Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 61 of 185
Found at i:19044254 original size:79 final size:81
Alignment explanation
Indices: 19044118--19044302 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
19044108 TTGAATGATG
*
19044118 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
19044182 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
19044197 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
19044259 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
19044277 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
19044303 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:19044316 original size:40 final size:40
Alignment explanation
Indices: 19044119--19044302 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
19044109 TGAATGATGT
* * * *
19044119 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
19044159 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
19044199 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
19044237 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
19044278 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
19044303 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:19044324 original size:79 final size:79
Alignment explanation
Indices: 19044119--19044335 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
19044109 TGAATGATGT
** * * * **
19044119 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
19044182 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
19044199 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
19044264 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
19044278 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
19044336 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:19059560 original size:24 final size:24
Alignment explanation
Indices: 19059528--19059577 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
19059518 AAGATAGAAC
*
19059528 TTACAATGTATATTAATATATTTT
1 TTACAATGTATACTAATATATTTT
19059552 TTACAATGTATACTAATATATTTT
1 TTACAATGTATACTAATATATTTT
19059576 TT
1 TT
19059578 CTTTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (24 bp):
TTACAATGTATACTAATATATTTT
Found at i:19067041 original size:17 final size:17
Alignment explanation
Indices: 19066981--19067043 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
19066971 TTATTATGCG
*
19066981 AAAATAAAAA-ATTCCT
1 AAAATAAAAATAATCCT
19066997 --AATAAAACATAATCCT
1 AAAATAAAA-ATAATCCT
*
19067013 AAAATATTAAATAA-CCT
1 AAAATA-AAAATAATCCT
19067030 AAGAATAAAAATAA
1 AA-AATAAAAATAA
19067044 AATAAAGTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
14 7 0.18
15 1 0.03
16 5 0.13
17 11 0.29
18 12 0.32
19 2 0.05
ACGTcount: A:0.63, C:0.11, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAATAAAAATAATCCT
Found at i:19070158 original size:16 final size:17
Alignment explanation
Indices: 19070127--19070159 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
19070117 CATATTCTAG
19070127 CATATATCAAAACATAT
1 CATATATCAAAACATAT
*
19070144 CATATA-CAGAACATAT
1 CATATATCAAAACATAT
19070160 AACAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (17 bp):
CATATATCAAAACATAT
Found at i:19071675 original size:42 final size:43
Alignment explanation
Indices: 19071577--19071687 Score: 129
Period size: 42 Copynumber: 2.6 Consensus size: 43
19071567 CTCGTACAAG
* *
19071577 GCCAACGTCCCAGAC-GTGGTCTTACTTGGAAACAAATATCGAT
1 GCCAATGTCCCAGACAG-GGTCTTACATGGAAACAAATATCGAT
* * *
19071620 GTCACTGTCCCAGACAGGGTCTTACAT-GAAATCATATA-CGAT
1 GCCAATGTCCCAGACAGGGTCTTACATGGAAA-CAAATATCGAT
*
19071662 GCCAATGTCCCAGACATGGTCTTACA
1 GCCAATGTCCCAGACAGGGTCTTACA
19071688 CGTAAGTCTC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 31 0.53
43 26 0.45
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
GCCAATGTCCCAGACAGGGTCTTACATGGAAACAAATATCGAT
Found at i:19079598 original size:42 final size:43
Alignment explanation
Indices: 19079516--19079625 Score: 98
Period size: 42 Copynumber: 2.6 Consensus size: 43
19079506 TCTTACTTGT
* * * * *
19079516 AATCAAATATCGATGCCATTGTCCGAGACAGGGTCTTACACGA
1 AATCAAATATCGATGCCAATGTCCCAAACAGAGTCCTACACGA
* *
19079559 AATCATATAT-GATGCCAATGTCCCAAACATAGTCCTACACGTA
1 AATCAAATATCGATGCCAATGTCCCAAACAGAGTCCTACACG-A
* * *
19079602 AGTCTCAA-ATCGATGCCAAAGTCC
1 AATC-AAATATCGATGCCAATGTCC
19079626 TAGCGTGGGC
Statistics
Matches: 53, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
42 25 0.47
43 15 0.28
44 13 0.25
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATGTCCCAAACAGAGTCCTACACGA
Found at i:19083678 original size:11 final size:11
Alignment explanation
Indices: 19083650--19083691 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
19083640 CTTCATTCAT
*
19083650 CATCCCCCAAG
1 CATCCCTCAAG
19083661 CATCCCTCAAG
1 CATCCCTCAAG
*
19083672 CATCCCTCAAT
1 CATCCCTCAAG
*
19083683 CATTCCTCA
1 CATCCCTCA
19083692 TTCATTCTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.26, C:0.48, G:0.05, T:0.21
Consensus pattern (11 bp):
CATCCCTCAAG
Found at i:19090771 original size:319 final size:319
Alignment explanation
Indices: 19090192--19090830 Score: 1260
Period size: 319 Copynumber: 2.0 Consensus size: 319
19090182 AAATCTCAAT
19090192 AGAAAGGACCTTATACCATCTACTGAGTTTATCCTTATGGAGCTATTAAATTATACAACAATTAC
1 AGAAAGGACCTTATACCATCTACTGAGTTTATCCTTATGGAGCTATTAAATTATACAACAATTAC
19090257 AGAGGTACGTTTAAAGTTAATGGTCAACGTCTCAAACACTACTAGGATGGTGAAGTTGAGCGAGT
66 AGAGGTACGTTTAAAGTTAATGGTCAACGTCTCAAACACTACTAGGATGGTGAAGTTGAGCGAGT
19090322 TAAATCCTTGCTCAAATTAACAAACCTTTTATTTTTCCTGAACTCATTGTGTAAATAAATAAATA
131 TAAATCCTTGCTCAAATTAACAAACCTTTTATTTTTCCTGAACTCATTGTGTAAATAAATAAATA
*
19090387 ATTAGAACTTATTTTCTTAACTTATTACATTTAACTAATTCTGTCTAAGGATATTGGAACTTAAG
196 ATTAGAACTTATTTTCTTAACTTATTACATTTAACTAATTCTGTATAAGGATATTGGAACTTAAG
19090452 CAGGACCACTGTGACCCCTCCAACCTTTCCTGGGAATTAATTTAATGTAATTTGTTAAG
261 CAGGACCACTGTGACCCCTCCAACCTTTCCTGGGAATTAATTTAATGTAATTTGTTAAG
19090511 AGAAAGGACCTTATACCATCTACTGAGTTTATCCTTATGGAGCTATTAAATTATACAACAATTAC
1 AGAAAGGACCTTATACCATCTACTGAGTTTATCCTTATGGAGCTATTAAATTATACAACAATTAC
19090576 AGAGGTACGTTTAAAGTTAATGGTCAACGTCTCAAACACTACTAGGATGGTGAAGTTGAGCGAGT
66 AGAGGTACGTTTAAAGTTAATGGTCAACGTCTCAAACACTACTAGGATGGTGAAGTTGAGCGAGT
*
19090641 TGAATCCTTGCTCAAATTAACAAACCTTTTATTTTTCCTGAACTCATTGTGTAAATAAATAAATA
131 TAAATCCTTGCTCAAATTAACAAACCTTTTATTTTTCCTGAACTCATTGTGTAAATAAATAAATA
19090706 ATTAGAACTTATTTTCTTAACTTATTACATTTAACTAATTCTGTATAAGGATATTGGAACTTAAG
196 ATTAGAACTTATTTTCTTAACTTATTACATTTAACTAATTCTGTATAAGGATATTGGAACTTAAG
19090771 CAGGACCACTGTGACCCCTCCAACCTTTCCTGGGAATTAATTTAATGTAATTTGTTAAG
261 CAGGACCACTGTGACCCCTCCAACCTTTCCTGGGAATTAATTTAATGTAATTTGTTAAG
19090830 A
1 A
19090831 AAAAAATTTC
Statistics
Matches: 318, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
319 318 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (319 bp):
AGAAAGGACCTTATACCATCTACTGAGTTTATCCTTATGGAGCTATTAAATTATACAACAATTAC
AGAGGTACGTTTAAAGTTAATGGTCAACGTCTCAAACACTACTAGGATGGTGAAGTTGAGCGAGT
TAAATCCTTGCTCAAATTAACAAACCTTTTATTTTTCCTGAACTCATTGTGTAAATAAATAAATA
ATTAGAACTTATTTTCTTAACTTATTACATTTAACTAATTCTGTATAAGGATATTGGAACTTAAG
CAGGACCACTGTGACCCCTCCAACCTTTCCTGGGAATTAATTTAATGTAATTTGTTAAG
Found at i:19109925 original size:21 final size:21
Alignment explanation
Indices: 19109901--19109968 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
19109891 ACTCATATGA
19109901 GTTTCAGTTTAACCCTTTTGG
1 GTTTCAGTTTAACCCTTTTGG
* * *
19109922 GTTTCAGTTCAGCTCTTTTGAG
1 GTTTCAGTTTAACCCTTTTG-G
*
19109944 CTTT-AGTTTAA-CCTTTATGG
1 GTTTCAGTTTAACCCTTT-TGG
19109964 GTTTC
1 GTTTC
19109969 CATTTAGCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
20 8 0.22
21 24 0.67
22 4 0.11
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.49
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTTTTGG
Found at i:19110023 original size:21 final size:21
Alignment explanation
Indices: 19109962--19110023 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
19109952 TAACCTTTAT
* *
19109962 GGGTTTCCATTTAGCACTTAT
1 GGGTTTCCGTTTAGCACTTAC
* * * *
19109983 GAGCTTCCGTTTAACCCTTAC
1 GGGTTTCCGTTTAGCACTTAC
*
19110004 GGGTTTTCGTTTAGCACTTA
1 GGGTTTCCGTTTAGCACTTA
19110024 TGTGCTTCTG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (21 bp):
GGGTTTCCGTTTAGCACTTAC
Found at i:19110031 original size:42 final size:42
Alignment explanation
Indices: 19109896--19110031 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 42
19109886 ACTTAACTCA
* * ** * *
19109896 TATGAGTTTCAGTTTAACCCTTTTGGGTTT-CAGTTCAGCTCT
1 TATGAGCTTCCGTTTAACCCTTACGGGTTTCCA-TTTAGCACT
* ** * *
19109938 TTTGAGCTTTAGTTTAACCTTTATGGGTTTCCATTTAGCACT
1 TATGAGCTTCCGTTTAACCCTTACGGGTTTCCATTTAGCACT
* *
19109980 TATGAGCTTCCGTTTAACCCTTACGGGTTTTCGTTTAGCACT
1 TATGAGCTTCCGTTTAACCCTTACGGGTTTCCATTTAGCACT
*
19110022 TATGTGCTTC
1 TATGAGCTTC
19110032 TGTGCAGCCT
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 76 0.97
43 2 0.03
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (42 bp):
TATGAGCTTCCGTTTAACCCTTACGGGTTTCCATTTAGCACT
Found at i:19110898 original size:13 final size:13
Alignment explanation
Indices: 19110880--19110904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19110870 GCCTAGCACA
19110880 TGGTCGTGTGACT
1 TGGTCGTGTGACT
19110893 TGGTCGTGTGAC
1 TGGTCGTGTGAC
19110905 CCTTGCACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.40, T:0.36
Consensus pattern (13 bp):
TGGTCGTGTGACT
Found at i:19114520 original size:18 final size:17
Alignment explanation
Indices: 19114500--19114533 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
19114490 CATTTTTGGA
*
19114500 AAAACCTTTATTTTCGT
1 AAAACCTTGATTTTCGT
19114517 AAAACCTTGATTTTCGT
1 AAAACCTTGATTTTCGT
19114534 CAAATGCCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (17 bp):
AAAACCTTGATTTTCGT
Found at i:19122255 original size:27 final size:27
Alignment explanation
Indices: 19122131--19122249 Score: 98
Period size: 27 Copynumber: 4.4 Consensus size: 27
19122121 AAAGGTTGTT
*
19122131 AAATGACAGTAATACCCCCA-TAAGGTA
1 AAATGACCGTAATA-CCCCAGTAAGGTA
* * * *
19122158 AAATGACTGAAATACCCCTGTAGGGT-
1 AAATGACCGTAATACCCCAGTAAGGTA
* * *** *
19122184 AAATGATCGTAATGCCATTGTAGGGTA
1 AAATGACCGTAATACCCCAGTAAGGTA
**
19122211 AAATGTTCGTAATACCCCAGTAAGGTA
1 AAATGACCGTAATACCCCAGTAAGGTA
19122238 AAATGACCGTAA
1 AAATGACCGTAA
19122250 CGCCCCTAGA
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 24 0.33
27 48 0.67
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATGACCGTAATACCCCAGTAAGGTA
Found at i:19122602 original size:21 final size:21
