Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 59 of 185
Found at i:18568847 original size:41 final size:41
Alignment explanation
Indices: 18568802--18569079 Score: 242
Period size: 41 Copynumber: 6.8 Consensus size: 41
18568792 GCTCAAGTAT
*
18568802 TTAGCGGCGCTTTTTAAGAAACGCCGTTAAAGACCGGAGCA
1 TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGACCGGAGCA
* * * * *
18568843 TTAGCAGCGCTTTCTGAGAAACGCTGCTAAAGACCGTAGCA
1 TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGACCGGAGCA
* * * **
18568884 TTAGCGGCGCTTTGTAAAAAACGCCGCTAAAGAACTAAGCA
1 TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGACCGGAGCA
* * * *
18568925 TTAGCGGCGCCTCTTACA-AAGCGCCGCTAAAGACCTGAGCA
1 TTAGCGGCGCTTTTTA-AGAAACGCCGCTAAAGACCGGAGCA
* * * **
18568966 TTAGCGGCGCATCTT-AGAAAACGCCACTAAAGACCTCAGCA
1 TTAGCGGCGCTTTTTAAG-AAACGCCGCTAAAGACCGGAGCA
* * * * *
18569007 CTAGCGGTGATTATTCAA-AAACGCCGCTAAAGACAGGAGCA
1 TTAGCGGCGCTT-TTTAAGAAACGCCGCTAAAGACCGGAGCA
*
18569048 TTAGCGGCG-TGTTTTGAA-AAGCGCCGCTAAAG
1 TTAGCGGCGCT-TTTT-AAGAAACGCCGCTAAAG
18569080 GCCCAAAAAA
Statistics
Matches: 192, Mismatches: 38, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
39 1 0.01
40 3 0.02
41 185 0.96
42 2 0.01
43 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.20
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGACCGGAGCA
Found at i:18568954 original size:82 final size:81
Alignment explanation
Indices: 18568802--18569079 Score: 272
Period size: 82 Copynumber: 3.4 Consensus size: 81
18568792 GCTCAAGTAT
* * ** * * *
18568802 TTAGCGGCGCTTTTTAAGAAACGCCGTTAAAGACCGGAGCATTAGCAGCGCTTTCTGAGAAACGC
1 TTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGACCTAAGCATTAGCGGCGC-TTCTTACAAACGC
*
18568867 TGCTAAAGACCGTAGCA
65 CGCTAAAGACCGTAGCA
* * *
18568884 TTAGCGGCGCTTTGTAAAAAACGCCGCTAAAGAACTAAGCATTAGCGGCGCCTCTTACAAAGCGC
1 TTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGACCTAAGCATTAGCGGCGCTTCTTACAAA-CGC
18568949 CGCTAAAGACC-TGAGCA
65 CGCTAAAGACCGT-AGCA
* * * * * * * * * *
18568966 TTAGCGGCGCATCTTAGAAAACGCCACTAAAGACCTCAGCACTAGCGGTGATTATTCAAAAACGC
1 TTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGACCTAAGCATTAGCGGCGCTTCTT-ACAAACGC
* *
18569031 CGCTAAAGACAGGAGCA
65 CGCTAAAGACCGTAGCA
* *
18569048 TTAGCGGCG-TGTTTTGAAAAGCGCCGCTAAAG
1 TTAGCGGCGCT-TTTTAAAAAACGCCGCTAAAG
18569080 GCCCAAAAAA
Statistics
Matches: 159, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
81 8 0.05
82 147 0.92
83 4 0.03
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.20
Consensus pattern (81 bp):
TTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGACCTAAGCATTAGCGGCGCTTCTTACAAACGCC
GCTAAAGACCGTAGCA
Found at i:18568956 original size:123 final size:122
Alignment explanation
Indices: 18568823--18569079 Score: 290
Period size: 123 Copynumber: 2.1 Consensus size: 122
18568813 TTTTAAGAAA
* * ** *
18568823 CGCCGTTAAAGACCGGAGCATTAGCAGCGCTTTCTGAG-AAACGCTGCTAAAGACCGT-AGCATT
1 CGCCGCTAAAGACCGGAGCATTAGCAGCGC-ATCTGAGAAAACGCCACTAAAGACC-TCAGCACT
*
18568886 AGCGGCGCTT-TGTAAAAAACGCCGCTAAAGAACTA-AGCATTAGCGGCGCCTCTT-ACAAAG
64 AGCGGCGATTAT-TAAAAAACGCCGCTAAAG-AC-AGAGCATTAGCGGCGCCTCTTGA-AAAG
* * *
18568946 CGCCGCTAAAGACCTGAGCATTAGCGGCGCATCTTAGAAAACGCCACTAAAGACCTCAGCACTAG
1 CGCCGCTAAAGACCGGAGCATTAGCAGCGCATCTGAGAAAACGCCACTAAAGACCTCAGCACTAG
* * ** *
18569011 CGGTGATTATTCAAAAACGCCGCTAAAGACAGGAGCATTAGCGGCGTGTTTTGAAAAG
66 CGGCGATTATTAAAAAACGCCGCTAAAGACA-GAGCATTAGCGGCGCCTCTTGAAAAG
18569069 CGCCGCTAAAG
1 CGCCGCTAAAG
18569080 GCCCAAAAAA
Statistics
Matches: 114, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
121 1 0.01
122 8 0.07
123 103 0.90
124 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.19
Consensus pattern (122 bp):
CGCCGCTAAAGACCGGAGCATTAGCAGCGCATCTGAGAAAACGCCACTAAAGACCTCAGCACTAG
CGGCGATTATTAAAAAACGCCGCTAAAGACAGAGCATTAGCGGCGCCTCTTGAAAAG
Found at i:18569156 original size:39 final size:38
Alignment explanation
Indices: 18569111--18569267 Score: 138
Period size: 41 Copynumber: 3.9 Consensus size: 38
18569101 CGTTCGGCTT
18569111 TCGTTTTTTGCGGCGCTTATTTGTAAA-CGCCGCTAATGC
1 TCGTTTTTTGCGGCG-TT-TTTGTAAAGCGCCGCTAATGC
* * ***
18569150 TTGTTTTTAGCGGCGTTTTACAAATAGCGCCGCTAATGC
1 TCGTTTTTTGCGGCGTTTTTGTAA-AGCGCCGCTAATGC
* *
18569189 TCGTATCTTTGGCGGCGTTTTGCGTAAAGCGCCGCTAATGC
1 TCGT-T-TTTTGCGGCGTTTT-TGTAAAGCGCCGCTAATGC
*
18569230 TCGATTTTTTGTGGCGTTTTTTGTCCAAA-CGCCGCTAA
1 TCG-TTTTTTGCGGCG-TTTTTGT--AAAGCGCCGCTAA
18569268 AAACGCCGCT
Statistics
Matches: 96, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
37 4 0.04
38 3 0.03
39 28 0.29
40 11 0.11
41 44 0.46
42 6 0.06
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (38 bp):
TCGTTTTTTGCGGCGTTTTTGTAAAGCGCCGCTAATGC
Found at i:18569271 original size:12 final size:12
Alignment explanation
Indices: 18569256--18569281 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18569246 TTTTTTGTCC
18569256 AAACGCCGCTAA
1 AAACGCCGCTAA
18569268 AAACGCCGCTAA
1 AAACGCCGCTAA
18569280 AA
1 AA
18569282 CCCTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:18569309 original size:3 final size:3
Alignment explanation
Indices: 18569301--18569365 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
18569291 GGTGTAGTGC
18569301 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
18569349 CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CT
18569366 ACTACTACTA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:18569370 original size:3 final size:3
Alignment explanation
Indices: 18569364--18569394 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
18569354 TCTTCTTCTT
18569364 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA C
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA C
18569395 CCATCTAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
CTA
Found at i:18569871 original size:29 final size:29
Alignment explanation
Indices: 18569755--18569863 Score: 141
Period size: 29 Copynumber: 3.8 Consensus size: 29
18569745 CATTAGTGAT
*
18569755 CAAAACATAATAAATTAAAGTTCAATAAC
1 CAAAACATAATAAATTAAAGTTCAATGAC
* *
18569784 CAAAACATAATAAATTAAAGTCCAATGAT
1 CAAAACATAATAAATTAAAGTTCAATGAC
* *
18569813 CAAAATGA-AATAAATTAAAGTTCAAAGAC
1 CAAAA-CATAATAAATTAAAGTTCAATGAC
18569842 CAAAACGA-AATAAATTAAAGTT
1 CAAAAC-ATAATAAATTAAAGTT
18569864 TAGTGACCTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
29 69 0.99
30 1 0.01
ACGTcount: A:0.58, C:0.12, G:0.07, T:0.23
Consensus pattern (29 bp):
CAAAACATAATAAATTAAAGTTCAATGAC
Found at i:18571768 original size:12 final size:13
Alignment explanation
Indices: 18571743--18571772 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
18571733 TGGGCTATAA
18571743 TTATTGCATTTAT
1 TTATTGCATTTAT
18571756 TTATTGC-TTTAT
1 TTATTGCATTTAT
18571768 TTATT
1 TTATT
18571773 CATGTATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (13 bp):
TTATTGCATTTAT
Found at i:18582884 original size:11 final size:10
Alignment explanation
Indices: 18582870--18582906 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
18582860 GAAAAACCAT
18582870 AAAAAAAGAA
1 AAAAAAAGAA
18582880 AAAAAAAGAA
1 AAAAAAAGAA
*
18582890 AAAAAAACAA
1 AAAAAAAGAA
18582900 CAAAAAA
1 -AAAAAA
18582907 CCAGCAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 19 0.76
11 6 0.24
ACGTcount: A:0.89, C:0.05, G:0.05, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:18598253 original size:6 final size:7
Alignment explanation
Indices: 18598236--18598265 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
18598226 AAAGTCGCCC
18598236 TTTTTTA
1 TTTTTTA
18598243 TTTTTTA
1 TTTTTTA
18598250 TTTTATTA
1 TTTT-TTA
18598258 TTTTTTA
1 TTTTTTA
18598265 T
1 T
18598266 ATTATGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:18598260 original size:15 final size:15
Alignment explanation
Indices: 18598236--18598276 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
18598226 AAAGTCGCCC
18598236 TTTT-TTATTTTTTA
1 TTTTATTATTTTTTA
18598250 TTTTATTATTTTTTA
1 TTTTATTATTTTTTA
*
18598265 TATTATGTATTT
1 TTTTAT-TATTT
18598277 AATATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 4 0.17
15 15 0.62
16 5 0.21
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (15 bp):
TTTTATTATTTTTTA
Found at i:18599405 original size:44 final size:44
Alignment explanation
Indices: 18599113--18600191 Score: 557
Period size: 44 Copynumber: 23.9 Consensus size: 44
18599103 GATTCATCGT
* * ** *
18599113 TTTAAT-TCGCTCCACTGCAACTTCAAGGAGATAGGATTAATAGC
1 TTTAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * *
18599157 TTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTGGTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * **
18599201 TTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
18599245 TTTAATATGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-T-G--TATC
* * *
18599294 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TGTATC
* * * * *
18599340 TTTAA-CTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTC
1 TTTAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
18599384 TTTAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGTTTATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG--TATC
* * * *
18599430 TTTAACCTGTTCCACTGCAGCTTCAGGGAGATAAGGTTTG-A--
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * * *
18599471 TATGATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-----TAT--C
* * **
18599522 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTATC
* * * * * * * *
18599567 TTCAGTCTGTTCCATTGTAGCTTCAGGGAGATAAGACTTGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * *
18599611 TTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * * *
18599652 TATGATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T----TGTAT--C
* * * * * *
18599703 TTCAATATGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
** * * * * * * *
18599748 TCCAGTCTGTTCTACTGCAGCTTCAAGGAGATAAGACTTGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * *
18599792 TTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * ** * *
18599833 TATGATTTGCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGAT-A-A---G--ATTTGTATC
* ** * * * *
18599884 TTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
* * * *
18599929 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * *
18599973 TTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * *
18600014 TATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT---T--TGTAT--C
* ** * * * *
18600065 TTCAATCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
* * * * * * **
18600110 TTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTAGTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
*
18600154 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
18600192 CGCCATGATG
Statistics
Matches: 773, Mismatches: 207, Indels: 110
0.71 0.19 0.10
Matches are distributed among these distances:
41 111 0.14
42 2 0.00
43 2 0.00
44 284 0.37
45 134 0.17
46 76 0.10
47 11 0.01
48 6 0.01
49 38 0.05
50 2 0.00
51 107 0.14
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
Found at i:18599406 original size:139 final size:134
Alignment explanation
Indices: 18599124--18600188 Score: 482
Period size: 137 Copynumber: 7.9 Consensus size: 134
18599114 TTAATTCGCT
* * ** * *
18599124 CCACTGCAACTTCAAGGAGATAGGA-TT-AATAGCTTCAATCTGCTCCACTGTAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
18599187 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
*
18599252 TGCT
131 TGCC
*
18599256 CCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAGG
1 CCACTGCAACTTCAGGGAGATAAGATTTGT---CTATCTTCAATCTGCTCCACTGCAACTTCAGG
* * * * * * *
18599321 GAGATAAGATTGGTTTATTTTTAACTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTT
63 GAGATAAGATTGG--TATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTT
*
18599386 TAATCTGCC
126 TAATATGCC
* * * * * *
18599395 CCACTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * * ** * * * * * *
18599460 ATAAGGTTTG-AT-AT-GATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGC
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG----G---TTTGTGGC
* **
18599522 TTTAATCTGTT
124 TTTAATATGCC
* ** * * * * *
