TAATTAAATT-A-ATAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGG
15709124 GTTTTCAATTCAATTAAGTTA
61 GTTTT-AATTCAATTAAGTTA
* * * *
15709145 -G---GGTTTTTAATTAAATTAAGTTAGGTTAGGGGTTTTAATTCAATTAGGTTAGGTTAGGGTT
1 GGTTAGGGTTTTAATTAAATTAA--TAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTT
15709206 TTCAATTCAATTAAGTTA
64 TT-AATTCAATTAAGTTA
* * * *
15709224 -G---GGTTTTTAATTAAATTAAGTTAGGTTAGGGGTTTTAATTCAATTAGGTTAGGTTAGGGTT
1 GGTTAGGGTTTTAATTAAATTAA--TAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGG-T
15709285 TTTAATTCAATTAAGTTA
63 TTTAATTCAATTAAGTTA
15709303 GG
1 GG
15709305 GTTTTTAATT
Statistics
Matches: 612, Mismatches: 34, Indels: 65
0.86 0.05 0.09
Matches are distributed among these distances:
77 1 0.00
78 1 0.00
79 197 0.32
80 10 0.02
81 17 0.03
82 1 0.00
84 2 0.00
85 28 0.05
86 106 0.17
87 62 0.10
88 64 0.10
89 114 0.19
90 9 0.01
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.44
Consensus pattern (80 bp):
GGTTAGGGTTTTAATTAAATTAATAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTT
AATTCAATTAAGTTA
Found at i:15709305 original size:79 final size:79
Alignment explanation
Indices: 15708723--15709319 Score: 682
Period size: 79 Copynumber: 7.3 Consensus size: 79
15708713 AAGTTAAGGT
*
15708723 TTAGGGTTTATAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGT
* *
15708788 TTATAATTAAATTAAG
64 TTTTAATTCAATTAAG
*
15708804 TTAGGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTT
1 TTAGGG-T----TTTTAATTAAATTAAGTTA-GGTTAGGGTTTTTAATTAAATTAAGTTA-GG-T
* *
15708869 TAGGGTTTATAATTAAATTAAG
58 TAGGGTTTTTAATTCAATTAAG
*
15708891 TTAGGGTTAGGGTTTATAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGTT
1 TTAGGG-T----TTT-TAATTAAATTAAGTTA-GGTTAGGGTTTTTAATTAAATTAAGTTAGGTT
*
15708956 AGGGGTTTTAATTCAATTAGGTTAGG
59 AGGGTTTTTAATTCAATTA----A-G
* * *
15708982 TTAGGGTTTTCAATTCAATT-A---A-GTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGGTT
1 TTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTT
15709042 TTAATTCAATTAGGTTAGG
66 TTAATTCAATTA----A-G
* * * * *
15709061 TTTTAGGGTTTATAATTACATTAAGATAGGTTAGGGTTTTTAATTCAATTAGGTTAGGTTAGGGT
1 --TTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGT
*
15709126 TTTCAATTCAATTAAG
64 TTTTAATTCAATTAAG
* * *
15709142 TTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGGTTTTAATTCAATTAGGTTAGGTTAGGGTTT
1 TTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTT
*
15709207 TCAATTCAATTAAG
66 TTAATTCAATTAAG
* * *
15709221 TTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGGTTTTAATTCAATTAGGTTAGGTTAGGGTTT
1 TTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTT
15709286 TTAATTCAATTAAG
66 TTAATTCAATTAAG
15709300 TTAGGGTTTTTAATTAAATT
1 TTAGGGTTTTTAATTAAATT
15709320 TAGGGGTTTT
Statistics
Matches: 476, Mismatches: 21, Indels: 40
0.89 0.04 0.07
Matches are distributed among these distances:
79 230 0.48
81 24 0.05
82 3 0.01
85 9 0.02
86 116 0.24
87 40 0.08
88 45 0.09
90 2 0.00
91 7 0.01
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.44
Consensus pattern (79 bp):
TTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTT
TTAATTCAATTAAG
Found at i:15709324 original size:19 final size:19
Alignment explanation
Indices: 15709277--15709337 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
15709267 TTAGGTTAGG
*
15709277 TTAGGGTTTTTAATTCAATTAAG
1 TTAGGGTTTTTAATT--A--AAT
15709300 TTAGGGTTTTTAATTAAAT
1 TTAGGGTTTTTAATTAAAT
* *
15709319 TTAGGGGTTTTAATCAAAT
1 TTAGGGTTTTTAATTAAAT
15709338 AATGTCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 19 0.54
21 1 0.03
23 15 0.43
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (19 bp):
TTAGGGTTTTTAATTAAAT
Found at i:15711489 original size:14 final size:15
Alignment explanation
Indices: 15711472--15711505 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15711462 AATAAATATC
15711472 TAAAAATA-CATAAA
1 TAAAAATAGCATAAA
*
15711486 TAAAAATAGCTTAAA
1 TAAAAATAGCATAAA
15711501 TAAAA
1 TAAAA
15711506 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (15 bp):
TAAAAATAGCATAAA
Found at i:15711732 original size:22 final size:22
Alignment explanation
Indices: 15711702--15711743 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15711692 ATTTGGAGAT
*
15711702 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
15711724 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
15711744 TTTGAGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:15711770 original size:22 final size:21
Alignment explanation
Indices: 15711745--15711821 Score: 93
Period size: 22 Copynumber: 3.6 Consensus size: 21
15711735 ATTTGAGAGT
*
15711745 TTGAGATAATTTTGGAAGGAAA
1 TTGAGAGAATTTT-GAAGGAAA
*
15711767 TTGAGAGAACTTTTGAAGGGAA
1 TTGAGAGAA-TTTTGAAGGAAA
*
15711789 TTGAGAGAATTTTTGAA-GAAT
1 TTGAGAGAA-TTTTGAAGGAAA
15711810 TTGAGAGAATTT
1 TTGAGAGAATTT
15711822 GTTTGTGAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
20 3 0.06
21 11 0.22
22 31 0.63
23 4 0.08
ACGTcount: A:0.38, C:0.01, G:0.27, T:0.34
Consensus pattern (21 bp):
TTGAGAGAATTTTGAAGGAAA
Found at i:15721960 original size:41 final size:41
Alignment explanation
Indices: 15721915--15722012 Score: 160
Period size: 41 Copynumber: 2.4 Consensus size: 41
