Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 63 of 185
Found at i:19829710 original size:39 final size:40
Alignment explanation
Indices: 19829647--19829731 Score: 127
Period size: 39 Copynumber: 2.1 Consensus size: 40
19829637 TTACGTAAAA
* *
19829647 TAATGACTAAGTTATTCTTACATTACAATTGTATGGTAAC
1 TAATGACTAAGTTACTCTTACATTACAATTGTAAGGTAAC
* *
19829687 -AATGACTAAGTTACTCTTGCATTATAATTGTAAGGTAAC
1 TAATGACTAAGTTACTCTTACATTACAATTGTAAGGTAAC
19829726 TAATGA
1 TAATGA
19829732 AAGGTAACTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 35 0.88
40 5 0.12
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (40 bp):
TAATGACTAAGTTACTCTTACATTACAATTGTAAGGTAAC
Found at i:19829737 original size:14 final size:14
Alignment explanation
Indices: 19829718--19829746 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
19829708 TTATAATTGT
19829718 AAGGTAACTAATGA
1 AAGGTAACTAATGA
19829732 AAGGTAACTAATGA
1 AAGGTAACTAATGA
19829746 A
1 A
19829747 TTAATTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
AAGGTAACTAATGA
Found at i:19834982 original size:3 final size:3
Alignment explanation
Indices: 19834974--19835003 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
19834964 ACTGATAATT
19834974 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
19835004 GACAAAGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:19835304 original size:9 final size:10
Alignment explanation
Indices: 19835284--19835308 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
19835274 GTAAAAGCTT
19835284 AAAATTTAAA
1 AAAATTTAAA
19835294 AAAATTTAAA
1 AAAATTTAAA
19835304 AAAAT
1 AAAAT
19835309 ATAGTTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:19840757 original size:6 final size:6
Alignment explanation
Indices: 19840746--19840789 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
19840736 GATTGCGAGA
* *
19840746 ATGATG ATGATG ATGACG ATGACG ATGACG ATGACG ATGACG AT
1 ATGACG ATGACG ATGACG ATGACG ATGACG ATGACG ATGACG AT
19840790 TCTTTGATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.34, C:0.11, G:0.32, T:0.23
Consensus pattern (6 bp):
ATGACG
Found at i:19840944 original size:12 final size:12
Alignment explanation
Indices: 19840929--19840966 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
19840919 TTACAAGTTG
*
19840929 TTTTTTGTGTTA
1 TTTTTTGTGCTA
*
19840941 TTTTAT-TGCTA
1 TTTTTTGTGCTA
19840952 TTTTTTGTGCTA
1 TTTTTTGTGCTA
19840964 TTT
1 TTT
19840967 CACTGTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.11, C:0.05, G:0.13, T:0.71
Consensus pattern (12 bp):
TTTTTTGTGCTA
Found at i:19841892 original size:6 final size:6
Alignment explanation
Indices: 19841881--19841931 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
19841871 AAATAGACAC
19841881 AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT
1 AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT AGGAAT
19841929 AGG
1 AGG
19841932 CTCATATAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.35, T:0.16
Consensus pattern (6 bp):
AGGAAT
Found at i:19847412 original size:85 final size:85
Alignment explanation
Indices: 19847264--19847466 Score: 388
Period size: 85 Copynumber: 2.4 Consensus size: 85
19847254 ACTATGTCGA
*
19847264 ATTCGAATCAAAGTCAAATAGAAGTAATATAGAAAAATAGAACACTCAAAGACGACTGTGTCTAT
1 ATTCTAATCAAAGTCAAATAGAAGTAATATAGAAAAATAGAACACTCAAAGACGACTGTGTCTAT
19847329 TTATAGGTTTGTAAAACCAT
66 TTATAGGTTTGTAAAACCAT
*
19847349 ATTCTAATCAAAGTCAAATAGAAGTAATATAGAAGAATAGAACACTCAAAGACGACTGTGTCTAT
1 ATTCTAATCAAAGTCAAATAGAAGTAATATAGAAAAATAGAACACTCAAAGACGACTGTGTCTAT
19847414 TTATAGGTTTGTAAAACCAT
66 TTATAGGTTTGTAAAACCAT
19847434 ATTCTAATCAAAGTCAAATAGAAGTAATATAGA
1 ATTCTAATCAAAGTCAAATAGAAGTAATATAGA
19847467 TAGGTTAAAA
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 116 1.00
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (85 bp):
ATTCTAATCAAAGTCAAATAGAAGTAATATAGAAAAATAGAACACTCAAAGACGACTGTGTCTAT
TTATAGGTTTGTAAAACCAT
Found at i:19850399 original size:27 final size:27
Alignment explanation
Indices: 19850358--19850412 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
19850348 AAGATGAAGC
*
19850358 AACTGTAGCACCACTAGTAATAATAGA
1 AACTGTAGCACCACTAGTAACAATAGA
*
19850385 AACTGTAGCATCACTAGTAACAATAGA
1 AACTGTAGCACCACTAGTAACAATAGA
19850412 A
1 A
19850413 CCCTACAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.45, C:0.18, G:0.15, T:0.22
Consensus pattern (27 bp):
AACTGTAGCACCACTAGTAACAATAGA
Found at i:19850686 original size:19 final size:20
Alignment explanation
Indices: 19850654--19850699 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
19850644 CAGAAAATAA
19850654 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
19850674 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
19850693 TTTCTGG
1 TTTCTGG
19850700 TGTTGGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:19852476 original size:39 final size:39
Alignment explanation
Indices: 19852418--19852496 Score: 124
Period size: 39 Copynumber: 2.0 Consensus size: 39
19852408 GCTAAAAATT
**
19852418 AGGGAAAGATCATCTTCACAATGGAACTTCCCAACCCAA
1 AGGGAAAGATCATCTTCACAATAAAACTTCCCAACCCAA
19852457 AGGGAAAGATCAT-TCTCACAATAAAACTTCCCAACCCAA
1 AGGGAAAGATCATCT-TCACAATAAAACTTCCCAACCCAA
19852496 A
1 A
19852497 TCCTTTTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 36 0.97
ACGTcount: A:0.42, C:0.28, G:0.13, T:0.18
Consensus pattern (39 bp):
AGGGAAAGATCATCTTCACAATAAAACTTCCCAACCCAA
Found at i:19853194 original size:21 final size:20
Alignment explanation
Indices: 19853170--19853208 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
19853160 GTTAAAAATA
19853170 ATTATCATTTTCATCATTTGG
1 ATTATCATTTTCAT-ATTTGG
19853191 ATTATCATTTTCATATTT
1 ATTATCATTTTCATATTT
19853209 TAATCCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.56
Consensus pattern (20 bp):
ATTATCATTTTCATATTTGG
Found at i:19867183 original size:20 final size:20
Alignment explanation
Indices: 19867160--19867208 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
19867150 GAACCACTCT
19867160 ATTTACATT-CTTACCATTCC
1 ATTTAC-TTACTTACCATTCC
* *
19867180 ATTTACTTACTTTCCATTTC
1 ATTTACTTACTTACCATTCC
19867200 ATTTACTTA
1 ATTTACTTA
19867209 GCATAAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTACTTACTTACCATTCC
Found at i:19867918 original size:40 final size:40
Alignment explanation
Indices: 19867872--19868167 Score: 342
Period size: 40 Copynumber: 7.4 Consensus size: 40
19867862 AAATCAACTG
* * *
19867872 AACACACCAGACAGAAACTCATAAGAGCTGATCCACCCG-
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
* *
19867911 AAGCACACTAAACAGGAGCTCATAAGAGCTGATCCAACCGT
1 AA-CACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
* * *
19867952 AACACGCCAAACAGAAGCTCATAATAGCTTATCCAACCGT
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
** * *
19867992 AACATGCCAAACAGAAGCTCATAAGAGCTTATCCAACCGA
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
* * *
19868032 AACACGCCAAACAAAAGCTCATAAGAGCTTATCCAACCGT
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
* *
19868072 AACACACCAAATAGAAGCTCATAAGAGCTGATCCAACCGA
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
** * * * * *
19868112 AACATGCCAAATAGTAGCTCATAAGAGTTGATCTAATCGT
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
**
19868152 AACATGCCAAACAGAA
1 AACACACCAAACAGAA
19868168 AGTATAACAT
Statistics
Matches: 225, Mismatches: 30, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
39 2 0.01
40 221 0.98
41 2 0.01
ACGTcount: A:0.42, C:0.27, G:0.15, T:0.16
Consensus pattern (40 bp):
AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCGT
Found at i:19871562 original size:182 final size:182
Alignment explanation
Indices: 19871255--19871620 Score: 732
Period size: 182 Copynumber: 2.0 Consensus size: 182
19871245 AATTATGATT
19871255 TAGGGACTAAATTGAAAAGTTATAAAATTCATGGAAAAATTCTAAATTTTATGAATTTCATGGGC
1 TAGGGACTAAATTGAAAAGTTATAAAATTCATGGAAAAATTCTAAATTTTATGAATTTCATGGGC
19871320 TGCAAATGTTAGATGTAAAAGTTGGGTAAGCTTGGAATAAGGATTAAATTGCATGAATTTCATTT
66 TGCAAATGTTAGATGTAAAAGTTGGGTAAGCTTGGAATAAGGATTAAATTGCATGAATTTCATTT
19871385 TCCGAGCCTAGGGACGAAATCATAATTTATCAAAAGTATAGGGGAAAAATGA
131 TCCGAGCCTAGGGACGAAATCATAATTTATCAAAAGTATAGGGGAAAAATGA
19871437 TAGGGACTAAATTGAAAAGTTATAAAATTCATGGAAAAATTCTAAATTTTATGAATTTCATGGGC
1 TAGGGACTAAATTGAAAAGTTATAAAATTCATGGAAAAATTCTAAATTTTATGAATTTCATGGGC
19871502 TGCAAATGTTAGATGTAAAAGTTGGGTAAGCTTGGAATAAGGATTAAATTGCATGAATTTCATTT
66 TGCAAATGTTAGATGTAAAAGTTGGGTAAGCTTGGAATAAGGATTAAATTGCATGAATTTCATTT
19871567 TCCGAGCCTAGGGACGAAATCATAATTTATCAAAAGTATAGGGGAAAAATGA
131 TCCGAGCCTAGGGACGAAATCATAATTTATCAAAAGTATAGGGGAAAAATGA
19871619 TA
1 TA
19871621 ATTTTTCCTA
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
182 184 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.31
Consensus pattern (182 bp):
TAGGGACTAAATTGAAAAGTTATAAAATTCATGGAAAAATTCTAAATTTTATGAATTTCATGGGC
TGCAAATGTTAGATGTAAAAGTTGGGTAAGCTTGGAATAAGGATTAAATTGCATGAATTTCATTT
TCCGAGCCTAGGGACGAAATCATAATTTATCAAAAGTATAGGGGAAAAATGA
Found at i:19872230 original size:25 final size:25
Alignment explanation
Indices: 19872185--19872254 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
19872175 GTTTCTTGTT
* *
19872185 GAGCTTCCTGAT-TAATGGCTCTCCA
1 GAGCTTCCCGATAT-ATGGCTCACCA
* **
19872210 GAGCTTCCCGATATATTGCTCACTT
1 GAGCTTCCCGATATATGGCTCACCA
*
19872235 GAACTTCCCGATATATGGCT
1 GAGCTTCCCGATATATGGCT
19872255 ATTTGGAGCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCACCA
Found at i:19872266 original size:25 final size:25
Alignment explanation
Indices: 19872210--19872302 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 25
19872200 TGGCTCTCCA
* *
19872210 GAGCTTCCCGATATATTGCTCACTT-
1 GAGCTTCCCGATATATGGCT-ATTTG
*
19872235 GAACTTCCCGATATATGGCTATTTG
1 GAGCTTCCCGATATATGGCTATTTG
* *
19872260 GAGCTTCCCGAT-TAATGGCTCTTCG
1 GAGCTTCCCGATAT-ATGGCTATTTG
* *
19872285 GAGCTACCCGTTAT-TGGC
1 GAGCTTCCCGATATATGGC
19872303 ACACATGAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
24 8 0.14
25 48 0.84
26 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTATTTG
Found at i:19872273 original size:75 final size:73
Alignment explanation
Indices: 19872184--19872345 Score: 186