18599533 CCACTGCAACTTCAGGGAAATAAGA-TTCACTATCTTCAGTCTGTTCCATTGTAGCTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * * *
18599597 ATAAGACTT-GTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGG-TT-T-GCTATGAT
66 ATAAGA-TTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAAT
* **
18599658 CTGTT
130 ATGCC
* * * * * * *
18599663 CTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGCTTCAATATGTTCCACTGCAACTTCA
1 CCACTGCAACTTCAGGGAGATAAGATTTG---TCTAT--CTTCAATCTGCTCCACTGCAACTTCA
* * * * ** * * * * ** **
18599728 GGAAAATAAGATTCGCTATCTCCAGTCTGTTCTACTGCAGCTTCAAGGAGATAAGACTTGTAACT
61 GGGAGATAAGATT-GGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCT
* ** *
18599793 TCAACCTGCT
125 TTAATATGCC
* * * * * **
18599803 CCATTGCAACTTCAGGGAGATAAGGTTTG-CTA---T-GATTTGCTCTACTGCAACTTCAAAGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * ** * * * * * **
18599863 ATAATATCTGCAATTTATAGCTTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTAT
66 ATAAGAT-TG----GTAT--CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TGG
* * * *
18599928 CTTCAGTCTGCT
123 CTTTAATATGCC
* * * *
18599940 CCACTGCAACTTCAGGGAGATAAGACTTG--TAGCTTCAACCTACTCCACTGCAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * * * * * * *
18600003 ATAAGGTT--T-GCTAT-GATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTTATAG
66 ATAAGATTGGTATCT-TCAACCTGCTCCACTGCAACTTCAGGGAGATAAG----G---TTTGTGG
* * ***
18600064 CTTCAATCTATT
123 CTTTAATATGCC
* * * * * * *
18600076 CCATTGCAACTTTAGGGAAATAAGATTCG-CTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * ** *
18600140 ATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
18600189 ATTCGCCATG
Statistics
Matches: 707, Mismatches: 172, Indels: 100
0.72 0.18 0.10
Matches are distributed among these distances:
130 83 0.12
131 28 0.04
132 25 0.04
133 5 0.01
134 6 0.01
135 3 0.00
136 137 0.19
137 181 0.26
138 43 0.06
139 85 0.12
140 111 0.16
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (134 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
TGCC
Found at i:18599416 original size:90 final size:89
Alignment explanation
Indices: 18599167--18600145 Score: 392
Period size: 92 Copynumber: 10.8 Consensus size: 89
18599157 TTCAATCTGC
* * * *
18599167 TCCACTGTAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * *** *
18599232 TAAGGTT-TGTGGCTTTAA-TATGC
66 TAAGATTGTTTATTTTTAACT-TGT
*
18599255 TCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGT-G----TCTTCAATCTGCTCCACTGCAACTTCAG
18599320 GGAGATAAGATTGGTTTATTTTTAACTTGT
61 GGAGATAAGATT-GTTTATTTTTAACTTGT
* * * * *
18599350 TCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTTTAATCTGCCCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
18599415 TAAGATTTGTTTATTTTTAACCTGT
66 TAAGA-TTGTTTATTTTTAACTTGT
* * * * * * * * * *
18599440 TCCACTGCAGCTTCAGGGAGATAAGGTTTG-AT-AT-GATTTGCTCTACTGTAACTTCAGAGATA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
18599502 TAAGATTTGTAATTTATAGCTTTAA-TCTGT
66 TAAGA-TTG---TTTAT--TTTTAACT-TGT
* ** * * * * * *
18599532 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGTTCCATTGTAGCTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATT-TGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * *
18599597 ATAAGACTTG--TAACTTCAACCTGC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * * * * *
18599621 TCCACTGCAACTTCTGAGAGATAAG-GTT-TG-CTAT-GATCTGTTCTACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* *
18599682 ATAAGATCTGAAATTTATAGCTTCAA-TATGT
65 ATAAGAT-TG---TTTAT--TTTTAACT-TGT
* * * * * * * * * *
18599713 TCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTCCAGTCTGTTCTACTGCAGCTTCAAGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * *
18599778 ATAAGACTTG--TAACTTCAACCTGC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * * **
18599802 TCCATTGCAACTTCAGGGAGATAAG-GTT-TG-CTAT-GATTTGCTCTACTGCAACTTCAAAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
18599863 ATAATATCTGCAATTTATAGCTTCAA-TCTAT
65 ATAAGAT-TG---TTTAT--TTTTAACT-TGT
* * * * * *
18599894 TCCAATACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * **
18599959 ATAAGACTTG--TAGCTTCAACCTAC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * *
18599983 TCCACTGCAACTTCAGGGAGATAAG-GTT-TG-CTAT-GATCTGCTCTACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
18600044 ATAAGATCAGTAATTTATAGCTTCAA-TCTAT
65 ATAAGAT---T-GTTTAT--TTTTAACT-TGT
* * * * * * * *
18600075 TCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
18600140 ATAAGA
65 ATAAGA
18600146 CTAGTGGCTT
Statistics
Matches: 681, Mismatches: 141, Indels: 130
0.72 0.15 0.14
Matches are distributed among these distances:
84 3 0.00
85 91 0.13
86 5 0.01
87 31 0.05
88 32 0.05
89 90 0.13
90 90 0.13
91 8 0.01
92 121 0.18
93 41 0.06
94 3 0.00
95 43 0.06
96 121 0.18
97 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (89 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
TAAGATTGTTTATTTTTAACTTGT
Found at i:18599547 original size:92 final size:91
Alignment explanation
Indices: 18599298--18600145 Score: 483
Period size: 92 Copynumber: 9.4 Consensus size: 91
18599288 CCTATCTTCA
* * * * * * * *
18599298 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-GTTTAT--TTTTAACTTGTTCCAGTGCA
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGCA
** * * *
18599359 ACTTCAGGGGGATAAGGTTTGTGTCTTTA
66 ACTTCAGGGAAATAAGG-TT-TG-ATATG
* * * * * *
18599388 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTG--TTTAT--TTTTAACCTGTTCCACTGCA
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGCA
* *
18599449 GCTTCAGGGAGATAAGGTTTGATATG
66 ACTTCAGGGAAATAAGGTTTGATATG
* * * *
18599475 ATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * *
18599540 AACTTCAGGGAAATAAGATTCACT-ATCTTC
65 AACTTCAGGGAAATAAGGTT---TGAT-ATG
* * * * * * *
18599570 AGTCTGTTCCATTGTAGCTTCAGGGAGATAAGACTTG----TA-A-CTTCAACCTGCTCCACTGC
1 A-TCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGC
* * * *
18599629 AACTTCTGAGAGATAAGGTTTGCTATG
65 AACTTCAGGGAAATAAGGTTTGATATG
* * **
18599656 ATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGCTTCAATATGTTCCACTGC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * * * *
18599721 AACTTCAGGAAAATAAGATTCGCTATCTCC
65 AACTTCAGGGAAATAAGGTTTG--ATAT-G
* * * * * *
18599751 AGTCTGTTCTACTGCAGCTTCA-AGGAGATAAGACTTG----TA-A-CTTCAACCTGCTCCATTG
1 A-TCTGCTCTACTGTAACTTCAGA-GAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTG
* *
18599809 CAACTTCAGGGAGATAAGGTTTGCTATG
64 CAACTTCAGGGAAATAAGGTTTGATATG
* * * * * * * * *
18599837 ATTTGCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTTATAGCTTCAATCTATTCCAATAC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * * *
18599902 AACTTCAGGGAAATAAGATTCGCTATCTTC
65 AACTTCAGGGAAATAAGGTTTG--AT-ATG
* * * * **
18599932 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG------TAGCTTCAACCTACTCCACTGC
1 A-TCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGC
* *
18599991 AACTTCAGGGAGATAAGGTTTGCTATG
65 AACTTCAGGGAAATAAGGTTTGATATG
** * * *
18600018 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTTATAGCTTCAATCTATTCCATTGC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * * * *
18600083 AACTTTAGGGAAATAAGATTCGCTATCTTC
65 AACTTCAGGGAAATAAGGTTTG--AT-ATG
*
18600113 AGTCTGCTCCACTGTAACTTCAGAGAGATAAGA
1 A-TCTGCTCTACTGTAACTTCAGAGAGATAAGA
18600146 CTAGTGGCTT
Statistics
Matches: 588, Mismatches: 123, Indels: 88
0.74 0.15 0.11
Matches are distributed among these distances:
85 85 0.14
86 7 0.01
87 36 0.06
88 2 0.00
89 104 0.18
90 80 0.14
91 9 0.02
92 136 0.23
94 6 0.01
95 9 0.02
96 114 0.19
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (91 bp):
ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGCA
ACTTCAGGGAAATAAGGTTTGATATG
Found at i:18599580 original size:227 final size:228
Alignment explanation
Indices: 18599123--18599650 Score: 548
Period size: 227 Copynumber: 2.3 Consensus size: 228
18599113 TTTAATTCGC
* * * * * *
18599123 TCCACTGCAACTTCAAGGAGATAGGA-TTAATAGCTTCAATCTGCTCCACTGTAACTTCAGGGAG
1 TCCAGTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
18599187 ATAAGA-TTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAAT
65 ATAAGATTTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAAT
* * *
18599251 ATGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACT
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTATCTTCAATCTGCTCCACTGCAACT
* *** * *
18599316 TCAGGGAGATAAGATTGGTTTATTTTTAACTTGT
195 TCAGGGAAATAAGATTGCACTATCTTCAACTTGT
* ** ** * *
18599350 TCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTTTAATCTGCCCCACTGCAACTTCAGGGAGA
1 TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * * * * *
18599415 TAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAGATAAGG-TT-T-GATATGAT
66 TAAGATTTG-GTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAAT
* * * * ** * *
18599477 TTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAA
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTAT--CTTCAATCTGCTCCACTGCAA
*
18599542 CTTCAGGGAAATAAGATT-CACTATCTTC-AGTCTGT
193 CTTCAGGGAAATAAGATTGCACTATCTTCAACT-TGT
* * * * * *
18599577 TCCATTGTAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGA
1 TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
18599642 TAAGGTTTG
66 TAAGATTTG
18599651 CTATGATCTG
Statistics
Matches: 244, Mismatches: 51, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
226 40 0.16
227 125 0.51
228 43 0.18
229 36 0.15
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (228 bp):
TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
TAAGATTTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAATA
TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTATCTTCAATCTGCTCCACTGCAACTT
CAGGGAAATAAGATTGCACTATCTTCAACTTGT
Found at i:18599648 original size:181 final size:181
Alignment explanation
Indices: 18599152--18600188 Score: 1190
Period size: 181 Copynumber: 5.7 Consensus size: 181
18599142 GATAGGATTA
** * * * **
18599152 ATAGCTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATT-GGTATCTTCAACCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
** ** * ** *
18599216 TGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATATGCTCCATTGCAACTTCAGGGAGATAAGA
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG-
* * * * * *
18599281 TTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG--GTTT
130 GTT-T-G-CTA---T-GATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * ** * * * * * *
18599337 AT--TTTTAA-CTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTG-TGTCTTTAATCTGCCCCA
1 ATAGCTTCAATC-TATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCA
* ** * * *
18599398 CTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAGATA
65 CTGCAACTTCAGGGAGATAAGACTTG--TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
18599463 AGGTTTGATATGATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTT
128 AGGTTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * *
18599517 ATAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGTTCCAT
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * * *
18599582 TGTAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* *
18599647 TTTGCTATGATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * * *
18599698 ATAGCTTCAATATGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTCCAGTCTGTTCTAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * *
18599763 TGCAGCTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* * * * *
18599828 TTTGCTATGATTTGCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* *
18599879 ATAGCTTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* *
18599944 TGCAACTTCAGGGAGATAAGACTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
*
18600009 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* *
18600060 ATAGCTTCAATCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * * ** *
18600125 TGTAACTTCAGAGAGATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
18600189 ATTCGCCATG
Statistics
Matches: 737, Mismatches: 104, Indels: 26
0.85 0.12 0.03
Matches are distributed among these distances:
177 28 0.04
178 3 0.00