15721905 CAACGACACA
* *
15721915 TAGCCTGCTAGACTTATAGCCTGATTCAGATCATCGGCACG
1 TAGCCTGCTAGACTTATAACCTGATTCAGATCACCGGCACG
**
15721956 TAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGGCACG
1 TAGCCTGCTAGACTTATAACCTGATTCAGATCACCGGCACG
15721997 TAGCCTGCTAGACTTA
1 TAGCCTGCTAGACTTA
15722013 AAGTCTGAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (41 bp):
TAGCCTGCTAGACTTATAACCTGATTCAGATCACCGGCACG
Found at i:15722716 original size:12 final size:12
Alignment explanation
Indices: 15722671--15722721 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
15722661 AATAACTTTT
**
15722671 ATATATATATGT
1 ATATATATATAC
*
15722683 ATATATATTCTAGC
1 ATATATA-TATA-C
15722697 AT-TATATATAC
1 ATATATATATAC
15722708 ATATATATATAC
1 ATATATATATAC
15722720 AT
1 AT
15722722 GCTTATTCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
11 3 0.09
12 21 0.66
13 6 0.19
14 2 0.06
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (12 bp):
ATATATATATAC
Found at i:15725291 original size:4 final size:4
Alignment explanation
Indices: 15725282--15725306 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15725272 TTCACAGAAA
15725282 ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC A
15725307 ACACCTCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:15729640 original size:84 final size:84
Alignment explanation
Indices: 15729533--15729940 Score: 762
Period size: 84 Copynumber: 4.9 Consensus size: 84
15729523 CAAAGGATCC
* *
15729533 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
15729598 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
15729617 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
15729682 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
15729701 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
15729766 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
15729785 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
15729850 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* ** *
15729869 CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACC
1 CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
15729934 CCTTTCA
66 CCTTTCA
15729941 TTCAAAGAAT
Statistics
Matches: 318, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 318 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.21
Consensus pattern (84 bp):
CGGTGAAATCAGTACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:15732621 original size:30 final size:31
Alignment explanation
Indices: 15732587--15732646 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
15732577 AAACCTTTTA
*
15732587 TTTTTCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
* *
15732617 TTTTTCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCA
15732647 TCCCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:15732925 original size:17 final size:17
Alignment explanation
Indices: 15732905--15732951 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
15732895 CACATTTTAT
15732905 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
15732922 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
15732940 A-TATTTATATTA
1 ATTATTTATATTA
15732952 AAATTGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.11
17 14 0.52
18 8 0.30
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:15737175 original size:16 final size:16
Alignment explanation
Indices: 15737154--15737194 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
15737144 TTTTATATAA
15737154 ATATAAATATTTGT-TT
1 ATATAAATATTT-TCTT
15737170 ATATAAATATTTTCTT
1 ATATAAATATTTTCTT
15737186 ATATTAAAT
1 ATA-TAAAT
15737195 TGTATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.04
16 17 0.74
17 5 0.22
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (16 bp):
ATATAAATATTTTCTT
Found at i:15740334 original size:16 final size:16
Alignment explanation
Indices: 15740313--15740353 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
15740303 TTTTATATAA
15740313 ATATAAATATTTGT-TT
1 ATATAAATATTT-TCTT
15740329 ATATAAATATTTTCTT
1 ATATAAATATTTTCTT
15740345 ATATTAAAT
1 ATA-TAAAT
15740354 TGTATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.04
16 17 0.74
17 5 0.22
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (16 bp):
ATATAAATATTTTCTT
Found at i:15746219 original size:21 final size:19
Alignment explanation
Indices: 15746195--15746236 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
15746185 CCTTTTATTG
*
15746195 TTATTTGCTATTATTTTGTTA
1 TTATTTGCT-GTATTTT-TTA
15746216 TTATTTGCTGTATTTTTTA
1 TTATTTGCTGTATTTTTTA
15746235 TT
1 TT
15746237 CATTCATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 6 0.30
21 9 0.45
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.69
Consensus pattern (19 bp):
TTATTTGCTGTATTTTTTA
Found at i:15750381 original size:22 final size:22
Alignment explanation
Indices: 15750354--15750396 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
15750344 TATGAATATG
15750354 TGTGTTTATGTGACATGTGACA
1 TGTGTTTATGTGACATGTGACA
15750376 TGTGTTTATGTGACATGTGAC
1 TGTGTTTATGTGACATGTGAC
15750397 CATTATGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.42
Consensus pattern (22 bp):
TGTGTTTATGTGACATGTGACA