Period size: 75 Copynumber: 2.2 Consensus size: 73
19872174 AGTTTCTTGT
* * * *
19872184 TGAGCTTCCTGATTAATGGCTCTCCAGAGCTTCCCGATATATT-GCTCACTTGAACTTCCCGATA
1 TGAGCTTCCCGATTAATGGCTCTCCAGAGCTACCCG-T-TATTGGCACACATGAACTTCCCGAT-
19872248 TATGGCTATT-
63 TATGGCTATTA
* * * *
19872258 TGGAGCTTCCCGATTAATGGCTCTTCGGAGCTACCCGTTATTGGCACACATGAGCTTCCTGATTA
1 T-GAGCTTCCCGATTAATGGCTCTCCAGAGCTACCCGTTATTGGCACACATGAACTTCCCGATTA
*
19872323 TGGCTCTTA
65 TGGCTATTA
19872332 TGAGCTTCCC-ATTA
1 TGAGCTTCCCGATTA
19872346 TATAGCCTAG
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
72 4 0.05
73 22 0.29
74 19 0.25
75 31 0.41
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (73 bp):
TGAGCTTCCCGATTAATGGCTCTCCAGAGCTACCCGTTATTGGCACACATGAACTTCCCGATTAT
GGCTATTA
Found at i:19872400 original size:25 final size:25
Alignment explanation
Indices: 19872321--19872403 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
19872311 GCTTCCTGAT
* *
19872321 TATGGCTCTTATGAGCTTCCCATTA
1 TATGGCTCTTATGAGCTTCTCGTTA
* * * *
19872346 TATAGC-CTAGATAAGCCTCTCGTTA
1 TATGGCTCT-TATGAGCTTCTCGTTA
*
19872371 CATGGCTCTTATGAGCTTCTCGTTA
1 TATGGCTCTTATGAGCTTCTCGTTA
19872396 TATGGCTC
1 TATGGCTC
19872404 GAGAGAGGGC
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
24 2 0.05
25 40 0.91
26 2 0.05
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (25 bp):
TATGGCTCTTATGAGCTTCTCGTTA
Found at i:19880444 original size:24 final size:23
Alignment explanation
Indices: 19880384--19880450 Score: 62
Period size: 24 Copynumber: 2.8 Consensus size: 23
19880374 TCCCCGATTA
** *
19880384 ATGGCTCTTCGGAGCTACCAATT
1 ATGGCTCTTATGAGCTTCCAATT
**
19880407 ATTGGCTCGCATGAGCTTCCTAATT
1 A-TGGCTCTTATGAGCTTCC-AATT
*
19880432 ATGGCTCTTATGATCTTCC
1 ATGGCTCTTATGAGCTTCC
19880451 CGTTATACAG
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
23 1 0.03
24 28 0.82
25 5 0.15
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (23 bp):
ATGGCTCTTATGAGCTTCCAATT
Found at i:19889611 original size:17 final size:17
Alignment explanation
Indices: 19889569--19889611 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
19889559 AACCATATAT
*
19889569 CTCGTCCAAACCACAAAA
1 CTCG-CCAAAACACAAAA
* *
19889587 TTCACCAAAACACAAAA
1 CTCGCCAAAACACAAAA
19889604 CTCGCCAA
1 CTCGCCAA
19889612 TCAACGCATA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.47, C:0.37, G:0.05, T:0.12
Consensus pattern (17 bp):
CTCGCCAAAACACAAAA
Found at i:19891636 original size:17 final size:17
Alignment explanation
Indices: 19891594--19891636 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
19891584 AACCATATAT
*
19891594 CTCGTCCAAACCACAAAA
1 CTCG-CCAAAACACAAAA
* *
19891612 TTCACCAAAACACAAAA
1 CTCGCCAAAACACAAAA
19891629 CTCGCCAA
1 CTCGCCAA
19891637 TCAACGCATA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.47, C:0.37, G:0.05, T:0.12
Consensus pattern (17 bp):
CTCGCCAAAACACAAAA
Found at i:19893895 original size:50 final size:50
Alignment explanation
Indices: 19893767--19894014 Score: 232
Period size: 50 Copynumber: 4.9 Consensus size: 50
19893757 TGATAATAAC
* ** * *
19893767 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTC-TGTACG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATAT-CG
* * **
19893818 --GCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * * ** *
19893866 GTGCCCATGCCATGTCCCAGACATAGTCTTACGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * *
19893916 ATTCCAACGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATAGTCTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA---TC---G
*
19893972 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
19894015 TTACCCAAAT
Statistics
Matches: 162, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
48 7 0.04
49 35 0.22
50 78 0.48
53 2 0.01
56 40 0.25
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
Found at i:19904319 original size:10 final size:10
Alignment explanation
Indices: 19904304--19904350 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
19904294 GAAAATGTTG
19904304 AATTTTAATT
1 AATTTTAATT
*
19904314 AATTTTATATCA
1 AATTTTA-AT-T
*
19904326 AATTTTGATT
1 AATTTTAATT
19904336 AATTTTAATT
1 AATTTTAATT
19904346 -ATTTT
1 AATTTT
19904351 CGACAGATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 5 0.16
10 16 0.52
11 4 0.13
12 6 0.19
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:19915316 original size:24 final size:24
Alignment explanation
Indices: 19915287--19915335 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
19915277 CATTTACAAC
19915287 ATAAATACTAAAAGATCAAAAATA
1 ATAAATACTAAAAGATCAAAAATA
* *
19915311 ATAAATACTAAGAGATCGAAAATA
1 ATAAATACTAAAAGATCAAAAATA
19915335 A
1 A
19915336 ATGACTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.20
Consensus pattern (24 bp):
ATAAATACTAAAAGATCAAAAATA
Found at i:19935868 original size:40 final size:40
Alignment explanation
Indices: 19935770--19936032 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
19935760 TCCTCGTTCA
* * * * *
19935770 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
19935809 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
19935849 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
19935889 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
19935929 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
19935969 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
19936009 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
19936033 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:19943821 original size:40 final size:40
Alignment explanation
Indices: 19943723--19943985 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
19943713 TCCTCGTTCA
* * * * *
19943723 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
19943762 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
19943802 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
19943842 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
19943882 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
19943922 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
19943962 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
19943986 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:19946574 original size:16 final size:16
Alignment explanation
Indices: 19946553--19946586 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
19946543 AAGAAAGAAT
19946553 GGTTTATTTAAAATTA
1 GGTTTATTTAAAATTA
19946569 GGTTTATTTAAAATTA
1 GGTTTATTTAAAATTA
19946585 GG
1 GG
19946587 ATTGACTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (16 bp):
GGTTTATTTAAAATTA
Found at i:19946782 original size:14 final size:16
Alignment explanation
Indices: 19946753--19946785 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
19946743 TTTTACATTC
19946753 ATAATTTAATTATATA
1 ATAATTTAATTATATA
19946769 ATAA-TTAA-TATATA
1 ATAATTTAATTATATA
19946783 ATA
1 ATA
19946786 TGTCATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 4 0.24
16 4 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATTTAATTATATA
Found at i:19949012 original size:25 final size:24
Alignment explanation
Indices: 19948975--19949034 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
19948965 TAAACATTAA
***
19948975 AAAATATT-AAAATACCTATATAT
1 AAAATATTAAAAATAAAAATATAT
19948998 AAAATATTAATAAATAAAAATATAT
1 AAAATATTAA-AAATAAAAATATAT
19949023 AAAATTATTAAA
1 AAAA-TATTAAA
19949035 TATTAAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 8 0.26
24 1 0.03
25 16 0.52
26 6 0.19
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (24 bp):
AAAATATTAAAAATAAAAATATAT
Found at i:19949049 original size:23 final size:24
Alignment explanation
Indices: 19948972--19949061 Score: 69
Period size: 23 Copynumber: 3.8 Consensus size: 24
19948962 ATGTAAACAT
* *
19948972 TAAAAAA-TATTAAAATACCTATATA
1 TAAAAAATTATT-AAATA-TTAAATA
* * *
19948997 TAAAATATTAATAAATA-AAAATA
1 TAAAAAATTATTAAATATTAAATA
*
19949020 TATAAAATTATTAAATATTAAAT-
1 TAAAAAATTATTAAATATTAAATA
*
19949043 TAAAAAATAATATAAATAT
1 TAAAAAATTAT-TAAATAT
19949062 ATTTTTTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
23 27 0.52
24 11 0.21
25 11 0.21
26 3 0.06
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (24 bp):
TAAAAAATTATTAAATATTAAATA
Found at i:19955765 original size:19 final size:19
Alignment explanation
Indices: 19955720--19955765 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
19955710 CATAATTTTT
19955720 ATATTATTACTAATATATA
1 ATATTATTACTAATATATA
* *
19955739 ATAATATTAACTAATTTA-A
1 ATATTATT-ACTAATATATA
19955758 ATATTATT
1 ATATTATT
19955766 TAAATGAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATTATTACTAATATATA
Found at i:19955879 original size:13 final size:13
Alignment explanation
Indices: 19955854--19955890 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
19955844 GCTAAACACT
*
19955854 CAAA-TTTTAAAC
1 CAAACTTTTCAAC
19955866 CAAACTTTTCAAC
1 CAAACTTTTCAAC
19955879 CAAACTTTTCAA
1 CAAACTTTTCAA
19955891 AAGTAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.32
Consensus pattern (13 bp):
CAAACTTTTCAAC
Found at i:19955900 original size:13 final size:13
Alignment explanation
Indices: 19955882--19955921 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
19955872 TTTCAACCAA
*
19955882 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
* *
19955895 AGTTTTCAAAAAC
1 ACTTTTCAAAAGC
19955908 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
19955921 A
1 A
19955922 ATGAAGAACT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:19959782 original size:13 final size:11
Alignment explanation
Indices: 19959760--19959810 Score: 52
Period size: 10 Copynumber: 4.6 Consensus size: 11
19959750 TCCACTTTAT
19959760 AAATTTTACAA
1 AAATTTTACAA
19959771 AAATACTTTAC-A
1 AAAT--TTTACAA
19959783 AAATTTTACAA
1 AAATTTTACAA
*
19959794 AAATCTT-CAA
1 AAATTTTACAA
*
19959804 AACTTTT
1 AAATTTT
19959811 TTATTTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
10 13 0.38
11 11 0.32
12 5 0.15
13 5 0.15
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (11 bp):
AAATTTTACAA
Found at i:19962750 original size:18 final size:19
Alignment explanation
Indices: 19962718--19962754 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