180 5 0.01
181 525 0.71
182 34 0.05
183 106 0.14
184 3 0.00
185 33 0.04
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (181 bp):
ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
Found at i:18599826 original size:89 final size:88
Alignment explanation
Indices: 18599121--18600194 Score: 516
Period size: 89 Copynumber: 11.9 Consensus size: 88
18599111 GTTTTAATTC
* * * * * *
18599121 GCTCCACTGCAACTTCAAGGAGATAGGA-TTAATAGCTTCAATCTGCTCCACTGTAACTTCAGGG
1 GCTCTACTGTAACTTCAAGGAGATAAGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * **
18599185 AGATAAGATT-GGTATCTTCAACCT
65 AAATAAGATTCGCTATC-TCAGTCT
* * * ** ** * * *
18599209 GCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATATGCTCCATTGCAACTTCAGGGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * *
18599274 GATAAGATTTGTAGCCTATCTTCAATCT
66 AATAAGA--T-TCG-CTATC-TCAGTCT
* * * ** * * *
18599302 GCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTTTATTTTTAA-CTTGTTCCAGTGCAACTTCA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTT-G--TAACTTCAATC-TGCTCCACTGCAACTTCA
** * * * * *
18599365 GGGGGATAAGGTTTG-TGTCTTTAATCT
62 GGGAAATAAGATTCGCTATC-TCAGTCT
* * * * * ** * * * *
18599392 GCCCCACTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGG
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTG--TAACTTCAATCTGCTCCACTGCAACTTCAGG
* * * * * *
18599457 GAGATAAGGTTTG--ATATGA-TTT
64 GAAATAAGATTCGCTATCTCAGTCT
* * * *
18599479 GCTCTACTGTAACTTC-AGAGATATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAAC
1 GCTCTACTGTAACTTCAAG-GAGATAAGACTTG-----TA-A-CTTCAATCTGCTCCACTGCAAC
*
18599543 TTCAGGGAAATAAGATTCACTATCTTCAGTCT
58 TTCAGGGAAATAAGATTCGCTATC-TCAGTCT
* * * * * * * *
18599575 GTTCCATTGTAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * * *
18599640 GATAAGGTTTGCTA--TGA-TCT
66 AATAAGATTCGCTATCTCAGTCT
* * * *
18599660 GTTCTACTGTAACTTC-AGAGAGATAAGATCTGAAATTTATAGCTTCAATATGTTCCACTGCAAC
1 GCTCTACTGTAACTTCAAG-GAGATAAGA-CT----TGTA-A-CTTCAATCTGCTCCACTGCAAC
*
18599724 TTCAGGAAAATAAGATTCGCTATCTCCAGTCT
58 TTCAGGGAAATAAGATTCGCTATCT-CAGTCT
* * * * *
18599756 GTTCTACTGCAGCTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * * * *
18599821 GATAAGGTTTGCTA--TGA-TTT
66 AATAAGATTCGCTATCTCAGTCT
* * * * ** * *
18599841 GCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTTATAGCTTCAATCTATTCCAATACAACT
1 GCTCTACTGTAACTTCAAGGAGATAAGA-CT----TGTA-A-CTTCAATCTGCTCCACTGCAACT
18599906 TCAGGGAAATAAGATTCGCTATCTTCAGTCT
59 TCAGGGAAATAAGATTCGCTATC-TCAGTCT
* * * * * *
18599937 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * * *
18600002 GATAAGGTTTGCTA--TGA-TCT
66 AATAAGATTCGCTATCTCAGTCT
* ** *
18600022 GCTCTACTGTAACTTC-AGAGAGATAAGATCAGTAATTTATAGCTTCAATCTATTCCATTGCAAC
1 GCTCTACTGTAACTTCAAG-GAGATAAGA-C--T--TGTA-A-CTTCAATCTGCTCCACTGCAAC
*
18600086 TTTAGGGAAATAAGATTCGCTATCTTCAGTCT
58 TTCAGGGAAATAAGATTCGCTATC-TCAGTCT
* * **
18600118 GCTCCACTGTAACTTC-AGAGAGATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGG
1 GCTCTACTGTAACTTCAAG-GAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
*
18600182 AGATAAGATTCGC
65 AAATAAGATTCGC
18600195 CATGATGACT
Statistics
Matches: 783, Mismatches: 144, Indels: 117
0.75 0.14 0.11
Matches are distributed among these distances:
84 2 0.00
85 77 0.10
86 11 0.01
87 28 0.04
88 63 0.08
89 148 0.19
90 95 0.12
91 15 0.02
92 147 0.19
93 41 0.05
94 3 0.00
95 43 0.05
96 107 0.14
97 3 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (88 bp):
GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
AATAAGATTCGCTATCTCAGTCT
Found at i:18604574 original size:50 final size:50
Alignment explanation
Indices: 18604466--18604704 Score: 248
Period size: 50 Copynumber: 4.7 Consensus size: 50
18604456 ATTTGGGTAA
*
18604466 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGGTTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGA-G--ATG
* * *
18604522 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACTGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* ** * * *
18604572 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* * * * *
18604622 AGA-ACTCCCATGTAAGACCATATCTGGGACATGACATTGGCAGT-ACAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* *
18604671 AAACATCCCATGTAAGACCATGTCTGGGACATGG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGG
18604705 TTTTGGCATA
Statistics
Matches: 157, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
49 32 0.20
50 82 0.52
52 1 0.01
53 3 0.02
55 1 0.01
56 38 0.24
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
Found at i:18606035 original size:12 final size:12
Alignment explanation
Indices: 18606005--18606062 Score: 62
Period size: 12 Copynumber: 4.6 Consensus size: 12
18605995 AGTATAAAAT
*
18606005 AATAATAATAAC
1 AATAAAAATAAC
*
18606017 AAATAAAAGTAAC
1 -AATAAAAATAAC
*
18606030 AATAAAAAAATAAA
1 AAT--AAAAATAAC
18606044 AATAAAAATAAC
1 AATAAAAATAAC
18606056 AATAAAA
1 AATAAAA
18606063 GAGTAATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 18 0.47
13 10 0.26
14 10 0.26
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (12 bp):
AATAAAAATAAC
Found at i:18606048 original size:26 final size:27
Alignment explanation
Indices: 18605993--18606062 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
18605983 AGAAAACATG
* *
18605993 AAAGTATAAAATAATAATAATAACAAATA
1 AAAGTA-ACAATAA-AAAAATAACAAATA
18606022 AAAGTAACAATAAAAAAATAA-AAATA
1 AAAGTAACAATAAAAAAATAACAAATA
*
18606048 AAAATAACAATAAAA
1 AAAGTAACAATAAAA
18606063 GAGTAATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.50
27 7 0.18
28 6 0.16
29 6 0.16
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.19
Consensus pattern (27 bp):
AAAGTAACAATAAAAAAATAACAAATA
Found at i:18607637 original size:23 final size:24
Alignment explanation
Indices: 18607582--18607680 Score: 89
Period size: 23 Copynumber: 4.3 Consensus size: 24
18607572 AGTGTTATTG
* * *
18607582 ATCAGTGGCAGCTTCAGTTACATT
1 ATCAGTGGTAGCTTCGGCTACATT
** *
18607606 -TCAACGGTAGCTACGGCTACATT
1 ATCAGTGGTAGCTTCGGCTACATT
**
18607629 A-CAGTGGTAGCTTCAACTACA-T
1 ATCAGTGGTAGCTTCGGCTACATT
*
18607651 ATCAGTGGTAGCTTTGGCTACA-T
1 ATCAGTGGTAGCTTCGGCTACATT
18607674 ATCAGTG
1 ATCAGTG
18607681 TGACACTTAT
Statistics
Matches: 59, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
22 2 0.03
23 57 0.97
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATCAGTGGTAGCTTCGGCTACATT
Found at i:18607680 original size:46 final size:46
Alignment explanation
Indices: 18607582--18607680 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 46
18607572 AGTGTTATTG
** *
18607582 ATCAGTGGCAGCTTCAGTTACATTTCAACGGTAGCTACGGCTACAT
1 ATCAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
* ** **
18607628 -TACAGTGGTAGCTTCAACTACATATCAGTGGTAGCTTTGGCTACAT
1 AT-CAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
18607674 ATCAGTG
1 ATCAGTG
18607681 TGACACTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.02
46 41 0.95
47 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (46 bp):
ATCAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
Found at i:18607930 original size:23 final size:25
Alignment explanation
Indices: 18607884--18607930 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
18607874 GAAATTGCTA
* *
18607884 AGAAATGTTTGATTAGTTATATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
18607909 AGAAATG-TTAATT-GTTAAATGA
1 AGAAATGTTTAATTAGTTAAATGA
18607931 ATATTTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (25 bp):
AGAAATGTTTAATTAGTTAAATGAG
Found at i:18615225 original size:25 final size:25
Alignment explanation
Indices: 18615194--18615241 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
18615184 TAAGCTATAT
18615194 AACGGGAAGCTCAT-GTGAGCCATGC
1 AACGGGAAGCTCATAG-GAGCCATGC
18615219 AACGGGAAGCTCATAGGAGCCAT
1 AACGGGAAGCTCATAGGAGCCAT
18615242 AATCAAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (25 bp):
AACGGGAAGCTCATAGGAGCCATGC
Found at i:18615294 original size:49 final size:49
Alignment explanation
Indices: 18615199--18615303 Score: 124
Period size: 49 Copynumber: 2.1 Consensus size: 49
18615189 TATATAACGG
* * *
18615199 GAAGCTCATGTGAGCCATGCAACGGGAAGCTCATAGGAGCCATAATCAA
1 GAAGCTCATGCGAGCCAAGCAACGGGAAGCTCATAAGAGCCATAATCAA
* **
18615248 GAAGCTCATGCGAGCCAAG-AACGGGTAGCTC-TGAAGAGCCATTAATCGG
1 GAAGCTCATGCGAGCCAAGCAACGGGAAGCTCAT-AAGAGCCA-TAATCAA
18615297 GAAGCTC
1 GAAGCTC
18615304 CGAATAGTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 1 0.02
48 18 0.38
49 29 0.60
ACGTcount: A:0.32, C:0.23, G:0.29, T:0.16
Consensus pattern (49 bp):
GAAGCTCATGCGAGCCAAGCAACGGGAAGCTCATAAGAGCCATAATCAA
Found at i:18615302 original size:25 final size:25
Alignment explanation
Indices: 18615269--18615413 Score: 104
Period size: 25 Copynumber: 5.8 Consensus size: 25
18615259 GAGCCAAGAA
*
18615269 CGGGTAGCTCTGAAGAGCCATTAAT
1 CGGGAAGCTCTGAAGAGCCATTAAT
* * *
18615294 CGGGAAGCTCCGAATAGTCA-TATAT
1 CGGGAAGCTCTGAAGAGCCATTA-AT
* *
18615319 AGGGAAG-T-TCAAGCGAGCC-TT-AT
1 CGGGAAGCTCTGAA--GAGCCATTAAT
18615342 CGGGAAGCTCT-AGAGAGCCATTAAT
1 CGGGAAGCTCTGA-AGAGCCATTAAT
* * *
18615367 CAGGAAGCTCATAAAGAGCCTTTAAT
1 CGGGAAGCTC-TGAAGAGCCATTAAT
* *
18615393 CGAGAAGCTCCGAAGAGCCAT
1 CGGGAAGCTCTGAAGAGCCAT
18615414 ATATCGAGAC
Statistics
Matches: 92, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
23 15 0.16
24 7 0.08
25 49 0.53
26 20 0.22
27 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
CGGGAAGCTCTGAAGAGCCATTAAT
Found at i:18615391 original size:26 final size:24
Alignment explanation
Indices: 18615344--18615413 Score: 77
Period size: 26 Copynumber: 2.8 Consensus size: 24
18615334 AGCCTTATCG
*
18615344 GGAAGCTCTAGAGAGCCATTAATC
1 GGAAGCTCTAAAGAGCCATTAATC
*
18615368 AGGAAGCTCATAAAGAGCCTTTAATC
1 -GGAAGCTC-TAAAGAGCCATTAATC
**
18615394 GAGAAGCTCCGAAGAGCCAT
1 G-GAAGCTCTAAAGAGCCAT
18615414 ATATCGAGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 17 0.45
26 21 0.55
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (24 bp):
GGAAGCTCTAAAGAGCCATTAATC
Found at i:18615433 original size:25 final size:25
Alignment explanation
Indices: 18615333--18615435 Score: 74
Period size: 25 Copynumber: 4.2 Consensus size: 25
18615323 AAGTTCAAGC
*
18615333 GAGCCT-T-ATCGGGAAGCTC-TAGA
1 GAGCCTATAATCGAGAAGCTCATA-A
18615356 GAGCC-ATTAATC-AGGAAGCTCATAAA
1 GAGCCTA-TAATCGA-GAAGCTCAT-AA
* **
18615382 GAGCCTTTAATCGAGAAGCTCCGAA
1 GAGCCTATAATCGAGAAGCTCATAA
*
18615407 GAGCC-ATATATCGAGACGCTCATAA
1 GAGCCTATA-ATCGAGAAGCTCATAA
18615432 GAGC
1 GAGC
18615436 TGCAGTGTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
23 5 0.08
24 3 0.05
25 34 0.54
26 19 0.30
27 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (25 bp):
GAGCCTATAATCGAGAAGCTCATAA
Found at i:18617557 original size:25 final size:25
Alignment explanation
Indices: 18617519--18617599 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 25
18617509 AAGTTTAAGC
18617519 GAGCCA-T-ATTAGGAAGCTCCAAA
1 GAGCCATTAATTAGGAAGCTCCAAA
*
18617542 GAGCCATTAATTAGGAAGCTCACATCA
1 GAGCCATTAATTAGGAAGCTC-CA-AA
* ** *
18617569 -AGCCTTTAATCGGGAAGCTCCGAA
1 GAGCCATTAATTAGGAAGCTCCAAA
18617593 GAGCCAT
1 GAGCCAT
18617600 ATATCGGGAC
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
23 6 0.13
24 2 0.04
25 18 0.39
26 19 0.41
27 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (25 bp):
GAGCCATTAATTAGGAAGCTCCAAA
Found at i:18635459 original size:22 final size:21
Alignment explanation
Indices: 18635426--18635476 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
18635416 TAATATTTCA
18635426 AAAGAAAA-AAAATTAG-TAAT
1 AAAGAAAATAAAA-TAGATAAT
*
18635446 CAAGCAAAATAAAATAGATAAT
1 AAAG-AAAATAAAATAGATAAT
18635468 AAAGAAAAT
1 AAAGAAAAT
18635477 GTTACTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 11 0.42
ACGTcount: A:0.69, C:0.04, G:0.10, T:0.18
Consensus pattern (21 bp):
AAAGAAAATAAAATAGATAAT
Found at i:18637275 original size:12 final size:13
Alignment explanation
Indices: 18637246--18637275 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18637236 CAATTTGACA
*
18637246 AAAAAATTTTGCT
1 AAAAAATTTTACT
18637259 AAAAAATTTTACT
1 AAAAAATTTTACT
18637272 AAAA
1 AAAA