Found at i:15750493 original size:39 final size:39
Alignment explanation
Indices: 15750427--15750525 Score: 101
Period size: 39 Copynumber: 2.5 Consensus size: 39
15750417 AGGATGTTTT
* * *
15750427 TGAGTATTGTGACATAAGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTAGGTGATTATA
* ** *
15750466 TGAGTATTGTGATATATGTTTGTATGTTAGGTTATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTAGGTGATTATA
* *
15750505 T-ATGTAATATGATATATGCTT
1 TGA-GTATTGTGATATATGCTT
15750526 GAAAGTGAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
38 1 0.02
39 48 0.98
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTAGGTGATTATA
Found at i:15754934 original size:12 final size:12
Alignment explanation
Indices: 15754917--15754949 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
15754907 AGACAAATTT
15754917 TCTTTTCTTTTA
1 TCTTTTCTTTTA
15754929 TCTTTTC-TTTA
1 TCTTTTCTTTTA
15754940 -CTTTTCTTTT
1 TCTTTTCTTTT
15754950 TACTTTTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 6 0.30
11 7 0.35
12 7 0.35
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTTCTTTTA
Found at i:15754951 original size:12 final size:11
Alignment explanation
Indices: 15754914--15754956 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
15754904 ATAAGACAAA
15754914 TTTT-CTTTTC
1 TTTTACTTTTC
15754924 TTTTATCTTTTC
1 TTTTA-CTTTTC
15754936 -TTTACTTTTC
1 TTTTACTTTTC
15754946 TTTTTACTTTT
1 -TTTTACTTTT
15754957 AGAATATGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.34
11 4 0.14
12 15 0.52
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTACTTTTC
Found at i:15754997 original size:28 final size:29
Alignment explanation
Indices: 15754953--15755008 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
15754943 TTCTTTTTAC
* *
15754953 TTTTAGAATATGGTTTTCTTTTATTTTCT
1 TTTTAGAATATGATTTTATTTTATTTTCT
15754982 TTTTAGAATA-GATTTTATTTTATTTTC
1 TTTTAGAATATGATTTTATTTTATTTTC
15755009 CTTCTTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.21, C:0.05, G:0.09, T:0.64
Consensus pattern (29 bp):
TTTTAGAATATGATTTTATTTTATTTTCT
Found at i:15760614 original size:32 final size:32
Alignment explanation
Indices: 15760564--15760656 Score: 96
Period size: 32 Copynumber: 2.9 Consensus size: 32
15760554 AGCCATAAAT
* * **
15760564 ACAGTAATATGATTGGCACAAAGCCATCATTA
1 ACAGTAACATGATCGGCACAAAGCCATCAGAA
** * *
15760596 GTAGTGACATGATCGGCACACAGCCATCAGAA
1 ACAGTAACATGATCGGCACAAAGCCATCAGAA
* *
15760628 ACGGTAATATGATCGGCACAAAGCCATCA
1 ACAGTAACATGATCGGCACAAAGCCATCA
15760657 ATAGCATCAT
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (32 bp):
ACAGTAACATGATCGGCACAAAGCCATCAGAA
Found at i:15760858 original size:24 final size:24
Alignment explanation
Indices: 15760831--15760912 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
15760821 CCATGTTCAG
*
15760831 AATCAGTTATACAAATAACAGACA
1 AATCAGTCATACAAATAACAGACA
* * *
15760855 AATCAGTCATACCAATTATAGACA
1 AATCAGTCATACAAATAACAGACA
** *
15760879 AATCAGTCATTTAAA-ACACACACA
1 AATCAGTCATACAAATA-ACAGACA
15760903 AATCAGTCAT
1 AATCAGTCAT
15760913 TTACGTCACG
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.49, C:0.21, G:0.07, T:0.23
Consensus pattern (24 bp):
AATCAGTCATACAAATAACAGACA
Found at i:15760927 original size:24 final size:24
Alignment explanation
Indices: 15760848--15760941 Score: 84
Period size: 24 Copynumber: 3.9 Consensus size: 24
15760838 TATACAAATA
*
15760848 ACAGACAAATCAGTCA--TACCAATT
1 ACAGACAAATCAGTCATTTA-CAA-C
* *
15760872 ATAGACAAATCAGTCATTTAAAAC
1 ACAGACAAATCAGTCATTTACAAC
* **
15760896 ACACACAAATCAGTCATTTACGTC
1 ACAGACAAATCAGTCATTTACAAC
* *
15760920 ACGGACAAATCAATCATTTACA
1 ACAGACAAATCAGTCATTTACA
15760942 CTCGTAGGGA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
24 52 0.93
25 2 0.04
26 2 0.04
ACGTcount: A:0.45, C:0.23, G:0.09, T:0.23
Consensus pattern (24 bp):
ACAGACAAATCAGTCATTTACAAC
Found at i:15761032 original size:27 final size:27
Alignment explanation
Indices: 15760978--15761181 Score: 133
Period size: 27 Copynumber: 7.6 Consensus size: 27
15760968 CTCCAAAGGC
* * ***
15760978 ATTACGGTCATTTTACCTTACAAGGGT
1 ATTACGATCATTTTACCATATGGGGGT
* *
15761005 ATTTCGATC-TTTTAGCCCTATGGGGGT
1 ATTACGATCATTTTA-CCATATGGGGGT
* * * *
15761032 ATTACGGTCATTTTACCTTATAGGGGC
1 ATTACGATCATTTTACCATATGGGGGT
**
15761059 ATTACGATCATTTTACCATATGGGGAC
1 ATTACGATCATTTTACCATATGGGGGT
* * **
15761086 ATTACGGTCATTTTACCCTATAAGGGT
1 ATTACGATCATTTTACCATATGGGGGT
* * * ** *
15761113 -TTTCGGTCATTTTACCCTACAGAGGT
1 ATTACGATCATTTTACCATATGGGGGT
* * * *
15761139 ATTACGGTCATTTTACCTTATAGGGGC
1 ATTACGATCATTTTACCATATGGGGGT
*
15761166 ATTACGGTCATTTTAC
1 ATTACGATCATTTTAC
15761182 AAATATTAAG
Statistics
Matches: 144, Mismatches: 30, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 27 0.19
27 112 0.78
28 5 0.03
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
ATTACGATCATTTTACCATATGGGGGT
Found at i:15761037 original size:54 final size:54
Alignment explanation
Indices: 15760978--15761181 Score: 241
Period size: 54 Copynumber: 3.8 Consensus size: 54
15760968 CTCCAAAGGC
*
15760978 ATTACGGTCATTTTACCTTACAAGGGTATTTCGATC-TTTTAGCCCTATGGGGGT
1 ATTACGGTCATTTTACCTTATAAGGGTATTTCGATCATTTTA-CCCTATGGGGGT
* * * * **