Alignment explanation
Indices: 19122561--19122602 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
19122551 TATCCCCACA
* *
19122561 TGGTGTGTTGGTTGGTATGGG
1 TGGTGTATTGGTTGATATGGG
19122582 TGGTGTATTGGTTTGAT-TGGG
1 TGGTGTATTGG-TTGATATGGG
19122603 CTGGATTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.07, C:0.00, G:0.48, T:0.45
Consensus pattern (21 bp):
TGGTGTATTGGTTGATATGGG
Found at i:19126700 original size:14 final size:14
Alignment explanation
Indices: 19126672--19126710 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
19126662 CTAGAAAAAG
*
19126672 AAACAATTTTCCAA
1 AAACCATTTTCCAA
* *
19126686 AAATCATTTTTCAA
1 AAACCATTTTCCAA
19126700 AAACCATTTTC
1 AAACCATTTTC
19126711 GGTCAAACAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACCATTTTCCAA
Found at i:19129620 original size:18 final size:19
Alignment explanation
Indices: 19129583--19129621 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
19129573 ATTAAAGAAT
*
19129583 AATTTAATTTTAGTGTTAA
1 AATTTAATTTTAGTGGTAA
*
19129602 AATTT-ATTTTTGTGGTAA
1 AATTTAATTTTAGTGGTAA
19129620 AA
1 AA
19129622 ATTTGACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (19 bp):
AATTTAATTTTAGTGGTAA
Found at i:19130204 original size:15 final size:17
Alignment explanation
Indices: 19130183--19130222 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
19130173 TAATTTTTTA
19130183 AAAATTATAAAAAT-AT
1 AAAATTATAAAAATAAT
*
19130199 -AAATTATTAAAATAAT
1 AAAATTATAAAAATAAT
19130215 AAAATTAT
1 AAAATTAT
19130223 TTTTTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATTATAAAAATAAT
Found at i:19135244 original size:16 final size:16
Alignment explanation
Indices: 19135223--19135254 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
19135213 AAATTGGTTG
*
19135223 ATTTTTAGTTTAATTA
1 ATTTTTAGGTTAATTA
19135239 ATTTTTAGGTTAATTA
1 ATTTTTAGGTTAATTA
19135255 GATGAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
ATTTTTAGGTTAATTA
Found at i:19140759 original size:27 final size:27
Alignment explanation
Indices: 19140647--19140774 Score: 96
Period size: 27 Copynumber: 4.7 Consensus size: 27
19140637 AATCCATTGG
** * *
19140647 GACAGTAAATGTGGGGTAGTCCACTAG
1 GACAGTAAACATGGGGTAGTTCACTAA
* *
19140674 GACAGTAAACATGGGGTAGCTCA-TCGA
1 GACAGTAAACATGGGGTAGTTCACT-AA
* * ** * *
19140701 TACAATAAACGCGGGGTAATTCACTGA
1 GACAGTAAACATGGGGTAGTTCACTAA
* *
19140728 TACAGTAAACATGGGGTAGTTCGCTAA
1 GACAGTAAACATGGGGTAGTTCACTAA
* *
19140755 GACAGTAAACACGAGGTAGT
1 GACAGTAAACATGGGGTAGT
19140775 CTATTGGGAC
Statistics
Matches: 78, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
26 1 0.01
27 76 0.97
28 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.21
Consensus pattern (27 bp):
GACAGTAAACATGGGGTAGTTCACTAA
Found at i:19144196 original size:6 final size:6
Alignment explanation
Indices: 19144185--19144221 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
19144175 GTGATGATGT
19144185 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA A
19144222 TGGTTTCGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:19165146 original size:50 final size:50
Alignment explanation
Indices: 19165012--19165337 Score: 327
Period size: 50 Copynumber: 6.6 Consensus size: 50
19165002 CGATCTCATA
* * * * *
19165012 TAAGACCATGTCTGGGACATGGCATCGACATCGATATGTGA-G--CCAGTG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA-TG
* * * * *
19165060 CAAGACCATGTCTGGGACATGGCGTTGCCACAGAGATGAGAAGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
*
19165110 TAAGACCATG-CTTGGGACATGGCATTGGCACCGAGATGAGAGGTCTCATG
1 TAAGACCATGTC-TGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * * * * *
19165160 TAAGACCATCTCTGGGACATTGCGTTGGCACCAAGATGAGAGGTACCACG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * * * * *
19165210 TAAAACCATGTCTAGGACATGGCGTTGGCACCGGGATGATAGGTCCCCTG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * * * **
19165260 TAAGACCATGTCTGGGACATGACATGGGCACCGATATAAGATCTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* *
19165310 TAAGACCATATCTGGGATATGGCATTGG
1 TAAGACCATGTCTGGGACATGGCATTGG
19165338 TAGTACAGGA
Statistics
Matches: 226, Mismatches: 47, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
48 33 0.15
49 2 0.01
50 187 0.83
51 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
Found at i:19166940 original size:23 final size:23
Alignment explanation
Indices: 19166902--19166952 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
19166892 GGGAGAGAAA
*
19166902 TGTAATATCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
19166925 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
19166948 AGTAA
1 TGTAA
19166953 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:19171083 original size:47 final size:46
Alignment explanation
Indices: 19171031--19171322 Score: 182
Period size: 49 Copynumber: 6.2 Consensus size: 46
19171021 TGGTTAGACC
* *
19171031 ATGGCAACATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCT
1 ATGGCATCATGTGATATGTGA-TTCCGTGTAAGACCATAGCTGGGCT
* * * * * *
19171078 ATGGCATCGGTGTGATGTGATTATGAGTTCCGTATAAAACCATATCTGGGAT
1 ATGGCATC-ATGTGA--T-A-TGTGA-TTCCGTGTAAGACCATAGCTGGGCT
** * * * * * *
19171130 ATGGCATTGGTGTGATATGTGCTACTGTGTAAAACCATATCTGGGAT
1 ATGGCA-TCATGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCT
*
19171177 ATGGCATCA---G---TGTGATTGCGTGTAAGACCATAGCTGGGCT
1 ATGGCATCATGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCT
* * *
19171217 ACGGCATCAGTAAGTGATACGTGATTCCGTGTAAGACCATAGCTGGACT
1 ATGGCATCA-T--GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCT
* * * ** *
19171266 ATGTCATTGCTATGTGTTATGTGATTACGTGTAAGACCATAATTGGACT
1 ATGGCA-T-C-ATGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCT
19171315 ATGGCATC
1 ATGGCATC
19171323 GAGAAAACGA
Statistics
Matches: 193, Mismatches: 34, Indels: 36
0.73 0.13 0.14
Matches are distributed among these distances:
40 31 0.16
43 1 0.01
46 2 0.01
47 36 0.19
48 9 0.05
49 68 0.35
50 3 0.02
51 3 0.02
52 39 0.20
53 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (46 bp):
ATGGCATCATGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCT
Found at i:19171120 original size:52 final size:53
Alignment explanation
Indices: 19171039--19171145 Score: 153
Period size: 52 Copynumber: 2.0 Consensus size: 53
19171029 CCATGGCAAC
* * * *
19171039 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATATGAGTTCCGTATAAAACCATAGCTGGGATATGGCATCGGTGTG
* *
19171092 ATGTGAT-TATGAGTTCCGTATAAAACCATATCTGGGATATGGCATTGGTGTG
1 ATGTGATATATGAGTTCCGTATAAAACCATAGCTGGGATATGGCATCGGTGTG
19171144 AT
1 AT
19171146 ATGTGCTACT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
52 41 0.85
53 7 0.15
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (53 bp):
ATGTGATATATGAGTTCCGTATAAAACCATAGCTGGGATATGGCATCGGTGTG
Found at i:19176727 original size:16 final size:18
Alignment explanation
Indices: 19176695--19176727 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
19176685 TACGAATTGC
19176695 ATAAAATATTACCTAAAA
1 ATAAAATATTACCTAAAA
19176713 ATAAAAT-TT-CCTAAA
1 ATAAAATATTACCTAAA
19176728 TATTCATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (18 bp):
ATAAAATATTACCTAAAA
Found at i:19176969 original size:15 final size:15
Alignment explanation
Indices: 19176949--19176978 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
19176939 TGAATGTAAT
19176949 TCACTCATGAAGCTA
1 TCACTCATGAAGCTA
19176964 TCACTCATGAAGCTA
1 TCACTCATGAAGCTA
19176979 AGGCTTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (15 bp):
TCACTCATGAAGCTA
Found at i:19184896 original size:47 final size:47
Alignment explanation
Indices: 19184685--19185100 Score: 681
Period size: 47 Copynumber: 8.7 Consensus size: 47
19184675 TTAGGATTCT
*
19184685 ATGTGATGAATGTGAAAGTGTATATATATGTTATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
19184734 ATGTGATGAATGTGAAAGTGTATATATATGTTATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19184783 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19184831 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19184878 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19184925 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19184972 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
19185019 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
19185066 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
19185101 TCCCGAAGGG
Statistics
Matches: 355, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
46 22 0.06
47 217 0.61
48 24 0.07
49 92 0.26
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:19186918 original size:40 final size:40
Alignment explanation
Indices: 19186474--19186906 Score: 767
Period size: 40 Copynumber: 10.8 Consensus size: 40
19186464 TGAGAATTGA
*
19186474 TAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
*
19186514 TAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
*
19186554 GAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
19186594 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
19186634 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
19186674 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
19186714 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
19186754 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
19186794 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
* * **
19186834 TAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGC
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
* * * *
19186874 TGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
19186907 ATCATGCTGG
Statistics
Matches: 378, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 378 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
TAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
Found at i:19188467 original size:85 final size:85
Alignment explanation
Indices: 19188324--19188502 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
19188314 GGCCGGCCAT
19188324 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
19188389 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
19188409 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
19188474 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
19188494 GGGCATGGG
1 GAGCATGGG
19188503 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:19190660 original size:47 final size:47
Alignment explanation
Indices: 19190597--19191016 Score: 804
Period size: 47 Copynumber: 8.9 Consensus size: 47
19190587 ATGATAGTAT
19190597 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