18637276 TTATGATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (13 bp):
AAAAAATTTTACT
Found at i:18637977 original size:12 final size:12
Alignment explanation
Indices: 18637956--18637990 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
18637946 CACACGGCCA
*
18637956 TGTCCCTGCCCG
1 TGTCCTTGCCCG
18637968 TGTCCTTGCCCG
1 TGTCCTTGCCCG
18637980 TGTCCTTGCCC
1 TGTCCTTGCCC
18637991 ATGTAACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.46, G:0.23, T:0.31
Consensus pattern (12 bp):
TGTCCTTGCCCG
Found at i:18638047 original size:66 final size:66
Alignment explanation
Indices: 18637923--18638048 Score: 155
Period size: 66 Copynumber: 1.9 Consensus size: 66
18637913 GTGTCTCAAG
* * *
18637923 CCATGCAACAATCGAAATAGGGACACACGGCCATGTCCCTGCCCGTGTCCTTGCCCGTGTCCTTG
1 CCATGCAACAATCGAAATAGAGACACACGGCCATGTCCCAGCCCGTGTCCTTGACCGTGTCCTTG
18637988 C
66 C
* * * * * *
18637989 CCATGTAACATTCGAACTAGAGACACATGGCCGTGTCCCAGCTCGTGT-CTCTGACCGTGT
1 CCATGCAACAATCGAAATAGAGACACACGGCCATGTCCCAGCCCGTGTCCT-TGACCGTGT
18638049 AACATTCTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 2 0.04
66 48 0.96
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.23
Consensus pattern (66 bp):
CCATGCAACAATCGAAATAGAGACACACGGCCATGTCCCAGCCCGTGTCCTTGACCGTGTCCTTG
C
Found at i:18638050 original size:54 final size:54
Alignment explanation
Indices: 18637965--18638148 Score: 255
Period size: 54 Copynumber: 3.4 Consensus size: 54
18637955 ATGTCCCTGC
** * *
18637965 CCGTGTCCTTGCCCGTGTC-CTTGCCCATGTAACATTCGAACTAGAGACACATGG
1 CCGTGTCCCAGCCCGTGTCTC-TGACCATGTAACATTCGAACTAGAGACACACGG
* * *
18638019 CCGTGTCCCAGCTCGTGTCTCTGACCGTGTAACATTCTAACTAGAGACACACGG
1 CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
* * *
18638073 TCGTGTCCCAGCCCGTGTCTCTGCCCATGTAACATTTGAACTAGAGACACACGG
1 CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
18638127 CCGTGT-CCAGCCCGTGTCTCTG
1 CCGTGTCCCAGCCCGTGTCTCTG
18638149 CTCGTCTAAC
Statistics
Matches: 115, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
53 16 0.14
54 98 0.85
55 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.25
Consensus pattern (54 bp):
CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
Found at i:18638197 original size:108 final size:108
Alignment explanation
Indices: 18637977--18638198 Score: 265
Period size: 108 Copynumber: 2.1 Consensus size: 108
18637967 GTGTCCTTGC
* *
18637977 CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACATGGCCGTGTCCCAGCTCGTGTCTCTG
1 CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACACGGCCGTGTCCCAGCCCGTGTCTCTG
* * * *
18638042 ACCGTGTAACATTCTAACTAGAGACACACGGTCGTGTCCCAGC
66 ACCGTCTAACATACTAACTAGAGACACACGGTCGTGTCACAGA
*
18638085 CCGTGT-CTCTGCCCATGTAACATTTGAACTAGAGACACACGGCCGTGT-CCAGCCCGTGTCTCT
1 CCGTGTCCT-TGCCCATGTAACATTCGAACTAGAGACACACGGCCGTGTCCCAGCCCGTGTCTCT
* * * *
18638148 G-CTCGTCTAAC-TCACTAAGTAGGGTCACATGG-CTGTGTCACACGA
65 GAC-CGTCTAACAT-ACTAACTAGAGACACACGGTC-GTGTCACA-GA
18638193 CCGTGT
1 CCGTGT
18638199 GCTAGGTCGT
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
106 3 0.03
107 45 0.46
108 50 0.51
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (108 bp):
CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACACGGCCGTGTCCCAGCCCGTGTCTCTG
ACCGTCTAACATACTAACTAGAGACACACGGTCGTGTCACAGA
Found at i:18640126 original size:20 final size:20
Alignment explanation
Indices: 18640091--18640139 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
18640081 ATCATGGTCT
*
18640091 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTTTTTACTTAC
18640110 TCT-CTTACTTTTTTACTTAC
1 T-TGCTTACTTTTTTACTTAC
18640130 TTGCTTACTT
1 TTGCTTACTT
18640140 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.04, T:0.59
Consensus pattern (20 bp):
TTGCTTACTTTTTTACTTAC
Found at i:18640465 original size:50 final size:49
Alignment explanation
Indices: 18640341--18640485 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 49
18640331 GATAATAACA
* *
18640341 TGCCAAAGCCATGTCTCAGACATGGTCTTACATGGGATGTT-TCATGTAC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATAC
* * * *
18640390 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATAT-C
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAC
* **
18640438 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 --TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATA
18640486 AACTCAATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.05
49 37 0.46
50 40 0.49
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (49 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAC
Found at i:18645125 original size:39 final size:40
Alignment explanation
Indices: 18645025--18645130 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
18645015 TAGACTGAAC
* * *
18645025 ACACCAAACAGAAGCTCATAAAAGTTGGTCCAACTGAAAT
1 ACACCAAACAGAAGCTCATAAGAGCTGGTCCAACCGAAAT
*
18645065 ACACCAAACAGAAGCTCATAAGAGCTGGTCCACCCG-AA-
1 ACACCAAACAGAAGCTCATAAGAGCTGGTCCAACCGAAAT
**
18645103 ACACGTGAACAGAAGCTCATAAGAGCTG
1 ACAC-CAAACAGAAGCTCATAAGAGCTG
18645131 AACAGAAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
38 4 0.07
39 23 0.39
40 32 0.54
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.14
Consensus pattern (40 bp):
ACACCAAACAGAAGCTCATAAGAGCTGGTCCAACCGAAAT
Found at i:18645134 original size:21 final size:21
Alignment explanation
Indices: 18645108--18645152 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
18645098 CCGAAACACG
*
18645108 TGAACAGAAGCTCATAAGAGC
1 TGAACAGAAGATCATAAGAGC
18645129 TGAACAGAAGATCATAAGAGC
1 TGAACAGAAGATCATAAGAGC
18645150 TGA
1 TGA
18645153 TCCACCCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (21 bp):
TGAACAGAAGATCATAAGAGC
Found at i:18659909 original size:13 final size:13
Alignment explanation
Indices: 18659891--18659915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18659881 AAAATCTGAT
18659891 TTCAAGTGTATTC
1 TTCAAGTGTATTC
18659904 TTCAAGTGTATT
1 TTCAAGTGTATT
18659916 GTGTATAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCAAGTGTATTC
Found at i:18665192 original size:19 final size:20
Alignment explanation
Indices: 18665170--18665207 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
18665160 CACAATTTAT
*
18665170 CTTAAACATATTA-AAAGCA
1 CTTAAACACATTATAAAGCA
*
18665189 CTTATACACATTATAAAGC
1 CTTAAACACATTATAAAGC
18665208 TTACAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (20 bp):
CTTAAACACATTATAAAGCA
Found at i:18666973 original size:19 final size:19
Alignment explanation
Indices: 18666949--18667011 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
18666939 ATATATATAT
18666949 TAATAAATGATGAATTTAA
1 TAATAAATGATGAATTTAA
* *
18666968 TAATAATATG-TCAAGTTAAA
1 TAATAA-ATGATGAA-TTTAA
18666988 TTTAAT-AAT-ATGAATTTAA
1 --TAATAAATGATGAATTTAA
18667007 TAATA
1 TAATA
18667012 GTAATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
17 4 0.12
19 13 0.38
20 12 0.35
21 1 0.03
22 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (19 bp):
TAATAAATGATGAATTTAA
Found at i:18668766 original size:45 final size:44
Alignment explanation
Indices: 18668717--18668801 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
18668707 ATTTGCTATT
*
18668717 CTCAGTCTACCCCACTGCAACTTCAAGGGGGATAAGACCTGTTTA
1 CTCAGTCTACCCCACTGCAACTTC-AGGGAGATAAGACCTGTTTA
* * **
18668762 CTCAGTCTGCTCTGCTGCAACTTCAGGGAGATAAGACCTG
1 CTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGACCTG
18668802 ATGCGATCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 15 0.43
45 20 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (44 bp):
CTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGACCTGTTTA
Found at i:18668872 original size:44 final size:44
Alignment explanation
Indices: 18668728--18669398 Score: 313
Period size: 44 Copynumber: 15.5 Consensus size: 44
18668718 TCAGTCTACC
* * * *
18668728 CCACTGCAACTTCAAGGGGGATAAGACCTGTTTAC-TCAGTCTGCT
1 CCACTGCAACTTC-AGGGAGATAAGATCT-ATTACTTCAATCTGCT
** * * * * **
18668773 CTGCTGCAACTTCAGGGAGATAAGA-C-CTGA-TGCGATCCACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
18668814 CTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * **
18668858 CCACTACAACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCAATCTGCT
* *** * *
18668902 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCGATCTGCC
1 CCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCAATCTGCT
* * * * * * * **
18668947 CCATTGTAACCTCA-GGAGGATAAGA-C--CTGCTGCGATCCACT
1 CCACTGCAACTTCAGGGA-GATAAGATCTATTACTTCAATCTGCT
* * * * *
18668988 CTACTGCAACTTCAGAGAGATAAGATTTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * ** *
18669032 CTACTACAACTTCAGGGAGAT-AGTAT-TATCGGCTTCAATCTACT
1 CCACTGCAACTTCAGGGAGATAAG-ATCTAT-TACTTCAATCTGCT
* * * * *** * * *
18669076 CCACTGTAAGTTTAGGGAGATAAGATTTGCCATCTTCGATCTACC
1 CCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCAATCTGCT
* * * * * * *
18669121 CCACTGCAACCTCAGGGGGATAATA-C--TTGCTACGATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
18669162 CTACTGCAACTTCAGAGAGGTAAGATCTATTACTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* **
18669206 CCACTACAACTTCAGGGAGATAAGAT-TATCGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCAATCTGCT
* ** * **
18669250 -CACTACTGCTT-AGGGAGATAAGATCTGCTT-CTTCGGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCT-ATTACTTCAATCTGCT
* * * * * * *
18669292 CTACTGTAACCTCAGGGAGATAAGATC--TGA-TGCGATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
18669333 CTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* *
18669377 CCACTACATCTTCAGGGAGATA
1 CCACTGCAACTTCAGGGAGATA
18669399 GGATTTGTGG
Statistics
Matches: 464, Mismatches: 133, Indels: 59
0.71 0.20 0.09
Matches are distributed among these distances:
41 117 0.25
42 28 0.06
43 31 0.07
44 216 0.47
45 72 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
Found at i:18668971 original size:174 final size:172
Alignment explanation
Indices: 18668784--18669420 Score: 911
Period size: 174 Copynumber: 3.7 Consensus size: 172
18668774 TGCTGCAACT
18668784 TCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
1 TCAGGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
18668849 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
*
18668914 CAGGGAGATAAGATTTGCCATCTTCGATCTGCCCCATTGTAACC
130 -AGGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
* *
18668958 TCAGGAGGATAAGACCTGCTGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATTTATTACTT
1 TCAGG-GGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * * * *
18669023 TAATCCGCTCTACTACAACTTCAGGGAGATAGTATTATCGGCTTCAATCTACTCCACTGTAAGTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAA-CT
* *
18669088 TAGGGAGATAAGATTTGCCATCTTCGATCTACCCCACTGCAACC
129 TAGGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
* * * * * *
18669132 TCAGGGGGATAATACTTGCTACGATCTACTCTACTGCAACTTCAGAGAGGTAAGATCTATTACTT
1 TCA-GGGGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * * **
18669197 TAATCTGCTCCACTACAACTTCAGGGAGATAAGATTATCGGCTTCAATCTGCT-CACTACTGCTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
* * * * *
18669261 AGGGAGATAAGATCTG-CTTCTTCGGTCTGCTCTACTGTAACC
130 AGGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
* *
18669303 TCAGGGAGATAAGATCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
1 TCAGGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * *
18669368 TAATCCGCTCCACTACATCTTCAGGGAGATAGGATT-TGTGGCTTAAATCTGCT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAT-CGGCTTCAATCTGCT
18669421 TCCTTACTCT
Statistics
Matches: 414, Mismatches: 44, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
170 4 0.01
171 121 0.29
172 17 0.04
173 4 0.01
174 263 0.64
175 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (172 bp):
TCAGGGGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTT
AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTTA
GGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
Found at i:18669008 original size:86 final size:85
Alignment explanation
Indices: 18668776--18669358 Score: 287
Period size: 86 Copynumber: 6.7 Consensus size: 85
18668766 GTCTGCTCTG
* * * * * *