15761032 ATTACGGTCATTTTACCTTATAGGGGCATTACGATCATTTTACCATATGGGGAC
1 ATTACGGTCATTTTACCTTATAAGGGTATTTCGATCATTTTACCCTATGGGGGT
* * ** *
15761086 ATTACGGTCATTTTACCCTATAAGGGT-TTTCGGTCATTTTACCCTACAGAGGT
1 ATTACGGTCATTTTACCTTATAAGGGTATTTCGATCATTTTACCCTATGGGGGT
* * * *
15761139 ATTACGGTCATTTTACCTTATAGGGGCATTACGGTCATTTTAC
1 ATTACGGTCATTTTACCTTATAAGGGTATTTCGATCATTTTAC
15761182 AAATATTAAG
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 42 0.33
54 79 0.63
55 5 0.04
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (54 bp):
ATTACGGTCATTTTACCTTATAAGGGTATTTCGATCATTTTACCCTATGGGGGT
Found at i:15761149 original size:107 final size:108
Alignment explanation
Indices: 15760977--15761181 Score: 324
Period size: 107 Copynumber: 1.9 Consensus size: 108
15760967 CCTCCAAAGG
* ** *
15760977 CATTACGGTCATTTTACCTTACAAGGGTATTTCGATCTTTTAGCCCTATGGGGGTATTACGGTCA
1 CATTACGGTCATTTTACCCTACAAGGGTATTTCGATCTTTTAGCCCTACAGAGGTATTACGGTCA
15761042 TTTTACCTTATAGGGGCATTACGATCATTTTACCATATGGGGA
66 TTTTACCTTATAGGGGCATTACGATCATTTTACCATATGGGGA
* *
15761085 CATTACGGTCATTTTACCCTATAAGGGT-TTTCGGTCATTTTA-CCCTACAGAGGTATTACGGTC
1 CATTACGGTCATTTTACCCTACAAGGGTATTTCGATC-TTTTAGCCCTACAGAGGTATTACGGTC
*
15761148 ATTTTACCTTATAGGGGCATTACGGTCATTTTAC
65 ATTTTACCTTATAGGGGCATTACGATCATTTTAC
15761182 AAATATTAAG
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
107 58 0.65
108 31 0.35
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (108 bp):
CATTACGGTCATTTTACCCTACAAGGGTATTTCGATCTTTTAGCCCTACAGAGGTATTACGGTCA
TTTTACCTTATAGGGGCATTACGATCATTTTACCATATGGGGA
Found at i:15761150 original size:80 final size:80
Alignment explanation
Indices: 15760958--15761181 Score: 247
Period size: 80 Copynumber: 2.8 Consensus size: 80
15760948 GGGAAAAATA
* * ** * * *
15760958 GTCA-TTTACCCTCCAAAGGCATTACGGTCATTTTACCTTACAAGGGTATTTCGATC-TTTTAGC
1 GTCATTTTACCCTACAGAGGCATTACGGTCATTTTACCTTA-TGGGGCATTACGGTCATTTTA-C
**
15761021 CCTATGGGGGTATTACG
64 CCTATAAGGGTATTACG
* * * * *
15761038 GTCATTTTACCTTATAGGGGCATTACGATCATTTTACCATATGGGGACATTACGGTCATTTTACC
1 GTCATTTTACCCTACAGAGGCATTACGGTCATTTTACCTTATGGGG-CATTACGGTCATTTTACC
*
15761103 CTATAAGGGT-TTTCG
65 CTATAAGGGTATTACG
*
15761118 GTCATTTTACCCTACAGAGGTATTACGGTCATTTTACCTTATAGGGGCATTACGGTCATTTTAC
1 GTCATTTTACCCTACAGAGGCATTACGGTCATTTTACCTTAT-GGGGCATTACGGTCATTTTAC
15761182 AAATATTAAG
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
80 64 0.54
81 50 0.42
82 5 0.04
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (80 bp):
GTCATTTTACCCTACAGAGGCATTACGGTCATTTTACCTTATGGGGCATTACGGTCATTTTACCC
TATAAGGGTATTACG
Found at i:15761199 original size:80 final size:80
Alignment explanation
Indices: 15761036--15761199 Score: 199
Period size: 80 Copynumber: 2.0 Consensus size: 80
15761026 GGGGGTATTA
* * *
15761036 CGGTCATTTTACCTTATAGGGGCATTACGATCATTTTACCATATGGGGACATTACGGTCATTTTA
1 CGGTCATTTTACCCTACAGAGGCATTACGATCATTTTACCATATGGGGACATTACGGTCATTTTA
** *
15761101 CCCTATAAGGGTTTT
66 CAATATAAGGGTTCT
* * *
15761116 CGGTCATTTTACCCTACAGAGGTATTACGGTCATTTTACCTTATAGGGG-CATTACGGTCATTTT
1 CGGTCATTTTACCCTACAGAGGCATTACGATCATTTTACCATAT-GGGGACATTACGGTCATTTT
15761180 ACAAATATTAA-GG-TCT
65 AC-AATA-TAAGGGTTCT
15761196 CGGT
1 CGGT
15761200 ACTTATTACG
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 61 0.85
81 8 0.11
82 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (80 bp):
CGGTCATTTTACCCTACAGAGGCATTACGATCATTTTACCATATGGGGACATTACGGTCATTTTA
CAATATAAGGGTTCT
Found at i:15762262 original size:17 final size:17
Alignment explanation
Indices: 15762240--15762274 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
15762230 TGATATTTGC
*
15762240 ATTTTTTTTCTATTTGTT
1 ATTTTTTAT-TATTTGTT
15762258 ATTTTTTATTATTTGTT
1 ATTTTTTATTATTTGTT
15762275 CTACATACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.77
Consensus pattern (17 bp):
ATTTTTTATTATTTGTT
Found at i:15763113 original size:24 final size:24
Alignment explanation
Indices: 15763081--15763134 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
15763071 GTACATATAT
*
15763081 ATATATTTTTAAATGAATATTTTC
1 ATATTTTTTTAAATGAATATTTTC
* *
15763105 CTATTTTTTTTAATGAATATTTTC
1 ATATTTTTTTAAATGAATATTTTC
15763129 ATATTT
1 ATATTT
15763135 ATATGTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (24 bp):
ATATTTTTTTAAATGAATATTTTC
Found at i:15767482 original size:45 final size:45
Alignment explanation
Indices: 15767431--15767523 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 45
15767421 TGATTCTGGA
* *
15767431 CTTTGAAGCAGACAAAGAGGTGCTAATCATCCTAGGAA-ATCCATT
1 CTTTGAAGCAGACAAAAAGGTGCCAATCATCCTAGGAAGA-CCATT
**
15767476 CTTTGAAGTTGACAAAAAGGTGCCAATCATCCTAGGAAGACCATT
1 CTTTGAAGCAGACAAAAAGGTGCCAATCATCCTAGGAAGACCATT
15767521 CTT
1 CTT
15767524 AGCAACCGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
45 42 0.98
46 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (45 bp):
CTTTGAAGCAGACAAAAAGGTGCCAATCATCCTAGGAAGACCATT
Found at i:15771791 original size:20 final size:19
Alignment explanation
Indices: 15771763--15771800 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
15771753 AATATTTCTC
15771763 CTAAATTTTAATTTTATTAT
1 CTAAATTTTAA-TTTATTAT
*
15771783 CTAATTTTTAATTTATTA
1 CTAAATTTTAATTTATTA