19962708 TTCATCATTT
*
19962718 CATATTCCATTTCTCATCC
1 CATATTCCATCTCTCATCC
19962737 CATA-TCCATCTCTCATCC
1 CATATTCCATCTCTCATCC
19962755 TTGCCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.22, C:0.41, G:0.00, T:0.38
Consensus pattern (19 bp):
CATATTCCATCTCTCATCC
Found at i:19971560 original size:18 final size:17
Alignment explanation
Indices: 19971523--19971556 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
19971513 ACATCATTAG
19971523 ATTGATTTTAATTTTTT
1 ATTGATTTTAATTTTTT
19971540 ATTGATTTTAATTTTTT
1 ATTGATTTTAATTTTTT
19971557 TATTTATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
ATTGATTTTAATTTTTT
Found at i:19972890 original size:14 final size:13
Alignment explanation
Indices: 19972841--19972891 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 13
19972831 AACTAGTCAT
19972841 AGAGATAATTGAGG
1 AGAGAT-ATTGAGG
* *
19972855 AGGGATATT-TGG
1 AGAGATATTGAGG
19972867 AGAGAT-TTGAGG
1 AGAGATATTGAGG
19972879 AGAGAATATTGAG
1 AGAG-ATATTGAG
19972892 ATTTGGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 2 0.07
12 13 0.43
13 5 0.17
14 10 0.33
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.25
Consensus pattern (13 bp):
AGAGATATTGAGG
Found at i:19973916 original size:27 final size:27
Alignment explanation
Indices: 19973885--19974273 Score: 396
Period size: 27 Copynumber: 14.4 Consensus size: 27
19973875 CCCCAAAATA
* *
19973885 GGTAAAATGACCAAAATACCCCTAAAG
1 GGTAAAATGACCGAAATACCCCTATAG
* **
19973912 GGTAAAATGA-CTATTTTACCCCTAATA-
1 GGTAAAATGACCGA-AATACCCCT-ATAG
* *
19973939 GATGAAAATAACCGAAATACCCCTATAG
1 GGT-AAAATGACCGAAATACCCCTATAG
** *
19973967 GGTAAAATGATTGAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
19973994 GGTAAAATGACCAAAAT-GCCCTCATAA
1 GGTAAAATGACCGAAATACCCCT-ATAG
* * *
19974021 GTTAAAATGACCTAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
19974048 GGTAAAATGATCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
* *
19974075 GGTAAAATGACTGAAATACCTCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
19974102 GGTAACATGACCAAAATACACCC-ATAG
1 GGTAAAATGACCGAAATAC-CCCTATAG
*
19974129 GGTAAAATGACCGAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
19974156 GGTAAAATGACCAAAATACTCCC-ATAA
1 GGTAAAATGACCGAAATAC-CCCTATAG
* * *
19974183 GATAAAATGACCGAAATACCCCCAGAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
19974210 GGTAAAATGTCTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
19974237 GGTAAAATGAACGAAATACCCC-ATAG
1 GGTAAAATGACCGAAATACCCCTATAG
19974263 GGTAAAATGAC
1 GGTAAAATGAC
19974274 TGTTATACCC
Statistics
Matches: 294, Mismatches: 55, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
26 27 0.09
27 238 0.81
28 27 0.09
29 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:19974546 original size:26 final size:26
Alignment explanation
Indices: 19974507--19974587 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
19974497 TTTACCACAT
*
19974507 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* * *
19974533 ATACTGATATTGGCAGCTCTGCTACG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
19974559 ATGCT-ATTACTGGCAGCTTTGCTGCG
1 ATACTGA-TACTGGCAGCTTTGCTGCG
19974585 ATA
1 ATA
19974588 TTAGTGTGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 1 0.02
26 44 0.98
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:19982769 original size:211 final size:209
Alignment explanation
Indices: 19982142--19982770 Score: 972
Period size: 210 Copynumber: 3.0 Consensus size: 209
19982132 GTTAGGAACA
19982142 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATAGTAGATGATTTTAAATTTTTGAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATAGTAGATGATTTTAAATTTTTGAT
* *
19982207 TATTAGACTACAGAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCGGAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
*
19982272 GAAATAGAAAATACAGGGAAACGAGCATGCTACTATGTACGATAAATTGTTGAATTCGTGATTGT
131 GAAATAGAAAATA-AGGGAAACGAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19982337 TTGGTTAATTAAACT
195 TTGGTTGATTAAACT
* *
19982352 TGTATATAGGTTGATTGTATTTACTATAAAATTTGCATGATAGTAGATGATTTTAAATTTTTTAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATAGTAGATGATTTTAAATTTTTGAT
* * * * * *
19982417 TATTAGACTACTAAGCTCTACATATTACATTATAAATAGGCATTAAACAATTGTACGTACCAGAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
* *
19982482 GAAATAGAAAATAATGGGAAACGAGCATGCTACTAAGTATGATAAATTGTTGAATTCGTGATTCT
131 GAAATAGAAAATAA-GGGAAACGAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19982547 TTAGTTGATTAAACT
195 TTGGTTGATTAAACT
* * *
19982562 TGTATATAGGTTGATTGTATTTACTATAAATTTTTCCATGGTAGTAGATGATTTTAAAATTTTGA
1 TGTATATAGGTTGATTGTATTTACTATAAA-TTTTGCATGATAGTAGATGATTTTAAATTTTTGA
* *
19982627 TT-TTCAGACTACAAAGTTTTATATATTACACTATAAAGAGGCATTAAGCAATTGAACGTACCAG
65 TTATT-AGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAG
* * * * *
19982691 ATGAAATAGAAAATATAGGGAAACAAGCATGCTACTATTTATGATAAATTATTGAATTTGTAATT
129 ATGAAATAGAAAATA-AGGGAAACGAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATT
*
19982756 GTTTGGATGATTAAA
193 GTTTGGTTGATTAAA
19982771 TTTTTGAATA
Statistics
Matches: 378, Mismatches: 37, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
209 1 0.00
210 225 0.60
211 151 0.40
212 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (209 bp):
TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATAGTAGATGATTTTAAATTTTTGAT
TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
GAAATAGAAAATAAGGGAAACGAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGTT
TGGTTGATTAAACT
Found at i:19983944 original size:210 final size:210
Alignment explanation
Indices: 19983575--19984203 Score: 972
Period size: 210 Copynumber: 3.0 Consensus size: 210
19983565 GTTAAGAACA
*
19983575 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGACTTTAAATTTTTTAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
* *
19983640 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGCCATTAAGCAATTGAACGTACCAAAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
** *
19983705 GAAATAGAAAATACTTGGAAACAAGCATGCTATTATGTATGATAAATTGTTGAATTCGTGATTGT
131 GAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19983770 TTGGTTGATTAATCT
196 TTGGTTGATTAAACT
* *
19983785 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATAGTAGATGATTTTACATTTTTTAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
* * * *
19983850 TATTAGACTACTAAGTTCTACATATTACATTATAAATAGGCATTAAACAATTGAACGTACCAGAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
* * *
19983915 GAAATAGAAAATACAGGGAAACGAGCATGCTACTAAGTATGATAAATTGTTGAATTCGTGATTCT
131 GAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19983980 TTAGTTGATTAAACT
196 TTGGTTGATTAAACT
* * * *
19983995 TGTATATAGGTTGATTGTATTTACTATAAATTTTTCCATGGTAGTAGATGATTTTAAAATTTTGA
1 TGTATATAGGTTGATTGTATTTACTATAAA-TTTTACATGATAGTAGATGATTTTAAATTTTTTA
* *
19984060 TT-TTCAGACTACAAAGTTTTATATATTACACTATAAAGAGGCATTAAGCAATTGAACGTACCAG
65 TTATT-AGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAG
* * * * *
19984124 ATGAAATAGAAAATATAGGGAAACAAGCATGCTACTATTTATGATAAATTATTGAATTTGTAATT
129 ATGAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATT
*
19984189 GTTTGGATGATTAAA
194 GTTTGGTTGATTAAA
19984204 TTTTTGAATA
Statistics
Matches: 379, Mismatches: 38, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
210 225 0.59
211 154 0.41
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (210 bp):
TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
GAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
TTGGTTGATTAAACT
Found at i:19985377 original size:210 final size:210
Alignment explanation
Indices: 19985008--19985636 Score: 972
Period size: 210 Copynumber: 3.0 Consensus size: 210
19984998 GTTAAGAACA
*
19985008 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGACTTTAAATTTTTTAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
* *
19985073 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGCCATTAAGCAATTGAACGTACCAAAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
** *
19985138 GAAATAGAAAATACTTGGAAACAAGCATGCTATTATGTATGATAAATTGTTGAATTCGTGATTGT
131 GAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19985203 TTGGTTGATTAATCT
196 TTGGTTGATTAAACT
* *
19985218 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATAGTAGATGATTTTACATTTTTTAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
* * * *
19985283 TATTAGACTACTAAGTTCTACATATTACATTATAAATAGGCATTAAACAATTGAACGTACCAGAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
* * *
19985348 GAAATAGAAAATACAGGGAAACGAGCATGCTACTAAGTATGATAAATTGTTGAATTCGTGATTCT
131 GAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19985413 TTAGTTGATTAAACT
196 TTGGTTGATTAAACT
* * * *
19985428 TGTATATAGGTTGATTGTATTTACTATAAATTTTTCCATGGTAGTAGATGATTTTAAAATTTTGA
1 TGTATATAGGTTGATTGTATTTACTATAAA-TTTTACATGATAGTAGATGATTTTAAATTTTTTA
* *
19985493 TT-TTCAGACTACAAAGTTTTATATATTACACTATAAAGAGGCATTAAGCAATTGAACGTACCAG
65 TTATT-AGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAG
* * * * *
19985557 ATGAAATAGAAAATATAGGGAAACAAGCATGCTACTATTTATGATAAATTATTGAATTTGTAATT
129 ATGAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATT
*
19985622 GTTTGGATGATTAAA
194 GTTTGGTTGATTAAA
19985637 TTTTTGAATA
Statistics
Matches: 379, Mismatches: 38, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
210 225 0.59
211 154 0.41
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (210 bp):
TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
GAAATAGAAAATACAGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
TTGGTTGATTAAACT
Found at i:19986810 original size:210 final size:210
Alignment explanation
Indices: 19986441--19987069 Score: 956
Period size: 210 Copynumber: 3.0 Consensus size: 210
19986431 GTTAAGAACA
*
19986441 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGACTTTAAATTTTTTAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
* *
19986506 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGCCATTAAGCAATTGAACGTACCAAAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
* * *
19986571 GAAATAGAAAATACTTGGAAACAAGCATGCTATTATGTATGATAAATTGTTGAATTCGTGATTGT
131 GAAATAGAAAATAATGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19986636 TTGGTTGATTAATCT