18668776 CTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGG-GATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATT
*** ** * *
18668841 TATTA-CTTTAATCCGCTCCA
65 TGCCATCTTCGATCTGCCCCA
* * * * * * * * *
18668861 CTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
1 CTGCAACCTCAGGG-GATA--A-TACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAG
18668926 ATTTGCCATCTTCGATCTGCCCCA
62 ATTTGCCATCTTCGATCTGCCCCA
* * * * *
18668950 TTGTAACCTCAGGAGGATAAGACCTGCTGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATT
1 CTGCAACCTCAGG-GGATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATT
*** ** * * *
18669015 TATTA-CTTTAATCCGCTCTA
65 TGCCATCTTCGATCTGCCCCA
* * * * * * * * * * *
18669035 CTACAACTTCAGGGAGATAGTATTATCGGCTTCAATCTACTCCACTGTAAGTTTAGGGAGATAAG
1 CTGCAACCTCAGGG-GATA--A-TACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAG
*
18669100 ATTTGCCATCTTCGATCTACCCCA
62 ATTTGCCATCTTCGATCTGCCCCA
* * *
18669124 CTGCAACCTCAGGGGGATAATACTTGCTACGATCTACTCTACTGCAACTTCAGAGAGGTAAGATC
1 CTGCAACCTCA-GGGGATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATT
*** ** *
18669189 TATTA-CTTTAATCTGCTCCA
65 TGCCATCTTCGATCTGCCCCA
* * * * * * * * ** *
18669209 CTACAACTTCAGGGAGATAAGATTATCGGCTTCAATCTGCTC-ACTACTGCTT-AGGGAGATAAG
1 CTGCAACCTCAGGG-GAT-A-A-TACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAG
* * * * *
18669272 ATCTG-CTTCTTCGGTCTGCTCTA
62 ATTTGCCATCTTCGATCTGCCCCA
* * * * *
18669295 CTGTAACCTCAGGGAGATAAGATCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGAT
1 CTGCAACCTCAGGG-GATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGAT
18669359 CTATTACTTT
Statistics
Matches: 362, Mismatches: 118, Indels: 36
0.70 0.23 0.07
Matches are distributed among these distances:
83 13 0.04
84 12 0.03
85 77 0.21
86 113 0.31
87 12 0.03
88 85 0.23
89 46 0.13
90 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (85 bp):
CTGCAACCTCAGGGGATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATTT
GCCATCTTCGATCTGCCCCA
Found at i:18669539 original size:129 final size:129
Alignment explanation
Indices: 18669389--18669793 Score: 666
Period size: 129 Copynumber: 3.1 Consensus size: 129
18669379 ACTACATCTT
* * * **
18669389 CAGGGAGATAGGATTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTTACCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
*
18669454 GATCTGCTCTGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
*
18669518 TAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
18669583 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGAAATTTCCCAACCTATTCCACTGTTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
* *
18669647 CAGGGATATAGGACTTGTGGCTTAAATTTGATTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* * * *
18669712 GATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGTACTTTCCCAACCTATTCCACTACTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
*
18669776 CAAGGATATAGGACTTGT
1 CAGGGATATAGGACTTGT
18669794 AATCTTCAAC
Statistics
Matches: 257, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 257 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (129 bp):
CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
Found at i:18669806 original size:44 final size:44
Alignment explanation
Indices: 18669756--18670051 Score: 362
Period size: 44 Copynumber: 6.7 Consensus size: 44
18669746 TGTACTTTCC
** * *
18669756 CAACCTATTCCACTACTGACCAAGGA-TATAGGACTTGTAATCTT
1 CAACCTATTCCACTACTGGTCAGGGAGT-TAGGACTTGCAATCTT
* * * *
18669800 CAACCTATTCCATTGCTGGTTAGGGAGTTAGGATTTGCAATCTT
1 CAACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATCTT
*
18669844 CTACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATCTT
*
18669888 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATCTT
* * * *
18669932 CTACCTATTCCTCTACTGGTCAGGGAGATAGGACTTACAATCTT
1 CAACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATCTT
* ** * *
18669976 CAACCTATTCCACTGCTGACCAGGGA-TATAGGACCTACAATCTT
1 CAACCTATTCCACTACTGGTCAGGGAGT-TAGGACTTGCAATCTT
* * *
18670020 CAACCTATTCCACTGCTGTTCAGGGAGCTAGG
1 CAACCTATTCCACTACTGGTCAGGGAGTTAGG
18670052 TTTTGTGGTT
Statistics
Matches: 219, Mismatches: 30, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
44 218 1.00
45 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (44 bp):
CAACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATCTT
Found at i:18671283 original size:8 final size:7
Alignment explanation
Indices: 18671272--18671320 Score: 55
Period size: 8 Copynumber: 6.7 Consensus size: 7
18671262 CTATTTTTAC
18671272 TTTTTCA
1 TTTTTCA
*
18671279 TTTTTTTA
1 -TTTTTCA
18671287 TTTTTCA
1 TTTTTCA
18671294 -TTTTCA
1 TTTTTCA
18671300 TTTTTTCA
1 -TTTTTCA
18671308 TTTTTCA
1 TTTTTCA
18671315 TATTTT
1 T-TTTT
18671321 TTCCGACTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 6 0.17
7 14 0.39
8 16 0.44
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCA
Found at i:18671283 original size:14 final size:13
Alignment explanation
Indices: 18671264--18671312 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
18671254 TAGCTTCTCT
18671264 ATTTTTACTTTTTC
1 ATTTTTA-TTTTTC
18671278 ATTTTTTTATTTTTC
1 A--TTTTTATTTTTC
*
18671293 ATTTTCATTTTTTC
1 ATTTTTA-TTTTTC
18671307 ATTTTT
1 ATTTTT
18671313 CATATTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 5 0.17
14 12 0.40
15 7 0.23
16 6 0.20
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTTTATTTTTC
Found at i:18671290 original size:15 final size:15
Alignment explanation
Indices: 18671265--18671312 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
18671255 AGCTTCTCTA
18671265 TTTTTACTTTTTCATT
1 TTTTTA-TTTTTCATT
18671281 TTTTTATTTTTCATT
1 TTTTTATTTTTCATT
**
18671296 TTCAT-TTTTTCATT
1 TTTTTATTTTTCATT
18671310 TTT
1 TTT
18671313 CATATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 11 0.38
15 12 0.41
16 6 0.21
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTATTTTTCATT
Found at i:18671297 original size:21 final size:21
Alignment explanation
Indices: 18671263--18671315 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
18671253 TTAGCTTCTC
*
18671263 TATTTTTACTTTTTCATTTTTT
1 TATTTTT-CATTTTCATTTTTT
18671285 TATTTTTCATTTTCATTTTTT
1 TATTTTTCATTTTCATTTTTT
*
18671306 CATTTTTCAT
1 TATTTTTCAT
18671316 ATTTTTTCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 22 0.76
22 7 0.24
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (21 bp):
TATTTTTCATTTTCATTTTTT
Found at i:18671313 original size:15 final size:16
Alignment explanation
Indices: 18671272--18671321 Score: 70
Period size: 15 Copynumber: 3.3 Consensus size: 16
18671262 CTATTTTTAC
*
18671272 TTTTTCATTTTT-TTA
1 TTTTTCATTTTTCATA
18671287 TTTTTCA-TTTTCAT-
1 TTTTTCATTTTTCATA
18671301 TTTTTCATTTTTCATA
1 TTTTTCATTTTTCATA
18671317 TTTTT
1 TTTTT
18671322 TCCGACTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 11 0.35
15 15 0.48
16 5 0.16
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCATTTTTCATA
Found at i:18672187 original size:5 final size:6
Alignment explanation
Indices: 18672172--18672262 Score: 58
Period size: 6 Copynumber: 14.3 Consensus size: 6
18672162 TGGCCTCTCA
* * * *
18672172 TTTTTC TTTTTC TTTTTC TCTTTA TTTTTC ATTTTTAT TTTTATT TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTT-C TTTT-TC TTTTTC
* **
18672223 ATTTTTGC TTTTGAC -TTTGA TTTTTC TTTTTC TTTTTC TT
1 -TTTTT-C TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC TT
18672263 ATTTTTTGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
6 41 0.61
7 24 0.36
8 2 0.03
ACGTcount: A:0.08, C:0.12, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:18672206 original size:19 final size:18
Alignment explanation
Indices: 18672178--18672219 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
18672168 CTCATTTTTC
*
18672178 TTTTTCTTTTTCTCTTTA
1 TTTTTCTTTTTATCTTTA
*
18672196 TTTTTCATTTTTATTTTTA
1 TTTTTC-TTTTTATCTTTA
18672215 TTTTT
1 TTTTT
18672220 TTCATTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTTTTTATCTTTA
Found at i:18672279 original size:6 final size:6
Alignment explanation
Indices: 18672266--18672328 Score: 90
Period size: 6 Copynumber: 10.3 Consensus size: 6
18672256 TTTTCTTATT
* * *
18672266 TTTTGA TTTAGA TTTTGA TTTAGA TTTAGA TTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
18672314 TTTTGA TTTTTGA TT
1 TTTTGA -TTTTGA TT
18672329 GAATCTGAGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
6 46 0.88
7 6 0.12
ACGTcount: A:0.21, C:0.00, G:0.16, T:0.63
Consensus pattern (6 bp):
TTTTGA
Found at i:18672283 original size:41 final size:40
Alignment explanation
Indices: 18672197--18672286 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 40
18672187 TTCTCTTTAT
* * *
18672197 TTTTCATTTTTATTTTTATTTTTTTCATTTTTGCTTTTGA
1 TTTTGATTTTTATTTTTATTTTTTTCATTTTTGATTTAGA
* * *
18672237 CTTTGATTTTTCTTTTTCTTTTTCTT-ATTTTTTGATTTAGA
1 TTTTGATTTTTATTTTTATTTTT-TTCA-TTTTTGATTTAGA
18672278 TTTTGATTT
1 TTTTGATTT
18672287 AGATTTAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
40 20 0.49
41 21 0.51
ACGTcount: A:0.12, C:0.08, G:0.07, T:0.73
Consensus pattern (40 bp):
TTTTGATTTTTATTTTTATTTTTTTCATTTTTGATTTAGA
Found at i:18677137 original size:19 final size:19
Alignment explanation
Indices: 18677113--18677175 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
18677103 ATATATATAT
18677113 TAATAAATGATGAATTTAA
1 TAATAAATGATGAATTTAA
* *
18677132 TAATAATATG-TCAAGTTAAA
1 TAATAA-ATGATGAA-TTTAA
18677152 TTTAAT-AAT-ATGAATTTAA
1 --TAATAAATGATGAATTTAA
18677171 TAATA
1 TAATA
18677176 GTAATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
17 4 0.12
19 13 0.38
20 12 0.35
21 1 0.03
22 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (19 bp):
TAATAAATGATGAATTTAA
Found at i:18678220 original size:19 final size:18
Alignment explanation
Indices: 18678189--18678233 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
18678179 TTGCTGTCGA
18678189 TTTTTGCTCCTCT-TTTTGT
1 TTTTTG-TCCTCTGTTTT-T
18678208 TTGTTTGTCCTCTGTTTTT
1 TT-TTTGTCCTCTGTTTTT
18678227 TTTTTGT
1 TTTTTGT
18678234 GACATTGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 5 0.21
19 11 0.46
20 8 0.33
ACGTcount: A:0.00, C:0.16, G:0.13, T:0.71
Consensus pattern (18 bp):
TTTTTGTCCTCTGTTTTT
Found at i:18681672 original size:36 final size:36
Alignment explanation
Indices: 18681632--18681711 Score: 160
Period size: 36 Copynumber: 2.2 Consensus size: 36
18681622 GAAACAAATT
18681632 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
1 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
18681668 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
1 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
18681704 AAGAATAA
1 AAGAATAA
18681712 CAAGGAAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (36 bp):
AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
Found at i:18683017 original size:17 final size:17
Alignment explanation
Indices: 18682961--18683020 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
18682951 TTCCTCAAAT
* *
18682961 TTTAGTAAAATTAATAAA
1 TTTAATAAAATT-TTAAA
* *
18682979 TTTTAATTAAAATATT-AC
1 -TTTAA-TAAAATTTTAAA
18682997 TTTAATAAAATTTTAAA
1 TTTAATAAAATTTTAAA
18683014 TTTAATA
1 TTTAATA
18683021 TAAAAATACA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
16 8 0.24
17 13 0.39
18 1 0.03
19 5 0.15
20 6 0.18
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TTTAATAAAATTTTAAA
Found at i:18685576 original size:14 final size:14
Alignment explanation
Indices: 18685559--18685588 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18685549 AAAATATTTG
18685559 TATTATTTTAATAT
1 TATTATTTTAATAT
*
18685573 TATTTTTTTAATAT
1 TATTATTTTAATAT
18685587 TA
1 TA
18685589 AAAAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTATTTTAATAT
Found at i:18687587 original size:34 final size:33
Alignment explanation
Indices: 18687528--18687669 Score: 158
Period size: 34 Copynumber: 4.2 Consensus size: 33
18687518 AACATGTCTT
* * *
18687528 TTGCTACTGTATTGATTTATGATAAGCATATTAA
1 TTGCTA-TGTATTGATCTGTTATAAGCATATTAA
* *
18687562 TTGCAATTGTATTGACCTGTTATAAGCATATTAA
1 TTGCTA-TGTATTGATCTGTTATAAGCATATTAA
* *
18687596 ATACTACTGTATTGATCTGTTATAAGCATATTAA
