Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 65 of 185
Found at i:20489457 original size:58 final size:60
Alignment explanation
Indices: 20489393--20489508 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 60
20489383 ATCACTTTAA
* * *
20489393 TATTAAAATCATATAATACTTA-T-CAAGATAAATATTATATTAAATTTAATATTAAATC
1 TATTAAAATAATAGAATACTTACTACAAGATAAATATTAAATTAAATTTAATATTAAATC
* *
20489451 TATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTATATTTAATATTAA
1 TATTAAAATAATAGAATACTTA-CTACAAGATAAATATTAAATTAAATTTAATATTAA
20489509 GATAGTTATT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 19 0.38
60 1 0.02
61 30 0.60
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (60 bp):
TATTAAAATAATAGAATACTTACTACAAGATAAATATTAAATTAAATTTAATATTAAATC
Found at i:20489591 original size:67 final size:71
Alignment explanation
Indices: 20489451--20489593 Score: 161
Period size: 67 Copynumber: 2.1 Consensus size: 71
20489441 ATATTAAATC
* * *
20489451 TATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTATATTTAATATTAAGATAGTT
1 TATTAAATTAATAAAATACTTA-CTACAAGATAAATATTAAATTATAATTAATATTAAAATAGTT
***
20489516 ATTTTAA
65 AAAATAA
* *
20489523 TATTAAATTAATAAAATAC-TA-T-CATGATAAGTATTAAATT-TAATTAATATTAAAACTA-TT
1 TATTAAATTAATAAAATACTTACTACAAGATAAATATTAAATTATAATTAATATTAAAA-TAGTT
20489583 AAAATAA
65 AAAATAA
20489590 TATT
1 TATT
20489594 TTTGGAATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
67 23 0.37
68 18 0.29
69 1 0.02
71 2 0.03
72 18 0.29
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (71 bp):
TATTAAATTAATAAAATACTTACTACAAGATAAATATTAAATTATAATTAATATTAAAATAGTTA
AAATAA
Found at i:20489881 original size:19 final size:19
Alignment explanation
Indices: 20489857--20489898 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
20489847 TTCGACCAAT
* *
20489857 TTTTGGGTCTCGATCTCAG
1 TTTTGGGTCTCGAGCCCAG
*
20489876 TTTTGGTTCTCGAGCCCAG
1 TTTTGGGTCTCGAGCCCAG
20489895 TTTT
1 TTTT
20489899 TTTATCTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.21, G:0.24, T:0.45
Consensus pattern (19 bp):
TTTTGGGTCTCGAGCCCAG
Found at i:20504404 original size:22 final size:21
Alignment explanation
Indices: 20504355--20504404 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
20504345 AAACATCGAC
* *
20504355 GTCATGACTTTGTTTTTTAAT
1 GTCATGACATTGTTTCTTAAT
* *
20504376 GCCATGACATTGTTCTCTTCAT
1 GTCATGACATTGTT-TCTTAAT
20504398 GTCATGA
1 GTCATGA
20504405 TGTTGCCAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.46
Consensus pattern (21 bp):
GTCATGACATTGTTTCTTAAT
Found at i:20511922 original size:81 final size:81
Alignment explanation
Indices: 20511787--20511943 Score: 314
Period size: 81 Copynumber: 1.9 Consensus size: 81
20511777 TTTTTTGCAG
20511787 AAATCACACCACTTAAGACTTTTGTCCTTGCTGCCTCAGCTGGGCTTTATTGGCATCAGAAGTCA
1 AAATCACACCACTTAAGACTTTTGTCCTTGCTGCCTCAGCTGGGCTTTATTGGCATCAGAAGTCA
20511852 TTAGGGCTGAAGCAAA
66 TTAGGGCTGAAGCAAA
20511868 AAATCACACCACTTAAGACTTTTGTCCTTGCTGCCTCAGCTGGGCTTTATTGGCATCAGAAGTCA
1 AAATCACACCACTTAAGACTTTTGTCCTTGCTGCCTCAGCTGGGCTTTATTGGCATCAGAAGTCA
20511933 TTAGGGCTGAA
66 TTAGGGCTGAA
20511944 TTCTCAAGTG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (81 bp):
AAATCACACCACTTAAGACTTTTGTCCTTGCTGCCTCAGCTGGGCTTTATTGGCATCAGAAGTCA
TTAGGGCTGAAGCAAA
Found at i:20518752 original size:21 final size:21
Alignment explanation
Indices: 20518728--20518768 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
20518718 ACCAAAAATT
20518728 TATTTCAAAAATTAAAAAAAG
1 TATTTCAAAAATTAAAAAAAG
* *
20518749 TATTTTAAAATTTAAAAAAA
1 TATTTCAAAAATTAAAAAAA
20518769 ATTAAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
TATTTCAAAAATTAAAAAAAG
Found at i:20518813 original size:21 final size:21
Alignment explanation
Indices: 20518739--20518819 Score: 73
Period size: 21 Copynumber: 3.9 Consensus size: 21
20518729 ATTTCAAAAA
20518739 TTAAAAAAAGTATTTTAAAA-T
1 TTAAAAAAA-TATTTTAAAATT
*
20518760 TTAAAAAAA-A-TTAAAAAGTAT
1 TTAAAAAAATATTTTAAAA-T-T
*
20518781 TT-TAAAAATA-TTTAAAATT
1 TTAAAAAAATATTTTAAAATT
20518800 TTAAAAAAAGTATTTTAAAA
1 TTAAAAAAA-TATTTTAAAA
20518820 ATATTTTAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
18 6 0.12
19 4 0.08
20 11 0.22
21 21 0.43
22 7 0.14
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (21 bp):
TTAAAAAAATATTTTAAAATT
Found at i:20518836 original size:17 final size:17
Alignment explanation
Indices: 20518814--20518859 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
20518804 AAAAAGTATT
20518814 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
*
20518831 TTAAAAAAATTTTAAAA
1 TTAAAAATATTTTAAAA
* *
20518848 ATAAATATATTT
1 TTAAAAATATTT
20518860 ATTATATCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:20523491 original size:27 final size:27
Alignment explanation
Indices: 20523461--20523512 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
20523451 ATGAGTAATT
20523461 AAAAACATGAATTAAAAATAAAAAATA
1 AAAAACATGAATTAAAAATAAAAAATA
*
20523488 AAAAACATGTATTAAAAATAAAAAA
1 AAAAACATGAATTAAAAATAAAAAA
20523513 AAATGCTCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (27 bp):
AAAAACATGAATTAAAAATAAAAAATA
Found at i:20524073 original size:20 final size:20
Alignment explanation
Indices: 20524045--20524090 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
20524035 CAATCGATCC
* *
20524045 CTATATTTTTTTGTTTCAAG
1 CTATTTTTTTTTCTTTCAAG
* *
20524065 CTATTTTTTTTTCTTTTATG
1 CTATTTTTTTTTCTTTCAAG
20524085 CTATTT
1 CTATTT
20524091 GAACTTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.15, C:0.11, G:0.07, T:0.67
Consensus pattern (20 bp):
CTATTTTTTTTTCTTTCAAG
Found at i:20525229 original size:22 final size:20
Alignment explanation
Indices: 20525201--20525254 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
20525191 TCAATTGTTT
20525201 AATTAGGGTTTAGCATTTATTA
1 AATTAGGGTTTAG--TTTATTA
*
20525223 AATTAGGGTTATTGTTTATTA
1 AATTAGGGTT-TAGTTTATTA
*
20525244 AATTAAGGTTT
1 AATTAGGGTTT
20525255 TAGTGTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 16 0.55
22 10 0.34
23 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (20 bp):
AATTAGGGTTTAGTTTATTA
Found at i:20525335 original size:21 final size:21
Alignment explanation
Indices: 20525310--20525352 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
20525300 GGAAAAATGA
20525310 TTATTATTAGGGTTTTGGGTT
1 TTATTATTAGGGTTTTGGGTT
20525331 TTATTATTAGGGTTTTGGGTT
1 TTATTATTAGGGTTTTGGGTT
20525352 T
1 T
20525353 GTTTAGAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.58
Consensus pattern (21 bp):
TTATTATTAGGGTTTTGGGTT
Found at i:20530755 original size:20 final size:19
Alignment explanation
Indices: 20530708--20530757 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
20530698 CAAGATAAAC
20530708 ATTAAATTAA--ATTTAAT
1 ATTAAATTAATCATTTAAT
20530725 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAATCA-TTTAAT
20530745 ATTAAATTAATCA
1 ATTAAATTAATCA
20530758 AATACTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 8 0.29
18 1 0.04
19 2 0.07
20 17 0.61
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (19 bp):
ATTAAATTAATCATTTAAT
Found at i:20531134 original size:180 final size:180
Alignment explanation
Indices: 20530832--20531194 Score: 548
Period size: 180 Copynumber: 2.0 Consensus size: 180
20530822 GAATAGTTAA
* *
20530832 TTCTAAATCAAATTATCTGGTAGAGTCCCATTAGGAGTATAACTCTTTCACTACTCAATCAACAA
1 TTCTAAATCAAATTATCTGGTAGAGTCCCAATAGGAGTATAACTCTTCCACTACTCAATCAACAA
* * * *
20530897 TGACCAATTGTCACCGGCCACTGGGACACCACCGTCGCAGCCACTAGCATCGCCGTGTCCGGTGA
66 TGACCAATCGTCACCGACCACTAGGACACCACCGTCGCAACCACTAGCATCGCCGTGTCCGGTGA
* * *
20530962 TGCAGGGGCGACACCCTTACAGCACCCTGAGCCGGTTCGATTGCTACTAG
131 TGCAGGGGAGACACACTTACAGCACCCAGAGCCGGTTCGATTGCTACTAG
* * *
20531012 TTCTAAATCAAATTCTCTGGTAGAGTCCCAATATGAGTATAACTCTTCCACTGCTCAATCAACAA
1 TTCTAAATCAAATTATCTGGTAGAGTCCCAATAGGAGTATAACTCTTCCACTACTCAATCAACAA
* * *
20531077 TGACCAATCG-CTGCCGACCATTAGGACACCACCGTCGCAACCACTGGCATCGCCGTGTCCGGTG
66 TGACCAATCGTC-ACCGACCACTAGGACACCACCGTCGCAACCACTAGCATCGCCGTGTCCGGTG
* * *
20531141 ATGCAGGTGAGACACACTTACAGCACTCAGAGCCGGTTCGATTGCTGCTAG
130 ATGCAGGGGAGACACACTTACAGCACCCAGAGCCGGTTCGATTGCTACTAG
20531192 TTC
1 TTC
20531195 GGTCTGAGTA
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
179 1 0.01
180 163 0.99
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (180 bp):
TTCTAAATCAAATTATCTGGTAGAGTCCCAATAGGAGTATAACTCTTCCACTACTCAATCAACAA
TGACCAATCGTCACCGACCACTAGGACACCACCGTCGCAACCACTAGCATCGCCGTGTCCGGTGA
TGCAGGGGAGACACACTTACAGCACCCAGAGCCGGTTCGATTGCTACTAG
Found at i:20531822 original size:86 final size:84
Alignment explanation
Indices: 20531711--20531893 Score: 226
Period size: 86 Copynumber: 2.2 Consensus size: 84
20531701 CTTTTATAAA
* * * * *
20531711 AAACGCTGCTAAAGAACATGGCCTTTAGTGGCGCTTTACCCACAAATGTCGCTAAAGAACATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTACCCACAAACGTCGCTAAA-AA-ATGAC
20531776 CTTTAAC-AGCGC-TTTACCCAC
64 CTTTAACGA-CGCTTTTA-CCAC
* ***
20531797 AAACGCCGCTAAAGAGCATGACCTTTAGCGACGCTTTTTTCACAAACGTCGCTAAAAAATGACCT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTACCCACAAACGTCGCTAAAAAATGACCT
*
20531862 TTAACGACGCTTTTATCAC
66 TTAACGACGCTTTTACCAC
20531881 AAACGCCGCTAAA
1 AAACGCCGCTAAA
20531894 AATACCGTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
84 31 0.36
85 7 0.08
86 47 0.55
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (84 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTACCCACAAACGTCGCTAAAAAATGACCT
TTAACGACGCTTTTACCAC
Found at i:20531895 original size:41 final size:42
Alignment explanation
Indices: 20531668--20531893 Score: 181
Period size: 43 Copynumber: 5.3 Consensus size: 42
20531658 TTATTTGAAA
* * ** * * *
20531668 AAACGCCGCTATAGAACATGGCCTTTAGTGGCGCTTTTATAAA
1 AAACGCCGCTAAAGAA-ATGACCTTTAACGACGCTTTTATCAC
* * ** * *
20531711 AAACGCTGCTAAAGAACATGGCCTTTAGTGGCGC-TTTACCCAC
1 AAACGCCGCTAAAGAA-ATGACCTTTAACGACGCTTTTA-TCAC
* * *
20531754 AAATGTCGCTAAAGAACATGACCTTTAAC-AGCGC-TTTACCCAC
1 AAACGCCGCTAAAGAA-ATGACCTTTAACGA-CGCTTTTA-TCAC
* * *
20531797 AAACGCCGCTAAAGAGCATGACCTTTAGCGACGCTTTTTTCAC
1 AAACGCCGCTAAAGA-AATGACCTTTAACGACGCTTTTATCAC
*
20531840 AAACGTCGCTAAA-AAATGACCTTTAACGACGCTTTTATCAC