196 TTGGTTGATTAAACT
* *
19986651 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATAGTAGATGATTTTACATTTTTTAT
1 TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
* * * * *
19986716 TATTAGACTACTAAGTTCTACATATTACATTATAAATAGGCATTAAACAATTGTACGTACCAGAT
66 TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
* * *
19986781 GAAATAGAAAATAATGGGAAACGAGCATGCTACTAAGTATGATAAATTGTTGAATTCGTGATTCT
131 GAAATAGAAAATAATGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
*
19986846 TTAGTTGATTAAACT
196 TTGGTTGATTAAACT
* * * *
19986861 TGTATATAGGTTGATTGTATTTACTATAAATTTTTCCATGGTAGTAGATGATTTTAAAATTTTGA
1 TGTATATAGGTTGATTGTATTTACTATAAA-TTTTACATGATAGTAGATGATTTTAAATTTTTTA
* *
19986926 TT-TTCAGACTACAAAGTTTTATATATTACACTATAAAGAGGCATTAAGCAATTGAACGTACCAG
65 TTATT-AGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAG
* * * *
19986990 ATGAAATAGAAAAT-ATAGGGAAACAAGCATGCTACTATTTATGATAAATTATTGAATTTGTAAT
129 ATGAAATAGAAAATAAT-GGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGAT
*
19987054 TGTTTGGATGATTAAA
193 TGTTTGGTTGATTAAA
19987070 TTTTTGAATA
Statistics
Matches: 377, Mismatches: 39, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
210 226 0.60
211 151 0.40
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (210 bp):
TGTATATAGGTTGATTGTATTTACTATAAATTTTACATGATAGTAGATGATTTTAAATTTTTTAT
TATTAGACTACAAAGTTCTATATATTACACTATAAATAGGCATTAAGCAATTGAACGTACCAGAT
GAAATAGAAAATAATGGGAAACAAGCATGCTACTATGTATGATAAATTGTTGAATTCGTGATTGT
TTGGTTGATTAAACT
Found at i:19987725 original size:13 final size:13
Alignment explanation
Indices: 19987707--19987734 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
19987697 AATCATGTAA
19987707 CTTTTTTCCTTAT
1 CTTTTTTCCTTAT
19987720 CTTTTTTCCTTAT
1 CTTTTTTCCTTAT
19987733 CT
1 CT
19987735 ATATATTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.25, G:0.00, T:0.68
Consensus pattern (13 bp):
CTTTTTTCCTTAT
Found at i:19996589 original size:25 final size:25
Alignment explanation
Indices: 19996503--19996590 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 25
19996493 CCTATACATG
* * *
19996503 TATGCTCACACGAGCTGTGAATC-A
1 TATGCTCTCACGAGCTATAAATCGA
* * *
19996527 GTATGCTTTCACAAGCTGTAAATCGA
1 -TATGCTCTCACGAGCTATAAATCGA
19996553 TATGCTCTCACGAGCTATAAATCGA
1 TATGCTCTCACGAGCTATAAATCGA
*
19996578 TGTGCTCTCACGA
1 TATGCTCTCACGA
19996591 ATTATGGAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
25 53 0.98
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (25 bp):
TATGCTCTCACGAGCTATAAATCGA
Found at i:20019843 original size:11 final size:11
Alignment explanation
Indices: 20019822--20019880 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
20019812 TTTCCTCTCA
20019822 TTTACTTTTTGT
1 TTTA-TTTTTGT
20019834 TTTATTTTTG-
1 TTTATTTTTGT
*
20019844 TTTATTATTGT
1 TTTATTTTTGT
*
20019855 ATTATTTATT-T
1 TTTATTT-TTGT
*
20019866 CTTTATTTTTAT
1 -TTTATTTTTGT
20019878 TTT
1 TTT
20019881 TATTATTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
10 9 0.23
11 17 0.44
12 13 0.33
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTATTTTTGT
Found at i:20019859 original size:8 final size:7
Alignment explanation
Indices: 20019835--20019892 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 7
20019825 ACTTTTTGTT
20019835 TTATTT-
1 TTATTTA
*
20019841 TTGTTTA
1 TTATTTA
20019848 TTATTGTA
1 TTATT-TA
20019856 TTATTTA
1 TTATTTA
*
20019863 TTTCTTTA
1 -TTATTTA
20019871 TT-TTTA
1 TTATTTA
20019877 TT-TTTA
1 TTATTTA
20019883 TTATTATA
1 TTATT-TA
20019891 TT
1 TT
20019893 GTTATCATTC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
6 17 0.39
7 10 0.23
8 17 0.39
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.74
Consensus pattern (7 bp):
TTATTTA
Found at i:20019888 original size:3 final size:3
Alignment explanation
Indices: 20019868--20019993 Score: 60
Period size: 3 Copynumber: 41.7 Consensus size: 3
20019858 ATTTATTTCT
* * * * *
20019868 TTA TTT TTA TTT TTA TTA TTA -TA TTG TTA TCA TTC TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * **
20019915 ATA ATA TTA TTA -TA CTGAA GTTA TTA CTA TTA CTA TTA TTA TTA CAA
1 TTA TTA TTA TTA TTA -T-TA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
20019962 TTA TTA TTTA TTG TTA TTA GT- TTC TTA TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT
20019994 CTACTATTAA
Statistics
Matches: 89, Mismatches: 28, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
2 5 0.06
3 78 0.88
4 4 0.04
5 2 0.02
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:20021693 original size:10 final size:10
Alignment explanation
Indices: 20021658--20021694 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
20021648 ATTTTGTTAT
* *
20021658 AAAAAAATAT
1 AAAAAAAGAA
20021668 AAAAAAAGAA
1 AAAAAAAGAA
20021678 AAAAAAAGAA
1 AAAAAAAGAA
20021688 AAAAAAA
1 AAAAAAA
20021695 ATTATTGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.89, C:0.00, G:0.05, T:0.05
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:20031297 original size:40 final size:40
Alignment explanation
Indices: 20031266--20031356 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
20031256 GGACTAAGAT
* *
20031266 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
20031306 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
20031346 CCGAAGGCATT
1 CCGAAGGCATT
20031357 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:20040282 original size:40 final size:40
Alignment explanation
Indices: 20040198--20040381 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
20040188 TTGAATGCTG
* * * *
20040198 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
20040237 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
20040278 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
20040318 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
20040358 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
20040382 GTATGAGTTA
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:20040335 original size:80 final size:81
Alignment explanation
Indices: 20040198--20040378 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 81
20040188 TTGAATGCTG
* *
20040198 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
20040262 TGTGCGAGTTATTAAT
66 CGTGCGAGTTATTAAA
**
20040278 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
20040339 ATTCGTGCGAGTTATTAAA
63 ATTCGTGCGAGTTATTAAA
20040358 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
20040379 ATTGTATGAG
Statistics
Matches: 91, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
79 2 0.02
80 80 0.88
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTATTAAA
Found at i:20042678 original size:22 final size:23
Alignment explanation
Indices: 20042647--20042696 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
20042637 TCATAATTTA
*
20042647 AAAAGCTATAAAAAT-AAATAAAT
1 AAAAGCTAT-AAAATCAAATAAAG
20042670 AAAA-CTATAAAATCAAATAAAG
1 AAAAGCTATAAAATCAAATAAAG
20042692 AAAAG
1 AAAAG
20042697 GAATAAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 15 0.62
23 4 0.17
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (23 bp):
AAAAGCTATAAAATCAAATAAAG
Found at i:20043589 original size:27 final size:25
Alignment explanation
Indices: 20043532--20043617 Score: 129
Period size: 25 Copynumber: 3.5 Consensus size: 25
20043522 ATTATATATT
*
20043532 AAATATTTATTTTTTATTTTTAATC
1 AAATATATATTTTTTATTTTTAATC
20043557 AAATATATATTTTTTATTTTTAATC
1 AAATATATATTTTTTATTTTTAATC
* * *
20043582 AAATATATATATTTTATATTT-ATT
1 AAATATATATTTTTTATTTTTAATC
20043606 AAATATATATTT
1 AAATATATATTT
20043618 AATATGGGTC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 13 0.23
25 43 0.77
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
AAATATATATTTTTTATTTTTAATC
Found at i:20046295 original size:6 final size:6
Alignment explanation
Indices: 20046284--20046315 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
20046274 AAAATTGCAA
*
20046284 ATTTCC ATTTCC ATTTTC ATTTCC ATTTCC AT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC AT
20046316 ATTTGGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.00, T:0.53
Consensus pattern (6 bp):
ATTTCC
Found at i:20048135 original size:67 final size:67
Alignment explanation
Indices: 20048017--20048152 Score: 173
Period size: 67 Copynumber: 2.0 Consensus size: 67
20048007 TTTTTGTACA
** * * * ** *
20048017 ACTATATTCCTGACACTTGGAAACTTTCCAAGTGACAGAGTTCGTCGGCCATTGAGTGGGTATCC
1 ACTATATTCCCAACACTTGGAAACTTTCCAAGAGACAAAGTTCGTCAGCCATCAAGCGGGTATCC
20048082 CG
66 CG
* * *
20048084 ACTATATTCCCAACACTTGGAAACTTTTCAAGAGATAAAGTTTGTCAGCCATCAAGCGGGTATCC
1 ACTATATTCCCAACACTTGGAAACTTTCCAAGAGACAAAGTTCGTCAGCCATCAAGCGGGTATCC
20048149 CG
66 CG
20048151 AC
1 AC
20048153 CAGGTCATAT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (67 bp):
ACTATATTCCCAACACTTGGAAACTTTCCAAGAGACAAAGTTCGTCAGCCATCAAGCGGGTATCC
CG
Found at i:20050276 original size:41 final size:41
Alignment explanation
Indices: 20050231--20050335 Score: 122
Period size: 42 Copynumber: 2.6 Consensus size: 41
20050221 CCCTGGTTGT
* * * * *
20050231 ACTTCGGTTCCCCTAAATTGCACATACGTGCCCTTGTTTGA
1 ACTTCGGTACCCCTGAATTGCACATACATGCCCCTATTTGA
** *
20050272 ACTTCAATACCCCCTGAATTGCACATACATGCCCCTATTTGT
1 ACTTCGGTA-CCCCTGAATTGCACATACATGCCCCTATTTGA
20050314 ACTTCGGTACCCCTGAA-TGCAC
1 ACTTCGGTACCCCTGAATTGCAC
20050336 TTTTGTGCCC
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 5 0.09
41 14 0.26
42 34 0.64
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.30
Consensus pattern (41 bp):
ACTTCGGTACCCCTGAATTGCACATACATGCCCCTATTTGA
Found at i:20061609 original size:23 final size:22
Alignment explanation
Indices: 20061557--20061609 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
20061547 TCCACGTCTT
*
20061557 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
20061579 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
20061602 TTTCTTTT
1 TTTCTTTT
20061610 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:20066030 original size:27 final size:26
Alignment explanation
Indices: 20065998--20066067 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 26
20065988 GCGTGTGTTT
20065998 CAACATTCGGCCCATGTGAAGAGTATA
1 CAACATTCGGCCCATGTGAAGAGT-TA