1 TTGCTA-TGTATTGATCTGTTATAAGCATATTAA
***
18687630 TTGCTACCAATTGATCTGTTATAAGCATATTAA
1 TTGCTATGTATTGATCTGTTATAAGCATATTAA
*
18687663 ATGCTAT
1 TTGCTAT
18687670 CACATTGATC
Statistics
Matches: 90, Mismatches: 18, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
33 29 0.32
34 61 0.68
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (33 bp):
TTGCTATGTATTGATCTGTTATAAGCATATTAA
Found at i:18687610 original size:68 final size:67
Alignment explanation
Indices: 18687531--18687664 Score: 187
Period size: 68 Copynumber: 2.0 Consensus size: 67
18687521 ATGTCTTTTG
* ***
18687531 CTACTGTATTGATTTATGATAAGCATATTAATTGCAATTGTATTGACCTGTTATAAGCATATTAA
1 CTACTGTATTGATCTATGATAAGCATATTAATTGCAA-CCAATTGACCTGTTATAAGCATATTAA
18687596 ATA
65 ATA
* * * *
18687599 CTACTGTATTGATCTGTTATAAGCATATTAATTGCTACCAATTGATCTGTTATAAGCATATTAAA
1 CTACTGTATTGATCTATGATAAGCATATTAATTGCAACCAATTGACCTGTTATAAGCATATTAAA
18687664 T
66 T
18687665 GCTATCACAT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
67 25 0.43
68 33 0.57
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (67 bp):
CTACTGTATTGATCTATGATAAGCATATTAATTGCAACCAATTGACCTGTTATAAGCATATTAAA
TA
Found at i:18687648 original size:33 final size:33
Alignment explanation
Indices: 18687572--18687680 Score: 146
Period size: 34 Copynumber: 3.2 Consensus size: 33
18687562 TTGCAATTGT
* * **
18687572 ATTGACCTGTTATAAGCATATTAAATACTACTGT
1 ATTGATCTGTTATAAGCATATTAAATGCTAC-CA
*
18687606 ATTGATCTGTTATAAGCATATTAATTGCTACCA
1 ATTGATCTGTTATAAGCATATTAAATGCTACCA
*
18687639 ATTGATCTGTTATAAGCATATTAAATGCTATCA
1 ATTGATCTGTTATAAGCATATTAAATGCTACCA
18687672 CATTGATCT
1 -ATTGATCT
18687681 AAGCATGCCA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
33 31 0.46
34 36 0.54
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (33 bp):
ATTGATCTGTTATAAGCATATTAAATGCTACCA
Found at i:18687677 original size:67 final size:68
Alignment explanation
Indices: 18687549--18687680 Score: 169
Period size: 67 Copynumber: 2.0 Consensus size: 68
18687539 TTGATTTATG
*** **
18687549 ATAAGCATATTAATTGCAATTGTATTGACCTGTTATAAGCATATTAAATACTACTGTATTGATCT
1 ATAAGCATATTAATTGCAATCCAATTGACCTGTTATAAGCATATTAAATACTACTACATTGATCT
18687614 GTT
66 GTT
* * *
18687617 ATAAGCATATTAATTGCTA-CCAATTGATCTGTTATAAGCATATTAAATGCTA-TCACATTGATC
1 ATAAGCATATTAATTGCAATCCAATTGACCTGTTATAAGCATATTAAATACTACT-ACATTGATC
18687680 T
65 T
18687681 AAGCATGCCA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
66 1 0.02
67 36 0.65
68 18 0.33
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (68 bp):
ATAAGCATATTAATTGCAATCCAATTGACCTGTTATAAGCATATTAAATACTACTACATTGATCT
GTT
Found at i:18687932 original size:45 final size:45
Alignment explanation
Indices: 18687758--18687919 Score: 173
Period size: 45 Copynumber: 3.6 Consensus size: 45
18687748 AAATTTGCTA
* *
18687758 TGTATCCACAGCTAGAGGCAGATTCTATCTGTGAGATATTTGTTG
1 TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
* * * * *
18687803 TGCATCCACAACTAGAGGTAGATTCTAACTGTAGGA-TTTTGTTG
1 TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
* * * * * *
18687847 TGTTTTCACAGCTAAAAGCAGATTGTATCTGCAAGATTTTTGTTG
1 TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
* * *
18687892 TGTATCCACAGCCAGAGGTAAATTCTAT
1 TGTATCCACAGCTAGAGGCAGATTCTAT
18687920 TTGTGGGATT
Statistics
Matches: 90, Mismatches: 26, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
44 32 0.36
45 58 0.64
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (45 bp):
TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
Found at i:18687987 original size:22 final size:22
Alignment explanation
Indices: 18687947--18687989 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
18687937 GTGTCCACAT
* *
18687947 CCATTGGTAGTTTATCTACAAA
1 CCATTGGTAGTTAAACTACAAA
*
18687969 CCATTGGTGGTTAAACTACAA
1 CCATTGGTAGTTAAACTACAA
18687990 CCCGATGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (22 bp):
CCATTGGTAGTTAAACTACAAA
Found at i:18688854 original size:17 final size:17
Alignment explanation
Indices: 18688832--18688865 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
18688822 ACGATCATAG
18688832 TAATAACAA-AAGACTTC
1 TAATAA-AATAAGACTTC
18688849 TAATAAAATAAGACTTC
1 TAATAAAATAAGACTTC
18688866 GTTTGTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (17 bp):
TAATAAAATAAGACTTC
Found at i:18692615 original size:32 final size:32
Alignment explanation
Indices: 18692576--18692659 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
18692566 TATTGAATTT
*
18692576 AGTTTGTTGGATTTTGAAATTATTATGTCTTGA
1 AGTTTGTTGGATATTGAAATTATTATGT-TTGA
* * *
18692609 A-TTTGTTAGATATTGAATTTATTATGTTTTA
1 AGTTTGTTGGATATTGAAATTATTATGTTTGA
*
18692640 AGCTTGTTGGATATTGAAAT
1 AGTTTGTTGGATATTGAAAT
18692660 GATTGACAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 4 0.09
32 38 0.88
33 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.51
Consensus pattern (32 bp):
AGTTTGTTGGATATTGAAATTATTATGTTTGA
Found at i:18693600 original size:25 final size:26
Alignment explanation
Indices: 18693549--18693601 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18693539 TAAAAGTAAG
18693549 AAGCATAGAAAAATTTGGCTTCAAAA
1 AAGCATAGAAAAATTTGGCTTCAAAA
18693575 AAGCATAGAAAAATTTGGCTTCAAAA
1 AAGCATAGAAAAATTTGGCTTCAAAA
18693601 A
1 A
18693602 TTTTCTCAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.23
Consensus pattern (26 bp):
AAGCATAGAAAAATTTGGCTTCAAAA
Found at i:18694117 original size:19 final size:19
Alignment explanation
Indices: 18694093--18694130 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
18694083 CATCCAAACA
*
18694093 CCAGAAAAATAAATCATTT
1 CCAGAAAAAAAAATCATTT
18694112 CCAGAAAAAAAAATCATTT
1 CCAGAAAAAAAAATCATTT
18694131 TTAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (19 bp):
CCAGAAAAAAAAATCATTT
Found at i:18694670 original size:7 final size:7
Alignment explanation
Indices: 18694624--18694682 Score: 52
Period size: 7 Copynumber: 8.3 Consensus size: 7
18694614 TTTAATCAAA
*
18694624 AAATTTT
1 AAATTAT
18694631 AAATATAT
1 AAAT-TAT
18694639 AAAATTAT
1 -AAATTAT
18694647 AAA--A-
1 AAATTAT
18694651 AAATTAAAT
1 AAATT--AT
18694660 AAATTAT
1 AAATTAT
18694667 AAATTAT
1 AAATTAT
18694674 AAATTAT
1 AAATTAT
18694681 AA
1 AA
18694683 TAAAAATATT
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
4 3 0.07
5 1 0.02
7 25 0.57
8 6 0.14
9 9 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
AAATTAT
Found at i:18694701 original size:37 final size:35
Alignment explanation
Indices: 18694621--18694689 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
18694611 TTATTTAATC
*
18694621 AAAAAATTTTAAATATATAAAATTATAAAAAAATT
1 AAAAAATTATAAATATATAAAATTATAAAAAAATT
18694656 AAATAAATTATAAAT-TAT-AAATTATAATAAAAAT
1 AAA-AAATTATAAATATATAAAATTATAA-AAAAAT
18694690 ATTATAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 9 0.29
35 12 0.39
36 10 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (35 bp):
AAAAAATTATAAATATATAAAATTATAAAAAAATT
Found at i:18694807 original size:9 final size:9
Alignment explanation
Indices: 18694776--18694837 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
18694766 ATTTTTTTAA
18694776 AAAAATTAT
1 AAAAATTAT
18694785 AAAAACATTA-
1 -AAAA-ATTAT
*
18694795 AAAAGTTAT
1 AAAAATTAT
18694804 AAAAATTAT
1 AAAAATTAT
**
18694813 AAAAACAAT
1 AAAAATTAT
18694822 AAAAAGTTAT
1 AAAAA-TTAT
18694832 AGAAAA
1 A-AAAA
18694838 ATTTTGTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
8 3 0.07
9 24 0.57
10 7 0.17
11 8 0.19
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (9 bp):
AAAAATTAT
Found at i:18694814 original size:28 final size:28
Alignment explanation
Indices: 18694776--18694837 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
18694766 ATTTTTTTAA
*
18694776 AAAAATTATAAAAACATTAAAAAGTTAT
1 AAAAATTATAAAAACAATAAAAAGTTAT
18694804 AAAAATTATAAAAACAATAAAAAGTTAT
1 AAAAATTATAAAAACAATAAAAAGTTAT
18694832 AGAAAA
1 A-AAAA
18694838 ATTTTGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (28 bp):
AAAAATTATAAAAACAATAAAAAGTTAT
Found at i:18695353 original size:18 final size:18
Alignment explanation
Indices: 18695332--18695369 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
18695322 TTTTTTTAAA
* *
18695332 TATAAATTTTTTTATTTT
1 TATAAATATTTTTAATTT
18695350 TATAAATATTTTTAATTT
1 TATAAATATTTTTAATTT
18695368 TA
1 TA
18695370 ATTTTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TATAAATATTTTTAATTT
Found at i:18695361 original size:19 final size:18
Alignment explanation
Indices: 18695332--18695368 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
18695322 TTTTTTTAAA
*
18695332 TATAAATTTTTTTATTTT
1 TATAAATTTTTTAATTTT
18695350 TATAAATATTTTTAATTTT
1 TATAAAT-TTTTTAATTTT
18695369 AATTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATAAATTTTTTAATTTT
Found at i:18695665 original size:14 final size:14
Alignment explanation
Indices: 18695646--18695673 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
18695636 AGATTGGTCT
18695646 TGTGTGGGGTGCCA
1 TGTGTGGGGTGCCA
18695660 TGTGTGGGGTGCCA
1 TGTGTGGGGTGCCA
18695674 ACTGAGGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.50, T:0.29
Consensus pattern (14 bp):
TGTGTGGGGTGCCA
Found at i:18699651 original size:34 final size:34
Alignment explanation
Indices: 18699613--18699721 Score: 137
Period size: 34 Copynumber: 3.2 Consensus size: 34
18699603 TTAATTCGTG
* * *
18699613 ATAAGCATATTAATTACTAACGTATTGATCAGTT
1 ATAAGCATATTAATTGCTAACATATTGATCTGTT
* * **
18699647 ATAAGCATATTATTTGTTATTATATTGATCTGTT
1 ATAAGCATATTAATTGCTAACATATTGATCTGTT
* *
18699681 ATAAGCATATTAATTGCTACCATATTGATCTTTT
1 ATAAGCATATTAATTGCTAACATATTGATCTGTT
18699715 ATAAGCA
1 ATAAGCA
18699722 AGCCATATTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 63 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (34 bp):
ATAAGCATATTAATTGCTAACATATTGATCTGTT
Found at i:18701183 original size:19 final size:20
Alignment explanation
Indices: 18701147--18701184 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
18701137 GTAACTTTTA
* *
18701147 TTTTTTAAAATTTCTTTGAT
1 TTTTTTAAAATATATTTGAT
18701167 TTTTTTAAAA-ATATTTGA
1 TTTTTTAAAATATATTTGA
18701185 ATAGTTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTTTTAAAATATATTTGAT
Found at i:18703222 original size:36 final size:36
Alignment explanation
Indices: 18703182--18703264 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
18703172 TGATGATTTT
* * *
18703182 TGTGAAAG-AGAATATGTGGGTTTACTGTTCATGCCA
1 TGTGAAAGTA-AATATGTGAGTATACTATTCATGCCA
* **
18703218 TGTGACAGTAAATATGTGAGTATGTTATTCATGCCA
1 TGTGAAAGTAAATATGTGAGTATACTATTCATGCCA
*
18703254 TGTGACAGTAA
1 TGTGAAAGTAA
18703265 TTATAATGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
36 39 0.98
37 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (36 bp):
TGTGAAAGTAAATATGTGAGTATACTATTCATGCCA
Found at i:18709123 original size:35 final size:36
Alignment explanation
Indices: 18709061--18709132 Score: 110
Period size: 35 Copynumber: 2.0 Consensus size: 36
18709051 TGTGAAAGAG
* *
18709061 AATATGTGGGTATGTTATTCGTTCCATG-GACAGTA
1 AATATGTGGGTATGTTATTCATGCCATGTGACAGTA
*
18709096 AATATGTGGGTATGTTATTCATGCCATGTGATAGTA
1 AATATGTGGGTATGTTATTCATGCCATGTGACAGTA
18709132 A
1 A
18709133 TTGTAATGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 26 0.79
36 7 0.21
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (36 bp):
AATATGTGGGTATGTTATTCATGCCATGTGACAGTA
Found at i:18709600 original size:40 final size:40
Alignment explanation
Indices: 18709549--18709664 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 40
18709539 GTTTGGACAA
* *
18709549 AAAACGTCGCTAAAAATCGAGCATTAGCGGCGC-TTTACG
1 AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTTACG
* *
18709588 TAAAACGCCGCTAAAGATCGAGCATTAGCAGCGCTTTTATG
1 -AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTTACG
* *
18709629 AAAGCGCCGCTAAAAAT-GAGCATTAGCAGCGGTTTT
1 AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTT
18709665 TGGAAAAACG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 18 0.26
40 45 0.66
41 5 0.07
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTTACG
Found at i:18709683 original size:39 final size:40