1 AAACGCCGCTAAAGAAATGACCTTTAACGACGCTTTTATCAC
20531881 AAACGCCGCTAAA
1 AAACGCCGCTAAA
20531894 AATACCGTTT
Statistics
Matches: 155, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
41 36 0.23
42 5 0.03
43 110 0.71
44 4 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTAAAGAAATGACCTTTAACGACGCTTTTATCAC
Found at i:20537228 original size:40 final size:41
Alignment explanation
Indices: 20537080--20537231 Score: 191
Period size: 41 Copynumber: 3.7 Consensus size: 41
20537070 TTACCTTTCG
*
20537080 GGGCTTTAGCGGCG-TTTCTTGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTC-GGAAAAGCGCCGCTAATGCTCA
* *
20537121 TGGCTTTAGCGGCGTTTTCGGATAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTCGGAAAAGCGCCGCTAATGCTCA
* * * *
20537162 GGGTTTTAGCGGCGTTTTTGGGAAAGCGCTGCTAATGCTC-
1 GGGCTTTAGCGGCGTTTTCGGAAAAGCGCCGCTAATGCTCA
* **
20537202 GGGCTTTAGCGGCATTTTCAAAAAAGCGCC
1 GGGCTTTAGCGGCGTTTTCGGAAAAGCGCC
20537232 ACAAAAACAT
Statistics
Matches: 94, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 23 0.24
41 67 0.71
42 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.28
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTCGGAAAAGCGCCGCTAATGCTCA
Found at i:20537582 original size:14 final size:14
Alignment explanation
Indices: 20537565--20537601 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
20537555 GGGTTTAATA
*
20537565 TATATTGTTTAGGG
1 TATATGGTTTAGGG
20537579 TATATGGTTTAGGG
1 TATATGGTTTAGGG
20537593 TATATGGTT
1 TATATGGTT
20537602 AATTTAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.49
Consensus pattern (14 bp):
TATATGGTTTAGGG
Found at i:20537727 original size:22 final size:21
Alignment explanation
Indices: 20537702--20537746 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
20537692 GTGTTGTGAT
*
20537702 TTAAGGGTAAGGGAGTTAGAGA
1 TTAAGAGTAAGGGAGTTAG-GA
* *
20537724 TTAAGAGTTAGGGATTTAGGA
1 TTAAGAGTAAGGGAGTTAGGA
20537745 TT
1 TT
20537747 TATGGATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (21 bp):
TTAAGAGTAAGGGAGTTAGGA
Found at i:20537774 original size:26 final size:24
Alignment explanation
Indices: 20537739--20537786 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
20537729 AGTTAGGGAT
20537739 TTAGGATTTATGGATTTAGTATTAGG
1 TTAGGATTTA-GGATTTAG-ATTAGG
* *
20537765 TTAGGGTTTAGGGTTTAGATTA
1 TTAGGATTTAGGATTTAGATTA
20537787 ATTATTGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 7 0.35
26 9 0.45
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (24 bp):
TTAGGATTTAGGATTTAGATTAGG
Found at i:20537859 original size:5 final size:6
Alignment explanation
Indices: 20537843--20537877 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
20537833 TAGGGGTTCA
20537843 GGTTTG GGTTT- GGTTTG GGTTTG GGTTTAG GGTTT
1 GGTTTG GGTTTG GGTTTG GGTTTG GGTTT-G GGTTT
20537878 AGATTAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.03, C:0.00, G:0.46, T:0.51
Consensus pattern (6 bp):
GGTTTG
Found at i:20537859 original size:11 final size:12
Alignment explanation
Indices: 20537843--20537877 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
20537833 TAGGGGTTCA
20537843 GGTTTGGGTTT-
1 GGTTTGGGTTTG
20537854 GGTTTGGGTTTG
1 GGTTTGGGTTTG
20537866 GGTTTAGGGTTT
1 GGTTT-GGGTTT
20537878 AGATTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 5 0.23
13 6 0.27
ACGTcount: A:0.03, C:0.00, G:0.46, T:0.51
Consensus pattern (12 bp):
GGTTTGGGTTTG
Found at i:20537877 original size:7 final size:7
Alignment explanation
Indices: 20537816--20537879 Score: 52
Period size: 6 Copynumber: 10.0 Consensus size: 7
20537806 TATTAAATAA
20537816 GGTTTAG
1 GGTTTAG
*
20537823 GGGTTAG
1 GGTTTAG
20537830 GG-TTAGG
1 GGTTTA-G
*
20537837 GGTTCA-
1 GGTTTAG
20537843 GGTTT-G
1 GGTTTAG
20537849 GGTTT--
1 GGTTTAG
20537854 GGTTT-G
1 GGTTTAG
20537860 GGTTT-G
1 GGTTTAG
20537866 GGTTTAG
1 GGTTTAG
20537873 GGTTTAG
1 GGTTTAG
20537880 ATTAATTAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
5 5 0.10
6 23 0.47
7 19 0.39
8 2 0.04
ACGTcount: A:0.09, C:0.02, G:0.47, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:20537877 original size:13 final size:13
Alignment explanation
Indices: 20537816--20537877 Score: 51
Period size: 13 Copynumber: 4.9 Consensus size: 13
20537806 TATTAAATAA
*
20537816 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTTG
**
20537830 GG-TTAGGGGTTCA
1 GGTTTA-GGGTTTG
20537843 GGTTT-GGGTTT-
1 GGTTTAGGGTTTG
20537854 GGTTT-GGGTTTG
1 GGTTTAGGGTTTG
20537866 GGTTTAGGGTTT
1 GGTTTAGGGTTT
20537878 AGATTAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
11 11 0.26
12 10 0.24
13 17 0.40
14 4 0.10
ACGTcount: A:0.08, C:0.02, G:0.47, T:0.44
Consensus pattern (13 bp):
GGTTTAGGGTTTG
Found at i:20541938 original size:43 final size:43
Alignment explanation
Indices: 20541877--20542016 Score: 156
Period size: 43 Copynumber: 3.3 Consensus size: 43
20541867 GCGATATTTT
* *
20541877 TAGCGGGGTTTGTGAGAAAAGCGCCGCTAAAAGCCATGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCATGATCTA
* **
20541920 TAGCGGCGTTTGTGAGAAAATCGTTGCTAAAAGTCATGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * * * * *
20541963 TAGCGACGTTT-TAGGGGAAAGTGCCGTTAAAAGTCTTTATCTA
1 TAGCGGCGTTTGT-GAGAAAAGCGCCGCTAAAAGTCATGATCTA
20542006 TAGCGGCGTTT
1 TAGCGGCGTTT
20542017 TTTTAGAAGC
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 1 0.01
43 79 0.99
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCATGATCTA
Found at i:20542377 original size:21 final size:22
Alignment explanation
Indices: 20542331--20542378 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
20542321 AACATCTAAC
* * *
20542331 CCCTAACCTTTAAATCTTAAAT
1 CCCTAACCCTTAAACCATAAAT
20542353 -CCTAACCCTTAAACCAT-AAT
1 CCCTAACCCTTAAACCATAAAT
20542373 CCCTAA
1 CCCTAA
20542379 TCCATAATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.38, C:0.33, G:0.00, T:0.29
Consensus pattern (22 bp):
CCCTAACCCTTAAACCATAAAT
Found at i:20542395 original size:15 final size:14
Alignment explanation
Indices: 20542366--20542407 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
20542356 AACCCTTAAA
20542366 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
20542380 CCATAATCTCTGAAT
1 CCATAATCCCT-AAT
*
20542395 CCATATTCCCTAA
1 CCATAATCCCTAA
20542408 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.33, C:0.33, G:0.02, T:0.31
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:20542715 original size:15 final size:14
Alignment explanation
Indices: 20542673--20542721 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
20542663 TCCCAACCCT
*
20542673 TAAACCATAATACC
1 TAAACCATAATCCC
20542687 TAAACCATAATCCC
1 TAAACCATAATCCC
*
20542701 TAAATCCATACTCCC
1 TAAA-CCATAATCCC
20542716 TAAACC
1 TAAACC
20542722 TTAAAATAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 19 0.59
15 13 0.41
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:20543127 original size:41 final size:41
Alignment explanation
Indices: 20543067--20543507 Score: 445
Period size: 41 Copynumber: 10.8 Consensus size: 41
20543057 ATAAAAAATT
*
20543067 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAACA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
*** * *
20543108 TTAGCAATGCTTTTCCAAAAACACCGCTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* * * * *
20543149 TTAGCGGTGCTTTTCCAAAAACGCAGCTAAAGCCCTCAACA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* * * * *
20543190 TTAGAGGCGCTTTTTCAAAAACGCCACTAAAACCTCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* * *
20543231 TTAGCGGCGC-TTTTAAAAAACGCCGCTAAAACCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* *
20543271 TTAGCGGCACTTTTTCAAAAACGCCGCTAAAG-CCCTAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* * * * *
20543311 TTAGTGACGCTTTTTCAAAAACGCCGCTAAAACCTCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* ** * * *
20543352 TTAGCGGCGCTTTTTAAAAAACATCGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* ** * * * *
20543393 TTAGTGTTGCTTTTTCAAAAACGCAGCTAAAACCTCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* * * *
20543434 TTAGCGGTGCATTTTCAAAAACACCGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
* * **
20543475 TTGGCGGCGTTTTTTTGAAAACGCCGCTAAAGC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGC
20543508 TCCTAAAGGT
Statistics
Matches: 332, Mismatches: 66, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
40 71 0.21
41 261 0.79
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCCAGCA
Found at i:20547017 original size:114 final size:112
Alignment explanation
Indices: 20546613--20547171 Score: 482
Period size: 115 Copynumber: 4.9 Consensus size: 112
20546603 TATGTTACAG
* *
20546613 TTAGTGGCGTTTAAGGGAAAACGCCGCTATAGCATAATATTAGCGGCG-TTTTGTGAGAAGCGCC
1 TTAGTGGCG-TTAAGGG-AAACGCCGCTAAAGCATACTATTAGCGGCGCTTTT-TGAGAAGCGCC
* * *
20546677 GCAAAATAT-CTTAACCAAAACGCAAAGTTTGGTCTTGAGGTATACAAGAA
63 GCAAAATATGC-TAACCAAAACGCAGAGTTTTGTCTTGAGGTATACTAGAA
** **
20546727 TTAGTGGCGCAAAGGGAACACGCCGCT-AAGTCATACTATTAGCGGCGCTTTCGGAGAAGCGCCG
1 TTAGTGGCGTTAAGGGAA-ACGCCGCTAAAG-CATACTATTAGCGGCGCTTTTTGAGAAGCGCCG
* * * * * *
20546791 CAATATTTGGTAACCAAAACGCAGTGTTTTTTGTCTTGATGTATAC-AGTTA
64 CAAAATATGCTAACCAAAACGCAGAG--TTTTGTCTTGAGGTATACTAG-AA
** * * **** *
20546842 TTAGTGGCGTATATTA-AAAAACGCCGCTAAATCATAGTATTAGCGGCGCTTGGCAAAAAGCGCC
1 TTAGTGGCGT-TA--AGGGAAACGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAGCGCC
* * *
20546906 GCAAAATATGCTCACCAAAACGCAGAGTTTTTTCTTGAGGTATATTAGAA
63 GCAAAATATGCTAACCAAAACGCAGAGTTTTGTCTTGAGGTATACTAGAA
* * * *
20546956 TTAGTTGCGCTTACGGGAGAACGCCACTAAAGCATACTATTAGCGGCACTTTTTGAGAAGCGCCG
1 TTAGTGGCG-TTAAGGGA-AACGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAGCGCCG
** * * * *
20547021 CAAAATATATTAACAAAAACGCA-ACGTTTAAGTCTTGATGTATACTGGAA
64 CAAAATATGCTAACCAAAACGCAGA-GTTT-TGTCTTGAGGTATACTAGAA
* * * * * *
20547071 TTAATGGCGTCCACGAGAAATCGCCGCTAAAGCATAGTATTAGTGGCGCTTTTTGAGAAGCGCCG
1 TTAGTGGCGT-TAAGGGAAA-CGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAGCGCCG
* ** *
20547136 GAAAATATTTTAACCAAAACACAGAGTTTTGGTCTT
64 CAAAATATGCTAACCAAAACGCAGAGTTTT-GTCTT
20547172 AATTAACCAT
Statistics
Matches: 355, Mismatches: 69, Indels: 41
0.76 0.15 0.09
Matches are distributed among these distances:
112 4 0.01
113 61 0.17