** * *
20066025 CAACATTTTGCCCATGTGATGAGTTT
1 CAACATTCGGCCCATGTGAAGAGTTA
*
20066051 CTCACATTCGGCCCATG
1 C-AACATTCGGCCCATG
20066068 CATTACACGT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
CAACATTCGGCCCATGTGAAGAGTTA
Found at i:20066266 original size:21 final size:21
Alignment explanation
Indices: 20066242--20066281 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
20066232 ATTTTGCATG
20066242 CCAGCACT-CCAATTTTGACCA
1 CCAGCA-TGCCAATTTTGACCA
*
20066263 CCAGCATGCCTATTTTGAC
1 CCAGCATGCCAATTTTGAC
20066282 TCGCATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.25, C:0.35, G:0.12, T:0.28
Consensus pattern (21 bp):
CCAGCATGCCAATTTTGACCA
Found at i:20069498 original size:30 final size:30
Alignment explanation
Indices: 20069462--20069526 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
20069452 GTTAGAGGGG
** *
20069462 TGGAGGGCACATTTCAGGCGGCACCCAGAA
1 TGGAGGGCACATAACAGGCAGCACCCAGAA
* * *
20069492 TGGAGGGTACCTAACAGGCAGCACCCAGAG
1 TGGAGGGCACATAACAGGCAGCACCCAGAA
20069522 TGGAG
1 TGGAG
20069527 TCGATGTCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.25, G:0.35, T:0.12
Consensus pattern (30 bp):
TGGAGGGCACATAACAGGCAGCACCCAGAA
Found at i:20071441 original size:50 final size:50
Alignment explanation
Indices: 20071383--20071519 Score: 175
Period size: 50 Copynumber: 2.7 Consensus size: 50
20071373 TATTGGGATT
* *
20071383 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* * *
20071433 ATGAGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* ** * * *
20071483 ATGAAAACTCCCATGTAAGACCATATCTGGGATATGG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGG
20071520 AATTGGAAGT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:20081136 original size:3 final size:3
Alignment explanation
Indices: 20081128--20081193 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
20081118 AAATTGTTAG
20081128 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
20081176 CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT
20081194 AATTTATAGT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:20086326 original size:24 final size:23
Alignment explanation
Indices: 20086283--20086349 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 23
20086273 CATAAATTAT
20086283 TTTTTTAAAAATATTTTATTTTA
1 TTTTTTAAAAATATTTTATTTTA
*
20086306 TTTTTT--AAA-ATTTT-TTGTA
1 TTTTTTAAAAATATTTTATTTTA
*
20086325 -TTTTTAATAAT-TTTTA-TTTA
1 TTTTTTAAAAATATTTTATTTTA
20086345 TTTTT
1 TTTTT
20086350 ATTTTTTGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
18 5 0.14
19 4 0.11
20 14 0.39
21 7 0.19
23 6 0.17
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.70
Consensus pattern (23 bp):
TTTTTTAAAAATATTTTATTTTA
Found at i:20086339 original size:20 final size:19
Alignment explanation
Indices: 20086279--20086350 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 19
20086269 TTAACATAAA
*
20086279 TTATTT-TTTTAAAAATATT
1 TTATTTATTTTTAAAAT-TT
20086298 TTATTTTATTTTTTAAAATTT
1 TTA-TTTA-TTTTTAAAATTT
*
20086319 TT-TGTATTTTTAATAATTT
1 TTATTTATTTTTAA-AATTT
20086338 TTATTTATTTTTA
1 TTATTTATTTTTA
20086351 TTTTTTGAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
18 7 0.16
19 13 0.29
20 12 0.27
21 4 0.09
22 9 0.20
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.69
Consensus pattern (19 bp):
TTATTTATTTTTAAAATTT
Found at i:20086340 original size:35 final size:35
Alignment explanation
Indices: 20086301--20086369 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
20086291 AAATATTTTA
*
20086301 TTTTATTT-TTTAAAATTTTTTGTATTTTTAATAAT
1 TTTTATTTATTT-AAATTTTTTGAATTTTTAATAAT
** *
20086336 TTTTATTTATTTTTATTTTTTGAATTTTTTATAA
1 TTTTATTTATTTAAATTTTTTGAATTTTTAATAA
20086370 AGCACATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 26 0.90
36 3 0.10
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (35 bp):
TTTTATTTATTTAAATTTTTTGAATTTTTAATAAT
Found at i:20086563 original size:4 final size:4
Alignment explanation
Indices: 20086554--20086583 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
20086544 CCGTTTTGAT
20086554 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
20086584 ATCCTTGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:20087442 original size:28 final size:28
Alignment explanation
Indices: 20087402--20087457 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
20087392 CTTGGAGCAA
20087402 GCTTGTAGAAGAAATATTTGAACTCTTT
1 GCTTGTAGAAGAAATATTTGAACTCTTT
20087430 GCTTGTAGAAGAAATATTTGAACTCTTT
1 GCTTGTAGAAGAAATATTTGAACTCTTT
20087458 CATTTTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (28 bp):
GCTTGTAGAAGAAATATTTGAACTCTTT
Found at i:20093634 original size:34 final size:34
Alignment explanation
Indices: 20093596--20093668 Score: 78
Period size: 34 Copynumber: 2.1 Consensus size: 34
20093586 TTGATTTACG
20093596 TATTTGACAACTTAAATATAAAT-T-ATTCTATTTA
1 TATTTGAC-A-TTAAATATAAATATGATTCTATTTA
* * * *
20093630 TATTTTACATTATATATAAATATGTTTTTATTTA
1 TATTTGACATTAAATATAAATATGATTCTATTTA
20093664 TATTT
1 TATTT
20093669 AAATATTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
32 11 0.33
33 2 0.06
34 20 0.61
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (34 bp):
TATTTGACATTAAATATAAATATGATTCTATTTA
Found at i:20093849 original size:4 final size:4
Alignment explanation
Indices: 20093840--20093864 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
20093830 TATATCATGC
20093840 AAGA AAGA AAGA AAGA AAGA AAGA A
1 AAGA AAGA AAGA AAGA AAGA AAGA A
20093865 GATGGAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:20099026 original size:25 final size:25
Alignment explanation
Indices: 20098991--20099042 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
20098981 TTCCGGGGTC
*
20098991 TGATATGAGCTTACAATAGCTCTTT
1 TGATATAAGCTTACAATAGCTCTTT
20099016 TGATATAAGCTTACAATAGCTCTTT
1 TGATATAAGCTTACAATAGCTCTTT
20099041 TG
1 TG
20099043 TTAACTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (25 bp):
TGATATAAGCTTACAATAGCTCTTT
Found at i:20101379 original size:85 final size:85
Alignment explanation
Indices: 20101235--20101448 Score: 376
Period size: 85 Copynumber: 2.5 Consensus size: 85
20101225 TAACCGTTAC
* *
20101235 ACGGTGGAATCAGCACTTAGCAACCACC-TTATAATCAATGATACGGGGAATCAGCACATAGCAA
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATGCGGGGAATCAGCACATAGCAA
* *
20101299 CCCCTTTCACAGTCAAGGAT
66 CCCCCTTCACAATCAAGGAT
20101319 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATGCGGGGAATCAGCACATAGCAA
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATGCGGGGAATCAGCACATAGCAA
*
20101384 CCCCCTTCACAATTAAGGAT
66 CCCCCTTCACAATCAAGGAT
20101404 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATGC
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATGC
20101449 AGATTCACAT
Statistics
Matches: 124, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
84 28 0.23
85 96 0.77
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (85 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATGCGGGGAATCAGCACATAGCAA
CCCCCTTCACAATCAAGGAT
Found at i:20101382 original size:42 final size:43
Alignment explanation
Indices: 20101235--20101446 Score: 272
Period size: 43 Copynumber: 5.0 Consensus size: 43
20101225 TAACCGTTAC
*
20101235 ACGGTGGAATCAGCACTTAGCAACCACC-TTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
* * * *
20101277 ACGG-GGAATCAGCACATAGCAACC-CCTTTCACAGTCAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTT-ATATTCAATGAT
20101319 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
* * * * * *
20101362 GCGG-GGAATCAGCACATAGCAACCCCCTTCACAATT-AAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTA-TATTCAATGAT
20101404 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
20101447 GCAGATTCAC
Statistics
Matches: 143, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
40 2 0.01
41 21 0.15
42 52 0.36
43 63 0.44
44 5 0.03
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (43 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
Found at i:20101534 original size:51 final size:51
Alignment explanation
Indices: 20101458--20101624 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 51
20101448 CAGATTCACA
* *
20101458 TAGTAGCATGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGGTACACG
* * * * *
20101509 TAGTAGCCTGCACATAATACTACACACGTGATCGA--AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATCA-CTATCCGGTACACG
* *
20101560 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTATCCGGTACACG
*
20101610 TAGTAGCCTACACAT
1 TAGTAGCCTGCACAT
20101625 TTGACTCAAA
Statistics
Matches: 96, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
50 24 0.25
51 69 0.72
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGGTACACG
Found at i:20118263 original size:14 final size:15
Alignment explanation
Indices: 20118237--20118266 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
20118227 CAATATAATA
20118237 AATAAATAAATATTT
1 AATAAATAAATATTT
20118252 AATAAA-AAATATTT
1 AATAAATAAATATTT
20118266 A
1 A
20118267 CGGGCTCGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATAAATAAATATTT
Found at i:20121456 original size:22 final size:22
Alignment explanation
Indices: 20121431--20121498 Score: 93
Period size: 22 Copynumber: 3.1 Consensus size: 22
20121421 GTGTGTTGGT
* *
20121431 AAAGTTGGGGGTTTCAAGGGGG
1 AAAGTTGGGGATATCAAGGGGG
*
20121453 AAAGTTGGGGATATCAGGGGGG
1 AAAGTTGGGGATATCAAGGGGG
*
20121475 AAAGTTGGGGATATC-AGGGAG
1 AAAGTTGGGGATATCAAGGGGG
20121496 AAA
1 AAA
20121499 ATTTATAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 7 0.17
22 34 0.83
ACGTcount: A:0.31, C:0.04, G:0.46, T:0.19
Consensus pattern (22 bp):
AAAGTTGGGGATATCAAGGGGG
Found at i:20122411 original size:14 final size:15
Alignment explanation
Indices: 20122394--20122460 Score: 54
Period size: 14 Copynumber: 4.7 Consensus size: 15
20122384 TCATAAATCA
20122394 TAAACCC-TAACCCT
1 TAAACCCATAACCCT
*
20122408 TAAACCCATGA-CCT
1 TAAACCCATAACCCT
* *
20122422 CT-AACCCTTAAACCT
1 -TAAACCCATAACCCT
*
20122437 TAAACCC-CAACCCT
1 TAAACCCATAACCCT
20122451 TAAA-CCATAA
1 TAAACCCATAA
20122461 ACCATGATCC
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
13 2 0.05
14 29 0.69
15 11 0.26
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.21