19190644 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
19190691 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
19190738 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
19190785 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
19190832 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
19190879 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
19190926 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAA--G--TGTATATATGTGATAA
19190977 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
19191017 ATATGTGATA
Statistics
Matches: 369, Mismatches: 0, Indels: 8
0.98 0.00 0.02
Matches are distributed among these distances:
47 321 0.87
49 2 0.01
51 46 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:19203355 original size:22 final size:22
Alignment explanation
Indices: 19203327--19203368 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
19203317 ATCATTAGTC
19203327 GGTGATCG-TTTGGTAAATTGTT
1 GGTGATCGATTT-GTAAATTGTT
19203349 GGTGATCGATTTGTAAATTG
1 GGTGATCGATTTGTAAATTG
19203369 ATTTCTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.21, C:0.05, G:0.31, T:0.43
Consensus pattern (22 bp):
GGTGATCGATTTGTAAATTGTT
Found at i:19203494 original size:10 final size:10
Alignment explanation
Indices: 19203479--19203504 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
19203469 TTTTTAATTT
19203479 TAAAATTTTA
1 TAAAATTTTA
19203489 TAAAATTTTA
1 TAAAATTTTA
19203499 TAAAAT
1 TAAAAT
19203505 AAAAGACAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TAAAATTTTA
Found at i:19211026 original size:62 final size:62
Alignment explanation
Indices: 19210951--19211072 Score: 199
Period size: 62 Copynumber: 2.0 Consensus size: 62
19210941 ATTATGAGAG
* *
19210951 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATGAGAGATCCCATGTAAA
1 GTCCCATGTAAGACCATGTCTGGAACATGGCGTTGCCACCGAGATAAGAGATCCCATGTAAA
* * *
19211013 GTCCCATGTAAGACCATGTCTGGAACATGGCGTTGGCACCGAGATAAGAGGTCTCATGTA
1 GTCCCATGTAAGACCATGTCTGGAACATGGCGTTGCCACCGAGATAAGAGATCCCATGTA
19211073 GGACCATGTC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (62 bp):
GTCCCATGTAAGACCATGTCTGGAACATGGCGTTGCCACCGAGATAAGAGATCCCATGTAAA
Found at i:19211072 original size:50 final size:49
Alignment explanation
Indices: 19211013--19211179 Score: 181
Period size: 50 Copynumber: 3.3 Consensus size: 49
19211003 CCCATGTAAA
* *
19211013 GTCCCATGTAAGACCATGTCTGGAACATGGCGTTGGCACCGAGATAAGAG
1 GTCCCATGTAAGACCATGTCTGG-ACATGGCGTTGGCACCTAGATGAGAG
* * * * *
19211063 GTCTCATGTAGGACCATGTCTTGGAGATGTCGTTAGCACCTAGATGAGAG
1 GTCCCATGTAAGACCATGTC-TGGACATGGCGTTGGCACCTAGATGAGAG
** * * * *
19211113 GTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAA
1 GTCCCATGTAAGACCATGTCT-GGACATGGCGTTGGCACCTAGATGAGAG
*
19211163 CTCCCATGTAAGACCAT
1 GTCCCATGTAAGACCAT
19211180 ATTTGGGATA
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 1 0.01
50 90 0.96
51 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCCCATGTAAGACCATGTCTGGACATGGCGTTGGCACCTAGATGAGAG
Found at i:19211187 original size:50 final size:49
Alignment explanation
Indices: 19211120--19211239 Score: 143
Period size: 49 Copynumber: 2.4 Consensus size: 49
19211110 GAGGTCCCCC
* *
19211120 GTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC-TCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCA-CTACAAGA-AACATCCCAT
* * * * *
19211170 GTAAGACCATATTTGGGATATGGCATTGGCAGTACAAGAAACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACTACAAGAAACATCCCAT
*
19211219 GTAAGACTATGTCTGGGACAT
1 GTAAGACCATGTCTGGGACAT
19211240 ATCTTTGGCA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 3 0.05
49 28 0.48
50 27 0.47
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACTACAAGAAACATCCCAT
Found at i:19211236 original size:49 final size:50
Alignment explanation
Indices: 19211014--19211239 Score: 152
Period size: 50 Copynumber: 4.5 Consensus size: 50
19211004 CCATGTAAAG
* * * * * **
19211014 TCCCATGTAAGACCATGTCTGGAACATGGCGTTGGCACCGAGATA-AGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACA-AGAGAAC
* * * * * * ** * * **
19211064 TCTCATGTAGGACCATGTCTTGGAGATGTCGTTAGCACCTAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
** * *
19211114 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
* * * * *
19211164 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA-GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
*
19211212 ATCCCATGTAAGACTATGTCTGGGACAT
1 -TCCCATGTAAGACCATGTCTGGGACAT
19211240 ATCTTTGGCA
Statistics
Matches: 139, Mismatches: 35, Indels: 5
0.78 0.20 0.03
Matches are distributed among these distances:
48 3 0.02
49 28 0.20
50 108 0.78
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
Found at i:19215364 original size:15 final size:15
Alignment explanation
Indices: 19215344--19215373 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19215334 ACCATGATAA
*
19215344 ATTTGTGAAATGTTG
1 ATTTGTAAAATGTTG
19215359 ATTTGTAAAATGTTG
1 ATTTGTAAAATGTTG
19215374 TATAGGCCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (15 bp):
ATTTGTAAAATGTTG
Found at i:19221865 original size:25 final size:25
Alignment explanation
Indices: 19221831--19222073 Score: 204
Period size: 25 Copynumber: 9.7 Consensus size: 25
19221821 AAATAACATG
* * **
19221831 CCACGAAGGCTTTCCTGAGAATTTT
1 CCACAAAGGCTTTCCAGAGAATTCA
** * *
19221856 CCACAAAGGCTTTTAAGAGGATTCG
1 CCACAAAGGCTTTCCAGAGAATTCA
** *
19221881 CTGCAAAGGCTTTCCAGAGAATTTA
1 CCACAAAGGCTTTCCAGAGAATTCA
* * *
19221906 CCACAAAGCCTTTCTAGAGGATTCA
1 CCACAAAGGCTTTCCAGAGAATTCA
19221931 CCACAAAGGCTTTCCAGAGAATTCA
1 CCACAAAGGCTTTCCAGAGAATTCA
* *
19221956 CCACAAAGGCTTTTCAGA-AGATTCG
1 CCACAAAGGCTTTCCAGAGA-ATTCA
* * * **
19221981 CCACAAAGGATTTCCAAATAATTTT
1 CCACAAAGGCTTTCCAGAGAATTCA
19222006 CCACAAAGGCTGTT-CAGA-AGATTCA
1 CCACAAAGGCT-TTCCAGAGA-ATTCA
**
19222031 TGACAAAGGCTTTCCAGAGAATTCA
1 CCACAAAGGCTTTCCAGAGAATTCA
* * *
19222056 CCGCAAAGACTTTTCAGA
1 CCACAAAGGCTTTCCAGA
19222074 CATCTGTGTT
Statistics
Matches: 171, Mismatches: 41, Indels: 12
0.76 0.18 0.05
Matches are distributed among these distances:
24 4 0.02
25 163 0.95
26 4 0.02
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (25 bp):
CCACAAAGGCTTTCCAGAGAATTCA
Found at i:19221911 original size:50 final size:50
Alignment explanation
Indices: 19221830--19222073 Score: 274
Period size: 50 Copynumber: 4.9 Consensus size: 50
19221820 CAAATAACAT
* * * * *
19221830 GCCACGAAGGCTTTCCTGAGAATTTTCCACAAAGGCTTTTAAGAGGATTC
1 GCCACAAAGGCTTTCCAGAGAATTTACCACAAAGGCTTTTCAGAAGATTC
** * *
19221880 GCTGCAAAGGCTTTCCAGAGAATTTACCACAAA-GCCTTTCTAGAGGATTC
1 GCCACAAAGGCTTTCCAGAGAATTTACCACAAAGGCTTTTC-AGAAGATTC
* *
19221930 ACCACAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTCAGAAGATTC
1 GCCACAAAGGCTTTCCAGAGAATTTACCACAAAGGCTTTTCAGAAGATTC
* * * * *
19221980 GCCACAAAGGATTTCCAAATAATTTTCCACAAAGGCTGTTCAGAAGATTC
1 GCCACAAAGGCTTTCCAGAGAATTTACCACAAAGGCTTTTCAGAAGATTC
*** * * *
19222030 ATGACAAAGGCTTTCCAGAGAATTCACCGCAAAGACTTTTCAGA
1 GCCACAAAGGCTTTCCAGAGAATTTACCACAAAGGCTTTTCAGA
19222074 CATCTGTGTT
Statistics
Matches: 161, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 5 0.03
50 150 0.93
51 6 0.04
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (50 bp):
GCCACAAAGGCTTTCCAGAGAATTTACCACAAAGGCTTTTCAGAAGATTC
Found at i:19222010 original size:100 final size:100
Alignment explanation
Indices: 19221831--19222073 Score: 308
Period size: 100 Copynumber: 2.4 Consensus size: 100
19221821 AAATAACATG
* * ** * * ** *
19221831 CCACGAAGGCTTTCCTGAGAATTTTCCACAAAGGCTTTTAAGAGGATTCGCTGCAAAGGCTTTCC
1 CCACAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCC
* *
19221896 AGAGAATTTACCACAAAGCCT-TTCTAGAGGATTCA
66 AAAGAATTTACCACAAAGCCTGTTC-AGAAGATTCA
19221931 CCACAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCC
1 CCACAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCC
* * *
19221996 AAATAATTTTCCACAAAGGCTGTTCAGAAGATTCA
66 AAAGAATTTACCACAAAGCCTGTTCAGAAGATTCA
** * *
19222031 TGACAAAGGCTTTCCAGAGAATTCACCGCAAAGACTTTTCAGA
1 CCACAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTCAGA
19222074 CATCTGTGTT
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
100 121 0.98
101 3 0.02
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (100 bp):
CCACAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCC
AAAGAATTTACCACAAAGCCTGTTCAGAAGATTCA
Found at i:19236615 original size:27 final size:27
Alignment explanation
Indices: 19236585--19236638 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
19236575 ATATATAATT
19236585 ATTA-TAAAATAATTAAATTTTACTTAA
1 ATTATTAAAAT-ATTAAATTTTACTTAA
* * *
19236612 ATTATTAACATGTTGAATTTTACTTAA
1 ATTATTAAAATATTAAATTTTACTTAA
19236639 TTTTATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTATTAAAATATTAAATTTTACTTAA
Found at i:19238621 original size:53 final size:54
Alignment explanation
Indices: 19238547--19238804 Score: 308
Period size: 53 Copynumber: 4.8 Consensus size: 54
19238537 AAATACCCTA
* * *
19238547 ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCC
1 ATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
** * * *
19238601 ATA-AATAAAATGACTAAAATACCCTCATATGGTAAAATGA-TCGAAATATCCCT
1 ATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACT-GAAATATCCCC
* * * * * * *
19238654 ATCGGGTAAAATAACTTAATTACCCCTATAGGGTAAAATGACCGAATTATCCCC
1 ATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
* * *
19238708 ATAGGGTAAAATGACTGAATTACCCCCATAAGGT-AAATGACTGAAATATCCCC
1 ATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
19238761 ATAGGGTAAAATGA-TCAAAATACCCCCATAGGGTAAAATGACTG
1 ATAGGGTAAAATGACT-AAAATACCCCCATAGGGTAAAATGACTG
19238805 TTATACCTCT
Statistics
Matches: 169, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.01
53 88 0.52
54 79 0.47
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.23
Consensus pattern (54 bp):
ATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
Found at i:19238663 original size:80 final size:81
Alignment explanation
Indices: 19238530--19238804 Score: 333
Period size: 80 Copynumber: 3.4 Consensus size: 81
19238520 TTACATTGTT
*
19238530 ATGACCAAAATACCCTAATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAAT
1 ATGACCAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAAT
**
19238595 ACCCCCATA-AATAAA
66 ACCCCCATAGGGTAAA
* * * * * * *
19238610 ATGACTAAAATACCCTCATATGGTAAAATGA-TCGAAATATCCCTATCGGGTAAAATAACTTAAT
1 ATGACCAAAATACCCTCATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATAACTGAAA
*
19238674 TACCCCTATAGGGTAAA
65 TACCCCCATAGGGTAAA
* * * * *