15771801 AATTATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
CTAAATTTTAATTTATTAT
Found at i:15782588 original size:142 final size:143
Alignment explanation
Indices: 15782330--15782595 Score: 392
Period size: 142 Copynumber: 1.9 Consensus size: 143
15782320 GTCAAAACCT
* * *
15782330 ACCTCACTTGGCTATCCGTAATTGTTGGTGCAAGTCACGTGCCATGGAAAAACTATTTAGGGGTC
1 ACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGG-AAAACTATCTAAGGGTC
*
15782395 TACTTCCATAAGTCCGCAAGTAAGAATCTACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGA
65 TACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGA
15782460 GTTCACCAAGACCC
130 GTTCACCAAGACCC
* * ** * *
15782474 ACCTCACTTGGTTATCCGT-ATCTATTGGTGCAAGTCATGTGCTGTGG-GAATTATCTAAGGGTC
1 ACCTCACTTGGCTATCCGTAAT-TATTGGTGCAAGTCACGTGCCATGGAAAACTATCTAAGGGTC
* *
15782537 TTCTTCCATAAGTCCGCAAGTAAGAATCCGCAAGGATTACCTCTCAAGGAAGTAATTGC
65 TACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGC
15782596 ACAAGACTCC
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
142 68 0.62
143 2 0.02
144 39 0.36
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (143 bp):
ACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGGAAAACTATCTAAGGGTCT
ACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGAG
TTCACCAAGACCC
Found at i:15787647 original size:141 final size:140
Alignment explanation
Indices: 15787359--15787635 Score: 337
Period size: 141 Copynumber: 2.0 Consensus size: 140
15787349 AACTATTCGT
* *
15787359 CAAGACCTCACTCACTTGGCTATCTATACCTGTTGCTGAAAGTCACGTGCCATGGGAATTATTTA
1 CAAGACCTCACTCACTTAGCTATCTATA-CTGTTGCTGAAAGTCACGTGCCATGGGAATTATCTA
** *
15787424 GGGGTCTTCTTCCATAAATCCGCAAGTAAGAATCTGCAAGGATTACCTCTCAAGGAAGTAATTGT
65 GGGGTCTTCTTCCATAAATCCGCAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAATTAT
* * *
15787489 GTAGGATTTCA
130 GCAAGATTGCA
* * *
15787500 CTAAGACC-CACCTCACTTAGCTATCCTATA-TGTTGGTGCAAGTCACGTGATC-TGGGAATTAT
1 C-AAGACCTCA-CTCACTTAGCTAT-CTATACTGTTGCTGAAAGTCACGTG-CCATGGGAATTAT
* * * *
15787562 CTAGGGGTCTTCTTCCATAAGT-CGACAAGTAAGAATCCCCAAGGATTACCTTTTAAGTAAGTAA
62 CTAGGGGTCTTCTTCCATAAATCCG-CAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAA
15787626 TTATGCAAGA
126 TTATGCAAGA
15787636 GTCTGCCAAG
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
140 2 0.02
141 91 0.78
142 19 0.16
143 5 0.04
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (140 bp):
CAAGACCTCACTCACTTAGCTATCTATACTGTTGCTGAAAGTCACGTGCCATGGGAATTATCTAG
GGGTCTTCTTCCATAAATCCGCAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAATTATG
CAAGATTGCA
Found at i:15794940 original size:22 final size:22
Alignment explanation
Indices: 15794912--15794955 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
15794902 TCGAGTGACT
15794912 TTACACAAAACTAATGAGAGCA
1 TTACACAAAACTAATGAGAGCA
15794934 TTACACAAAACTAATGAGAGCA
1 TTACACAAAACTAATGAGAGCA
15794956 AGGATGGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.18, G:0.14, T:0.18
Consensus pattern (22 bp):
TTACACAAAACTAATGAGAGCA
Found at i:15810686 original size:13 final size:13
Alignment explanation
Indices: 15810668--15810694 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15810658 CATGGGATAG
15810668 GCCACACGGGCAT
1 GCCACACGGGCAT
15810681 GCCACACGGGCAT
1 GCCACACGGGCAT
15810694 G
1 G
15810695 AGAGTTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.33, T:0.07
Consensus pattern (13 bp):
GCCACACGGGCAT
Found at i:15819287 original size:19 final size:20
Alignment explanation
Indices: 15819255--15819310 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
15819245 AATTTAATTT
*
15819255 TTTTTATAATTTTTTATG-A
1 TTTTTATAAGTTTTTATGAA
* *
15819274 TTTTTATAGGTTTTTAAGAA
1 TTTTTATAAGTTTTTATGAA
* *
15819294 TTTTAATACGTTTTTAT
1 TTTTTATAAGTTTTTAT
15819311 AAAATTCTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.27, C:0.02, G:0.09, T:0.62
Consensus pattern (20 bp):
TTTTTATAAGTTTTTATGAA
Found at i:15819308 original size:21 final size:21
Alignment explanation
Indices: 15819284--15819334 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
15819274 TTTTTATAGG
*
15819284 TTTTTAAGAATT-TTAATACGT
1 TTTTTAA-AATTCTAAATACGT
*
15819305 TTTTATAAAATTCTAAATATGT
1 TTTT-TAAAATTCTAAATACGT
15819327 TTTATTAA
1 TTT-TTAA
15819335 TTTTATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 8 0.32
22 16 0.64
23 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (21 bp):
TTTTTAAAATTCTAAATACGT
Found at i:15819440 original size:14 final size:15
Alignment explanation
Indices: 15819423--15819452 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
15819413 AATTTCAATA
15819423 TATTTTTAATA-TTT
1 TATTTTTAATACTTT
15819437 TATTTTTAATACTTT
1 TATTTTTAATACTTT
15819452 T
1 T
15819453 TATAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTAATACTTT
Found at i:15819461 original size:9 final size:9
Alignment explanation
Indices: 15819369--15819502 Score: 55
Period size: 9 Copynumber: 14.9 Consensus size: 9
15819359 AGAATCTTTT
15819369 ATTTTTATA
1 ATTTTTATA
*
15819378 ATATTTATA
1 ATTTTTATA
**
15819387 GGTTTTAT-
1 ATTTTTATA
15819395 -TTTTTATA
1 ATTTTTATA
*
15819403 AGTTTATATA
1 A-TTTTTATA
* *
15819413 AATTTCA-A
1 ATTTTTATA
15819421 TATATTTT-TA