Consensus pattern (15 bp):
TAAACCCATAACCCT
Found at i:20122489 original size:15 final size:15
Alignment explanation
Indices: 20122469--20122497 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
20122459 AAACCATGAT
20122469 CCATAATCCCTAAAA
1 CCATAATCCCTAAAA
20122484 CCATAATCCCTAAA
1 CCATAATCCCTAAA
20122498 CCTTAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAATCCCTAAAA
Found at i:20125091 original size:27 final size:28
Alignment explanation
Indices: 20125029--20125114 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 28
20125019 GGCTATAATA
* *
20125029 TTAAGAATTTTATTAAATT-ATATATTTTT
1 TTAA-AATATTATTAAATTAAT-TATTATT
* *
20125058 ATTAAATTA-TATTTAA-TAATTATTATT
1 -TTAAAATATTATTAAATTAATTATTATT
*
20125085 TTAAAATATTATTAAATTATTTATTATT
1 TTAAAATATTATTAAATTAATTATTATT
20125113 TT
1 TT
20125115 TATTAATAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
26 7 0.15
27 13 0.28
28 20 0.43
29 2 0.04
30 4 0.09
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (28 bp):
TTAAAATATTATTAAATTAATTATTATT
Found at i:20125319 original size:46 final size:44
Alignment explanation
Indices: 20125228--20125321 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
20125218 ATTACAACAT
* *
20125228 CATTCCATTCAACCAAACACAAGAATAGTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACAAAAGAATACTATTACGCCTCTATTC
* *
20125272 CATTCCATTCAATCAAACAAAAGGATTACCTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACAAAA-GAATA-CTATTACGCCTCTATTC
20125318 CATT
1 CATT
20125322 ACACCTCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 20 0.45
45 4 0.09
46 20 0.45
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.30
Consensus pattern (44 bp):
CATTCCATTCAACCAAACAAAAGAATACTATTACGCCTCTATTC
Found at i:20125328 original size:16 final size:16
Alignment explanation
Indices: 20125303--20125338 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
20125293 AGGATTACCT
*
20125303 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
20125319 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
20125335 ATTA
1 ATTA
20125339 TAGCGAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.33, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:20125607 original size:35 final size:36
Alignment explanation
Indices: 20125543--20125631 Score: 126
Period size: 35 Copynumber: 2.5 Consensus size: 36
20125533 ACCCCTGAAT
* *
20125543 CCCTAAACCTTAAATCCCTAGCTCTTAACCCTTAAC
1 CCCTAAACCTTAAATCCCTAACTCCTAACCCTTAAC
** *
20125579 GTCTAACCCTTAAA-CCCTAACTCCTAACCCTTAAC
1 CCCTAAACCTTAAATCCCTAACTCCTAACCCTTAAC
20125614 CCCTAAACCTTAAATCCC
1 CCCTAAACCTTAAATCCC
20125632 AACCCTTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 30 0.68
36 14 0.32
ACGTcount: A:0.31, C:0.40, G:0.02, T:0.26
Consensus pattern (36 bp):
CCCTAAACCTTAAATCCCTAACTCCTAACCCTTAAC
Found at i:20125613 original size:28 final size:28
Alignment explanation
Indices: 20125582--20125640 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
20125572 CCTTAACGTC
* * *
20125582 TAACCCTTAAACCCTAACTCCTAACCCT
1 TAACCCCTAAACCCTAAATCCCAACCCT
*
20125610 TAACCCCTAAACCTTAAATCCCAACCCT
1 TAACCCCTAAACCCTAAATCCCAACCCT
20125638 TAA
1 TAA
20125641 ACCATAATCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.41, G:0.00, T:0.24
Consensus pattern (28 bp):
TAACCCCTAAACCCTAAATCCCAACCCT
Found at i:20125617 original size:21 final size:21
Alignment explanation
Indices: 20125566--20125619 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
20125556 ATCCCTAGCT
*
20125566 CTTAACCCTTAACGTCTAACC
1 CTTAACCCCTAACGTCTAACC
*
20125587 CTTAAACCCTAAC-TCCTAACC
1 CTTAACCCCTAACGT-CTAACC
20125608 CTTAACCCCTAA
1 CTTAACCCCTAA
20125620 ACCTTAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.31, C:0.41, G:0.02, T:0.26
Consensus pattern (21 bp):
CTTAACCCCTAACGTCTAACC
Found at i:20125618 original size:14 final size:14
Alignment explanation
Indices: 20125591--20125654 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
20125581 CTAACCCTTA
*
20125591 AACCC-TAACTCCT
1 AACCCTTAACCCCT
20125604 AACCCTTAACCCCT
1 AACCCTTAACCCCT
* *
20125618 AAACCTTAAATCCC-
1 AACCCTT-AACCCCT
* *
20125632 AACCCTTAAACCAT
1 AACCCTTAACCCCT
*
20125646 AATCCTTAA
1 AACCCTTAA
20125655 TCCATAATCC
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
13 9 0.22
14 27 0.66
15 5 0.12
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (14 bp):
AACCCTTAACCCCT
Found at i:20125635 original size:21 final size:21
Alignment explanation
Indices: 20125611--20125691 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
20125601 CCTAACCCTT
20125611 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCTTAAATCCC
* * *
20125632 AACCCTTAAACCAT-AATCCTT
1 AACCCCTAAACCTTAAATCC-C
* * * *
20125653 AATCCATAATCCCTAAAT-CC
1 AACCCCTAAACCTTAAATCCC
20125673 ATACTCCCTAAACCTTAAA
1 A-AC-CCCTAAACCTTAAA
20125692 ATATGAACTC
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
20 6 0.14
21 24 0.55
22 14 0.32
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCCTAAACCTTAAATCCC
Found at i:20125673 original size:15 final size:15
Alignment explanation
Indices: 20125638--20125684 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
20125628 TCCCAACCCT
20125638 TAAA-CCATAAT-CC
1 TAAATCCATAATCCC
*
20125651 TTAATCCATAATCCC
1 TAAATCCATAATCCC
*
20125666 TAAATCCATACTCCC
1 TAAATCCATAATCCC
20125681 TAAA
1 TAAA
20125685 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 3 0.10
14 7 0.24
15 19 0.66
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:20125893 original size:14 final size:14
Alignment explanation
Indices: 20125874--20125923 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
20125864 AACCTTAAAT
20125874 CCCTAACTCTTAAC
1 CCCTAACTCTTAAC
20125888 CCCTAACGTC-TAAC
1 CCCTAAC-TCTTAAC
*
20125902 CCCTAAACACTTAAC
1 CCCT-AACTCTTAAC
*
20125917 CCTTAAC
1 CCCTAAC
20125924 CCCTAAACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.32, C:0.42, G:0.02, T:0.24
Consensus pattern (14 bp):
CCCTAACTCTTAAC
Found at i:20125929 original size:29 final size:28
Alignment explanation
Indices: 20125874--20125929 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
20125864 AACCTTAAAT
* **
20125874 CCCTAACTCTTAACCCCTAACGTCTAAC
1 CCCTAACACTTAACCCCTAACCCCTAAC
*
20125902 CCCTAAACACTTAACCCTTAACCCCTAA
1 CCCT-AACACTTAACCCCTAACCCCTAA
20125930 ACCTTAAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.32, C:0.43, G:0.02, T:0.23
Consensus pattern (28 bp):
CCCTAACACTTAACCCCTAACCCCTAAC
Found at i:20125980 original size:15 final size:15
Alignment explanation
Indices: 20125931--20125980 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
20125921 AACCCCTAAA
20125931 CCTTAAATCCCA-AC-
1 CCTTAAAT-CCATACT
*
20125945 CCTTAAAT-CATAAT
1 CCTTAAATCCATACT
*
20125959 CCCTAAATCCATACT
1 CCTTAAATCCATACT
20125974 CCTTAAA
1 CCTTAAA
20125981 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
12 2 0.07
13 1 0.03
14 15 0.52
15 11 0.38
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (15 bp):
CCTTAAATCCATACT
Found at i:20126218 original size:23 final size:26
Alignment explanation
Indices: 20126191--20126245 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
20126181 TAAATAATAG
*
20126191 TATTTT-AATT-TTTCCATGTGT-TT
1 TATTTTAAATTATTTCCATGTGTCAT
*
20126214 TATTTTAAATTATTTCTATGTGTCAT
1 TATTTTAAATTATTTCCATGTGTCAT
20126240 TATTTT
1 TATTTT
20126246 TTTCTGAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 6 0.22
24 4 0.15
25 10 0.37
26 7 0.26
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.64
Consensus pattern (26 bp):
TATTTTAAATTATTTCCATGTGTCAT
Found at i:20126549 original size:123 final size:122
Alignment explanation
Indices: 20126330--20126688 Score: 447
Period size: 123 Copynumber: 2.9 Consensus size: 122
20126320 TAAAATGTTT
* *
20126330 TTAGCGGCGCTTTTTCAAAAATGT-CACTAAAGCCCCCAGCATTAGCGGCGCTTTTCCAAAAACT
1 TTAGCGGCGCTTTTTCAAAAAT-TCCACTAAAGCCCCCAACATTAGCGGCGCTTTT-CAAAAACG
* * ** *
20126394 CAGCTAAAACCCCCAGCATTAGCGGCGCTTTTTATAAAACGCTGCTAAAACACTGAGCA
64 CCGCTAAAACCCCGAGCATTAGCGGCGCTTTTTATAAAACGCTGCTAAAACACCAAACA
* *
20126453 TTAGCGGCGCTTTTTCAAAAATTCCACTAAAGCCCCCAATATTAGCGGCATCTTTTCAAAAACGC
1 TTAGCGGCGCTTTTTCAAAAATTCCACTAAAGCCCCCAACATTAGCGGC-GCTTTTCAAAAACGC
* * *
20126518 CGCTAAAACCCCGAGCATTAGCGGCGCTTTTTAAAAAATG-TCGTTAAAACACCAAACA
65 CGCTAAAACCCCGAGCATTAGCGGCGCTTTTTATAAAACGCT-GCTAAAACACCAAACA
** * * *
20126576 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-ACCCCAAGCATTAGCGGCGCATTTTCAAAAATG
1 TTAGCGGCGCTTTTTCAAAAATTCCACTAAAGCCCCCAA-CATTAGCGGCGC-TTTTCAAAAACG
* * *
20126640 CCGCTAAAGCCCCGAGCATTAGCGGCACTTTTT-TGAAAACGCCGCTAAA
64 CCGCTAAAACCCCGAGCATTAGCGGCGCTTTTTAT-AAAACGCTGCTAAA
20126689 GCCCCGAAAG
Statistics
Matches: 204, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
122 9 0.04
123 190 0.93
124 5 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (122 bp):
TTAGCGGCGCTTTTTCAAAAATTCCACTAAAGCCCCCAACATTAGCGGCGCTTTTCAAAAACGCC
GCTAAAACCCCGAGCATTAGCGGCGCTTTTTATAAAACGCTGCTAAAACACCAAACA
Found at i:20126684 original size:41 final size:41
Alignment explanation
Indices: 20126330--20126695 Score: 385
Period size: 41 Copynumber: 8.9 Consensus size: 41
20126320 TAAAATGTTT
* * * * *
20126330 TTAGCGGCGCTTTTTCAAAAATGTCACTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * * *
20126371 TTAGCGGCGCTTTTCCAAAAACTCAGCTAAAACCCCCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * *
20126412 TTAGCGGCGCTTTTT-ATAAAACGCTGCTAAAACACTGAGCA
1 TTAGCGGCGCTTTTTCA-AAAACGCCGCTAAAACCCCGAGCA
** * * * **
20126453 TTAGCGGCGCTTTTTCAAAAATTCCACTAAAGCCCCCAATA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
*
20126494 TTAGCGGC-ATCTTTTCAAAAACGCCGCTAAAACCCCGAGCA
1 TTAGCGGCGCT-TTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * * * * * *
20126535 TTAGCGGCGCTTTTTAAAAAATGTCGTTAAAACACCAAACA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
*
20126576 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCAAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * *
20126617 TTAGCGGCGCATTTTCAAAAATGCCGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* ** *
20126658 TTAGCGGCACTTTTTTGAAAACGCCGCTAAAGCCCCGA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGA
20126696 AAGGTAAGAA
Statistics
Matches: 267, Mismatches: 54, Indels: 8
0.81 0.16 0.02
Matches are distributed among these distances:
40 2 0.01
41 263 0.99
42 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
Found at i:20126866 original size:12 final size:12
Alignment explanation
Indices: 20126849--20126875 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
20126839 TTTTTTATCC
20126849 AAGTGCCGCTAA
1 AAGTGCCGCTAA
20126861 AAGTGCCGCTAA
1 AAGTGCCGCTAA
20126873 AAG
1 AAG
20126876 CTTATTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (12 bp):
AAGTGCCGCTAA
Found at i:20140936 original size:122 final size:124
Alignment explanation
Indices: 20140719--20141066 Score: 594
Period size: 122 Copynumber: 2.8 Consensus size: 124
20140709 TTATTTCGAG
* * * * ** *
20140719 TTGACGTTTCTG-GTCAAATTGTATAAAATCGCTTCTACCAAGATGCCATTTGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATTGCTTCTACGAGGATGTTATTTGAGTAGAAATTGT
20140783 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAAT-A-TTTTT
65 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
20140841 TTGACGTTTCTGAGCAAATAGTATAAAATTGCTTCTACGAGGATGTTATTTGAGTAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATTGCTTCTACGAGGATGTTATTTGAGTAGAAATTGTG
20140906 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
*
20140965 TTGACGTTTCTGAGCAAATAGTATAAAACTGCTTCTACGAGGATGTTATTTGAGTAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATTGCTTCTACGAGGATGTTATTTGAGTAGAAATTGTG
20141030 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
20141067 CAAGTTTGGG
Statistics
Matches: 215, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
122 107 0.50
123 2 0.01
124 106 0.49
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (124 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATTGCTTCTACGAGGATGTTATTTGAGTAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
Found at i:20144218 original size:53 final size:53
Alignment explanation
Indices: 20144156--20144265 Score: 220
Period size: 53 Copynumber: 2.1 Consensus size: 53
20144146 AGTTCCAGAT
20144156 AAAACATTTTACCAAATCTAACATTATGTAAAAGTATGTAAAATTATTAAGCC
1 AAAACATTTTACCAAATCTAACATTATGTAAAAGTATGTAAAATTATTAAGCC
20144209 AAAACATTTTACCAAATCTAACATTATGTAAAAGTATGTAAAATTATTAAGCC
1 AAAACATTTTACCAAATCTAACATTATGTAAAAGTATGTAAAATTATTAAGCC
20144262 AAAA
1 AAAA
20144266 AAATTTTGTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (53 bp):
AAAACATTTTACCAAATCTAACATTATGTAAAAGTATGTAAAATTATTAAGCC
Found at i:20144353 original size:35 final size:35
Alignment explanation
Indices: 20144311--20144384 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
20144301 TGTAAAATTA
20144311 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
20144346 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
20144381 GGTT
1 GGTT
20144385 TTTAATTAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.43
Consensus pattern (35 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
Found at i:20144391 original size:24 final size:27
Alignment explanation
Indices: 20144340--20144600 Score: 134
Period size: 29 Copynumber: 10.0 Consensus size: 27
20144330 ATTAGGTTAG
20144340 GGTTAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTAGGG-TTTT-ATTAAATTA
20144369 GGTTAGGGTTAGGG-TTT-TT-AATTA
1 GGTTAGGGTTAGGGTTTTATTAAATTA
* * *
20144393 AGTTA--GTTA--ATTGTTAGTAAAATTA
1 GGTTAGGGTTAGGGTT-TTA-TTAAATTA
** *
20144418 AATTAGGGTT----TTTAATTAAATTA
1 GGTTAGGGTTAGGGTTTTATTAAATTA
*
20144441 GTTTAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTAGGG-TTTT-ATTAAATTA
20144470 GGTTAGGGTTAGGG-TTT-TT-AATTA
1 GGTTAGGGTTAGGGTTTTATTAAATTA
* * *
20144494 AGTTA--GTTA--ATTGTTAGTAAAATTA
1 GGTTAGGGTTAGGGTT-TTA-TTAAATTA
** *
20144519 AATTAGGGTT----TTTAATTAAATTA
1 GGTTAGGGTTAGGGTTTTATTAAATTA
*
20144542 GTTTAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTAGGG-TTTT-ATTAAATTA
20144571 GGTTAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTAGGG-TTTT-ATTAAATTA
20144600 G
1 G
20144601 TTAATTGTTA
Statistics
Matches: 186, Mismatches: 20, Indels: 52
0.72 0.08 0.20
Matches are distributed among these distances:
21 2 0.01
22 12 0.06
23 30 0.16
24 24 0.13
25 26 0.14
27 12 0.06
28 6 0.03
29 74 0.40
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (27 bp):
GGTTAGGGTTAGGGTTTTATTAAATTA
Found at i:20144409 original size:29 final size:29
Alignment explanation
Indices: 20144311--20144398 Score: 113
Period size: 29 Copynumber: 2.8 Consensus size: 29
20144301 TGTAAAATTA
20144311 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
1 GGTTAGGGTTTTTAATT-AA--A--TTA-GGTTAG
20144346 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
20144375 GGTTAGGGTTTTTAATTAAGTTAG
1 GGTTAGGGTTTTTAATTAAATTAG
20144399 TTAATTGTTA
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
29 29 0.56
30 3 0.06
32 1 0.02
34 2 0.04
35 17 0.33
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (29 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:20144454 original size:29 final size:29
Alignment explanation
Indices: 20144420--20144501 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
20144410 TAAAATTAAA
20144420 TTAGGGTTTTTAATTAAATTAGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAGTTTAGGG
*
20144449 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGTTTAGGG
*
20144478 TTAGGGTTTTTAATTAAGTTAGTT
1 TTAGGGTTTTTAATTAAATTAGTT
20144502 AATTGTTAGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGTTTAGGG
Found at i:20144481 original size:72 final size:72
Alignment explanation
Indices: 20144348--20144481 Score: 216
Period size: 72 Copynumber: 1.9 Consensus size: 72
20144338 AGGGTTAGGG
* **
20144348 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTAGTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGTTAAGGGTTAGTAA
20144413 AATTAAA
66 AATTAAA
*
20144420 TTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT-AGGGTTAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA-GTTAAGGGTTAG
20144482 GGTTTTTAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
72 54 0.95
73 3 0.05
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (72 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGTTAAGGGTTAGTAA
AATTAAA
Found at i:20144497 original size:101 final size:101
Alignment explanation
Indices: 20144302--20144736 Score: 753
Period size: 101 Copynumber: 4.2 Consensus size: 101
20144292 ATCAAAATAT
**
20144302 GTAAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAAT
1 GTAAAATTAAATTAGGGTTTTTAATTAAATTA-G-T----TTAGGGTTAGGGTTTTTAATTAAAT
20144367 TAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTA
60 TAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTA
20144409 GTAAAATTAAATTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
1 GTAAAATTAAATTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
20144474 AGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTA
66 AGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTA
20144510 GTAAAATTAAATTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
1 GTAAAATTAAATTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
*
20144575 AGGGTTAGGGTTTTTAATTAAATTAGTTAATTGTTA
66 AGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTA
* *
20144611 GTAAAATTAAATTAAGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTAATTAAATTAGGTT
1 GTAAAATTAAATTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
20144676 AGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTGTTA
66 AGGGTTAGGGTTTTTAATTAAGTTAGTTAA-T-TGTTA
20144714 GTAAAATTAAATTAGGGTTTTTA
1 GTAAAATTAAATTAGGGTTTTTA
20144737 TGACATCAAA
Statistics
Matches: 319, Mismatches: 7, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
101 259 0.81
102 1 0.00
103 27 0.08
105 1 0.00
106 1 0.00
107 30 0.09
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (101 bp):
GTAAAATTAAATTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
AGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTA
Found at i:20144509 original size:29 final size:28
Alignment explanation
Indices: 20144420--20144603 Score: 139
Period size: 29 Copynumber: 6.9 Consensus size: 28
20144410 TAAAATTAAA
20144420 TTAGGGTTTTTAATTAAATTAGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAG-TTAGGG
20144449 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTA-GTTAGGG
20144478 TTAGGGTTTTTAATT--A--AGTTA--G
1 TTAGGGTTTTTAATTAAATTAGTTAGGG
* * * * *
20144500 TTA--ATTGTTAGTAAAATTAAATTAGGG
1 TTAGGGTTTTTAATTAAATT-AGTTAGGG
*
20144527 TT----TTTAATTAAATT--AGT--TTAGGG
1 TTAGGGTTT--TT-AATTAAATTAGTTAGGG
20144550 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTA-GTTAGGG
20144579 TTAGGGTTTTTAATTAAATTAGTTA
1 TTAGGGTTTTTAATTAAATTAGTTA
20144604 ATTGTTAGTA
Statistics
Matches: 125, Mismatches: 10, Indels: 41
0.71 0.06 0.23
Matches are distributed among these distances:
20 6 0.05
22 5 0.04
23 8 0.06
24 8 0.06
25 9 0.07
26 4 0.03
27 9 0.07
28 6 0.05
29 69 0.55
30 1 0.01
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.47
Consensus pattern (28 bp):
TTAGGGTTTTTAATTAAATTAGTTAGGG
Found at i:20144582 original size:72 final size:72
Alignment explanation
Indices: 20144449--20144582 Score: 216
Period size: 72 Copynumber: 1.9 Consensus size: 72
20144439 TAGTTTAGGG
* **
20144449 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGTTAATTGTTAGTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGTTAAGGGTTAGTAA
20144514 AATTAAA
66 AATTAAA
*
20144521 TTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTT-AGGGTTAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA-GTTAAGGGTTAG
20144583 GGTTTTTAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
72 54 0.95
73 3 0.05
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (72 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGTTAAGGGTTAGTAA
AATTAAA
Found at i:20144611 original size:29 final size:28
Alignment explanation
Indices: 20144521--20144603 Score: 148
Period size: 29 Copynumber: 2.9 Consensus size: 28
20144511 TAAAATTAAA
20144521 TTAGGGTTTTTAATTAAATTAGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAG-TTAGGG
20144550 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTA-GTTAGGG
20144579 TTAGGGTTTTTAATTAAATTAGTTA