114 103 0.29
115 124 0.35
116 58 0.16
117 4 0.01
118 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (112 bp):
TTAGTGGCGTTAAGGGAAACGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAGCGCCGCA
AAATATGCTAACCAAAACGCAGAGTTTTGTCTTGAGGTATACTAGAA
Found at i:20547058 original size:229 final size:229
Alignment explanation
Indices: 20546630--20547171 Score: 561
Period size: 229 Copynumber: 2.4 Consensus size: 229
20546620 CGTTTAAGGG
* * * * ** *
20546630 AAAACGCCGCTATAGCATAATATTAGCGGCGTTTTGTGAGAAGCGCCGCAAAATATCTTAACCAA
1 AAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGCAAAAAGCGCCGCAAAATATCTTAACCAA
*
20546695 AACGCAAAGTTTGGTCTTGAGGTATACAAGAATTAGTGGCGCAAAGGGAACACGCCGCTAAGTCA
66 AACGCAAAGTTTGGTCTTGAGGTATACAAGAATTAGTGGCGCAAAGGGAACACGCCACTAAGTCA
* * * * * ** **
20546760 TACTATTAGCGGCGCTTTCGGAGAAGCGCCGCAATATTTGGTAACCAAAACGCAGTGTTTTTTGT
131 TACTATTAGCGGCACTTTCGGAGAAGCGCCGCAAAATATAGTAACAAAAACGCAACGTTTTAAGT
** * * **
20546825 CTTGATGTATACAGTTATTAGTGGCGTATATTAA
196 CTTGATGTATACAGGAATTAATGGCGTACACGAA
* *
20546859 AAAACGCCGCTAAATCATAGTATTAGCGGCGCTTGGCAAAAAGCGCCGCAAAATATGC-TCACCA
1 AAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGCAAAAAGCGCCGCAAAATAT-CTTAACCA
* ** ** * * *
20546923 AAACGCAGAGTTTTTTCTTGAGGTATATTAGAATTAGTTGCGCTTACGGGAGA-ACGCCACTAAA
65 AAACGCAAAGTTTGGTCTTGAGGTATACAAGAATTAGTGGCGC-AAAGGGA-ACACGCCACT-AA
** *
20546987 G-CATACTATTAGCGGCACTTTTTGAGAAGCGCCGCAAAATATATTAACAAAAACGCAACG-TTT
127 GTCATACTATTAGCGGCACTTTCGGAGAAGCGCCGCAAAATATAGTAACAAAAACGCAACGTTTT
* * *
20547050 AAGTCTTGATGTATACTGGAATTAATGGCGTCCACGAG
192 AAGTCTTGATGTATACAGGAATTAATGGCGTACACGAA
* * **** * * *
20547088 AAATCGCCGCTAAAGCATAGTATTAGTGGCGCTTTTTGAGAAGCGCCGGAAAATATTTTAACCAA
1 AAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGCAAAAAGCGCCGCAAAATATCTTAACCAA
* *
20547153 AACACAGAGTTTTGGTCTT
66 AACGCAAAG-TTTGGTCTT
20547172 AATTAACCAT
Statistics
Matches: 254, Mismatches: 53, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
229 181 0.71
230 69 0.27
231 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (229 bp):
AAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGCAAAAAGCGCCGCAAAATATCTTAACCAA
AACGCAAAGTTTGGTCTTGAGGTATACAAGAATTAGTGGCGCAAAGGGAACACGCCACTAAGTCA
TACTATTAGCGGCACTTTCGGAGAAGCGCCGCAAAATATAGTAACAAAAACGCAACGTTTTAAGT
CTTGATGTATACAGGAATTAATGGCGTACACGAA
Found at i:20549355 original size:43 final size:43
Alignment explanation
Indices: 20549019--20549354 Score: 399
Period size: 43 Copynumber: 7.8 Consensus size: 43
20549009 AGAAAAAAAT
* * * *
20549019 GCCGCTAAAGATCATGTCCTTTAGCGGCGCTTTTTCTAAAAAC
1 GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTTCCACAAAC
** * *
20549062 GCCGCTAAAGGTCATGTCCTTTAGCGGCGCTTTTAT-C-CAAGC
1 GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTT-TCCACAAAC
* *
20549104 GCCGCTAAAGACCTTGTCCTTTAGGGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTTCCACAAAC
* * ** *
20549147 GCCGCGAAAGACCATGTTATTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTTCCACAAAC
* *
20549190 ACTGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTTCCACAAAC
1 GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTTCCACAAAC
* *
20549233 GCTGCTAAAGACCTTGACCTTTAGCGGCGC-TTTTCCTACAAAC
1 GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTTCC-ACAAAC
*
20549276 GCCGCTAAAGACCTTTGTCCTTTAGCGGCGCTTTTTTCACAAAC
1 GCCGCTAAAGACC-TTGTCCTTTAGCGGCGCTTTTTCCACAAAC
* * ** *
20549320 ACCGCTAAAGACCCTAACCTTTAGCGGCACTTTTT
1 GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTT
20549355 TAAAAAACGC
Statistics
Matches: 255, Mismatches: 32, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
42 40 0.16
43 175 0.69
44 35 0.14
45 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (43 bp):
GCCGCTAAAGACCTTGTCCTTTAGCGGCGCTTTTTCCACAAAC
Found at i:20549576 original size:19 final size:19
Alignment explanation
Indices: 20549548--20549604 Score: 96
Period size: 19 Copynumber: 3.0 Consensus size: 19
20549538 ACAAAAATGT
*
20549548 TAAAATTTAAAATGATAAA
1 TAAAAGTTAAAATGATAAA
*
20549567 TAAAAGTTAAAATGATAAT
1 TAAAAGTTAAAATGATAAA
20549586 TAAAAGTTAAAATGATAAA
1 TAAAAGTTAAAATGATAAA
20549605 AATATTTACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (19 bp):
TAAAAGTTAAAATGATAAA
Found at i:20549735 original size:21 final size:21
Alignment explanation
Indices: 20549707--20549755 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
20549697 TCTACGCTGG
*
20549707 TCTGCTTCCCTTGCTGCAGCC
1 TCTGCTTCCCTCGCTGCAGCC
* * *
20549728 TTTGCTTCTCTCGCTGCCGCC
1 TCTGCTTCCCTCGCTGCAGCC
20549749 TCTGCTT
1 TCTGCTT
20549756 TAAGCTGCAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.41, G:0.18, T:0.39
Consensus pattern (21 bp):
TCTGCTTCCCTCGCTGCAGCC
Found at i:20550223 original size:13 final size:14
Alignment explanation
Indices: 20550194--20550226 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
20550184 ACAGTAGATG
*
20550194 AAATAAACCATTAA
1 AAATAAACCACTAA
20550208 AAATAAA-CACTAA
1 AAATAAACCACTAA
20550221 AAATAA
1 AAATAA
20550227 TTAAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.18
Consensus pattern (14 bp):
AAATAAACCACTAA
Found at i:20555329 original size:9 final size:9
Alignment explanation
Indices: 20555312--20555603 Score: 233
Period size: 9 Copynumber: 34.0 Consensus size: 9
20555302 TATGTATTTA
*
20555312 GTAAATTAT
1 GTAAGTTAT
20555321 GTAAGTTAT
1 GTAAGTTAT
*
20555330 GTACGTGTA-
1 GTAAGT-TAT
20555339 -TAAGTTAT
1 GTAAGTTAT
20555347 GTAAGTTAT
1 GTAAGTTAT
*
20555356 GT-A-TTAA
1 GTAAGTTAT
*
20555363 GTAAGCTAT
1 GTAAGTTAT
*
20555372 GTAAGTTTT
1 GTAAGTTAT
20555381 GT-A-TTAT
1 GTAAGTTAT
*
20555388 GTAACTTAT
1 GTAAGTTAT
20555397 GTAAGTTAT
1 GTAAGTTAT
** *
20555406 CAAAGTAAT
1 GTAAGTTAT
*
20555415 GTATGTTAT
1 GTAAGTTAT
20555424 GTAAG-T-T
1 GTAAGTTAT
20555431 GTAAGTTAT
1 GTAAGTTAT
20555440 GT-A-TTAT
1 GTAAGTTAT
* *
20555447 GTAACTTGT
1 GTAAGTTAT
20555456 GTAAGTTAT
1 GTAAGTTAT
* *
20555465 -CAAATTAAT
1 GTAAGTT-AT
*
20555474 GTATGTTAT
1 GTAAGTTAT
20555483 GTAAG-T-T
1 GTAAGTTAT
20555490 GTAAGTTAT
1 GTAAGTTAT
*
20555499 -TATGTATTAT
1 GTAAG--TTAT
20555509 GTAAGTTAT
1 GTAAGTTAT
20555518 GTAAGTTAT
1 GTAAGTTAT
20555527 GTAAGTTAT
1 GTAAGTTAT
20555536 GT-A-TTAT
1 GTAAGTTAT
*
20555543 GTAGGTTAT
1 GTAAGTTAT
*
20555552 GTAAGTTGT
1 GTAAGTTAT
*
20555561 GTAAGATAT
1 GTAAGTTAT
*
20555570 TTAAGTTAT
1 GTAAGTTAT
*
20555579 GTAAGTTTT
1 GTAAGTTAT
20555588 GT-A-TTAT
1 GTAAGTTAT
20555595 GTAAGTTAT
1 GTAAGTTAT
20555604 NNNNNNNNNN
Statistics
Matches: 222, Mismatches: 39, Indels: 44
0.73 0.13 0.14
Matches are distributed among these distances:
7 41 0.18
8 24 0.11
9 145 0.65
10 9 0.04
11 3 0.01
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:20555329 original size:25 final size:25
Alignment explanation
Indices: 20555301--20555405 Score: 115
Period size: 25 Copynumber: 4.2 Consensus size: 25
20555291 GTTACATAAT
*
20555301 TTATGTATTTAGTAAATTATGTAAG
1 TTATGTATTTAGTAAGTTATGTAAG
*
20555326 TTATGTACGTGTA-TAAGTTATGTAAG
1 TTATGTA--TTTAGTAAGTTATGTAAG
* *
20555352 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTTAGTAAGTTATGTAAG
* *
20555377 TTTTGTA-TTATGTAACTTATGTAAG
1 TTATGTATTTA-GTAAGTTATGTAAG
20555402 TTAT
1 TTAT
20555406 CAAAGTAATG
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
24 4 0.06
25 40 0.61
26 19 0.29
27 3 0.05
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (25 bp):
TTATGTATTTAGTAAGTTATGTAAG
Found at i:20555401 original size:34 final size:34
Alignment explanation
Indices: 20555316--20555603 Score: 179
Period size: 34 Copynumber: 8.4 Consensus size: 34
20555306 TATTTAGTAA
*
20555316 ATTATGTAAGTTATGTACGTGTA--TAAGTTATGT
1 ATTATGTAAGTTATGTAAGT-TATGTAAGTTATGT
* * *
20555349 AAGTTATGT-A-TTAAGTAAGCTATGTAAGTTTTGT
1 -A-TTATGTAAGTTATGTAAGTTATGTAAGTTATGT
* ** *
20555383 ATTATGTAACTTATGTAAGTTATCAAAGTAATGT
1 ATTATGTAAGTTATGTAAGTTATGTAAGTTATGT
20555417 ATGTTATGTAAG-T-TGTAAGTTATGT-A-TTATGT
1 A--TTATGTAAGTTATGTAAGTTATGTAAGTTATGT
* * * *
20555449 AACTTGTGTAAGTTAT-CAAATTAATGTATGTTATGT
1 -A-TTATGTAAGTTATGTAAGTT-ATGTAAGTTATGT
* *
20555485 AAGT-TGTAAGTTAT-TATGTATTATGTAAGTTATGT
1 -ATTATGTAAGTTATGTAAG--TTATGTAAGTTATGT
*
20555520 AAGTTATGTAAGTTATGT-A-TTATGTAGGTTATGT
1 -A-TTATGTAAGTTATGTAAGTTATGTAAGTTATGT
* * * *
20555554 AAGTTGTGTAAGATATTTAAGTTATGTAAGTTTTGT
1 -A-TTATGTAAGTTATGTAAGTTATGTAAGTTATGT
20555590 ATTATGTAAGTTAT
1 ATTATGTAAGTTAT
20555604 NNNNNNNNNN
Statistics
Matches: 200, Mismatches: 34, Indels: 40
0.73 0.12 0.15
Matches are distributed among these distances:
32 21 0.10
33 16 0.08
34 96 0.48
35 24 0.12
36 32 0.16
37 10 0.05
38 1 0.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (34 bp):
ATTATGTAAGTTATGTAAGTTATGTAAGTTATGT
Found at i:20555417 original size:59 final size:58
Alignment explanation
Indices: 20555339--20555563 Score: 238
Period size: 59 Copynumber: 3.8 Consensus size: 58
20555329 TGTACGTGTA
** * *
20555339 TAAGTTATGTAAGTTATGTA-TTAAGTAAGCTATGTAAGTTTTGTATTATGTAACTTATG
1 TAAGTTATCAAAGTAATGTAGTTATGTAAG-T-TGTAAGTTTTGTATTATGTAACTTATG
* *
20555398 TAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATGTATTATGTAACTTGTG
1 TAAGTTATCAAAGTAATGTA-GTTATGTAAGTTGTAAGTTTTGTATTATGTAACTTATG
* *
20555457 TAAGTTATCAAATTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTATG
1 TAAGTTATCAAAGTAATGTA-GTTATGTAAGTTGTAAG-T-TT-TGTATTATGTAACTTATG
** * * *
20555519 TAAGTTATGTAAGTTATGTA-TTATGTAGGTTATGTAAGTTGTGTA
1 TAAGTTATCAAAGTAATGTAGTTATGTAAG-T-TGTAAGTTTTGTA
20555564 AGATATTTAA
Statistics
Matches: 143, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
59 83 0.58
60 11 0.08
61 11 0.08
62 38 0.27
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (58 bp):
TAAGTTATCAAAGTAATGTAGTTATGTAAGTTGTAAGTTTTGTATTATGTAACTTATG
Found at i:20555438 original size:16 final size:16
Alignment explanation
Indices: 20555414--20555560 Score: 69
Period size: 16 Copynumber: 9.2 Consensus size: 16
20555404 ATCAAAGTAA
*
20555414 TGTATGTTATGTAAGT
1 TGTAAGTTATGTAAGT
*
20555430 TGTAAGTTATGT-ATT
1 TGTAAGTTATGTAAGT
* *
20555445 ATGTAACTTGTGTAAGT
1 -TGTAAGTTATGTAAGT
*
20555462 TATCAA---AT-TAA--
1 TGT-AAGTTATGTAAGT
*
20555473 TGTATGTTATGTAAGT
1 TGTAAGTTATGTAAGT
*
20555489 TGTAAGTTAT-TATGTATT
1 TGTAAGTTATGTA---AGT