1 -AT-TTTTATA
15819431 ATATTTTAT-
1 AT-TTTTATA
*
15819440 -TTTTAATA
1 ATTTTTATA
*
15819448 CTTTTTATA
1 ATTTTTATA
* *
15819457 ATTTTTCTG
1 ATTTTTATA
15819466 ATTTGTTATA
1 ATTT-TTATA
* *
15819476 ATTTTTCTT
1 ATTTTTATA
*
15819485 ATTTTTAATT
1 ATTTTT-ATA
15819495 ATTTTTAT
1 ATTTTTAT
15819503 GAAAAATATT
Statistics
Matches: 93, Mismatches: 21, Indels: 22
0.68 0.15 0.16
Matches are distributed among these distances:
7 11 0.12
8 2 0.02
9 52 0.56
10 28 0.30
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:15819500 original size:19 final size:19
Alignment explanation
Indices: 15819452--15819488 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15819442 TTAATACTTT
15819452 TTATAATTTTTCTGATTTG
1 TTATAATTTTTCTGATTTG
*
15819471 TTATAATTTTTCTTATTT
1 TTATAATTTTTCTGATTT
15819489 TTAATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (19 bp):
TTATAATTTTTCTGATTTG
Found at i:15823969 original size:50 final size:50
Alignment explanation
Indices: 15823910--15824100 Score: 167
Period size: 50 Copynumber: 3.8 Consensus size: 50
15823900 GATGGTCATG
*
15823910 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAATGTCTCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAAATGTCTCA
* * * **
15823960 TGTGTAGTACTATATGCAGGCTACTATGCGTACCGG-AT-AGCT-TCGATCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAAATGTC--TCA
* * * ** *
15824009 CGTGTGTAGTACTATGTGCAGGCTACTACGTGAACTGGAAAG-TTTGATCACA
1 --TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAAATG-TCTCA
* * *
15824061 TGTGTAATACTATGTGAAGGCTACTACGTGTATC-GAATGA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGA
15824101 TAATAGTTAA
Statistics
Matches: 111, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
47 2 0.02
48 2 0.02
49 9 0.08
50 61 0.55
51 31 0.28
52 4 0.04
54 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAAATGTCTCA
Found at i:15832676 original size:13 final size:13
Alignment explanation
Indices: 15832637--15832678 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
15832627 TCATAAGAGC
15832637 TAACACATCATA-
1 TAACACATCATAT
*
15832649 TATCACATGTCATAT
1 TAACACA--TCATAT
15832664 TAACACATCATAT
1 TAACACATCATAT
15832677 TA
1 TA
15832679 CTTAATCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 6 0.24
13 8 0.32
14 5 0.20
15 6 0.24
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.33
Consensus pattern (13 bp):
TAACACATCATAT
Found at i:15834055 original size:76 final size:76
Alignment explanation
Indices: 15833968--15834149 Score: 364
Period size: 76 Copynumber: 2.4 Consensus size: 76
15833958 GTTATGAATC
15833968 TAAATATATGTTAGGGAATTTATTAAATTGGACTTACAAAAATAATAAAACTAACTATTTTTATA
1 TAAATATATGTTAGGGAATTTATTAAATTGGACTTACAAAAATAATAAAACTAACTATTTTTATA
15834033 AAACATACTAA
66 AAACATACTAA
15834044 TAAATATATGTTAGGGAATTTATTAAATTGGACTTACAAAAATAATAAAACTAACTATTTTTATA
1 TAAATATATGTTAGGGAATTTATTAAATTGGACTTACAAAAATAATAAAACTAACTATTTTTATA
15834109 AAACATACTAA
66 AAACATACTAA
15834120 TAAATATATGTTAGGGAATTTATTAAATTG
1 TAAATATATGTTAGGGAATTTATTAAATTG
15834150 ATATTCTGTC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 106 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (76 bp):
TAAATATATGTTAGGGAATTTATTAAATTGGACTTACAAAAATAATAAAACTAACTATTTTTATA
AAACATACTAA
Found at i:15842509 original size:31 final size:31
Alignment explanation
Indices: 15842471--15842533 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 31
15842461 GAGCACAAAG
15842471 CAATGTGGGCAATTAAG-CAAGTGAACATGGA
1 CAATGTGGGCAATTAAGCCAA-TGAACATGGA
15842502 CAATGTGGGCAATTAAGCCAATGAACATGGA
1 CAATGTGGGCAATTAAGCCAATGAACATGGA
15842533 C
1 C
15842534 TATGAAGCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (31 bp):
CAATGTGGGCAATTAAGCCAATGAACATGGA
Found at i:15845223 original size:17 final size:17
Alignment explanation
Indices: 15845201--15845233 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15845191 GTTAGTGCAC
*
15845201 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
15845218 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
15845234 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:15848357 original size:61 final size:61
Alignment explanation
Indices: 15848269--15848383 Score: 158
Period size: 61 Copynumber: 1.9 Consensus size: 61
15848259 AATTAATCAC
* * *
15848269 ATTAATATTACATGAATAAAATATTATCAAGATAAATATTAATTTAAATTTAATTCCTCAT
1 ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAATTCCTCAT
* * * * *
15848330 ATTAATATTAAATTAATACAATGTTATCTAGGTAAATATTAAATTAAAATTAAT
1 ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAAT
15848384 ATAATACTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (61 bp):
ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAATTCCTCAT
Found at i:15848369 original size:37 final size:36
Alignment explanation
Indices: 15848328--15848421 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 36
15848318 TTAATTCCTC
** * *
15848328 ATATTAATATTAAATTAATACAATGTTATCTAGGTAA
1 ATATTAA-ATTAAATTAATACAATACTATATAGATAA
*
15848365 ATATTAAATTAAAATTAATATAATACTATATAGATAA
1 ATATTAAATT-AAATTAATACAATACTATATAGATAA
*
15848402 ATATGAAATTAAATTTAATA
1 ATATTAAATTAAA-TTAATA
15848422 TTAAATTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