19238691 ATGACCGAATTATCCC-CATAGGGTAAAATGACTGAATTACCCCCATAAGGT-AAATGACTGAAA
1 ATGACCAAAATA-CCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAA
*
19238754 TATCCCCATAGGGTAAA
65 TACCCCCATAGGGTAAA
* *
19238771 ATGATCAAAATACCCCCATAGGGTAAAATGACTG
1 ATGACCAAAATACCCTCATAGGGTAAAATGACTG
19238805 TTATACCTCT
Statistics
Matches: 162, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
79 4 0.02
80 114 0.70
81 40 0.25
82 4 0.02
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (81 bp):
ATGACCAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAAT
ACCCCCATAGGGTAAA
Found at i:19238782 original size:134 final size:135
Alignment explanation
Indices: 19238542--19238799 Score: 369
Period size: 134 Copynumber: 1.9 Consensus size: 135
19238532 GACCAAAATA
*
19238542 CCCTAATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAAAT
1 CCCTAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAAAT
* * * * *
19238607 AAAATGACTAAAATACCCTCATATGGTAAAATGATCGAAATATCCCTATCGGGTAAAATAACTTA
66 AAAATGACTAAAATACCCTCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATAACTTA
19238672 ATTAC
131 ATTAC
* * * * *
19238677 CCCT-ATAGGGTAAAATGACCGAATTATCCCCATAGGGTAAAATGACTGAATTACCCCCATAAGG
1 CCCTAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAA-A
*
19238741 T-AAATGACTGAAATATCCC-CATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAAT
65 TAAAATGACTAAAATA-CCCTCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAAT
19238800 GACTGTTATA
Statistics
Matches: 109, Mismatches: 12, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
134 101 0.93
135 8 0.07
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (135 bp):
CCCTAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAAAT
AAAATGACTAAAATACCCTCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATAACTTA
ATTAC
Found at i:19238811 original size:27 final size:27
Alignment explanation
Indices: 19238537--19238804 Score: 292
Period size: 27 Copynumber: 10.0 Consensus size: 27
19238527 GTTATGACCA
**
19238537 AAATACCCTAATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
19238564 AAATACCCCCATAGGGTAAAATAACTG
1 AAATACCCCCATAGGGTAAAATGACTG
** *
19238591 AAATACCCCCATA-AATAAAATGACTA
1 AAATACCCCCATAGGGTAAAATGACTG
* *
19238617 AAATACCCTCATATGGTAAAATGA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* * * * *
19238644 AAATATCCCTATCGGGTAAAATAACTT
1 AAATACCCCCATAGGGTAAAATGACTG
* * *
19238671 AATTACCCCTATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
19238698 AATTATCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
19238725 AATTACCCCCATAAGGT-AAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
19238751 AAATATCCCCATAGGGTAAAATGA-TCA
1 AAATACCCCCATAGGGTAAAATGACT-G
19238778 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
19238805 TTATACCTCT
Statistics
Matches: 200, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
26 46 0.23
27 152 0.76
28 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:19239021 original size:26 final size:26
Alignment explanation
Indices: 19238967--19239021 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
19238957 TGGAGAAAGT
* * *
19238967 ATACTGTTAGTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTCGCTACG
*
19238993 ATACTGTTACTGGCAGCTTCGCTATG
1 ATACTGTTACTGGCAGCTTCGCTACG
19239019 ATA
1 ATA
19239022 TTGGTGTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTCGCTACG
Found at i:19241426 original size:27 final size:26
Alignment explanation
Indices: 19241396--19241795 Score: 381
Period size: 27 Copynumber: 14.9 Consensus size: 26
19241386 TGTTATAACT
*
19241396 GAAATACACCCATAGGGTAAAATGATC
1 GAAATACCCCCATAGGGTAAAATGA-C
*
19241423 GAAATACCCCCATAGGATAAAATGATC
1 GAAATACCCCCATAGGGTAAAATGA-C
*
19241450 GAAATACCCTCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGA-C
* * *
19241477 AAAATACCCCCATATGGTAAAATAAC
1 GAAATACCCCCATAGGGTAAAATGAC
** *
19241503 AGAAATACCCCTTTATGGTAAAATGACC
1 -GAAATACCCCCATAGGGTAAAATGA-C
* * *
19241531 GAATTACCCCCATAAGGTAAAACGACC
1 GAAATACCCCCATAGGGTAAAATGA-C
* *
19241558 GAATTACCCCCACAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGA-C
* *
19241585 GAATTACCCCCACAGGGTAAAATGAC
1 GAAATACCCCCATAGGGTAAAATGAC
* *
19241611 TAAAATACCCCCATTGGGTAAAATGATC
1 -GAAATACCCCCATAGGGTAAAATGA-C
** * * *
19241639 GAAATATACCTATCGGGTAAAATAAC
1 GAAATACCCCCATAGGGTAAAATGAC
* * *
19241665 TTAATTAGCCCCATAGGGTAAAATGAC
1 -GAAATACCCCCATAGGGTAAAATGAC
*
19241692 TACAATACCCCCATTA-GGTAAAATGAC
1 GA-AATACCCCCA-TAGGGTAAAATGAC
* *
19241719 TGAATTACCCCCATAAGGTAAAATGAC
1 -GAAATACCCCCATAGGGTAAAATGAC
*
19241746 AGAAATACCCCCATAGGGTAAAATGATT
1 -GAAATACCCCCATAGGGTAAAATGA-C
19241774 GAAATA-CCCCATAGGGTAAAAT
1 GAAATACCCCCATAGGGTAAAAT
19241796 AACTGTTATA
Statistics
Matches: 317, Mismatches: 46, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
26 23 0.07
27 289 0.91
28 5 0.02
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (26 bp):
GAAATACCCCCATAGGGTAAAATGAC
Found at i:19241999 original size:26 final size:26
Alignment explanation
Indices: 19241960--19242040 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
19241950 TGAAGGAAGT
* * *
19241960 ATACTTTTAGTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGTTGCG
* * *
19241986 ATACTGTTACTGGCAGCTTCGTTGCA
1 ATACTATTACTGGCAGCTTTGTTGCG
*
19242012 ATACTACTACTGGCAGCTTTGTTGCG
1 ATACTATTACTGGCAGCTTTGTTGCG
19242038 ATA
1 ATA
19242041 TTGGTGTGTT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGTTGCG
Found at i:19242184 original size:28 final size:28
Alignment explanation
Indices: 19242144--19242251 Score: 171
Period size: 28 Copynumber: 3.9 Consensus size: 28
19242134 ACTGTACCGA
* * *
19242144 TACTGCATTGGGCTAAGGCCCATAATGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
19242172 TACTATATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
19242200 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
19242228 TATTGTATTGGGCTAAGGCCCACA
1 TACTGTATTGGGCTAAGGCCCACA
19242252 CTGTACTATT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 74 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:19242279 original size:33 final size:33
Alignment explanation
Indices: 19242237--19242359 Score: 183
Period size: 33 Copynumber: 3.7 Consensus size: 33
19242227 TTATTGTATT
*
19242237 GGGCTAAGGCCCACACTGTACTATTTCTGAAAA
1 GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
*
19242270 GGGCTAAGGCCCACACTTTACTGTTTCTGAAAA
1 GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
*
19242303 GGGCTAAGGCCCACACTTTACTGTTTCTGAAAA
1 GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
* * *
19242336 GGACTTAGGCCCAGACTGTTACTG
1 GGGCTAAGGCCCACACTG-TACTG
19242360 CATGTTGTAT
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
33 78 0.94
34 5 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (33 bp):
GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
Found at i:19260214 original size:29 final size:29
Alignment explanation
Indices: 19260169--19260525 Score: 200
Period size: 29 Copynumber: 12.3 Consensus size: 29
19260159 ACGTATAGAT
* *
19260169 GACCATCGATTAATGAAAAGGGATAGTTTC
1 GACCATCGACT-ATGAAAAGGGATAGTGTC
* * *
19260199 GACTATCGACTATGAAAA-GGATGGTGAC
1 GACCATCGACTATGAAAAGGGATAGTGTC
* *
19260227 GACCATCAACTATGAAAAGGGATGGTGGT-
1 GACCATCGACTATGAAAAGGGATAGT-GTC
* * * *
19260256 AACCATCGAATATGAAAAGGGATAGTTTT
1 GACCATCGACTATGAAAAGGGATAGTGTC
* * *
19260285 GACTATCGACTATGAAAAGGGATGGTGAC
1 GACCATCGACTATGAAAAGGGATAGTGTC
** * * ** *
19260314 GACCATAAAGTATGAAAAGAGAGGGTGAC
1 GACCATCGACTATGAAAAGGGATAGTGTC
* * ** *
19260343 GACCATCAACTATGAAAAAGGAGGGTGAC
1 GACCATCGACTATGAAAAGGGATAGTGTC
* * * *
19260372 GACCATC-AATGAATGAAAATGGATGGTTTC
1 GACCATCGACT--ATGAAAAGGGATAGTGTC
* * * *
19260402 GACCAACGAATATGAAAAGGGATGGTGAC
1 GACCATCGACTATGAAAAGGGATAGTGTC
* * * *
19260431 GACCATCGAATATGTAAAGGGATGGTGAC
1 GACCATCGACTATGAAAAGGGATAGTGTC
* * * * * *
19260460 GATCATCAATTATGAAAATGAATGGTGAT-
1 GACCATCGACTATGAAAAGGGATAGTG-TC
** * *
19260489 GACCATCGAAAATGAAAAGGGATGGTTTC
1 GACCATCGACTATGAAAAGGGATAGTGTC
*
19260518 GGCCATCG
1 GACCATCG
19260526 TTTAGAACAC
Statistics
Matches: 263, Mismatches: 56, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
28 27 0.10
29 203 0.77
30 30 0.11
31 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.21
Consensus pattern (29 bp):
GACCATCGACTATGAAAAGGGATAGTGTC
Found at i:19260307 original size:58 final size:58
Alignment explanation
Indices: 19260181--19260524 Score: 327
Period size: 58 Copynumber: 5.9 Consensus size: 58
19260171 CCATCGATTA
* ** * * **
19260181 ATGAAAAGGGATAGTTTCGACTATCGACTATGAAAA-GGATGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCAACT
*** * * * *
19260238 ATGAAAAGGGATGGTGGTAACCATCGAATATGAAAAGGGATAGTTTTGACTATCGACT
1 ATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCAACT
* * * **
19260296 ATGAAAAGGGATGGTGACGACCAT-AAAGTATGAAAAGAGAGGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCGAA-TATGAAAAGGGATGGTTTCGACCATCAACT
* * * *
19260354 ATGAAAAAGGAGGGTGACGACCATC-AATGAATGAAAATGGATGGTTTCGACCAACGAA-T
1 ATGAAAAGGGATGGTGACGACCATCGAAT--ATGAAAAGGGATGGTTTCGACCATC-AACT
* ** * *
19260413 ATGAAAAGGGATGGTGACGACCATCGAATATGTAAAGGGATGGTGACGATCATCAATT
1 ATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCAACT
* * * * *
19260471 ATGAAAATGAATGGTGATGACCATCGAAAATGAAAAGGGATGGTTTCGGCCATC
1 ATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATC
19260525 GTTTAGAACA
Statistics
Matches: 229, Mismatches: 50, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
57 34 0.15
58 147 0.64
59 43 0.19
60 5 0.02
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21
Consensus pattern (58 bp):
ATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCAACT
Found at i:19260348 original size:87 final size:85
Alignment explanation
Indices: 19260169--19260514 Score: 306
Period size: 87 Copynumber: 4.0 Consensus size: 85
19260159 ACGTATAGAT
*
19260169 GACCATCGATTAATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGATGGTGACGACCATC
1 GACCATCGAAT-ATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGATGGTGACGACCAT-
* **
19260234 AACTATGAAAAGGGATGGTGGT
64 AAATATGAAAAGGGATGGTGAC
* *
19260256 AACCATCGAATATGAAAAGGGATAGTTTTGACTATCGACTATGAAAAGGGATGGTGACGACCATA
1 GACCATCGAATATGAAAAGGGATAGTTTCGACTATCGACTATGAAAA-GGATGGTGACGACCATA
* *
19260321 AAGTATGAAAAGAGAGGGTGAC
65 AA-TATGAAAAGGGATGGTGAC
* ** ** * * **
19260343 GACCATC-AACTATGAAAAAGGAGGGTGACGACCATC-AATGAATGAAAATGGATGGTTTCGACC
1 GACCATCGAA-TATGAAAAGGGATAGTTTCGACTATCGACT--ATGAAAA-GGATGGTGACGACC
19260406 A-ACGAATATGAAAAGGGATGGTGAC
62 ATA--AATATGAAAAGGGATGGTGAC