20555507 ATGTAAGTTATGTAAGTT
1 -TGTAAGTTATGTAAG-T
*
20555525 ATGTAAGTTATGT-ATT
1 -TGTAAGTTATGTAAGT
*
20555541 ATGTAGGTTATGTAAGT
1 -TGTAAGTTATGTAAGT
20555558 TGT
1 TGT
20555561 GTAAGATATT
Statistics
Matches: 100, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
10 1 0.01
11 2 0.02
13 5 0.05
14 4 0.04
15 4 0.04
16 48 0.48
17 8 0.08
18 16 0.16
19 10 0.10
20 2 0.02
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.48
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:20555503 original size:19 final size:19
Alignment explanation
Indices: 20555479--20555535 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
20555469 TTAATGTATG
20555479 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
20555498 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
*
20555517 TGTAAGT--TATGTAAGTTA
1 T-TATGTAGTATGTAAGTTA
20555535 T
1 T
20555536 GTATTATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 14 0.41
19 16 0.47
20 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:20555595 original size:43 final size:41
Alignment explanation
Indices: 20555496--20555603 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 41
20555486 AGTTGTAAGT
*
20555496 TATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTATG
1 TATTATGTATTATGTAAGTTATGTAAGATATGTAAGTTATG
* *
20555537 TATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATG
1 TATTATGTA--TTATGTAAGTTATGTAAGATATGTAAGTTATG
*
20555580 TAAGTTTTGTATTATGTAAGTTAT
1 T-A-TTATGTATTATGTAAGTTAT
20555604 NNNNNNNNNN
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
41 9 0.16
43 42 0.72
44 1 0.02
45 6 0.10
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (41 bp):
TATTATGTATTATGTAAGTTATGTAAGATATGTAAGTTATG
Found at i:20557977 original size:27 final size:27
Alignment explanation
Indices: 20557929--20557980 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
20557919 TCTTGCATTT
* *
20557929 AAATAATTAATTACCAATTTATTTAAC
1 AAATAAATAATTACCAACTTATTTAAC
**
20557956 AAATAAATAATTACTTACTTATTTA
1 AAATAAATAATTACCAACTTATTTA
20557981 TTTGTTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (27 bp):
AAATAAATAATTACCAACTTATTTAAC
Found at i:20558063 original size:10 final size:10
Alignment explanation
Indices: 20558048--20558076 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
20558038 TAATAACTAT
20558048 ATATATATCC
1 ATATATATCC
20558058 ATATATATCC
1 ATATATATCC
20558068 ATATATATC
1 ATATATATC
20558077 AAAAAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATCC
Found at i:20560224 original size:14 final size:14
Alignment explanation
Indices: 20560205--20560272 Score: 52
Period size: 15 Copynumber: 4.9 Consensus size: 14
20560195 ATGACCGTTG
20560205 AAACCCTAAATCTC
1 AAACCCTAAATCTC
*
20560219 AAACCCCTAAACCTC
1 AAA-CCCTAAATCTC
*
20560234 TAACCCCTAAAT-T-
1 -AAACCCTAAATCTC
* *
20560247 -AACCTTAAATCCC
1 AAACCCTAAATCTC
*
20560260 AAACCTTAAATCT
1 AAACCCTAAATCT
20560273 ATACCCCGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
11 8 0.19
14 15 0.36
15 17 0.40
16 2 0.05
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACCCTAAATCTC
Found at i:20560228 original size:15 final size:15
Alignment explanation
Indices: 20560208--20560245 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
20560198 ACCGTTGAAA
20560208 CCCTAAATCTCAAAC
1 CCCTAAATCTCAAAC
* *
20560223 CCCTAAACCTCTAAC
1 CCCTAAATCTCAAAC
20560238 CCCTAAAT
1 CCCTAAAT
20560246 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCTCAAAC
Found at i:20560843 original size:41 final size:41
Alignment explanation
Indices: 20560774--20561036 Score: 262
Period size: 41 Copynumber: 6.4 Consensus size: 41
20560764 GCGCTTCGGC
* *
20560774 AAAAACGCCGCTAAAGG-TAAATGCATTAGCGGCGCTTAGCT
1 AAAAACGCCGCTAAAGGCTAGA-GCATTAGCGGCGCTTAGAT
** * * * *
20560815 GTAAACGCCGCTAAAGGCTAGAGAATTAGTGGCACTCAGAT
1 AAAAACGCCGCTAAAGGCTAGAGCATTAGCGGCGCTTAGAT
* * * *
20560856 AAAAATGCCACTAAA-GATCCGAGCATTAGCGGCGCTTAGAT
1 AAAAACGCCGCTAAAGGCT-AGAGCATTAGCGGCGCTTAGAT
* * ** *
20560897 AAAAACGCCGCTAAAGGCCAGAGGATTAGCGAAGCTAAGAT
1 AAAAACGCCGCTAAAGGCTAGAGCATTAGCGGCGCTTAGAT
** * *
20560938 AAAAACGCCATTAAA-GATCCGAGCATTAGCGGCGCTTAGAT
1 AAAAACGCCGCTAAAGGCT-AGAGCATTAGCGGCGCTTAGAT
* * *
20560979 AAAAACGCCGCTAAAGGCCAGAGGATTAGCGGCGCTCAGAT
1 AAAAACGCCGCTAAAGGCTAGAGCATTAGCGGCGCTTAGAT
20561020 AAAAACGCCGCTAAAGG
1 AAAAACGCCGCTAAAGG
20561037 TTTAAAAAAT
Statistics
Matches: 174, Mismatches: 43, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
40 3 0.02
41 166 0.95
42 5 0.03
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGGCTAGAGCATTAGCGGCGCTTAGAT
Found at i:20560894 original size:82 final size:81
Alignment explanation
Indices: 20560796--20561035 Score: 345
Period size: 82 Copynumber: 2.9 Consensus size: 81
20560786 AAAGGTAAAT
* ** * *
20560796 GCATTAGCGGCGCTTAGCTGTAAACGCCGCTAAAGGCTAGAGAATTAGTGGCACTCAGATAAAAA
1 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGGATTAG-GGCACTCAGATAAAAA
*
20560861 TGCCACTAAAGATCCGA
65 CGCCACTAAAGATCCGA
* * *
20560878 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGGATTAGCGAAGCTAAGATAAAAA
1 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGGATTAGGGCA-CTCAGATAAAAA
*
20560943 CGCCATTAAAGATCCGA
65 CGCCACTAAAGATCCGA
*
20560960 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGGATTAGCGGCGCTCAGATAAAAA
1 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGGATTAG-GGCACTCAGATAAAAA
*
20561025 CGCCGCTAAAG
65 CGCCACTAAAG
20561036 GTTTAAAAAA
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
81 2 0.01
82 137 0.98
83 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (81 bp):
GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGGATTAGGGCACTCAGATAAAAAC
GCCACTAAAGATCCGA
Found at i:20561205 original size:40 final size:38
Alignment explanation
Indices: 20561074--20561208 Score: 117
Period size: 40 Copynumber: 3.4 Consensus size: 38
20561064 TGGTCTTAGG
* ** * * *
20561074 TTTTTAGTGGCGCTTTATATAAAACGCCGCTAATTCCTA
1 TTTTTAGCGGCGCTTT-GGTAAATCGCCGCTAATGCTTA
* *
20561113 TTTTTAGCGGCGCTTCTGGGAAATCGCCGCTGATGCTCTA
1 TTTTTAGCGGCGCTT-TGGTAAATCGCCGCTAATGCT-TA
**
20561153 CCTTTAGCGGCGCTTTGGCTAAATCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGCTTTGG-TAAATCGCCGCTAATGCTT-A
* *
20561193 TTTTTTGTGGCGCTTT
1 TTTTTAGCGGCGCTTT
20561209 TATTCCAAAC
Statistics
Matches: 76, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
39 31 0.41
40 45 0.59
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (38 bp):
TTTTTAGCGGCGCTTTGGTAAATCGCCGCTAATGCTTA
Found at i:20564199 original size:9 final size:9
Alignment explanation
Indices: 20564180--20564519 Score: 405
Period size: 9 Copynumber: 37.4 Consensus size: 9
20564170 CACAAATTAA
20564180 ATAACTTAC
1 ATAACTTAC
20564189 ATTAA-TTAC
1 A-TAACTTAC
20564198 ATAACTTAC
1 ATAACTTAC
* * *
20564207 AAAAATTAA
1 ATAACTTAC
20564216 ATAACTTAC
1 ATAACTTAC
20564225 ATAACTTAC
1 ATAACTTAC
20564234 ATAACTTAC
1 ATAACTTAC
* *
20564243 ATAAATTAA
1 ATAACTTAC
20564252 ATAACTTAC
1 ATAACTTAC
20564261 ATAACTTAC
1 ATAACTTAC
* *
20564270 ATAAATTAA
1 ATAACTTAC
20564279 ATAACTTAC
1 ATAACTTAC
20564288 ATAACTTAC
1 ATAACTTAC
* * *
20564297 AAAAATTAA
1 ATAACTTAC
20564306 ATAACTTAC
1 ATAACTTAC
20564315 ATAACTTAC
1 ATAACTTAC
*
20564324 ATAAATTA-
1 ATAACTTAC
20564332 AGTAACTTAC
1 A-TAACTTAC
20564342 ATAACGTCTTAC
1 ATAA---CTTAC
* * *
20564354 AAAAATTAA
1 ATAACTTAC
20564363 ATAACTTAC
1 ATAACTTAC
20564372 ATAACTTAC
1 ATAACTTAC
*
20564381 ATAAATTAC
1 ATAACTTAC
* *
20564390 ATAAATTAA
1 ATAACTTAC
20564399 ATAACTTAC
1 ATAACTTAC
20564408 ATAACTTAC
1 ATAACTTAC
* *
20564417 ATAAATTAA
1 ATAACTTAC
20564426 ATAACTTAC
1 ATAACTTAC
20564435 ATAACTTAC
1 ATAACTTAC
* *
20564444 ATAAATTAA
1 ATAACTTAC
20564453 ATAACTTAC
1 ATAACTTAC
20564462 ATAACTTAC
1 ATAACTTAC
*
20564471 ATAACTTAA
1 ATAACTTAC
*
20564480 ATAGCTTAC
1 ATAACTTAC
*
20564489 ATAACTTAA
1 ATAACTTAC
20564498 ATAACTTAC
1 ATAACTTAC
20564507 ATAACTTAC
1 ATAACTTAC
20564516 ATAA
1 ATAA
20564520 TACATAAAAA
Statistics
Matches: 278, Mismatches: 46, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
8 4 0.01
9 262 0.94
10 4 0.01
12 8 0.03
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:20570081 original size:21 final size:21
Alignment explanation
Indices: 20570032--20570082 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
20570022 CTACAACTTA
* *
20570032 AAGCAGACGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
* *
20570053 AAGCAGAGGCTGCAGCTAGAG
1 AAGCAGAGGCGGCAGCGAGAG
20570074 AAGCAGAGG
1 AAGCAGAGG
20570083 GTCAAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.43, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:20570562 original size:43 final size:43
Alignment explanation
Indices: 20570458--20570572 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
20570448 AAAAATAGTG
* * * *
20570458 GCGTTTTTATACAAAAGTGCCGCTAAAGACCATGTTCTGTAGCG
1 GCGTTTTTATAC-AAAGCGCCGCTAAAGACCATGCTCTCTAGCA
* * **
20570502 GCGTTTGTA-AAAGAAGCGCCGCTAAAGATTATGCTCTCTAGCA
1 GCGTTTTTATACA-AAGCGCCGCTAAAGACCATGCTCTCTAGCA
* *
20570545 GTGTTTTTATACAAAGCGCCGTTAAAGA
1 GCGTTTTTATACAAAGCGCCGCTAAAGA
20570573 ACATATTCTT
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
42 1 0.02
43 46 0.81
44 10 0.18
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (43 bp):
GCGTTTTTATACAAAGCGCCGCTAAAGACCATGCTCTCTAGCA
Found at i:20570614 original size:42 final size:42
Alignment explanation
Indices: 20570567--20570674 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
20570557 AAAGCGCCGT
* *
20570567 TAAAGAACATATTCTTTAGTGGCGCTTAAT-AAAAAATGCCAC
1 TAAAGAACATATTCTTTAGCGGCGCTT-ATGAAAAAACGCCAC
* * * *
20570609 TAAAGATCATGTTCTTTCGCGGCGCTTATGAAAAAACGCCGC
1 TAAAGAACATATTCTTTAGCGGCGCTTATGAAAAAACGCCAC
* *
20570651 TAAAAAACATGA-TCTTTAACGGCG
1 TAAAGAACAT-ATTCTTTAGCGGCG
20570675 TTTTTGGTTG
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.04
42 51 0.96
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (42 bp):
TAAAGAACATATTCTTTAGCGGCGCTTATGAAAAAACGCCAC
Found at i:20573354 original size:26 final size:26
Alignment explanation
Indices: 20573325--20573403 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
20573315 TAATCACTTA
20573325 AATATTAAATTAATATAATATTTATC
1 AATATTAAATTAATATAATATTTATC