36 6 0.12
37 43 0.88
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.39
Consensus pattern (36 bp):
ATATTAAATTAAATTAATACAATACTATATAGATAA
Found at i:15867499 original size:30 final size:30
Alignment explanation
Indices: 15867463--15867523 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
15867453 TCAATTGATA
*
15867463 ATTAGCTATGGATTAAAACAAACATGCAAC
1 ATTAGCTATGAATTAAAACAAACATGCAAC
15867493 ATTAGCTATGAATTAAAACAAACATGCAAC
1 ATTAGCTATGAATTAAAACAAACATGCAAC
15867523 A
1 A
15867524 ATCTTGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.23
Consensus pattern (30 bp):
ATTAGCTATGAATTAAAACAAACATGCAAC
Found at i:15867610 original size:67 final size:67
Alignment explanation
Indices: 15867432--15867672 Score: 299
Period size: 67 Copynumber: 3.5 Consensus size: 67
15867422 AGATGCCAAT
*
15867432 AATACACGAACAATTTTACATTCAATTGATAATTAGCTATGGATTAAAACAAACATGCAACATTA
1 AATACACGAACAATTTTACATTCAATTGATAATTAGCTATGGATTAAAACAAACATACAACA-T-
*
15867497 GCTATG
64 --TATC
* * *** * *
15867503 AATTAAAACAAAC-ATGCAACAATC--TTGGTTGACATTAGCTATGGATTAAAACAAACATACAA
1 AA-T-ACACGAACAATTTTACATTCAATT-GAT-A-ATTAGCTATGGATTAAAACAAACATACAA
15867565 CATTATC
61 CATTATC
15867572 AATACACGAACAATTTTACATTCAATTGATAATTAGCTATGGATTAAAACAAACATACAACATTA
1 AATACACGAACAATTTTACATTCAATTGATAATTAGCTATGGATTAAAACAAACATACAACATTA
15867637 TC
66 TC
15867639 AATACACGAACAATTTTACATTCAATTGATAATT
1 AATACACGAACAATTTTACATTCAATTGATAATT
15867673 CAAGCAAATT
Statistics
Matches: 146, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
67 76 0.52
68 9 0.06
69 7 0.05
70 4 0.03
71 4 0.03
72 10 0.07
73 36 0.25
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.29
Consensus pattern (67 bp):
AATACACGAACAATTTTACATTCAATTGATAATTAGCTATGGATTAAAACAAACATACAACATTA
TC
Found at i:15875491 original size:40 final size:40
Alignment explanation
Indices: 15875444--15875522 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
15875434 TTATTAAAGC
15875444 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
1 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
15875484 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAAT
1 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAAT
15875523 AAACTATTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (40 bp):
AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
Found at i:15878733 original size:45 final size:45
Alignment explanation
Indices: 15878665--15878758 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
15878655 AACAGATACT
* *
15878665 CGGTGGATTCAGCACATAACAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
* *
15878710 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
15878755 CGGT
1 CGGT
15878759 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
Found at i:15878818 original size:51 final size:50
Alignment explanation
Indices: 15878760--15878950 Score: 224
Period size: 51 Copynumber: 3.8 Consensus size: 50
15878750 ATGTTCGGTT
* *
15878760 CACATAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCC-GATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCAG-TA
* * *
15878811 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCAGTA
* * * * *
15878862 CGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCCAGTA
* *
15878912 TACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
15878951 CACTTTCACT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 74 0.63
52 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCAGTA
Found at i:15878944 original size:101 final size:101
Alignment explanation
Indices: 15878762--15878946 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
15878752 GTTCGGTTCA
* *
15878762 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCCGATACACATAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTAGCCTGCA
15878827 CATAGTACTACACACGTGATCGAAACTATCCAGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCAGTACG
* * * * *
15878864 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTAGTATACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGA-TACACATAGTAGCCTGCA
15878928 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
15878947 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 7 0.09
101 35 0.47
102 33 0.44
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCAGTACG
Found at i:15895345 original size:27 final size:27
Alignment explanation
Indices: 15895289--15895465 Score: 232
Period size: 27 Copynumber: 6.6 Consensus size: 27
15895279 ACCCTCAAAC
* *
15895289 TGTTATAAAATTACTATTACG-CCCTCA
1 TGTTATAAAATGACTATTATGCCCCT-A
**
15895316 TGTGGTAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
** *
15895343 TGTTATAAAATGACGGTTATGCCCTTA
1 TGTTATAAAATGACTATTATGCCCCTA
*
15895370 TGTTATAAAATGA-TGGTTATGCCCCTA
1 TGTTATAAAATGACT-ATTATGCCCCTA
* *
15895397 TGTTATAAAATGACAATTATGCTCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
15895424 TGTTATAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
15895451 TGTTATAAAATGACT
1 TGTTATAAAATGACT
15895466 GTATGCTTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 127 0.97
28 4 0.03
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (27 bp):
TGTTATAAAATGACTATTATGCCCCTA