Alignment explanation
Indices: 18709548--18709684 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 40
18709538 CGTTTGGACA
* * * **
18709548 AAAAACGTCGCTAAAAATCGAGCATTAGCGGCGCTTTACG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTTTG
* * *
18709588 TAAAACGCCGCTAAAGATCGAGCATTAGCAGCGCTTTTATG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTT-TG
*
18709629 -AAAGCGCCGCTAAAAAT-GAGCATTAGCAGCGGTTTTTGG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTTT-G
* *
18709668 AAAAACGTCGCAAAAAA
1 AAAAACGCCGCTAAAAA
18709685 CCTAAGCCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 19 0.23
40 61 0.74
41 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTTTG
Found at i:18709777 original size:41 final size:41
Alignment explanation
Indices: 18709701--18709894 Score: 219
Period size: 41 Copynumber: 4.7 Consensus size: 41
18709691 CCTTTCGGGG
* **
18709701 CTTTAGCGACGTTTTTAAAAACAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGGAAA-AGCGCCGCTAATGCTCAGAT
* ** *
18709743 CTTTAACAACGTTTTTGGAAAGGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* * *
18709784 CTTTAGCGGTGTTTTTGGAAAAGTGCCGCTAATGTTCAGAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* * *
18709825 CTTTAGCGGCGTTTTTGGAAAACCACCGCTAATGCTC-GAGG
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA-T
* **
18709866 CTTTAGTGGCGTTTTTAAAAAAGCGCCGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGC
18709895 AAAAACATTT
Statistics
Matches: 128, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
40 2 0.02
41 109 0.85
42 17 0.13
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
Found at i:18710377 original size:7 final size:7
Alignment explanation
Indices: 18710367--18710401 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
18710357 TAAGGTTTAT
18710367 GGGTTAG
1 GGGTTAG
18710374 GGGTTAG
1 GGGTTAG
18710381 GGGTTAG
1 GGGTTAG
* *
18710388 AGGTTAA
1 GGGTTAG
18710395 GGGTTAG
1 GGGTTAG
18710402 AGATTTAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.51, T:0.29
Consensus pattern (7 bp):
GGGTTAG
Found at i:18710499 original size:63 final size:63
Alignment explanation
Indices: 18710430--18710561 Score: 228
Period size: 63 Copynumber: 2.1 Consensus size: 63
18710420 TTTAGTGTCA
* *
18710430 GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATGTTTAGG
1 GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAAG
* *
18710493 GGTTAGGGTTTATGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAGGTTTAAG
1 GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAAG
18710556 GGTTAG
1 GGTTAG
18710562 TTGTTAAGGG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (63 bp):
GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAAG
Found at i:18710971 original size:18 final size:18
Alignment explanation
Indices: 18710948--18710983 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
18710938 TTGAGTTTTT
18710948 GAATTCGAATAACTCGAA
1 GAATTCGAATAACTCGAA
*
18710966 GAATTCGAATAATTCGAA
1 GAATTCGAATAACTCGAA
18710984 TATCAAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (18 bp):
GAATTCGAATAACTCGAA
Found at i:18710984 original size:9 final size:9
Alignment explanation
Indices: 18710949--18710985 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
18710939 TGAGTTTTTG
18710949 AATTCGAAT
1 AATTCGAAT
* *
18710958 AACTCGAAG
1 AATTCGAAT
18710967 AATTCGAAT
1 AATTCGAAT
18710976 AATTCGAAT
1 AATTCGAAT
18710985 A
1 A
18710986 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (9 bp):
AATTCGAAT
Found at i:18712861 original size:147 final size:144
Alignment explanation
Indices: 18712697--18712983 Score: 389
Period size: 147 Copynumber: 2.0 Consensus size: 144
18712687 TTTAGTATAA
* * * * * *
18712697 CAAAACAGTGTCGTTTTATTCGAAATGAAATAAGTTTTTGTTG-CGTTTTTGATAAAGACT-CCG
1 CAAAACAGTGTCATTTTATTCAAAATGAAATAAGTTTTTG-TGACATTTCTCATAAA-AATACCG
* * *
18712760 CAAAAGCTAAGCAATAGCGGCGTTTTTATAAAAAAAGACACAAAAAATAATTTTACTTTTAAAAA
64 CAAAAGCTAAACAATAGCGGCGTTTTTATAAAAAAACACAC-AAAAA-AA-TTTACTTTAAAAAA
18712825 ATAGCGCCATTTTATTTAG
126 ATAGCGCCATTTTATTTAG
*
18712844 CAAAACAGTGTCATTTTATTCAAAATGAAATAATTTTTTGTGACATTTCTCATAAAAATACCGCA
1 CAAAACAGTGTCATTTTATTCAAAATGAAATAAGTTTTTGTGACATTTCTCATAAAAATACCGCA
* * * *
18712909 AAAGGTAAACAATAGCGGCGTTTTTATTAAAAACCCCACAAAAAAATTTACTTTAAAAAAATAGC
66 AAAGCTAAACAATAGCGGCGTTTTTATAAAAAAACACACAAAAAAATTTACTTTAAAAAAATAGC
18712974 GCCATTTTAT
131 GCCATTTTAT
18712984 AAAATCCCCT
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
144 28 0.23
145 2 0.02
146 9 0.07
147 85 0.69
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (144 bp):
CAAAACAGTGTCATTTTATTCAAAATGAAATAAGTTTTTGTGACATTTCTCATAAAAATACCGCA
AAAGCTAAACAATAGCGGCGTTTTTATAAAAAAACACACAAAAAAATTTACTTTAAAAAAATAGC
GCCATTTTATTTAG
Found at i:18721288 original size:18 final size:18
Alignment explanation
Indices: 18721267--18721306 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
18721257 AAATATGTTG
18721267 AAAAATCATAATA-ATTAT
1 AAAAATCATAA-ACATTAT
18721285 AAAAATCATAAACATTAT
1 AAAAATCATAAACATTAT
18721303 AAAA
1 AAAA
18721307 TATATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAAATCATAAACATTAT
Found at i:18721608 original size:38 final size:39
Alignment explanation
Indices: 18721552--18721626 Score: 91
Period size: 38 Copynumber: 1.9 Consensus size: 39
18721542 TAATTATTAG
*
18721552 TAAAATATCTATTGGAAACCCA-ATTTTATAACCAAATAT
1 TAAAATATCTATTGGAAA-CCATACTTTATAACCAAATAT
* * *
18721591 TAAAATTTTTATT-GAAACCATACTTTGTAACCAAAT
1 TAAAATATCTATTGGAAACCATACTTTATAACCAAAT
18721627 GTTTTGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
37 3 0.10
38 17 0.55
39 11 0.35
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (39 bp):
TAAAATATCTATTGGAAACCATACTTTATAACCAAATAT
Found at i:18721888 original size:39 final size:39
Alignment explanation
Indices: 18721834--18721909 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
18721824 TTTTACGAAA
18721834 TATTTGGTTACAAAATTGGGTTTCCAATAGGAATTTTTG
1 TATTTGGTTACAAAATTGGGTTTCCAATAGGAATTTTTG
* *
18721873 TATTTTGTTACAAAATTGGGTTTCTAATAGGAATTTT
1 TATTTGGTTACAAAATTGGGTTTCCAATAGGAATTTT
18721910 AGTAATAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (39 bp):
TATTTGGTTACAAAATTGGGTTTCCAATAGGAATTTTTG
Found at i:18722464 original size:20 final size:19
Alignment explanation
Indices: 18722434--18722472 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
18722424 AATTAACAAA
18722434 TCAGATTTTTTTTCCTTAT
1 TCAGATTTTTTTTCCTTAT
18722453 TCAGATTTTTTTTCCTTAT
1 TCAGATTTTTTTTCCTTAT
18722472 T
1 T
18722473 TGTAGAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.64
Consensus pattern (19 bp):
TCAGATTTTTTTTCCTTAT
Found at i:18725596 original size:43 final size:43
Alignment explanation
Indices: 18725530--18726119 Score: 813
Period size: 43 Copynumber: 13.7 Consensus size: 43
18725520 GCGTCGCTAA
* * **
18725530 CTTTTGCGGCACTTTTCCCACAAACGCCGCTATAGACCACAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* * *
18725573 CTTTAGCGGCGCTTTTCCCACAAACGTCGCTATAGATCATGAG
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* *
18725616 CTTTAGCGGCGCTCTTCCCACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* *
18725659 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGGCCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* *
18725702 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAT
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* * *
18725745 CTTTAGCGGCGTTTTTCTCACAAACGCCGCTATAGGCCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* *
18725788 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAT
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* * *
18725831 CTTTAGCGGCGTTTTTCTCACAAACGCCGCTATAGGCCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* *
18725874 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAT
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* * *
18725917 CTTTAGCGGCGTTTTTCTCACAAACGCCGCTATAGGCCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* *
18725960 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAT
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* * *
18726003 CTTTAGCGGCGTTTTTCTCACAAACGCCGCTATAGGCCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* * * *
18726046 CTTTAGCGGCGCTTTTCCCACAAATGCTGCTATAGATCA-AAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
* * * * *
18726088 CTTTAGCGACGCTTCTCGCAAAAACACCGCTA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTA
18726120 AAAACATATC
Statistics
Matches: 478, Mismatches: 69, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
42 27 0.06
43 451 0.94
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGAC
Found at i:18725635 original size:86 final size:86
Alignment explanation
Indices: 18725530--18726069 Score: 945
Period size: 86 Copynumber: 6.3 Consensus size: 86
18725520 GCGTCGCTAA
* * * ** * * *
18725530 CTTTTGCGGCACTTTTCCCACAAACGCCGCTATAGACCACAACCTTTAGCGGCGCTTTTCCCACA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
* ** *
18725595 AACGTCGCTATAGATCATGAG
66 AACGCCGCTATAGGCCATGAC
* * *
18725616 CTTTAGCGGCGCTCTTCCCACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
18725681 AACGCCGCTATAGGCCATGAC
66 AACGCCGCTATAGGCCATGAC
18725702 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
18725767 AACGCCGCTATAGGCCATGAC
66 AACGCCGCTATAGGCCATGAC
18725788 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
18725853 AACGCCGCTATAGGCCATGAC
66 AACGCCGCTATAGGCCATGAC
18725874 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
18725939 AACGCCGCTATAGGCCATGAC
66 AACGCCGCTATAGGCCATGAC
18725960 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
18726025 AACGCCGCTATAGGCCATGAC
66 AACGCCGCTATAGGCCATGAC
18726046 CTTTAGCGGCGCTTTTCCCACAAA
1 CTTTAGCGGCGCTTTTCCCACAAA
18726070 TGCTGCTATA
Statistics
Matches: 440, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 440 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (86 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTCTCACA
AACGCCGCTATAGGCCATGAC
Found at i:18729230 original size:4 final size:4
Alignment explanation
Indices: 18729221--18729254 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
18729211 AAGTTTTATT
18729221 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
18729255 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:18729262 original size:22 final size:22
Alignment explanation
Indices: 18729204--18729263 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
18729194 AAGTGGCCCA
*
18729204 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
18729228 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
18729249 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
18729264 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:18731055 original size:43 final size:43
Alignment explanation
Indices: 18730969--18731171 Score: 228
Period size: 43 Copynumber: 4.7 Consensus size: 43
18730959 TTTTTGCTAG
* * * *
18730969 AAGCGCCGCTAAAGGT-TTGTTTTTTAGTGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
* * *
18731011 AAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
* * * * *
18731054 AAGCGTCGCTAAATGTCTTGGTCTTTAGCGGCATTTTTGGGAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
* * * * * *
18731097 AAGTGCCGCTCAAGGTCGTGATCTTTAGCAGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
*
18731140 CAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGC
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGC
18731172 ATTTTTTCCA
Statistics
Matches: 132, Mismatches: 28, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 16 0.12
43 116 0.88
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
Found at i:18734240 original size:68 final size:68
Alignment explanation
Indices: 18734131--18734402 Score: 330
Period size: 68 Copynumber: 4.0 Consensus size: 68
18734121 ATTAGAAATC
* ** * *
18734131 CACCAGGACAATAAACATCGGATCATATTGTGTAAGACCATAGTTGGGTTATGGCAACATATGGA
1 CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
18734196 GTT
66 GTT
* * * * * *
18734199 CACCAGGACAGTAACCATTGGATCATATCATGTAAGACCATAGTTGGGTTATGACAACATATGGA
1 CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