* * *
20573351 AATATTAGATTAATTTTAATATTAAAT-
1 AATATTAAATTAA-TATAATATT-TATC
* * *
20573378 ATTATTAAAATAATAGAATATTTATC
1 AATATTAAATTAATATAATATTTATC
20573404 TTGTAGATAA
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 2 0.05
26 19 0.46
27 18 0.44
28 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (26 bp):
AATATTAAATTAATATAATATTTATC
Found at i:20575661 original size:17 final size:18
Alignment explanation
Indices: 20575634--20575668 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
20575624 TAGAAAAATA
20575634 ATAATAAATAGAATTTAG
1 ATAATAAATAGAATTTAG
20575652 ATAA-AAATAGAATTTAG
1 ATAATAAATAGAATTTAG
20575669 GAAAAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (18 bp):
ATAATAAATAGAATTTAG
Found at i:20575677 original size:18 final size:17
Alignment explanation
Indices: 20575639--20575677 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
20575629 AAATAATAAT
*
20575639 AAATAGAATTTAGATAA
1 AAATAGAATTTAGAAAA
20575656 AAATAGAATTTAGGAAAA
1 AAATAGAATTTA-GAAAA
20575674 AAAT
1 AAAT
20575678 CTAAGAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.26
Consensus pattern (17 bp):
AAATAGAATTTAGAAAA
Found at i:20577159 original size:15 final size:14
Alignment explanation
Indices: 20577139--20577168 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
20577129 ATAATTTAGC
20577139 AAAAAAAGAAAAGAA
1 AAAAAAAG-AAAGAA
20577154 AAAAAAAGAAAGAA
1 AAAAAAAGAAAGAA
20577168 A
1 A
20577169 TAGACAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAGAA
Found at i:20577668 original size:31 final size:30
Alignment explanation
Indices: 20577633--20577707 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 30
20577623 TAAATATATT
20577633 TAAAATTTATTAAAAAT-TAGAAAAAAAATGA
1 TAAAATTTA-TAAAAATATAG-AAAAAAATGA
* * *
20577664 TAAAATATATAGAAATATAGAAAAAAATTA
1 TAAAATTTATAAAAATATAGAAAAAAATGA
20577694 TAAAATTTTATAAA
1 TAAAA-TTTATAAA
20577708 GTCGTAAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 20 0.54
31 17 0.46
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (30 bp):
TAAAATTTATAAAAATATAGAAAAAAATGA
Found at i:20577979 original size:28 final size:28
Alignment explanation
Indices: 20577948--20578018 Score: 142
Period size: 28 Copynumber: 2.5 Consensus size: 28
20577938 GCATCTTATA
20577948 ATTTTTTATGATTTTATAACATTTTACC
1 ATTTTTTATGATTTTATAACATTTTACC
20577976 ATTTTTTATGATTTTATAACATTTTACC
1 ATTTTTTATGATTTTATAACATTTTACC
20578004 ATTTTTTATGATTTT
1 ATTTTTTATGATTTT
20578019 TACAATTTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.61
Consensus pattern (28 bp):
ATTTTTTATGATTTTATAACATTTTACC
Found at i:20578019 original size:19 final size:19
Alignment explanation
Indices: 20577997--20578039 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
20577987 TTTTATAACA
* * *
20577997 TTTTACCATTTTTTATGAT
1 TTTTACAATTTTGTATAAT
20578016 TTTTACAATTTTGTATAAT
1 TTTTACAATTTTGTATAAT
20578035 TTTTA
1 TTTTA
20578040 ATAAAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTACAATTTTGTATAAT
Found at i:20584519 original size:6 final size:6
Alignment explanation
Indices: 20584510--20584559 Score: 91
Period size: 6 Copynumber: 8.3 Consensus size: 6
20584500 TAAGAATAAC
*
20584510 AAACAT AAACAT AAACAT AAACAT AAACAT AAACGT AAACAT AAACAT
1 AAACAT AAACAT AAACAT AAACAT AAACAT AAACAT AAACAT AAACAT
20584558 AA
1 AA
20584560 TAATAATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.66, C:0.16, G:0.02, T:0.16
Consensus pattern (6 bp):
AAACAT
Found at i:20584564 original size:3 final size:3
Alignment explanation
Indices: 20584556--20584604 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
20584546 AAACATAAAC
*
20584556 ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
20584604 A
1 A
20584605 CAACAACAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:20584565 original size:12 final size:12
Alignment explanation
Indices: 20584514--20584601 Score: 62
Period size: 12 Copynumber: 7.3 Consensus size: 12
20584504 AATAACAAAC
20584514 ATAAACATAA-A
1 ATAAACATAATA
20584525 CATAAACATAA-A
1 -ATAAACATAATA
*
20584537 CATAAACGTAA-A
1 -ATAAACATAATA
20584549 CATAAACATAATA
1 -ATAAACATAATA
20584562 ATAATA-ATAATA
1 ATAA-ACATAATA
*
20584574 ATAGTA-ATAATA
1 ATA-AACATAATA
20584586 ATAATA-ATAATA
1 ATAA-ACATAATA
20584598 ATAA
1 ATAA
20584602 TAACAACAAC
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
12 66 0.97
13 2 0.03
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (12 bp):
ATAAACATAATA
Found at i:20592188 original size:16 final size:16
Alignment explanation
Indices: 20592163--20592200 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
20592153 AATAGAATGC
20592163 AAAAATT-AAATTAAA
1 AAAAATTAAAATTAAA
20592178 AAAATATTAAAATTAAA
1 AAAA-ATTAAAATTAAA
20592195 ATAAAA
1 A-AAAA
20592201 AATTGCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.20
16 3 0.15
17 10 0.50
18 3 0.15
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATTAAAATTAAA
Found at i:20594150 original size:18 final size:19
Alignment explanation
Indices: 20594127--20594167 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
20594117 TTTTATGTGT
*
20594127 TATAAATTATATAATAT-A
1 TATAAATAATATAATATAA
20594145 TATAAATAATATAATATAA
1 TATAAATAATATAATATAA
20594164 TATA
1 TATA
20594168 TTAATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TATAAATAATATAATATAA
Found at i:20594158 original size:5 final size:5
Alignment explanation
Indices: 20594135--20594167 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
20594125 GTTATAAATT
20594135 ATATA ATAT- ATATA A-ATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
20594168 TTAATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:20594172 original size:8 final size:10
Alignment explanation
Indices: 20594135--20594167 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
20594125 GTTATAAATT
20594135 ATATAATAT-
1 ATATAATATA
20594144 ATATAA-ATA
1 ATATAATATA
20594153 ATATAATATA
1 ATATAATATA
20594163 ATATA
1 ATATA
20594168 TTAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 12 0.55
10 8 0.36
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
ATATAATATA
Found at i:20594555 original size:2 final size:2
Alignment explanation
Indices: 20594503--20594538 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
20594493 CTGTTATAGA
20594503 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20594539 GTTTTGTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20594835 original size:15 final size:16
Alignment explanation
Indices: 20594805--20594837 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
20594795 ATAAATCTTA
20594805 TAAAATATGGAATAAAT
1 TAAAATAT-GAATAAAT
20594822 TAAAATAT-AATAAAT
1 TAAAATATGAATAAAT
20594837 T
1 T
20594838 GAGAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAATATGAATAAAT
Found at i:20595154 original size:25 final size:24
Alignment explanation
Indices: 20595092--20595159 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
20595082 TAAGTATATA
** *
20595092 ATAATTTAAAAATAATTAAA-ATT
1 ATAATTTTTAAATAATTAAATACT
*
20595115 A-AATTTTTTAA-AATTAAATTACT
1 ATAATTTTTAAATAATTAAA-TACT
20595138 ATAATTTTTAAATAATTTAAAT
1 ATAATTTTTAAATAA-TTAAAT
20595160 CAAATTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
21 7 0.20
22 7 0.20
23 4 0.11
24 9 0.26
25 3 0.09
26 5 0.14
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAATTTTTAAATAATTAAATACT
Found at i:20596221 original size:75 final size:75
Alignment explanation
Indices: 20596142--20596322 Score: 229
Period size: 75 Copynumber: 2.3 Consensus size: 75
20596132 ATATGTTTCT
* * * **
20596142 GTTTTTTTTTTAATATTTATTTTTTAGTAGATGCAAGTAAGGTATGATCCCATTGAGTTTATTTA
1 GTTTTTTTTTTAACATTTATTTTTTAGTAAATGCAAATAACATATGATCCCATTGAGTTTATTTA
20596207 TTTTTTGATA
66 TTTTTTGATA
* *
20596217 G-TTTTTTTTTAACATTTGTTTTTTTAGTAAATGCAAATAACATATGATCCTATTGAGTTTATTT
1 GTTTTTTTTTTAACATTT-ATTTTTTAGTAAATGCAAATAACATATGATCCCATTGAGTTTATTT
*
20596281 GTTTTTTGATA
65 ATTTTTTGATA
20596292 GTTTATGTTTCTTTAACATTATTATTTTTTA
1 GTTT-T-TTT-TTTAACA-T-TTATTTTTTA
20596323 TGTACTTAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
74 15 0.17
75 52 0.58
76 2 0.02
77 1 0.01
78 3 0.03
79 7 0.08
80 8 0.09
81 2 0.02
ACGTcount: A:0.25, C:0.06, G:0.12, T:0.56
Consensus pattern (75 bp):
GTTTTTTTTTTAACATTTATTTTTTAGTAAATGCAAATAACATATGATCCCATTGAGTTTATTTA
TTTTTTGATA
Found at i:20601951 original size:21 final size:22
Alignment explanation
Indices: 20601918--20601958 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
20601908 TTAAAAAAAC
*
20601918 ATACTAAA-TTTTTTTTTATAT
1 ATACTAAACTTTTGTTTTATAT
*
20601939 ATACTAACCTTTTGTTTTAT
1 ATACTAAACTTTTGTTTTAT
20601959 CTTCTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (22 bp):
ATACTAAACTTTTGTTTTATAT
Found at i:20607063 original size:46 final size:46
Alignment explanation
Indices: 20606995--20607231 Score: 325
Period size: 46 Copynumber: 5.1 Consensus size: 46
20606985 TACCCTATTT
* * *
20606995 TGGACAGCATTTATACATCAAATTGGACAACATTAATATGCTCAAAA
1 TGGACAACA-TTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
20607042 TGGACAACATTATACATCAAATTGGATAGCATCAATATGCTCAAAA
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
20607088 TGGACAGA-ATTATACATCAAATTGGACAGCTTTAATATGCTCAAAT
1 TGGACA-ACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* *
20607134 TGGA-AATCATTATACATCAAATTGGACAACATCAATATGCTTAAAA
1 TGGACAA-CATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
20607180 TGGACAACATTATCCATCAAATTGGACAGCATCAATATACTCAAAT
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
20607226 TGGACA
1 TGGACA
20607232 GCATCAATAT
Statistics
Matches: 168, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 155 0.92
47 11 0.07
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.27
Consensus pattern (46 bp):
TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:20614353 original size:23 final size:22
Alignment explanation
Indices: 20614301--20614353 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
20614291 TCCACGTCTT
*
20614301 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
20614323 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
20614346 TTTCTTTT
1 TTTCTTTT