1 TTAGGGTTTTTAATTAAATTAGTTA
20144604 ATTGTTAGTA
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
28 4 0.08
29 48 0.91
30 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (28 bp):
TTAGGGTTTTTAATTAAATTAGTTAGGG
Found at i:20144611 original size:130 final size:130
Alignment explanation
Indices: 20144420--20144701 Score: 347
Period size: 130 Copynumber: 2.2 Consensus size: 130
20144410 TAAAATTAAA
* **
20144420 TTAGGGTTTTTAATTAAATTAGTTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG-GG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGTAA
** * * * *
20144484 TTTTTAATTAA-GTTAGTTAATTGTTAGTAAAATTA-AATTAGGGTTTTTAATTAAATTAGTTTA
66 AATTAAATTAAGGTT-GTTAA-T-TAAATAAAATTAGAATTAGGGTTTTTAATTAAATTAGGTTA
20144547 GGG
128 GGG
**
20144550 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA-GTTAATTGTTAGTA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTT-AGGGTTAGTA
* * * **
20144614 AAATTAAATTAAGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
65 AAATTAAATTAAGGTTGTTAATTAAATAAAATTAGAATTAGGGTTTTTAATTAAATTAGGTTAGG
20144679 G
130 G
*
20144680 TTAGGGTTTTTAATTAAGTTAG
1 TTAGGGTTTTTAATTAAATTAG
20144702 TTAATTGTGT
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
129 11 0.08
130 105 0.80
131 12 0.09
132 3 0.02
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (130 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGTAA
AATTAAATTAAGGTTGTTAATTAAATAAAATTAGAATTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:20144662 original size:29 final size:29
Alignment explanation
Indices: 20144626--20144701 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
20144616 ATTAAATTAA
20144626 GGTTTTTAATTAAATTAGATTAGGGTTAG
1 GGTTTTTAATTAAATTAGATTAGGGTTAG
*
20144655 GGTTTTTAATTAAATTAGGTTAGGGTTAG
1 GGTTTTTAATTAAATTAGATTAGGGTTAG
*
20144684 GGTTTTTAATTAAGTTAG
1 GGTTTTTAATTAAATTAG
20144702 TTAATTGTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (29 bp):
GGTTTTTAATTAAATTAGATTAGGGTTAG
Found at i:20145231 original size:18 final size:19
Alignment explanation
Indices: 20145196--20145231 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
20145186 CGGAAAAGGA
*
20145196 TACATATAAAGGGTTAGGG
1 TACATATAAAGGGCTAGGG
20145215 TACATAT-AAGGGCTAGG
1 TACATATAAAGGGCTAGG
20145232 AAACACACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.25
Consensus pattern (19 bp):
TACATATAAAGGGCTAGGG
Found at i:20145892 original size:7 final size:7
Alignment explanation
Indices: 20145882--20145906 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
20145872 TTATATACAT
20145882 AATACTA
1 AATACTA
20145889 AATACTA
1 AATACTA
20145896 AATACTA
1 AATACTA
20145903 AATA
1 AATA
20145907 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:20146695 original size:11 final size:10
Alignment explanation
Indices: 20146665--20146730 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
20146655 GCCATTGATG
*
20146665 AAAATATAAA
1 AAAATTTAAA
20146675 AAAATTTAAA
1 AAAATTTAAA
* *
20146685 ATTATTTTAAA
1 A-AAATTTAAA
*
20146696 AAAATATAAA
1 AAAATTTAAA
20146706 AAAATTTAAA
1 AAAATTTAAA
** *
20146716 ATTATTTTAA
1 AAAATTTAAA
20146726 AAAAT
1 AAAAT
20146731 AAAATTGAGG
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
10 35 0.81
11 8 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:20146700 original size:31 final size:31
Alignment explanation
Indices: 20146665--20146729 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
20146655 GCCATTGATG
20146665 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
20146696 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
20146727 AAA
1 AAA
20146730 TAAAATTGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAATATAAAAAAATTTAAAATTATTTTAAA
Found at i:20146712 original size:21 final size:20
Alignment explanation
Indices: 20146665--20146716 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
20146655 GCCATTGATG
* *
20146665 AAAATATAAAAAAATTTAAA
1 AAAATTTAAAAAAATATAAA
* *
20146685 ATTATTTTAAAAAAATATAAA
1 A-AAATTTAAAAAAATATAAA
20146706 AAAATTTAAAA
1 AAAATTTAAAA
20146717 TTATTTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATTTAAAAAAATATAAA
Found at i:20146956 original size:477 final size:477
Alignment explanation
Indices: 20146343--20147296 Score: 1908
Period size: 477 Copynumber: 2.0 Consensus size: 477
20146333 TGCGTCTCGG
20146343 GTCTCCACCTCTCGATCAACGCACTAATCAGTTTCGGGTCCAACTTGCATCCCCGACCTACTGTT
1 GTCTCCACCTCTCGATCAACGCACTAATCAGTTTCGGGTCCAACTTGCATCCCCGACCTACTGTT
20146408 GCCACGTGCTAAAAACCCGCTTCCCGTAGGTAGTTCTCTACTGACGGTGATGGAGGAGCATGCAT
66 GCCACGTGCTAAAAACCCGCTTCCCGTAGGTAGTTCTCTACTGACGGTGATGGAGGAGCATGCAT
20146473 ATTCCGGATATTGCATTCCAATACCCGATCTTTAAACTTTTATAACAAATAATAAATTAATAATT
131 ATTCCGGATATTGCATTCCAATACCCGATCTTTAAACTTTTATAACAAATAATAAATTAATAATT
20146538 ATCTAAAAATATATAAATAAAAAAATCTTAAATAATAATTAAAAATTAAATTTAATACTTACCAT
196 ATCTAAAAATATATAAATAAAAAAATCTTAAATAATAATTAAAAATTAAATTTAATACTTACCAT
20146603 TTTCATTTGCTCCACCGATATGTGATTCCTATCAAGACGAATCAATGATCCGGCCATTGATGAAA
261 TTTCATTTGCTCCACCGATATGTGATTCCTATCAAGACGAATCAATGATCCGGCCATTGATGAAA
20146668 ATATAAAAAAATTTAAAATTATTTTAAAAAAATATAAAAAAATTTAAAATTATTTTAAAAAATAA
326 ATATAAAAAAATTTAAAATTATTTTAAAAAAATATAAAAAAATTTAAAATTATTTTAAAAAATAA
20146733 AATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAGGAAATTGAGAGGAAAT
391 AATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAGGAAATTGAGAGGAAAT
20146798 TGAAATTAAATATGGGTTTCAA
456 TGAAATTAAATATGGGTTTCAA
20146820 GTCTCCACCTCTCGATCAACGCACTAATCAGTTTCGGGTCCAACTTGCATCCCCGACCTACTGTT
1 GTCTCCACCTCTCGATCAACGCACTAATCAGTTTCGGGTCCAACTTGCATCCCCGACCTACTGTT
20146885 GCCACGTGCTAAAAACCCGCTTCCCGTAGGTAGTTCTCTACTGACGGTGATGGAGGAGCATGCAT
66 GCCACGTGCTAAAAACCCGCTTCCCGTAGGTAGTTCTCTACTGACGGTGATGGAGGAGCATGCAT
20146950 ATTCCGGATATTGCATTCCAATACCCGATCTTTAAACTTTTATAACAAATAATAAATTAATAATT
131 ATTCCGGATATTGCATTCCAATACCCGATCTTTAAACTTTTATAACAAATAATAAATTAATAATT
20147015 ATCTAAAAATATATAAATAAAAAAATCTTAAATAATAATTAAAAATTAAATTTAATACTTACCAT
196 ATCTAAAAATATATAAATAAAAAAATCTTAAATAATAATTAAAAATTAAATTTAATACTTACCAT
20147080 TTTCATTTGCTCCACCGATATGTGATTCCTATCAAGACGAATCAATGATCCGGCCATTGATGAAA
261 TTTCATTTGCTCCACCGATATGTGATTCCTATCAAGACGAATCAATGATCCGGCCATTGATGAAA
20147145 ATATAAAAAAATTTAAAATTATTTTAAAAAAATATAAAAAAATTTAAAATTATTTTAAAAAATAA
326 ATATAAAAAAATTTAAAATTATTTTAAAAAAATATAAAAAAATTTAAAATTATTTTAAAAAATAA
20147210 AATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAGGAAATTGAGAGGAAAT
391 AATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAGGAAATTGAGAGGAAAT
20147275 TGAAATTAAATATGGGTTTCAA
456 TGAAATTAAATATGGGTTTCAA
20147297 AGAATTTTGG
Statistics
Matches: 477, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
477 477 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (477 bp):
GTCTCCACCTCTCGATCAACGCACTAATCAGTTTCGGGTCCAACTTGCATCCCCGACCTACTGTT
GCCACGTGCTAAAAACCCGCTTCCCGTAGGTAGTTCTCTACTGACGGTGATGGAGGAGCATGCAT
ATTCCGGATATTGCATTCCAATACCCGATCTTTAAACTTTTATAACAAATAATAAATTAATAATT
ATCTAAAAATATATAAATAAAAAAATCTTAAATAATAATTAAAAATTAAATTTAATACTTACCAT
TTTCATTTGCTCCACCGATATGTGATTCCTATCAAGACGAATCAATGATCCGGCCATTGATGAAA
ATATAAAAAAATTTAAAATTATTTTAAAAAAATATAAAAAAATTTAAAATTATTTTAAAAAATAA
AATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAGGAAATTGAGAGGAAAT
TGAAATTAAATATGGGTTTCAA
Found at i:20147172 original size:11 final size:10
Alignment explanation
Indices: 20147142--20147207 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
20147132 GCCATTGATG
*
20147142 AAAATATAAA
1 AAAATTTAAA
20147152 AAAATTTAAA
1 AAAATTTAAA
* *
20147162 ATTATTTTAAA
1 A-AAATTTAAA
*
20147173 AAAATATAAA
1 AAAATTTAAA
20147183 AAAATTTAAA
1 AAAATTTAAA
** *
20147193 ATTATTTTAA
1 AAAATTTAAA
20147203 AAAAT
1 AAAAT
20147208 AAAATTGAGG
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
10 35 0.81
11 8 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:20147177 original size:31 final size:31
Alignment explanation
Indices: 20147142--20147206 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
20147132 GCCATTGATG
20147142 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
20147173 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
20147204 AAA
1 AAA
20147207 TAAAATTGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAATATAAAAAAATTTAAAATTATTTTAAA
Found at i:20147189 original size:21 final size:20
Alignment explanation
Indices: 20147142--20147193 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
20147132 GCCATTGATG
* *
20147142 AAAATATAAAAAAATTTAAA
1 AAAATTTAAAAAAATATAAA
* *
20147162 ATTATTTTAAAAAAATATAAA
1 A-AAATTTAAAAAAATATAAA
20147183 AAAATTTAAAA
1 AAAATTTAAAA
20147194 TTATTTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATTTAAAAAAATATAAA
Found at i:20147265 original size:51 final size:51
Alignment explanation
Indices: 20147209--20147320 Score: 179
Period size: 51 Copynumber: 2.2 Consensus size: 51
20147199 TTAAAAAATA
* * *
20147209 AAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAGG
1 AAATTGAGAGGAAATTGAAATTAAATATGGATTTCAAAGAATTTTCGAAGG
* *
20147260 AAATTGAGAGGAAATTGAAATTAAATATGGGTTTCAAAGAATTTTGGAAGG
1 AAATTGAGAGGAAATTGAAATTAAATATGGATTTCAAAGAATTTTCGAAGG
20147311 AAATTGAGAG
1 AAATTGAGAG
20147321 AATTTTGGAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.43, C:0.02, G:0.27, T:0.29
Consensus pattern (51 bp):
AAATTGAGAGGAAATTGAAATTAAATATGGATTTCAAAGAATTTTCGAAGG
Found at i:20147322 original size:22 final size:22
Alignment explanation
Indices: 20147297--20147342 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
20147287 TGGGTTTCAA
20147297 AGAATTTTGGAAGGAAATTGAG
1 AGAATTTTGGAAGGAAATTGAG
20147319 AGAATTTTGGAAGGAAATTGAG
1 AGAATTTTGGAAGGAAATTGAG
20147341 AG
1 AG
20147343 GATTAGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.33, T:0.26
Consensus pattern (22 bp):
AGAATTTTGGAAGGAAATTGAG
Found at i:20160243 original size:18 final size:18
Alignment explanation
Indices: 20160220--20160257 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
20160210 TTTAAAAATA
20160220 TATATAAATTAA-AATTTT
1 TATAT-AATTAATAATTTT
*
20160238 TATATATTTAATAATTTT
1 TATATAATTAATAATTTT
20160256 TA
1 TA
20160258 ATTTTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TATATAATTAATAATTTT
Done.