*
18734264 GTC
66 GTT
* * *
18734267 CGCCAAGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGAAACATATGGA
1 CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
18734332 G-T
66 GTT
* * * * * * *
18734334 CTTCCAGGACAATAAATATGGGATCATATAATGTAAGACCATAACTGGGCTATGGCAACAAATGA
1 C-ACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGG
18734399 AGTT
65 AGTT
18734403 TGCTAGAATG
Statistics
Matches: 176, Mismatches: 26, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
67 1 0.01
68 174 0.99
69 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (68 bp):
CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
GTT
Found at i:18742355 original size:27 final size:27
Alignment explanation
Indices: 18742325--18742502 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18742315 ATATTGAGTC
* * * *
18742325 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18742352 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18742379 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18742407 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18742434 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18742461 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18742488 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18742503 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18742464 original size:82 final size:81
Alignment explanation
Indices: 18742346--18742501 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18742336 TGCTATATAA
* *
18742346 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
18742411 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
18742428 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
18742492 CACTTAGTGC
65 CACTTAGTGC
18742502 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:18750048 original size:28 final size:28
Alignment explanation
Indices: 18749985--18750110 Score: 227
Period size: 28 Copynumber: 4.5 Consensus size: 28
18749975 ATATTAAGTC
* *
18749985 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
18750012 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
18750040 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
18750068 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
18750096 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18750111 GTACAATTTA
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 21 0.22
28 75 0.78
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:18761839 original size:25 final size:25
Alignment explanation
Indices: 18761811--18761927 Score: 89
Period size: 25 Copynumber: 4.7 Consensus size: 25
18761801 TCTTGTACAT
18761811 GTATGCTCAT-ACGAGCTATGAATCG
1 GTATGCTC-TCACGAGCTATGAATCG
* *
18761836 GTATGCTCTCACAAGCTATGAATCA
1 GTATGCTCTCACGAGCTATGAATCG
* * * * *
18761861 ATATACTCTCACGAGCTGTAAATTG
1 GTATGCTCTCACGAGCTATGAATCG
* *
18761886 GTAAGCTCAT-ACGAG-T-TGAAATTG
1 GTATGCTC-TCACGAGCTATG-AATCG
*
18761910 GTAAGCTCTCACGAGCTA
1 GTATGCTCTCACGAGCTA
18761928 AAAATTGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 11
0.75 0.13 0.11
Matches are distributed among these distances:
23 2 0.03
24 20 0.27
25 50 0.68
26 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATGAATCG
Found at i:18761908 original size:24 final size:24
Alignment explanation
Indices: 18761871--18761952 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 24
18761861 ATATACTCTC
*
18761871 ACGAGCTGTAAATTGGTAAGCTCAT
1 ACGAGTTG-AAATTGGTAAGCTCAT
18761896 ACGAGTTGAAATTGGTAAGCTC-T
1 ACGAGTTGAAATTGGTAAGCTCAT
**
18761919 CACGAGCTAAAAATTGGTAAGCTCAT
1 -ACGAG-TTGAAATTGGTAAGCTCAT
*
18761945 ACAAGTTG
1 ACGAGTTG
18761953 TGGTGCGTCC
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 1 0.02
24 20 0.42
25 26 0.54
26 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (24 bp):
ACGAGTTGAAATTGGTAAGCTCAT
Found at i:18761938 original size:25 final size:25
Alignment explanation
Indices: 18761866--18761942 Score: 95
Period size: 25 Copynumber: 3.1 Consensus size: 25
18761856 AATCAATATA
**
18761866 CTCTCACGAGCTGTAAATTGGTAAG
1 CTCTCACGAGCTAAAAATTGGTAAG
**
18761891 CTCAT-ACGAG-TTGAAATTGGTAAG
1 CTC-TCACGAGCTAAAAATTGGTAAG
18761915 CTCTCACGAGCTAAAAATTGGTAAG
1 CTCTCACGAGCTAAAAATTGGTAAG
18761940 CTC
1 CTC
18761943 ATACAAGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
23 1 0.02
24 20 0.44
25 23 0.51
26 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
CTCTCACGAGCTAAAAATTGGTAAG
Found at i:18764317 original size:32 final size:32
Alignment explanation
Indices: 18764250--18764318 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
18764240 TCAACATTTA
*
18764250 TTATTTTTCAGACTTTGAGCAAGCTTTGCTAT
1 TTATTTTTCAGACTTTGAGCAAGATTTGCTAT
* * * *
18764282 TTATTTTTGAGATTTTTGAGCAATATTTTCT-T
1 TTATTTTTCAGA-CTTTGAGCAAGATTTGCTAT
18764314 TTATT
1 TTATT
18764319 CTTTTGAGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 17 0.55
33 14 0.45
ACGTcount: A:0.22, C:0.10, G:0.13, T:0.55
Consensus pattern (32 bp):
TTATTTTTCAGACTTTGAGCAAGATTTGCTAT
Found at i:18768073 original size:369 final size:369
Alignment explanation
Indices: 18767394--18768134 Score: 1365
Period size: 369 Copynumber: 2.0 Consensus size: 369
18767384 GAAAGAAGAA
*
18767394 GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGGTCTTTCT
1 GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGATCTTTCT
*
18767459 ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCATGATAATATTTAACGAA
66 ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
*
18767524 ATCAGCTCATTTTTTGTTATATCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
131 ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
18767589 GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
196 GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
*
18767654 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCAGTATCTAATGATCTTTTCAAAATCGTT
261 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
*
18767719 AAGTCTAACTCGAGTGACTCTTCTCTTGATGGGTTGGGTTGCTT
326 AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
* * * *
18767763 GTAATGTTGACCAACAATTATATTCAATATTTGCTTAATAAATAGCAACAGGAAGTGATCTTTCT
1 GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGATCTTTCT
* *
18767828 GTTTTTCTTTGCTCGACTTTCTGTCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
66 ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
18767893 ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
131 ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
* *
18767958 GGGATCTATGATCCTTGCTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTTAAGATT
196 GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
18768023 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
261 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
18768088 AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
326 AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
18768132 GTA
1 GTA
18768135 CTCATGTGAT
Statistics
Matches: 359, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
369 359 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (369 bp):
GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGATCTTTCT
ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
Found at i:18776024 original size:50 final size:50
Alignment explanation
Indices: 18775914--18776050 Score: 130
Period size: 50 Copynumber: 2.7 Consensus size: 50
18775904 TTATGAGATG
* * * * **
18775914 TCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCACCGAGATAAGAAC
** * *
18775964 TCCCCCGTAAGATAATGTCTAGGACATGGCATGGGCACCGATATAAGAAC
1 TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCACCGAGATAAGAAC
* * * * * *
18776014 TCTCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCA
18776051 GTACAGGAAA
Statistics
Matches: 68, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 68 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCACCGAGATAAGAAC
Found at i:18783330 original size:28 final size:28
Alignment explanation
Indices: 18783298--18783354 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
18783288 ACCATGTATA
*
18783298 TATTAACCCAAAGAAAATTGAATAATAC
1 TATTAACCCAAAGAAAATCGAATAATAC
18783326 TATTAACCCAAAGAAAATCGAATAATAC
1 TATTAACCCAAAGAAAATCGAATAATAC
18783354 T
1 T
18783355 TTTGAAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.53, C:0.16, G:0.07, T:0.25
Consensus pattern (28 bp):
TATTAACCCAAAGAAAATCGAATAATAC
Found at i:18786229 original size:56 final size:56
Alignment explanation
Indices: 18786160--18786273 Score: 192
Period size: 56 Copynumber: 2.0 Consensus size: 56
18786150 TCTCATGGTC
*
18786160 CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTTAATTGTCAATTAGTGT
1 CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTCAATTGTCAATTAGTGT
* * *
18786216 CTGCATTTCACAACATGACAATTGTTTCATGTTCCAGTTCAATTGTCAGTTAGTGT
1 CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTCAATTGTCAATTAGTGT
18786272 CT
1 CT
18786274 ACAATGTTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (56 bp):
CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTCAATTGTCAATTAGTGT
Found at i:18788301 original size:18 final size:18
Alignment explanation
Indices: 18788267--18788300 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18788257 ATCAATATCG
*
18788267 ATTTAACATGATTAAAAT
1 ATTTAACATGATAAAAAT
18788285 ATTTAACA-GATAAAAA
1 ATTTAACATGATAAAAA
18788301 AAAACTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (18 bp):
ATTTAACATGATAAAAAT
Found at i:18805236 original size:8 final size:8
Alignment explanation
Indices: 18805212--18805245 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
18805202 TTTTTTTGTG
18805212 AAATTTTA
1 AAATTTTA
18805220 TAAATTTTTA
1 -AAA-TTTTA
18805230 AAATTTTA
1 AAATTTTA
18805238 AAATTTTA
1 AAATTTTA
18805246 GATGTTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 13 0.54
9 6 0.25
10 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
AAATTTTA
Found at i:18806114 original size:14 final size:14
Alignment explanation
Indices: 18806095--18806147 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
18806085 TTTAAATATA
18806095 AAAAATAAAAATTT
1 AAAAATAAAAATTT
* **
18806109 AAAAATATATTTTT
1 AAAAATAAAAATTT
18806123 AAAAAATAAAAATTAT
1 -AAAAATAAAAATT-T
*
18806139 GAAAATAAA
1 AAAAATAAA
18806148 TAAAAACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 11 0.37
15 18 0.60
16 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (14 bp):
AAAAATAAAAATTT
Found at i:18806166 original size:19 final size:18
Alignment explanation
Indices: 18806126--18806195 Score: 63
Period size: 19 Copynumber: 3.6 Consensus size: 18
18806116 TATTTTTAAA
18806126 AAATAAAAATTATGAAAA-T
1 AAATAAAAATT-T-AAAATT
18806145 AAATAAAAACTTTAAAATT
1 AAATAAAAA-TTTAAAATT
18806164 AAA-AAAATATTTTTAAAATAT
1 AAATAAAA-A--TTTAAAAT-T
18806185 AAATAAAAATT
1 AAATAAAAATT
18806196 CCAAAATTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
18 8 0.18
19 17 0.39
20 10 0.23
21 5 0.11
22 4 0.09
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (18 bp):
AAATAAAAATTTAAAATT
Found at i:18806180 original size:20 final size:19
Alignment explanation
Indices: 18806102--18806195 Score: 61
Period size: 18 Copynumber: 4.8 Consensus size: 19
18806092 ATAAAAAATA
*
18806102 AAAATTTAAAAATATATTTTT
1 AAAA-TTAAAAA-AAATTTTT
* * *
18806123 AAAA--AATAAAAATTATG
1 AAAATTAAAAAAAATTTTT
*
18806140 AAAA-TAAATAAAAA-CTTT
1 AAAATTAAA-AAAAATTTTT
18806158 AAAATTAAAAAAATATTTTT
1 AAAATTAAAAAAA-ATTTTT
18806178 AAAATATAAATAAAAATT
1 AAAAT-TAAA-AAAAATT
18806196 CCAAAATTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
17 9 0.16
18 15 0.26
19 10 0.18
20 8 0.14
21 11 0.19
22 4 0.07
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (19 bp):
AAAATTAAAAAAAATTTTT
Found at i:18807742 original size:7 final size:7
Alignment explanation
Indices: 18807730--18807763 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
18807720 TGCCACATTA
18807730 TAAAAAT
1 TAAAAAT
18807737 TAAAAAT
1 TAAAAAT
18807744 TAAAAAT
1 TAAAAAT
18807751 TAAAAAT
1 TAAAAAT
18807758 TAAAAA
1 TAAAAA
18807764 AAATATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAAAAT
Done.