* * ** * * * *
19260431 GACCATCGAATATGTAAAGGGATGGTGACGA-TCATCAATTATGAAAATGAATGGTGATGACCAT
1 GACCATCGAATATGAAAAGGGATAGTTTCGACT-ATCGACTATGAAAA-GGATGGTGACGACCAT
19260495 CGAAA-ATGAAAAGGGATGGT
64 --AAATATGAAAAGGGATGGT
19260515 TTCGGCCATC
Statistics
Matches: 215, Mismatches: 31, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
86 41 0.19
87 100 0.47
88 67 0.31
89 6 0.03
90 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (85 bp):
GACCATCGAATATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGATGGTGACGACCATAA
ATATGAAAAGGGATGGTGAC
Found at i:19260524 original size:146 final size:146
Alignment explanation
Indices: 19260213--19260506 Score: 355
Period size: 146 Copynumber: 2.0 Consensus size: 146
19260203 ATCGACTATG
* * * * *
19260213 AAAAGGATGGTGACGACCATCAACT--ATGAAAAGGGATGGTGGT-AACCATCGAATATGAAAAG
1 AAAAGGAGGGTGACGACCATCAA-TGAATGAAAATGGATGGT-TTCGACCAACGAATATGAAAAG
*** * *
19260275 GGATAGTTTTGACTATCGACTATGAAAAGGGATGGTGACGACCATAAAGTATGAAAAGAGAGGGT
64 GGATAGTGACGACCATCGAATATGAAAAGGGATGGTGACGACCATAAAGTATGAAAAGAGAGGGT
*
19260340 GACGACCATCAACTATGA
129 GACGACCATCAACAATGA
19260358 AAAAGGAGGGTGACGACCATCAATGAATGAAAATGGATGGTTTCGACCAACGAATATGAAAAGGG
1 AAAAGGAGGGTGACGACCATCAATGAATGAAAATGGATGGTTTCGACCAACGAATATGAAAAGGG
* * * * * *
19260423 ATGGTGACGACCATCGAATATGTAAAGGGATGGTGACGATCATCAATTATGAAAATGA-ATGGTG
66 ATAGTGACGACCATCGAATATGAAAAGGGATGGTGACGACCATAAAGTATGAAAA-GAGAGGGTG
*
19260487 ATGACCATCGAA-AATGA
130 ACGACCATC-AACAATGA
19260504 AAA
1 AAA
19260507 GGGATGGTTT
Statistics
Matches: 126, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
144 1 0.01
145 23 0.18
146 98 0.78
147 4 0.03
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (146 bp):
AAAAGGAGGGTGACGACCATCAATGAATGAAAATGGATGGTTTCGACCAACGAATATGAAAAGGG
ATAGTGACGACCATCGAATATGAAAAGGGATGGTGACGACCATAAAGTATGAAAAGAGAGGGTGA
CGACCATCAACAATGA
Found at i:19260525 original size:87 final size:88
Alignment explanation
Indices: 19260325--19260514 Score: 242
Period size: 88 Copynumber: 2.2 Consensus size: 88
19260315 ACCATAAAGT
* * * * *
19260325 ATGAAAAGAGAGGGTGACGACCATC-AACTATGAAAAAGGAGGGTGACGACCATCAATGAATGAA
1 ATGAAAAGGGATGGTGACGACCATCGAA-TATGTAAAGGGATGGTGACGACCATCAATGAATGAA
* * *
19260389 AATGGATGGTTTCGACCAACGAAT
65 AATGAATGGTATCGACCAACGAAA
* *
19260413 ATGAAAAGGGATGGTGACGACCATCGAATATGTAAAGGGATGGTGACGATCATCAAT-TATGAAA
1 ATGAAAAGGGATGGTGACGACCATCGAATATGTAAAGGGATGGTGACGACCATCAATGAATGAAA
*
19260477 ATGAATGGTGAT-GACCATCGAAA
66 ATGAATGGT-ATCGACCAACGAAA
19260500 ATGAAAAGGGATGGT
1 ATGAAAAGGGATGGT
19260515 TTCGGCCATC
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
87 38 0.43
88 49 0.55
89 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.19
Consensus pattern (88 bp):
ATGAAAAGGGATGGTGACGACCATCGAATATGTAAAGGGATGGTGACGACCATCAATGAATGAAA
ATGAATGGTATCGACCAACGAAA
Found at i:19266585 original size:33 final size:33
Alignment explanation
Indices: 19266543--19266609 Score: 118
Period size: 33 Copynumber: 2.0 Consensus size: 33
19266533 TTATTATTTT
19266543 AATGTCTACAGCATGTTAA-TAATCTAGTATAAA
1 AATGTCTACAGCATG-TAAGTAATCTAGTATAAA
19266576 AATGTCTACAGCATGTAAGTAATCTAGTATAAA
1 AATGTCTACAGCATGTAAGTAATCTAGTATAAA
19266609 A
1 A
19266610 TGACTAGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.31
Consensus pattern (33 bp):
AATGTCTACAGCATGTAAGTAATCTAGTATAAA
Found at i:19267660 original size:30 final size:29
Alignment explanation
Indices: 19267585--19267812 Score: 233
Period size: 29 Copynumber: 7.8 Consensus size: 29
19267575 CGTATCGATT
* * * **
19267585 ACCATCGATTAATGAAATGGGATAGTTTCG
1 ACCATCGAAT-ATGAAAAGGGATGGTGACG
* * *
19267615 ACTATCGACTATGAAAAGGGATGGTGATG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* *
19267644 ACCATC-AACTGGTGAAAAGGAATGGTGACG
1 ACCATCGAA-T-ATGAAAAGGGATGGTGACG
* *
19267674 ACCATCGATTAATGAAAAGGGATGGTGGCG
1 ACCATCGAAT-ATGAAAAGGGATGGTGACG
*
19267704 ACCATCGAATATGAAAAGGGATGGTGATG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* *
19267733 ACCTTCGAATATGATAAGGGATGGTGACG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* * *
19267762 ACCATCAAACATGAAAAGGGATGATGACG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* *
19267791 ACCATCGAAAATGAAAAAGGAT
1 ACCATCGAATATGAAAAGGGAT
19267813 TGTTTCGACC
Statistics
Matches: 164, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
28 1 0.01
29 106 0.65
30 56 0.34
31 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.21
Consensus pattern (29 bp):
ACCATCGAATATGAAAAGGGATGGTGACG
Found at i:19273067 original size:40 final size:40
Alignment explanation
Indices: 19273036--19273126 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
19273026 GGACTAAGAT
* *
19273036 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
19273076 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
19273116 CCGAAGGCATT
1 CCGAAGGCATT
19273127 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:19273147 original size:39 final size:40
Alignment explanation
Indices: 19273036--19273163 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 40
19273026 GGACTAAGAT
* * * * *
19273036 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTACGAGTTCTAAAATCCGGGTTAAGTC
* *
19273076 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTACGAGTTCTAAAATCCGGGTTAAGTC
* * * *
19273116 CCGAAGGCATT-GTATGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTCGTACGAGTT-CTAAAATCCGGGTTAAGTC
19273155 CCGAAGGCA
1 CCGAAGGCA
19273164 CTTGAACGAG
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 26 0.34
40 51 0.66
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTACGAGTTCTAAAATCCGGGTTAAGTC
Found at i:19280942 original size:40 final size:39
Alignment explanation
Indices: 19280911--19281120 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
19280901 GGACTAAGAT
* *
19280911 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
19280951 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
19280991 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
19281031 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
19281071 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
19281110 CCGAAGGCATT
1 CCGAAGGCATT
19281121 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:19281074 original size:120 final size:120
Alignment explanation
Indices: 19280858--19281120 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
19280848 TTGAATGCTG
* *
19280858 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
19280922 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
19280978 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
19281041 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
19281097 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
19281121 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:19281140 original size:79 final size:80
Alignment explanation
Indices: 19280859--19281155 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
19280849 TGAATGCTGT
* ** * * * **
19280859 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
19280922 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
19280939 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
19281003 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
19281019 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
19281083 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
19281098 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
19281156 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:19289592 original size:40 final size:40
Alignment explanation
Indices: 19289233--19289578 Score: 529
Period size: 40 Copynumber: 8.7 Consensus size: 40
19289223 TTTGAATGAT
* * * * *
19289233 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
** *
19289273 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
19289313 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
19289352 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
19289392 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
19289432 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
19289472 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
19289512 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
19289553 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGTCCCGAAGGCATTTG
19289579 AACGAGTAGC
Statistics
Matches: 288, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
39 35 0.12
40 243 0.84
41 10 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:19289866 original size:54 final size:54
Alignment explanation
Indices: 19289803--19289908 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
19289793 TAAGGGTTGA
* * *
19289803 TAATGTGAAGCAAGTACGATATCGTAAATTTGTGCATATGAAATTATCCGTTAG
1 TAATGTGAAGCAAGTACGACATCGAAAAATTGTGCATATGAAATTATCCGTTAG
* * *
19289857 TAATGTGAAGTAAGTATGACATTGAAAAATTGTGCATATGAAATTATCCGTT
1 TAATGTGAAGCAAGTACGACATCGAAAAATTGTGCATATGAAATTATCCGTT
19289909 TAGCTACATG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (54 bp):
TAATGTGAAGCAAGTACGACATCGAAAAATTGTGCATATGAAATTATCCGTTAG
Found at i:19293496 original size:81 final size:81
Alignment explanation
Indices: 19293398--19293560 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
19293388 TTAATTTTGT
19293398 AAATTAGAAATATAAGTTAATAAAATTAAAACAAAAGAAATGATAATCATTATTCATCATCTTCT
1 AAATTAGAAATATAAGTTAATAAAATTAAAACAAAAGAAATGATAATCATTATTCATCATCTTCT
19293463 CACTGAAAATTAGAAA
66 CACTGAAAATTAGAAA
19293479 AAATTAGAAATATAAGTTAATAAAATTAAAACAAAAGAAATGATAATCATTATTCATCATCTTCT
1 AAATTAGAAATATAAGTTAATAAAATTAAAACAAAAGAAATGATAATCATTATTCATCATCTTCT
*
19293544 CACTGAAAGTTAGAAA
66 CACTGAAAATTAGAAA
19293560 A
1 A
19293561 GAGAATAGGG
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTAGAAATATAAGTTAATAAAATTAAAACAAAAGAAATGATAATCATTATTCATCATCTTCT
CACTGAAAATTAGAAA
Found at i:19295744 original size:27 final size:27
Alignment explanation
Indices: 19295713--19295890 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
19295703 TAAATTGTAC
19295713 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
19295740 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19295766 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
19295794 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
19295822 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
19295849 AGCACTACGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
19295876 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
19295891 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:19295854 original size:82 final size:81
Alignment explanation