20614354 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:20616973 original size:40 final size:40
Alignment explanation
Indices: 20616882--20617012 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
20616872 TGACTCGTAT
* * **
20616882 CACTAAGTGCCTTACATAGCCGAAGCTATCTCAGTCTCGCA
1 CACTAAGTGCCATAAATAGCCGAAGCTATCTCA-AATCGCA
* *
20616923 CACTAAGTGCCATATATAGCCGAAGCTATTTCAAATCGCA
1 CACTAAGTGCCATAAATAGCCGAAGCTATCTCAAATCGCA
**
20616963 CACTAAGTGCCATAAATAGCCGAAGCTATCTCAAATTTCA
1 CACTAAGTGCCATAAATAGCCGAAGCTATCTCAAATCGCA
*
20617003 TACTAAGTGC
1 CACTAAGTGC
20617013 TAAACATAGC
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 50 0.62
41 30 0.38
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (40 bp):
CACTAAGTGCCATAAATAGCCGAAGCTATCTCAAATCGCA
Found at i:20623422 original size:46 final size:46
Alignment explanation
Indices: 20623354--20623634 Score: 386
Period size: 46 Copynumber: 6.1 Consensus size: 46
20623344 TACCTTGTTT
*
20623354 TGGACATCATTTATACATCAAATTGGACAGCAAT-AATATGCTCAAAA
1 TGGACAACA-TTATACATCAAATTGGACAGC-ATCAATATGCTCAAAA
20623401 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * * * * * *
20623447 TGGAGAGCATTATACATCAAATTAGATAGCTTTAATATGCTCAAAT
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * * *
20623493 TGGACTGA-ATTATACATCAAATTAGACAACATCAATATGGTCAAAA
1 TGGAC-AACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* *
20623539 TGGACAGCATTATACATCGAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
20623585 TGGACAACATTATACATCAAATTGGGCAGCATCAATATGCTCAAAA
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
20623631 TGGA
1 TGGA
20623635 GAATTATAAC
Statistics
Matches: 205, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
45 2 0.01
46 195 0.95
47 8 0.04
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (46 bp):
TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:20624394 original size:41 final size:40
Alignment explanation
Indices: 20624330--20624465 Score: 166
Period size: 41 Copynumber: 3.4 Consensus size: 40
20624320 TTGCCATCGT
* * *
20624330 ATAGCCGAAGTTATTATAATCTCGCACACTAAGTGCCTTAC
1 ATAGCCGAAGCTATTAT-ATCTCGCACACTAAGTGCCATAA
*
20624371 ATAGCCGAAGCTATCT-TAGTCTCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTAT-TATA-TCTCGCACACTAAGTGCCATAA
** **
20624412 ATAGCCGAAGCTATTCCAAATCGCACACTAAGTGCCATAA
1 ATAGCCGAAGCTATTATATCTCGCACACTAAGTGCCATAA
20624452 ATAGCCGAAGCTAT
1 ATAGCCGAAGCTAT
20624466 CTTGAATTTC
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
40 35 0.41
41 49 0.58
42 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (40 bp):
ATAGCCGAAGCTATTATATCTCGCACACTAAGTGCCATAA
Found at i:20624447 original size:40 final size:42
Alignment explanation
Indices: 20624351--20624465 Score: 155
Period size: 40 Copynumber: 2.8 Consensus size: 42
20624341 TATTATAATC
* * * **
20624351 TCGCACACTAAGTGCCTTACATAGCCGAAGCTA-TCTTAGTC
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATTCTCAGAA
*
20624392 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTC-CA-AA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATTCTCAGAA
20624432 TCGCACACTAAGTGCCATAAATAGCCGAAGCTAT
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTAT
20624466 CTTGAATTTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
40 33 0.49
41 32 0.48
42 2 0.03
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
TCGCACACTAAGTGCCATAAATAGCCGAAGCTATTCTCAGAA
Found at i:20624482 original size:40 final size:39
Alignment explanation
Indices: 20624330--20624486 Score: 154
Period size: 41 Copynumber: 3.9 Consensus size: 39
20624320 TTGCCATCGT
* * *
20624330 ATAGCCGAAGTTAT-TATAATCTCGCACACTAAGTGCCTTAC
1 ATAGCCGAAGCTATCT-TAAT-T-GCACACTAAGTGCCATAA
* *
20624371 ATAGCCGAAGCTATCTTAGTCTCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATCTTAAT-T-GCACACTAAGTGCCATAA
** *
20624412 ATAGCCGAAGCTATTCCAAATCGCACACTAAGTGCCATAA
1 ATAGCCGAAGCTA-TCTTAATTGCACACTAAGTGCCATAA
* *
20624452 ATAGCCGAAGCTATCTTGAATTTCATACTAAGTGC
1 ATAGCCGAAGCTATCTT-AATTGCACACTAAGTGC
20624487 TAAACATAGC
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 44 0.44
41 48 0.48
42 5 0.05
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (39 bp):
ATAGCCGAAGCTATCTTAATTGCACACTAAGTGCCATAA
Found at i:20629706 original size:43 final size:45
Alignment explanation
Indices: 20629659--20629743 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
20629649 TTCTAACTAA
* *
20629659 AAATTATAATTA-TTTTAAATGTGTAATTATCAAAA-TTTTTATT
1 AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTTATT
20629702 AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTT
1 AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTT
20629744 TATATCAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 12 0.32
44 21 0.55
45 5 0.13
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (45 bp):
AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTTATT
Found at i:20629742 original size:24 final size:23
Alignment explanation
Indices: 20629660--20629742 Score: 64
Period size: 23 Copynumber: 3.7 Consensus size: 23
20629650 TCTAACTAAA
** *
20629660 AATTATAATTATTTTAAATGTGT
1 AATTATAAAAATTTTAAATGTAT
* *
20629683 AATTATCAAAATTTT-TAT-TA-
1 AATTATAAAAATTTTAAATGTAT
* *
20629703 AATTATAATTATTTTTAAATGTAT
1 AATTATAA-AAATTTTAAATGTAT
20629727 AATTATAAAAACTTTT
1 AATTATAAAAA-TTTT
20629743 TTATATCAAC
Statistics
Matches: 44, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
20 7 0.16
21 6 0.14
22 4 0.09
23 15 0.34
24 12 0.27
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
AATTATAAAAATTTTAAATGTAT
Found at i:20632135 original size:21 final size:22
Alignment explanation
Indices: 20632095--20632135 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
20632085 ATATTTTCTA
* *
20632095 AATTATTAAAATTTTTAATTAG
1 AATTATTAAAATATTAAATTAG
20632117 AATT-TTAAAATATTAAATT
1 AATTATTAAAATATTAAATT
20632136 TTATGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
AATTATTAAAATATTAAATTAG
Found at i:20635707 original size:40 final size:40
Alignment explanation
Indices: 20635602--20635747 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
20635592 GCTACTCGTT
*
20635602 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
20635642 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
20635682 CAAATGCCTTCGGGTCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCA
20635723 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
20635748 CATCATTCAA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 83 0.89
41 10 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:20643572 original size:40 final size:39
Alignment explanation
Indices: 20643535--20643626 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
20643525 GCTACTCGTT
*
20643535 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
20643575 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
20643614 CAAATGCCTTCGG
1 CAAATGCCTTCGG
20643627 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:20643606 original size:39 final size:40
Alignment explanation
Indices: 20643516--20643679 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
20643506 CGGAATTTAA
** *
20643516 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
20643556 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
20643595 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
20643635 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
20643675 CCGGA
1 CCGGA
20643680 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:20645681 original size:16 final size:16
Alignment explanation
Indices: 20645660--20645691 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
20645650 TAATTGATTG
*
20645660 ATTTTTAGTTTAATTA
1 ATTTTTAGGTTAATTA
20645676 ATTTTTAGGTTAATTA
1 ATTTTTAGGTTAATTA
20645692 GATTAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
ATTTTTAGGTTAATTA
Found at i:20649114 original size:23 final size:23
Alignment explanation
Indices: 20649086--20649129 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
20649076 CTTTCTTACT
*
20649086 GTAGTAATTTTCGGGGTATTATA
1 GTAGTAATTTTCGGGATATTATA
20649109 GTAGTAATTTTCGGGATATTA
1 GTAGTAATTTTCGGGATATTA
20649130 CACATCATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.25, T:0.43
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTATA
Found at i:20649640 original size:21 final size:21
Alignment explanation
Indices: 20649614--20649655 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
20649604 CGAGTAGAAA
20649614 TCTAGTAAACTAAAAAAAGCC
1 TCTAGTAAACTAAAAAAAGCC
20649635 TCTAGTAAACTAAAAAAAGCC
1 TCTAGTAAACTAAAAAAAGCC
20649656 CACGAACAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (21 bp):
TCTAGTAAACTAAAAAAAGCC
Found at i:20656312 original size:43 final size:44
Alignment explanation
Indices: 20656252--20656408 Score: 171
Period size: 43 Copynumber: 3.6 Consensus size: 44
20656242 TTCGTATAAT
* * *
20656252 ACCATAGCTGGGCTA-TGGCATCAATATATGAGATTTTGTGTAA-
1 ACCATATCTGGGATATTGGCATCGATATATG-GATTTTGTGTAAG
* **
20656295 ACTATATCTGGGATA-TGGCATCGATATATGTGATTGCGTGTAAG
1 ACCATATCTGGGATATTGGCATCGATATATG-GATTTTGTGTAAG
* *
20656339 ACCATGTCTGGGACATTGGCATCGATATAT-GA-TTTGTGTAAG
1 ACCATATCTGGGATATTGGCATCGATATATGGATTTTGTGTAAG
* *
20656381 ACCATAGCTGGGCTATTGGCATCGATAT
1 ACCATATCTGGGATATTGGCATCGATAT
20656409 GTGATAACAT
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
42 32 0.33
43 38 0.40
44 12 0.12
45 14 0.15
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (44 bp):
ACCATATCTGGGATATTGGCATCGATATATGGATTTTGTGTAAG
Found at i:20656392 original size:42 final size:41
Alignment explanation
Indices: 20656237--20656413 Score: 155
Period size: 42 Copynumber: 4.1 Consensus size: 41
20656227 ATGGCATTAC
* * *
20656237 ATGATTTCGTATAATACCATAGCTGGGC-TATGGCATCAATAT
1 ATGATTT-GTGTAAGACCATAGCTGGGCAT-TGGCATCGATAT
* *
20656279 ATGAGATTTTGTGTAA-ACTATATCTGGG-ATATGGCATCGATAT
1 AT--GA-TTTGTGTAAGACCATAGCTGGGCAT-TGGCATCGATAT
*
20656322 ATGTGATTGCGTGTAAGACCAT-GTCTGGGACATTGGCATCGATAT
1 A--TGATT-TGTGTAAGACCATAG-CTGGG-CATTGGCATCGATAT
20656367 ATGATTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATAT
1 ATGATTTGTGTAAGACCATAGCTGGGC-ATTGGCATCGATAT
*
20656409 GTGAT
1 ATGAT
20656414 AACATGTAAG
Statistics
Matches: 113, Mismatches: 9, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