Found at i:15898568 original size:37 final size:37
Alignment explanation
Indices: 15898518--15898596 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
15898508 TTATTACGAA
* * *
15898518 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
15898555 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
15898592 GTCTT
1 GTCTT
15898597 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:15898891 original size:47 final size:47
Alignment explanation
Indices: 15898717--15899217 Score: 795
Period size: 47 Copynumber: 10.5 Consensus size: 47
15898707 CTTCGGGACT
* * * * * * *
15898717 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * * *
15898764 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
15898813 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
15898862 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
15898909 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
15898956 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
15899003 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
15899050 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
15899097 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * * *
15899144 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
15899191 TATCACATATATATACACTTTCACATT
1 TATCAC--GTATATACACTTTCACATT
15899218 TATTCAAATA
Statistics
Matches: 433, Mismatches: 17, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 329 0.76
49 104 0.24
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:15900922 original size:13 final size:13
Alignment explanation
Indices: 15900904--15900928 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15900894 TACTAAATTT
15900904 TCATGGATTCAAG
1 TCATGGATTCAAG
15900917 TCATGGATTCAA
1 TCATGGATTCAA
15900929 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:15903517 original size:21 final size:21
Alignment explanation
Indices: 15903478--15903518 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15903468 AAGTTAATCA
* * *
15903478 AAAGAATAATAACATATAATG
1 AAAGAAGAATAAAAAATAATG
15903499 AAAGAAGAATAAAAAATAAT
1 AAAGAAGAATAAAAAATAAT
15903519 AGTTAGATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (21 bp):
AAAGAAGAATAAAAAATAATG
Found at i:15905151 original size:61 final size:59
Alignment explanation
Indices: 15905082--15905226 Score: 175
Period size: 60 Copynumber: 2.4 Consensus size: 59
15905072 TTTTTGAAAA
*
15905082 TTTTAGAATTAGAACCAAATTGATAAATTTTTGTAAATATTGAGGG-TAAATTTATTGAATT
1 TTTTAGAATTAG-ACCAAATTGATAAA-TTTTGTAAACATTGAGGGCTAAATTTATTG-ATT
* * * *
15905143 TTTTAGAATTTAGACTAAAATGACAAATTTTGTAAACATTGAGGGCTAAATTTGTTGATT
1 TTTTAGAA-TTAGACCAAATTGATAAATTTTGTAAACATTGAGGGCTAAATTTATTGATT
* *
15905203 TTTTAGATTTAGGATCAAATTGAT
1 TTTTAGAATTA-GACCAAATTGAT
15905227 TGAATGTGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 3 0.04
60 35 0.49
61 29 0.41
62 4 0.06
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (59 bp):
TTTTAGAATTAGACCAAATTGATAAATTTTGTAAACATTGAGGGCTAAATTTATTGATT
Found at i:15905204 original size:60 final size:62
Alignment explanation
Indices: 15905082--15905214 Score: 177
Period size: 61 Copynumber: 2.2 Consensus size: 62
15905072 TTTTTGAAAA
* * *
15905082 TTTTAGAA-TTAGAACCAAATTGATAAATTTTTGTAAATATTGAGGGTAAATTTATTGAATT
1 TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGGTAAATTTATTGAATT
* *
15905143 TTTTAGAATTTAG-ACTAAAATGACAAA-TTTTGTAAACATTGAGGGCTAAATTTGTTG-ATT
1 TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGG-TAAATTTATTGAATT
15905203 TTTTAG-ATTTAG
1 TTTTAGAATTTAG
15905215 GATCAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
59 6 0.09
60 26 0.40
61 29 0.45
62 4 0.06
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.43
Consensus pattern (62 bp):
TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGGTAAATTTATTGAATT
Found at i:15911216 original size:27 final size:27
Alignment explanation
Indices: 15911185--15911290 Score: 153
Period size: 27 Copynumber: 3.9 Consensus size: 27
15911175 TATATGACTG
*
15911185 AAATATCCCC-ATAGGGTAAAATGATCA
1 AAATA-CCCCTATAGGGTAAAATGACCA
15911212 AAATA-CCCTCATAGGGTAAAATGACCA
1 AAATACCCCT-ATAGGGTAAAATGACCA
*
15911239 AAATACCCCTATAGGGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACCA
*
15911266 AAATACCCCTATAGGATAAAATGAC
1 AAATACCCCTATAGGGTAAAATGAC
15911291 TATTATACCC
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.04
27 66 0.90
28 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACCA
Found at i:15920009 original size:26 final size:26
Alignment explanation
Indices: 15919945--15920043 Score: 83
Period size: 26 Copynumber: 3.8 Consensus size: 26
15919935 TCATTCCTAT
* * *
15919945 TTTACCCC-AACAAAATTTTGACAAT
1 TTTACCCCTAATAAAATTTTGACGAC
** * *
15919970 TTTACCTTTGATAAAATTTTGACGAT
1 TTTACCCCTAATAAAATTTTGACGAC
** * *
15919996 TTTGTCCCTAATAAAAGTTTGATGAC
1 TTTACCCCTAATAAAATTTTGACGAC
*
15920022 TTTACCCCTATTAAAATTTTGA
1 TTTACCCCTAATAAAATTTTGA
15920044 GAAAATATGT
Statistics
Matches: 56, Mismatches: 17, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
25 6 0.11
26 50 0.89
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.40
Consensus pattern (26 bp):
TTTACCCCTAATAAAATTTTGACGAC
Done.