Indices: 19295714--19295869 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
19295704 AAATTGTACA
* *
19295714 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
19295779 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
19295795 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTACGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
19295859 GTGCGAGTTGA
64 GTGCGAATTGA
19295870 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:19295881 original size:82 final size:81
Alignment explanation
Indices: 19295710--19295890 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
19295700 GATTAAATTG
* *
19295710 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
19295775 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
19295791 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
19295855 ACGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
19295873 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
19295891 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:19309683 original size:14 final size:14
Alignment explanation
Indices: 19309666--19309692 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
19309656 TTTACCATGA
19309666 CATTTTAGTGTAGG
1 CATTTTAGTGTAGG
19309680 CATTTTAGTGTAG
1 CATTTTAGTGTAG
19309693 CCAAATTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.44
Consensus pattern (14 bp):
CATTTTAGTGTAGG
Found at i:19312558 original size:15 final size:15
Alignment explanation
Indices: 19312522--19312552 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
19312512 TCCTCGAAAA
19312522 TCACATACCACGGGT
1 TCACATACCACGGGT
*
19312537 TCACATACCTCGGGT
1 TCACATACCACGGGT
19312552 T
1 T
19312553 TTCATATCGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (15 bp):
TCACATACCACGGGT
Found at i:19313947 original size:37 final size:37
Alignment explanation
Indices: 19313897--19313970 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
19313887 GGTGAGCATT
19313897 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
1 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
19313934 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
1 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
19313971 TACATATCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (37 bp):
AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
Found at i:19322291 original size:39 final size:40
Alignment explanation
Indices: 19322196--19322418 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
19322186 TTGAATGATG
*
19322196 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
19322234 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
19322275 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
19322314 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
19322353 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
19322392 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
19322419 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:19322382 original size:79 final size:81
Alignment explanation
Indices: 19322196--19322418 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
19322186 TTGAATGATG
* * *
19322196 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
19322257 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
19322275 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
19322337 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
19322353 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
19322417 TG
66 TG
19322419 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:19322440 original size:79 final size:79
Alignment explanation
Indices: 19322196--19322451 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
19322186 TTGAATGATG
* * * *
19322196 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
19322257 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
19322275 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
19322339 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
19322353 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
19322417 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
19322433 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
19322452 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:19330320 original size:79 final size:81
Alignment explanation
Indices: 19330184--19330368 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
19330174 TTGAATGATG
*
19330184 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
19330248 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
19330263 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
19330325 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
19330343 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
19330369 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:19330382 original size:40 final size:40
Alignment explanation
Indices: 19330185--19330368 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
19330175 TGAATGATGT
* * * *
19330185 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
19330225 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
19330265 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
19330303 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
19330344 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
19330369 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:19330390 original size:79 final size:79
Alignment explanation
Indices: 19330237--19330401 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
19330227 GGACTAAGAT
* **
19330237 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
19330302 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
19330316 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
19330379 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
19330395 CCGAAGG
1 CCGAAGG
19330402 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:19349497 original size:22 final size:22
Alignment explanation
Indices: 19349484--19349563 Score: 88
Period size: 22 Copynumber: 3.6 Consensus size: 22
19349474 ACCGAACAAC
19349484 CACCATACAACCACCATATCAA
1 CACCATACAACCACCATATCAA
* * * *
19349506 CACCATTCAACCACCTTAGCAC
1 CACCATACAACCACCATATCAA
* *
19349528 CACCACACCACCACCATATCAA
1 CACCATACAACCACCATATCAA
* *
19349550 AACCATACCACCAC
1 CACCATACAACCAC
19349564 TCTTGTACCA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.40, C:0.46, G:0.01, T:0.12
Consensus pattern (22 bp):
CACCATACAACCACCATATCAA
Found at i:19349510 original size:14 final size:11
Alignment explanation
Indices: 19349479--19349563 Score: 68
Period size: 11 Copynumber: 7.7 Consensus size: 11
19349469 ATTCCACCGA
19349479 ACAACCACCAT
1 ACAACCACCAT
19349490 ACAACCACCAT
1 ACAACCACCAT
19349501 ATCAA-CACCAT
1 A-CAACCACCAT
* *
19349512 TCAACCACCTT
1 ACAACCACCAT
*
19349523 AGC-ACCACCAC
1 A-CAACCACCAT
*
19349534 ACCACCACCAT
1 ACAACCACCAT
*
19349545 ATCAA-AACCAT
1 A-CAACCACCAT
*
19349556 ACCACCAC
1 ACAACCAC
19349564 TCTTGTACCA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
10 6 0.10
11 46 0.79
12 6 0.10
ACGTcount: A:0.41, C:0.46, G:0.01, T:0.12
Consensus pattern (11 bp):
ACAACCACCAT
Found at i:19357799 original size:35 final size:35
Alignment explanation
Indices: 19357750--19357840 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 35
19357740 TTTAACACAG
* * *
19357750 TGGCATGCTAAACATGTGAATCAGAATCAGATTTA
1 TGGCATGCTTAACATGTGAATCAGAATCAGAATAA
* * *
19357785 TGGCATGCTTAACATGCGATTCATAATCAGAATAA
1 TGGCATGCTTAACATGTGAATCAGAATCAGAATAA
* *
19357820 TAGCATGATTAACATGTGAAT
1 TGGCATGCTTAACATGTGAAT
19357841 GGAATATCAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (35 bp):
TGGCATGCTTAACATGTGAATCAGAATCAGAATAA
Found at i:19359261 original size:4 final size:4
Alignment explanation
Indices: 19359252--19359278 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
19359242 TGAACCAATG
19359252 TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA
19359279 TGTGACGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:19361208 original size:24 final size:25
Alignment explanation
Indices: 19361168--19361214 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
19361158 AAATTTTATG
19361168 AAGTTTTATCTAACAA-TTAGAAAT
1 AAGTTTTATCTAACAATTTAGAAAT
*
19361192 AAGTTTTCAT-TATCAATTTAGAA
1 AAGTTTT-ATCTAACAATTTAGAA
19361215 TGTTTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (25 bp):
AAGTTTTATCTAACAATTTAGAAAT
Found at i:19361299 original size:29 final size:29
Alignment explanation
Indices: 19361257--19361314 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
19361247 TACCAGTATC
* * *
19361257 TATAGTTTTTAGAATCTAGAGTTTCACAG
1 TATAGTTTTCAGAATCAAAAGTTTCACAG
19361286 TATAGTTTTCAGAATCAAAAGTTTCACAG
1 TATAGTTTTCAGAATCAAAAGTTTCACAG
19361315 CTAATAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (29 bp):
TATAGTTTTCAGAATCAAAAGTTTCACAG
Found at i:19362144 original size:35 final size:35
Alignment explanation
Indices: 19362053--19362178 Score: 130
Period size: 35 Copynumber: 3.6 Consensus size: 35
19362043 TGACACAATG
* * *
19362053 GCATGCTTAACATGCAAATCAGAATC-AAAT-TTA
1 GCATGCTTAACATGCGAATCATAGTCAAAATATTA
*
19362086 TGGCATGCTTAACATGTGAATCATAGTCAAAATATTA
1 --GCATGCTTAACATGCGAATCATAGTCAAAATATTA
* * * *
19362123 GCATGCTTAACAAGCGAATCATAGTTAGAATAATA
1 GCATGCTTAACATGCGAATCATAGTCAAAATATTA
* *
19362158 GCATGGTTAACATGTGAATCA
1 GCATGCTTAACATGCGAATCA
19362179 GAATATCCAT
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
35 70 0.91
36 4 0.05
37 3 0.04
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (35 bp):
GCATGCTTAACATGCGAATCATAGTCAAAATATTA
Found at i:19364321 original size:48 final size:48
Alignment explanation
Indices: 19364220--19364344 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 48
19364210 AAGATGACTT
* * * *
19364220 AAATTTGGTGG-TTTATCCACAACCTACATGTTTTGGGAGTTGTTCTAC
1 AAATTTGGTGGCTTTGTCCACAA-CTATATGTATTGGCAGTTGTTCTAC
* *
19364268 GAATTTGGTGGCTTTGTCCACAACTATATGTATTGGCAGTT-TGTCTGC
1 AAATTTGGTGGCTTTGTCCACAACTATATGTATTGGCAGTTGT-TCTAC
19364316 AAATTTGGTGGCTTTGTCCAC-A-TATATGT
1 AAATTTGGTGGCTTTGTCCACAACTATATGT
19364345 TGGTGTGTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
46 7 0.10
47 2 0.03
48 49 0.72
49 10 0.15
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (48 bp):
AAATTTGGTGGCTTTGTCCACAACTATATGTATTGGCAGTTGTTCTAC
Found at i:19365573 original size:15 final size:15
Alignment explanation
Indices: 19365544--19365580 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
19365534 CTGACACCTG
*
19365544 CAAAG-AGAAACCAA
1 CAAAGCAGAAAACAA