41 1 0.01
42 39 0.35
43 38 0.34
44 16 0.14
45 17 0.15
46 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (41 bp):
ATGATTTGTGTAAGACCATAGCTGGGCATTGGCATCGATAT
Found at i:20656422 original size:85 final size:86
Alignment explanation
Indices: 20656267--20656425 Score: 198
Period size: 85 Copynumber: 1.8 Consensus size: 86
20656257 AGCTGGGCTA
* * **
20656267 TGGCATCAATATATGAGATTTTGTGTAAACTATATCTGGGATATGGCATCGATATATGTGATTGC
1 TGGCATCAATATAT-AGATTTTGTGTAAACCATAGCTGGGATATGGCATCGA-ATATGTGATAAC
*
20656332 GTGTAAGACCATGTCTGGGACAT
64 ATGTAAGACCATGTCTGGGACAT
* *
20656355 TGGCATCGATATAT-GA-TTTGTGTAAGACCATAGCTGGGCTATTGGCATCG-ATATGTGATAAC
1 TGGCATCAATATATAGATTTTGTGTAA-ACCATAGCTGGGATA-TGGCATCGAATATGTGATAAC
20656417 ATGTAAGAC
64 ATGTAAGAC
20656426 TATATCTAGG
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 27 0.44
86 14 0.23
87 8 0.13
88 13 0.21
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (86 bp):
TGGCATCAATATATAGATTTTGTGTAAACCATAGCTGGGATATGGCATCGAATATGTGATAACAT
GTAAGACCATGTCTGGGACAT
Found at i:20656443 original size:42 final size:42
Alignment explanation
Indices: 20656289--20656453 Score: 149
Period size: 42 Copynumber: 3.9 Consensus size: 42
20656279 ATGAGATTTT
* *
20656289 GTGTAA-ACTATATCTGGGATA-TGGCATCGATATATGTGATTGC
1 GTGTAAGACCATATCTGGGATATTGGCATCG--ATATGTGA-TAC
* * * **
20656332 GTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTT
1 GTGTAAGACCATATCTGGGATATTGGCATCGATATGTGATAC
* *
20656374 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGTGATAAC
1 GTGTAAGACCATATCTGGGATATTGGCATCGATATGTGAT-AC
* * * *
20656417 ATGTAAGACTATATCTAGGATA-TGGCATTG-TATGTGA
1 GTGTAAGACCATATCTGGGATATTGGCATCGATATGTGA
20656454 CATACGAGAC
Statistics
Matches: 100, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 7 0.07
42 43 0.43
43 30 0.30
44 12 0.12
45 8 0.08
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATTGGCATCGATATGTGATAC
Found at i:20659634 original size:11 final size:11
Alignment explanation
Indices: 20659618--20659717 Score: 51
Period size: 11 Copynumber: 9.9 Consensus size: 11
20659608 TAAAAAATTT
20659618 TATTTTAAAAA
1 TATTTTAAAAA
20659629 TATTTT--AAA
1 TATTTTAAAAA
20659638 -A--TTAAAAA
1 TATTTTAAAAA
** *
20659646 -AAATTAAAAG
1 TATTTTAAAAA
20659656 TATTTTAAAAA
1 TATTTTAAAAA
20659667 TATTTT--AAA
1 TATTTTAAAAA
20659676 -A--TTAAAAA
1 TATTTTAAAAA
* *
20659684 AATTTAAAAAAA
1 TATTT-TAAAAA
*
20659696 GTATTTTAAAAT
1 -TATTTTAAAAA
20659708 TATTTTAAAA
1 TATTTTAAAA
20659718 TTTAAAAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 24
0.68 0.08 0.24
Matches are distributed among these distances:
6 4 0.06
8 9 0.13
9 7 0.10
10 6 0.09
11 30 0.43
12 9 0.13
13 4 0.06
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:20659645 original size:38 final size:38
Alignment explanation
Indices: 20659603--20659735 Score: 160
Period size: 38 Copynumber: 3.3 Consensus size: 38
20659593 AAATTAAAAC
**
20659603 AAAAATAAAAAATTTTATTTTAAAAATATTTTAAAATTA
1 AAAAATAAAAAA-AGTATTTTAAAAATATTTTAAAATTA
*
20659642 AAAAA-AATTAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATAA-AAAAAGTATTTTAAAAATATTTTAAAATT-A
*
20659681 AAAAATTTAAAAAAAGTATTTTAAAATTATTTTAAAATTTAA
1 AAAAA--TAAAAAAAGTATTTTAAAAATATTTTAAAA-TT-A
20659723 AAAAATAAAAAAA
1 AAAAATAAAAAAA
20659736 TAAAAAAATT
Statistics
Matches: 83, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
38 25 0.30
39 14 0.17
40 8 0.10
41 25 0.30
42 11 0.13
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (38 bp):
AAAAATAAAAAAAGTATTTTAAAAATATTTTAAAATTA
Found at i:20659733 original size:9 final size:8
Alignment explanation
Indices: 20659720--20659744 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
20659710 TTTTAAAATT
20659720 TAAAAAAA
1 TAAAAAAA
20659728 TAAAAAAA
1 TAAAAAAA
20659736 TAAAAAAA
1 TAAAAAAA
20659744 T
1 T
20659745 TATTGTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:20660197 original size:43 final size:43
Alignment explanation
Indices: 20660149--20660235 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
20660139 TTCATATTTC
* *
20660149 TTTTCTCATCTCATAATCATTTCTCATCTTTTCCATTTCAATA
1 TTTTCTCATCTCATAATCATTTCTCACCTTTGCCATTTCAATA
*
20660192 TTTTCTCATCTCATATTCATTTCTCACCTTTGCCATTTCAATA
1 TTTTCTCATCTCATAATCATTTCTCACCTTTGCCATTTCAATA
20660235 T
1 T
20660236 CAGTCACATA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.22, C:0.26, G:0.01, T:0.51
Consensus pattern (43 bp):
TTTTCTCATCTCATAATCATTTCTCACCTTTGCCATTTCAATA
Found at i:20660923 original size:25 final size:24
Alignment explanation
Indices: 20660877--20660924 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
20660867 AATATTACTC
*
20660877 ATTTTAATTTCACATTAAATTTTA
1 ATTTTAATTTCACACTAAATTTTA
*
20660901 ATTTTAATTTTCACACTATATTTT
1 ATTTTAA-TTTCACACTAAATTTT
20660925 GCTTATTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (24 bp):
ATTTTAATTTCACACTAAATTTTA
Found at i:20661425 original size:24 final size:23
Alignment explanation
Indices: 20661393--20661447 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
20661383 TCATTTCATT
*
20661393 TTATATATTTTAGTATAA-ATATTA
1 TTATATA-TTTAATATAACATA-TA
*
20661417 TTATTTATTTAATATAACATATA
1 TTATATATTTAATATAACATATA
*
20661440 TTAAATAT
1 TTATATAT
20661448 ATATACATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
TTATATATTTAATATAACATATA
Found at i:20668181 original size:18 final size:20
Alignment explanation
Indices: 20668158--20668197 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
20668148 AAGGTGGCAA
20668158 TTTTTC-TAT-CACTTCAAT
1 TTTTTCTTATGCACTTCAAT
20668176 TTTTTCTTTATGCACTTCAAT
1 TTTTTC-TTATGCACTTCAAT
20668197 T
1 T
20668198 CCTCTCTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
20 3 0.16
21 10 0.53
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTTCTTATGCACTTCAAT
Found at i:20679992 original size:21 final size:21
Alignment explanation
Indices: 20679959--20679998 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
20679949 AAAGCAATAT
20679959 TAAAAATTCTAACTAAAATGCC
1 TAAAAATTCTAAC-AAAATGCC
*
20679981 TAAAAA-TGTAACAAAATG
1 TAAAAATTCTAACAAAATG
20679999 TACCTAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.55, C:0.12, G:0.07, T:0.25
Consensus pattern (21 bp):
TAAAAATTCTAACAAAATGCC
Found at i:20686258 original size:32 final size:32
Alignment explanation
Indices: 20686222--20686284 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
20686212 GAAAAGGCAT
20686222 AATATCATTTCTCAACTTGGCATTCATAGTAA
1 AATATCATTTCTCAACTTGGCATTCATAGTAA
20686254 AATATCATTTCTCAACTTGGCATTCATAGTA
1 AATATCATTTCTCAACTTGGCATTCATAGTA
20686285 GGTGGGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (32 bp):
AATATCATTTCTCAACTTGGCATTCATAGTAA
Found at i:20695437 original size:27 final size:27
Alignment explanation
Indices: 20695367--20695426 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
20695357 GGAATCTATT
*
20695367 AGAATATGTCACAAAGGCTTTCCATTC
1 AGAATATGCCACAAAGGCTTTCCATTC
*
20695394 AGAATATGCCACAAAGGTTTTCCATTC
1 AGAATATGCCACAAAGGCTTTCCATTC
20695421 AGAATA
1 AGAATA
20695427 CTCCATAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (27 bp):
AGAATATGCCACAAAGGCTTTCCATTC
Found at i:20706544 original size:9 final size:9
Alignment explanation
Indices: 20706527--20706563 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
20706517 TGAATTTTCA
20706527 AATTCGAAT
1 AATTCGAAT
*
20706536 AACTCGAAT
1 AATTCGAAT
*
20706545 AATTCAAAT
1 AATTCGAAT
20706554 AATTCGAAT
1 AATTCGAAT
20706563 A
1 A
20706564 TAAACTATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:20711094 original size:29 final size:30
Alignment explanation
Indices: 20711030--20711095 Score: 100
Period size: 29 Copynumber: 2.2 Consensus size: 30
20711020 TTTAAAAAAT
*
20711030 ATTTTTATACTTTTTAAATATTTTTTTATA
1 ATTTTTATACTTTTTAAAAATTTTTTTATA
20711060 ATTTTT-TA-TTTTTAAAAATTATTTTTATA
1 ATTTTTATACTTTTTAAAAATT-TTTTTATA
20711089 ATTTTTA
1 ATTTTTA
20711096 AAATTAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
28 11 0.33
29 16 0.48
30 6 0.18
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (30 bp):
ATTTTTATACTTTTTAAAAATTTTTTTATA
Found at i:20711102 original size:28 final size:28
Alignment explanation
Indices: 20711043--20711102 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
20711033 TTTATACTTT
* ***
20711043 TTAAATATTTTTTTATAATTTTTTATTT
1 TTAAAAATTTTTTTATAATTTTTTAAAA
20711071 TTAAAAATTATTTTTATAA-TTTTTAAAA
1 TTAAAAATT-TTTTTATAATTTTTTAAAA
20711099 TTAA
1 TTAA
20711103 TTAATTGCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
TTAAAAATTTTTTTATAATTTTTTAAAA
Found at i:20711229 original size:23 final size:21
Alignment explanation
Indices: 20711190--20711238 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 21
20711180 GTGATTTGAC
*
20711190 AAAAAATATAAATTTAAAAATTA
1 AAAAAATATAAAATT--AAATTA
20711213 AAAAAATGA-AAAATTAAATTA
1 AAAAAAT-ATAAAATTAAATTA
20711234 AAAAA
1 AAAAA
20711239 CTAAAATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 11 0.46
23 12 0.50
24 1 0.04
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAAAATATAAAATTAAATTA
Found at i:20711230 original size:29 final size:30
Alignment explanation
Indices: 20711191--20711254 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 30
20711181 TGATTTGACA
* *
20711191 AAAAATATAAATTTAAAAATTAAAAAAATG
1 AAAAATATAAATTAAAAAACTAAAAAAATG
**
20711221 AAAAAT-TAAATTAAAAAACTAAAATGATG
1 AAAAATATAAATTAAAAAACTAAAAAAATG
20711250 AAAAA
1 AAAAA
20711255 GTTGGAAGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 24 0.80
30 6 0.20
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (30 bp):
AAAAATATAAATTAAAAAACTAAAAAAATG
Found at i:20711805 original size:19 final size:20
Alignment explanation
Indices: 20711773--20711810 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
20711763 AAAAAACTTA
*
20711773 TAAAATTTATAAAATTATTT
1 TAAAATTTACAAAATTATTT
20711793 TAAAA-TTACAAAATTATT
1 TAAAATTTACAAAATTATT
20711811 AAAATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAAATTTACAAAATTATTT
Found at i:20711825 original size:28 final size:28
Alignment explanation
Indices: 20711764--20711826 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
20711754 AAATTACAAA