19365558 CAAAGCAGAAAACAA
1 CAAAGCAGAAAACAA
19365573 CAAA-CAGA
1 CAAAGCAGA
19365581 CAATCCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.65, C:0.22, G:0.14, T:0.00
Consensus pattern (15 bp):
CAAAGCAGAAAACAA
Found at i:19367438 original size:106 final size:106
Alignment explanation
Indices: 19367263--19367461 Score: 326
Period size: 106 Copynumber: 1.9 Consensus size: 106
19367253 TCAAAATAAG
* * * * *
19367263 GCAATATTTTACGTTTGGAAATTCGAGAAGACGTGCCCTAACGTGCTGGGTTTCGATTTCTTGTT
1 GCAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTCTCGTA
*
19367328 CGACCAAATAGCCAAATATCCTTTTAAAATTTCAAATCCAA
66 CGACCAAATAGCCAAATATCCTCTTAAAATTTCAAATCCAA
* *
19367369 GCAATATTTTACGTTTAGAAATTCGAGAAAATGTGCCCTAATGTGCTGAGTTTCGATTTCTCGTA
1 GCAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTCTCGTA
19367434 CGACCAAATAGCCAAATATCCTCTTAAA
66 CGACCAAATAGCCAAATATCCTCTTAAA
19367462 TCTCAATCCA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
106 85 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (106 bp):
GCAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTCTCGTA
CGACCAAATAGCCAAATATCCTCTTAAAATTTCAAATCCAA
Found at i:19369748 original size:53 final size:54
Alignment explanation
Indices: 19369648--19369752 Score: 162
Period size: 53 Copynumber: 2.0 Consensus size: 54
19369638 ATAATGACCG
19369648 AAATACCCTCGATGGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTA
1 AAATACCCTCGATGGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTA
*
19369702 AAATACCCTCG-TAGGGTAGAAT-ATC-GAAATACCCCCATAGGGTAAAATGAC
1 AAATACCCTCGAT-GGGTAAAATGA-CAGAAATACCCCCATAGGGTAAAATGAC
19369753 CGTAATATCC
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
53 28 0.58
54 20 0.42
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (54 bp):
AAATACCCTCGATGGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTA
Found at i:19369769 original size:27 final size:27
Alignment explanation
Indices: 19369640--19369839 Score: 147
Period size: 27 Copynumber: 7.4 Consensus size: 27
19369630 AAAAAAGGAT
*
19369640 AATGACCGAAATA-CCCTCG-ATGGGTAA
1 AATGACCGTAATACCCCT-GTA-GGGTAA
* * **
19369667 AATGACAGAAATACCCCCATAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
*** *
19369694 AATGACTAAAATA-CCCTCGTAGGGTAG
1 AATGACCGTAATACCCCT-GTAGGGTAA
* * **
19369721 AAT-ATCGAAATACCCCCATAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
* *
19369747 AATGACCGTAATATCCTTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
* ** *
19369774 ATTGACCACAATGCCCCTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
* *
19369801 ATTAACCGTAATACCCCTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
*
19369828 AATGATCGTAAT
1 AATGACCGTAAT
19369840 GCCCTGGTGG
Statistics
Matches: 135, Mismatches: 33, Indels: 10
0.76 0.19 0.06
Matches are distributed among these distances:
26 19 0.14
27 112 0.83
28 4 0.03
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AATGACCGTAATACCCCTGTAGGGTAA
Found at i:19369796 original size:80 final size:81
Alignment explanation
Indices: 19369644--19369839 Score: 193
Period size: 80 Copynumber: 2.4 Consensus size: 81
19369634 AAGGATAATG
* * * *
19369644 ACCGAAATACCCTCGAT-GGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTAAAATAC
1 ACCGAAATACCC-CCATAGGGTAAAATGACCGTAATACCCCCATAGGGTAAAATGACCAAAATAC
19369708 CCTCGTAGGGTAGAA-T-
65 CCTCGTAGGGTA-AATTA
* * *** * * *
19369724 ATCGAAATACCCCCATAGGGTAAAATGACCGTAATATCCTTGTAGGGTAAATTGACCACAATGCC
1 ACCGAAATACCCCCATAGGGTAAAATGACCGTAATACCCCCATAGGGTAAAATGACCAAAATACC
19369789 C-CTGTAGGGTAAATTA
66 CTC-GTAGGGTAAATTA
* ** *
19369805 ACCGTAATACCCCTGTAGGGTAAAATGATCGTAAT
1 ACCGAAATACCCCCATAGGGTAAAATGACCGTAAT
19369840 GCCCTGGTGG
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
79 6 0.06
80 59 0.62
81 30 0.32
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (81 bp):
ACCGAAATACCCCCATAGGGTAAAATGACCGTAATACCCCCATAGGGTAAAATGACCAAAATACC
CTCGTAGGGTAAATTA
Found at i:19369841 original size:54 final size:53
Alignment explanation
Indices: 19369703--19369855 Score: 143
Period size: 54 Copynumber: 2.9 Consensus size: 53
19369693 AAATGACTAA
* * ** * *
19369703 AATACCCTCGTAGGGTAGAAT-ATCGAAATACCCCCATAGGGTAAAATGACCGT
1 AATACCCT-GTAGGGTAAAATGATCGAAATGCCCCTGTAGGGTAAATTAACCGT
* * *
19369756 AATATCCTTGTAGGGTAAATTGA-CCACAATGCCCCTGTAGGGTAAATTAACCGT
1 AATA-CCCTGTAGGGTAAAATGATCGA-AATGCCCCTGTAGGGTAAATTAACCGT
*
19369810 AATACCCCTGTAGGGTAAAATGATCGTAATG-CCCTGGT-GGGTAAAT
1 AATA-CCCTGTAGGGTAAAATGATCGAAATGCCCCT-GTAGGGTAAAT
19369856 GACTATGTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
53 28 0.35
54 52 0.64
55 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (53 bp):
AATACCCTGTAGGGTAAAATGATCGAAATGCCCCTGTAGGGTAAATTAACCGT
Found at i:19369906 original size:23 final size:23
Alignment explanation
Indices: 19369879--19369945 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
19369869 CATCGAGGTC
*
19369879 AAATGATTGTTTTGTCTGTGGTT
1 AAATGATTGATTTGTCTGTGGTT
* * *
19369902 AAATGACTAATTTGTCTGTGTTT
1 AAATGATTGATTTGTCTGTGGTT
**
19369925 AGTGTGATTGATTTGTCTGTG
1 A-AATGATTGATTTGTCTGTG
19369946 ATTTGAATGA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 20 0.57
24 15 0.43
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.49
Consensus pattern (23 bp):
AAATGATTGATTTGTCTGTGGTT
Found at i:19370095 original size:27 final size:27
Alignment explanation
Indices: 19370043--19370095 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
19370033 TGTTGTCTCT
* **
19370043 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
19370070 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
19370096 TGATGCGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:19370177 original size:32 final size:32
Alignment explanation
Indices: 19370136--19370308 Score: 149
Period size: 32 Copynumber: 5.4 Consensus size: 32
19370126 ACAATGCTAT
*
19370136 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
*
19370168 TGATGGCTTTGTGCCGATCATATTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
* * * * * *
19370200 CGATGGCTATGTGCCGGTCAT-TTCACTGTTAT
1 TGATGGCTTTGTGCCGATCATAGT-ACCGTTAC
19370232 TGATGG-TTGTGTGCCGATCAT-GTTACCGTTAC
1 TGATGGCTT-TGTGCCGATCATAG-TACCGTTAC
* * * *
19370264 TGATGG-TTGTGTGTCAATCATA-TCACTGCTAC
1 TGATGGCTT-TGTGCCGATCATAGT-ACCGTTAC
*
19370296 TGATAGCTTTGTG
1 TGATGGCTTTGTG
19370309 TCAATCACAT
Statistics
Matches: 117, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
31 4 0.03
32 110 0.94
33 3 0.03
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATAGTACCGTTAC
Found at i:19370290 original size:64 final size:63
Alignment explanation
Indices: 19370136--19370308 Score: 188
Period size: 64 Copynumber: 2.7 Consensus size: 63
19370126 ACAATGCTAT
*
19370136 TGATGGCTTTGTGTCGATCATAGT-ACCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTAC
1 TGATGG-TTTGTGTCGATCATA-TCACTGTTACTGATGGCTTTGTGCCGATCATATTACCGTTAC
* * * * * * *
19370200 CGATGGCTATGTGCCGGTCATTTCACTGTTATTGATGG-TTGTGTGCCGATCATGTTACCGTTAC
1 TGATGG-TTTGTGTCGATCATATCACTGTTACTGATGGCTT-TGTGCCGATCATATTACCGTTAC
* * *
19370264 TGATGGTTGTGTGTCAATCATATCACTGCTACTGATAGCTTTGTG
1 TGATGGTT-TGTGTCGATCATATCACTGTTACTGATGGCTTTGTG
19370309 TCAATCACAT
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
63 4 0.05
64 82 0.93
65 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (63 bp):
TGATGGTTTGTGTCGATCATATCACTGTTACTGATGGCTTTGTGCCGATCATATTACCGTTAC
Found at i:19370324 original size:96 final size:96
Alignment explanation
Indices: 19370133--19370324 Score: 203
Period size: 96 Copynumber: 2.0 Consensus size: 96
19370123 GCTACAATGC
* * * *
19370133 TATTGATGGCTTTGTGTCGATCATAGTACCGTTACTGATGGCTTTGTGCCGATCATATTACCGTT
1 TATTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTTTGTGCCAATCATATCACCGCT
* ** *
19370198 ACCGATGGCTATGTGCCGGTCATTTCACTGT
66 ACCGATAGCTATGTGCCAATCAATTCACTGT
* *
19370229 TATTGATGG-TTGTGTGCCGATCAT-GTTACCGTTACTGATGG-TTGTGTGTCAATCATATCACT
1 TATTGATGGCTT-TGTGCCGATCATAG-TACCGTTACTGATGGCTT-TGTGCCAATCATATCACC
* * *
19370291 GCTACTGATAGCTTTGTGTCAATCACATT-ACTGT
63 GCTACCGATAGCTATGTGCCAATCA-ATTCACTGT
19370325 ACTTATGGCT
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
95 5 0.06
96 72 0.91
97 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (96 bp):
TATTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTTTGTGCCAATCATATCACCGCT
ACCGATAGCTATGTGCCAATCAATTCACTGT
Found at i:19380312 original size:19 final size:20
Alignment explanation
Indices: 19380275--19380312 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
19380265 TCAGTTGCAA
*
19380275 TTTCAAAGAGGATAAAATTC
1 TTTCAAAGAGGACAAAATTC
19380295 TTTCAAAGA-GACAAAATT
1 TTTCAAAGAGGACAAAATT
19380313 ATTCATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (20 bp):
TTTCAAAGAGGACAAAATTC
Found at i:19381405 original size:72 final size:73
Alignment explanation
Indices: 19381315--19381477 Score: 215
Period size: 74 Copynumber: 2.2 Consensus size: 73
19381305 AACCCAAACC
* * *
19381315 CTTTTACTTTCCCCCAAAAATTTAACTTCC-CCCAAAC-CCTAAAACTTTTTTCTTTTTA-CTTT
1 CTTTTAC-TTCCCCCAAAAATTTAACTTCCTCCCAAACTCCCAAAACTTTTTTCTTTTTACCCTC
*
19381377 TCCCTTAAAA
65 TCCC-CAAAA
* *
19381387 CTTTTACTTCCCCTCAAAAATTTTACTTCCTCCCAAACTCCCAGAACTTTTTTCTTTTTACCCTC
1 CTTTTACTTCCCC-CAAAAATTTAACTTCCTCCCAAACTCCCAAAACTTTTTTCTTTTTACCCTC
19381452 TCCCCAAAA
65 TCCCCAAAA
*
19381461 CTTTTACTTCCTCCAAA
1 CTTTTACTTCCCCCAAA
19381478 CCCCAAAAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
71 6 0.08
72 22 0.28
73 11 0.14
74 35 0.44
75 6 0.08
ACGTcount: A:0.26, C:0.34, G:0.01, T:0.40
Consensus pattern (73 bp):
CTTTTACTTCCCCCAAAAATTTAACTTCCTCCCAAACTCCCAAAACTTTTTTCTTTTTACCCTCT
CCCCAAAA
Found at i:19381423 original size:19 final size:19
Alignment explanation
Indices: 19381368--19381416 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
19381358 ACTTTTTTCT
* * *
19381368 TTTTACTTTTCCCTTAAAAC
1 TTTTAC-TTCCCCTCAAAAA
19381388 TTTTACTTCCCCTCAAAAA
1 TTTTACTTCCCCTCAAAAA
19381407 TTTTACTTCC
1 TTTTACTTCC
19381417 TCCCAAACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTTACTTCCCCTCAAAAA
Found at i:19384119 original size:17 final size:16
Alignment explanation
Indices: 19384087--19384117 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
19384077 TCTAATTGAG
19384087 TTGAAATTATTTTTTA
1 TTGAAATTATTTTTTA
19384103 TTGAAATTATTTTTT
1 TTGAAATTATTTTTT
19384118 TACCCTCCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TTGAAATTATTTTTTA
Found at i:19389461 original size:79 final size:78
Alignment explanation
Indices: 19389359--19389581 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
19389349 GCTCCTCGTT
* *
19389359 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
19389424 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
19389439 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
19389502 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
19389517 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
19389580 GA
63 GA
19389582 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:19389476 original size:39 final size:40
Alignment explanation
Indices: 19389359--19389581 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
19389349 GCTCCTCGTT
* *
19389359 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
19389399 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
19389439 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
19389478 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
19389517 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
19389558 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19389582 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:19397453 original size:79 final size:78
Alignment explanation
Indices: 19397351--19397573 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
19397341 GCTCCTCGTT
* *
19397351 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
19397416 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
19397431 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
19397495 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
19397509 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
19397572 GA
63 GA
19397574 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:19397468 original size:39 final size:40
Alignment explanation
Indices: 19397351--19397573 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
19397341 GCTCCTCGTT
* *
19397351 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
19397391 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
19397431 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
19397470 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
19397509 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
19397550 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19397574 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:19401181 original size:61 final size:58
Alignment explanation
Indices: 19401096--19401211 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 58
19401086 AGCGATTATC
*
19401096 TTAATATTAAATTTAATTTAATATTTATCTTGCACATAAATA-TACTATTAATTTAATAGAT
1 TTAATATTAAATTTAATCTAATATTTATCTT--A-ATAAATATTA-TATTAATTTAATAGAT
* * * *
19401157 TTAATTTTAATTTTAATCTGATATTTATCTTAATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTAATAAATATTATATTAATTTAATA
19401212 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
58 19 0.39
59 3 0.06
61 27 0.55
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (58 bp):
TTAATATTAAATTTAATCTAATATTTATCTTAATAAATATTATATTAATTTAATAGAT
Found at i:19405286 original size:11 final size:11
Alignment explanation
Indices: 19405270--19405299 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
19405260 CCCATATTAA
19405270 TATTTTTATAT
1 TATTTTTATAT
19405281 TATTTTTATAT
1 TATTTTTATAT
*
19405292 AATTTTTA
1 TATTTTTA
19405300 AATATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TATTTTTATAT
Found at i:19436757 original size:19 final size:17
Alignment explanation
Indices: 19436732--19436780 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
19436722 TAATATTTTG
19436732 TTAATTTAATATTAAAAT
1 TTAATTTAATATT-AAAT
*
19436750 TATTATTTAATATTAAAT
1 T-TAATTTAATATTAAAT
19436768 TTAATTTAATATT
1 TTAATTTAATATT
19436781 TATCTTGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 11 0.39
18 6 0.21
19 11 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTAATTTAATATTAAAT
Found at i:19436769 original size:12 final size:12
Alignment explanation
Indices: 19436732--19436782 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
19436722 TAATATTTTG
19436732 TTAATTTAATAT
1 TTAATTTAATAT
* * *
19436744 TAAAATTATTAT
1 TTAATTTAATAT
19436756 TTAATATTAA-AT
1 TTAAT-TTAATAT
19436768 TTAATTTAATAT
1 TTAATTTAATAT
19436780 TTA
1 TTA
19436783 TCTTGTAGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 4 0.13
12 24 0.77
13 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTAATTTAATAT
Found at i:19436822 original size:61 final size:58
Alignment explanation
Indices: 19436754--19436871 Score: 173
Period size: 61 Copynumber: 2.0 Consensus size: 58
19436744 TAAAATTATT
** *
19436754 ATTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTTTATTAATTTAATAG
1 ATTTAATATTAAATTTAATCAAATATTTATCTTG-A-A-AAATATTATATTAATTTAATAG
*
19436815 ATTTAATATTAAATTTAATCAAATATTTATCTTGAAAAGTATTATATTAATTTAATA
1 ATTTAATATTAAATTTAATCAAATATTTATCTTGAAAAATATTATATTAATTTAATA
19436872 TTAAAATGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 19 0.36
59 1 0.02
60 1 0.02
61 32 0.60
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (58 bp):
ATTTAATATTAAATTTAATCAAATATTTATCTTGAAAAATATTATATTAATTTAATAG
Found at i:19436891 original size:58 final size:60
Alignment explanation
Indices: 19436758--19436893 Score: 163
Period size: 58 Copynumber: 2.3 Consensus size: 60
19436748 ATTATTATTT
** * *
19436758 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTTTATTAATTTAATAGATTT
1 AATATTAAATTTAATCAAATATTTATCTTGTAGATAAATATTATATTAATTTAATA-ATTA
*
19436819 AATATTAAATTTAATCAAATATTTATCTTG-A-A-AAGTATTATATTAATTTAAT-ATTAA
1 AATATTAAATTTAATCAAATATTTATCTTGTAGATAAATATTATATTAATTTAATAATT-A
*
19436876 AATGATTAAGTTTAATCA
1 AAT-ATTAAATTTAATCA
19436894 TAGTTAAACT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
56 3 0.04
57 3 0.04
58 31 0.46
59 1 0.01
60 1 0.01
61 28 0.42
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (60 bp):
AATATTAAATTTAATCAAATATTTATCTTGTAGATAAATATTATATTAATTTAATAATTA
Found at i:19449052 original size:30 final size:30
Alignment explanation
Indices: 19449018--19449074 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
19449008 ACGGCCTGAG
*
19449018 ACACGGGC-ATGTGACTCAGTCATGTGTTAC
1 ACAC-GGCAATGTGACACAGTCATGTGTTAC
*
19449048 ACACGGCAATGTGACACGGTCATGTGT
1 ACACGGCAATGTGACACAGTCATGTGT
19449075 CCCATGTAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (30 bp):
ACACGGCAATGTGACACAGTCATGTGTTAC
Found at i:19450521 original size:13 final size:13
Alignment explanation
Indices: 19450503--19450527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19450493 TTATATATTA
19450503 CATTGTAAATAGG
1 CATTGTAAATAGG
19450516 CATTGTAAATAG
1 CATTGTAAATAG
19450528 CATATATGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (13 bp):
CATTGTAAATAGG
Found at i:19465939 original size:252 final size:251
Alignment explanation
Indices: 19465495--19465995 Score: 790
Period size: 252 Copynumber: 2.0 Consensus size: 251
19465485 ATCCGGCGAT
* * * * *
19465495 CCTAACCAGGGATCCATGTGTGAGGAACGAATCGGGGTGAAAGAGGTTGCGAAATTATCTAATGT
1 CCTAACCAGAGATCCATGTGTGAGGAACGAATCGGGGTGAAAAAGGTTGCAAAATTATCGAATCT
* * *
19465560 TTATTCAGAGTAGACAGCAACACCTCAACAACGAGTAGTCTGATCTGCTGTCGAACCAAACCACA
66 TTATTCAGAGTAGACAGCAACACCTCAACAACGAGTAATCTGATCTACTATCGAACCAAACCACA
*
19465625 ATCTATCGTGATTCCAGCCTCTACGTAATCCACCTAGTTGACTACGAATGGAAGGAATCCCCAAA
131 ATCTATCGTGATCCCAGCCTCTACGTAATCCACCTAGTTGACTACGAATGGAAGGAATCCCCAAA
*
19465690 ACAGTTTTGAGAGTTATTTTTCTTTGAAGGCTGCTAGACTCAAACAAAGAAAAATG
196 ACAGTTTTGAGAGTTATTTTTCTTTGAAGGCTGCTAGACTCAAACAAAAAAAAATG
* * *
19465746 CCTAACCATAGATCCATGTGTGAGGAACGAGTC-GGGTGAAATAAAGGTTTCAAAATTATCGAAT
1 CCTAACCAGAGATCCATGTGTGAGGAACGAATCGGGGTG-AA-AAAGGTTGCAAAATTATCGAAT
* * * * *
19465810 CTTTATTCTGAGTAGACAGCAACGCCTCAGCAATGAGTAATCTGATCTACTATCGAACCAAACCG
64 CTTTATTCAGAGTAGACAGCAACACCTCAACAACGAGTAATCTGATCTACTATCGAACCAAACCA
*
19465875 CAATCTATCGTGATCCCGGCCTCTACGTAATCCA-CTCAGTTGACTACGAATGGAAGGAATCCCC
129 CAATCTATCGTGATCCCAGCCTCTACGTAATCCACCT-AGTTGACTACGAATGGAAGGAATCCCC
19465939 AAAACAGTTTTGAGAGTTATTTTTCTTTGAAGGCTGCTAGACTCAAACAAAAAAAAA
193 AAAACAGTTTTGAGAGTTATTTTTCTTTGAAGGCTGCTAGACTCAAACAAAAAAAAA
19465996 AGGGATTATA
Statistics
Matches: 228, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
250 5 0.02
251 34 0.15
252 189 0.83
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (251 bp):
CCTAACCAGAGATCCATGTGTGAGGAACGAATCGGGGTGAAAAAGGTTGCAAAATTATCGAATCT
TTATTCAGAGTAGACAGCAACACCTCAACAACGAGTAATCTGATCTACTATCGAACCAAACCACA
ATCTATCGTGATCCCAGCCTCTACGTAATCCACCTAGTTGACTACGAATGGAAGGAATCCCCAAA
ACAGTTTTGAGAGTTATTTTTCTTTGAAGGCTGCTAGACTCAAACAAAAAAAAATG
Found at i:19467499 original size:17 final size:17
Alignment explanation
Indices: 19467479--19467518 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
19467469 AGAAGAGTCT
* *
19467479 GCCAAACCCTAGAGTTC
1 GCCAAAACCTAGAGCTC
*
19467496 GCCAAAATCTAGAGCTC
1 GCCAAAACCTAGAGCTC
19467513 GCCAAA
1 GCCAAA
19467519 TGGCAAATCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.33, G:0.17, T:0.15
Consensus pattern (17 bp):
GCCAAAACCTAGAGCTC
Found at i:19472841 original size:5 final size:5
Alignment explanation
Indices: 19472833--19472890 Score: 62
Period size: 5 Copynumber: 11.6 Consensus size: 5
19472823 TATTTTTTTT
* * * ** *
19472833 CATTC CATTC CATCC CATTC CATTC CATAC CATTT CATTC CATAG CATTT
1 CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC
19472883 CATTC CAT
1 CATTC CAT
19472891 CAAGCATTCA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.24, C:0.36, G:0.02, T:0.38
Consensus pattern (5 bp):
CATTC
Found at i:19472853 original size:15 final size:15
Alignment explanation
Indices: 19472833--19472890 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
19472823 TATTTTTTTT
*
19472833 CATTCCATTCCATCC
1 CATTCCATTCCATAC
19472848 CATTCCATTCCATAC
1 CATTCCATTCCATAC
* *
19472863 CATTTCATTCCATAG
1 CATTCCATTCCATAC
*
19472878 CATTTCATTCCAT
1 CATTCCATTCCAT
19472891 CAAGCATTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.24, C:0.36, G:0.02, T:0.38
Consensus pattern (15 bp):
CATTCCATTCCATAC
Found at i:19474252 original size:34 final size:34
Alignment explanation
Indices: 19474206--19474277 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
19474196 TTCTCTCTCC
*
19474206 TCTA-GCTTCTATTTCTTAAATCTAACTTGATAT
1 TCTAGGCTACTATTTCTTAAATCTAACTTGATAT
*
19474239 TCTAGGCTACTATTTCTTGAATCTAACTTGATAT
1 TCTAGGCTACTATTTCTTAAATCTAACTTGATAT
19474273 TCTAG
1 TCTAG
19474278 CTCCCCATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 4 0.11
34 32 0.89
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (34 bp):
TCTAGGCTACTATTTCTTAAATCTAACTTGATAT
Done.