*
20711764 AAAAACTTATAAAATTTATAAAATTATTT
1 AAAAA-TTACAAAATTTATAAAATTATTT
*
20711793 TAAAATTACAAAA-TTATTAAAATTATTT
1 AAAAATTACAAAATTTA-TAAAATTATTT
20711821 AAAAAT
1 AAAAAT
20711827 ATAAAATAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 3 0.10
28 23 0.77
29 4 0.13
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (28 bp):
AAAAATTACAAAATTTATAAAATTATTT
Found at i:20712199 original size:18 final size:18
Alignment explanation
Indices: 20712158--20712202 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
20712148 TAAAATTGTT
20712158 ATATTTTTATTTTTTTTG
1 ATATTTTTATTTTTTTTG
*
20712176 AAATTTTATATTTTTTTT-
1 ATATTTT-TATTTTTTTTG
*
20712194 CTATTTTTA
1 ATATTTTTA
20712203 ATAATTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 2 0.09
18 11 0.48
19 10 0.43
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (18 bp):
ATATTTTTATTTTTTTTG
Found at i:20712771 original size:15 final size:16
Alignment explanation
Indices: 20712746--20712776 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
20712736 CTGCAGTTTC
20712746 AAAATATTAAAAATAT
1 AAAATATTAAAAATAT
20712762 AAAA-ATTAAAAATAT
1 AAAATATTAAAAATAT
20712777 CAATTGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATATTAAAAATAT
Found at i:20714227 original size:30 final size:30
Alignment explanation
Indices: 20714186--20714250 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
20714176 TGGCAAAAAA
20714186 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
* *
20714216 CTCTTAAATTTCTCCTTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
20714246 CTCTC
1 CTCTC
20714251 TTTAATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.29, G:0.03, T:0.40
Consensus pattern (30 bp):
CTCTCAAATTTCTCCCTAAATTTCTCAAAG
Found at i:20717355 original size:41 final size:41
Alignment explanation
Indices: 20717306--20717496 Score: 328
Period size: 41 Copynumber: 4.6 Consensus size: 41
20717296 GACTTTAAGT
20717306 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
20717347 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
20717388 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
* **
20717429 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAGT
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
20717470 CTAGCAGGCTATGTGCCGTTGAATCTG
1 CTAGCAGGCTACGTGCCGGTG-ATCTG
20717497 TTTTAATTAA
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 139 0.97
42 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:20729270 original size:2 final size:2
Alignment explanation
Indices: 20729263--20729317 Score: 51
Period size: 2 Copynumber: 28.0 Consensus size: 2
20729253 AATAAGCATG
* * * *
20729263 TA TA TA TA TG TA TA TA TA TA -A TGC TA GA -A TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
20729304 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
20729318 AAAGTTATTG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
1 2 0.05
2 40 0.93
3 1 0.02
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (2 bp):
TA
Found at i:20730033 original size:41 final size:41
Alignment explanation
Indices: 20729984--20730092 Score: 164
Period size: 41 Copynumber: 2.6 Consensus size: 41
20729974 GACTTTAAGT
*
20729984 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
**
20730025 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAGT
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
* *
20730066 CTAGCAGGCTATGTGCCGTTGAATCTG
1 CTAGCAGGCTACGTGCCGGTG-ATCTG
20730093 TTTTAATTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
41 57 0.92
42 5 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:20730965 original size:18 final size:18
Alignment explanation
Indices: 20730942--20730976 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20730932 GCCAGGTGCA
*
20730942 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
20730960 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
20730977 ATTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:20730983 original size:18 final size:18
Alignment explanation
Indices: 20730941--20730983 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
20730931 TGCCAGGTGC
*
20730941 ATATCCTAGCCCTTATAT
1 ATATCCTAACCCTTATAT
*
20730959 GTATCCTAACCCTTATAT
1 ATATCCTAACCCTTATAT
*
20730977 ATTTCCT
1 ATATCCT
20730984 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.05, T:0.42
Consensus pattern (18 bp):
ATATCCTAACCCTTATAT
Found at i:20731409 original size:24 final size:23
Alignment explanation
Indices: 20731382--20731438 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 23
20731372 TATTTAATAA
20731382 AATAAAAGTTATTTTTA-ATGTTTT
1 AATAAAA-TTATTTTTATAT-TTTT
20731406 AATAGTAAATTATTTTTATATTTTT
1 AATA--AAATTATTTTTATATTTTT
20731431 AATAAAAT
1 AATAAAAT
20731439 AGAATTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
23 4 0.13
24 4 0.13
25 17 0.57
26 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (23 bp):
AATAAAATTATTTTTATATTTTT
Found at i:20734566 original size:125 final size:126
Alignment explanation
Indices: 20734335--20735475 Score: 1534
Period size: 125 Copynumber: 9.1 Consensus size: 126
20734325 GCCAAACATA
* * *
20734335 AACTACTATAGAAAAATAGCGTCGACGTGGGAGCTTTTTTCA-TCAATTTTGCTGACAGTGCATC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAGTGCATC
* * ***
20734399 CTGCTTGAAGTGTTTTTTACACTATTTGTTCAGAATTTTCTTCTCAAAATTA-TTTTTCAGG
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* *
20734460 AACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTCTCAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * *
20734525 TGCTTAAAGCGTTTTTGACACTATTTGTTCAGTACCGTCTTCTCAAAATTATTTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * * *
20734586 AACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAATGATTTTGCTGATAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* ** * * *
20734651 TGCTTGAGGTATTTTTGACACTATTTATTCA-AAACCGTCTTCTCAAAATTACTTTTTCATG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAA-CGTCTTCTCAAAATTATTTTTTCAGG
* *
20734712 AACTACTGTAGAAAAA-AACGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCT-ACTAGTGCATC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGAC-AGTGCATC
* * ** *
20734775 CTGTTTGAAGCATTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTA-TTTTTCAAG
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * * *
20734836 AACTACTGTAGAAAAAGAGCATCCAGGTGGGAGCTTTTTTCAGTAATTTTACTGACATTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * *
20734901 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACTTCTTCTTAAAATTATTTTTT-ACG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * *
20734961 AACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* *
20735026 TGCTTGAAGCGTTTTTGACACTATTTGATT-AGAATCGTCTTCTCAAAATTATTTTTTCAAG
66 TGCTTGAAGCGTTTTTGACACTATTTG-TTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * * * * *
20735087 AACTACTATAGAAAAAGAGTGTCCACGTAGGAGCTTTTTTTAGTCATTTTGCTGACAATGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
** * * * *
20735152 TATTTTAAGCGTTTTTGACACTATTTGTTCATAAACATATTCTCAAAATTATTTTTT-AGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * * **
20735212 AACTACTGTAGAAAAAGAGCGTCCACCTGGGAG-TTTTTTTAGTAATGTTGCTGACAGTGCATTT
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* *
20735276 TGCTTGAAGCGTTTTTTACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* *
20735337 AACTACTGTAGAAATA-AGCGTCCACGTGGGAGC-TTTTTCAGTCATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * *
20735400 TGCTTGAAGTGTTTTT-ACACTAATTGTTTAGAACCGTATTCTCAAAATTATTTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
*
20735460 AACTACTGTAAAAAAA
1 AACTACTGTAGAAAAA
20735476 AACAAAATCC
Statistics
Matches: 898, Mismatches: 105, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
123 53 0.06
124 156 0.17
125 436 0.49
126 253 0.28
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
Found at i:20734793 original size:251 final size:250
Alignment explanation
Indices: 20734335--20735475 Score: 1501
Period size: 251 Copynumber: 4.6 Consensus size: 250
20734325 GCCAAACATA
* * *
20734335 AACTACTATAGAAAAATAGCGTCGACGTGGGAGCTTTTTTCA-TCAATTTTGCTGACAGTGCATC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAGTGCATC
* ***
20734399 CTGCTTGAAGTGTTTTTTACACTATTTGTTCAGAATTTTCTTCTCAAAATTATTTTTCAGGAACT
65 CTGCTTGAAGTGTTTTTGACACTATTTGTTCA-AAACGTCTTCTCAAAATTATTTTTCAGGAACT
*
20734464 ACTGTAGAAAAAGAGCGTCCACGT-GAGAGCTTTTCTCAGTAATTTTGCTGACAGTGCATCCTGC
129 ACTGTAGAAAAAGAGCGTCCACGTGGA-AGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
* * * *
20734528 TTAAAGCGTTTTTGACACTATTTGTTCAGTACCGTCTTCTCAAAATTATTTTTTCAGG
193 TTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAG
* * * *
20734586 AACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAATGATTTTGCTGATAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * *
20734651 TGCTTGAGGTATTTTTGACACTATTTATTCAAAACCGTCTTCTCAAAATTACTTTTTCATGAACT
66 TGCTTGAAGTGTTTTTGACACTATTTGTTCAAAA-CGTCTTCTCAAAATTA-TTTTTCAGGAACT
* *
20734716 ACTGTAGAAAAA-AACGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCT-ACTAGTGCATCCTGT
129 ACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGAC-AGTGCATCCTGC
* **
20734779 TTGAAGCATTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTA-TTTTTCAAG
193 TTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAG
* * * *
20734836 AACTACTGTAGAAAAAGAGCATCCAGGTGGGAGCTTTTTTCAGTAATTTTACTGACATTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * *
20734901 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACTTCTTCTTAAAATTATTTTTTACGAACTA
66 TGCTTGAAGTGTTTTTGACACTATTTGTTCA-AAACGTCTTCTCAAAATTATTTTTCAGGAACTA
* * * *
20734966 CTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATCCTGCTT
130 CTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTT
*
20735031 GAAGCGTTTTTGACACTATTTGATT-AGAATCGTCTTCTCAAAATTATTTTTTCAAG
195 GAAGCGTTTTTGACACTATTTG-TTCAGAAACGTCTTCTCAAAATTATTTTTTCAAG
* * * * * *
20735087 AACTACTATAGAAAAAGAGTGTCCACGTAGGAGCTTTTTTTAGTCATTTTGCTGACAATGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
** * * * * *
20735152 TATTTTAAGCGTTTTTGACACTATTTGTTCATAAACATATTCTCAAAATTATTTTTTAGGAACTA
66 TGCTTGAAGTGTTTTTGACACTATTTGTTCA-AAACGTCTTCTCAAAATTATTTTTCAGGAACTA
* * * * **
20735217 CTGTAGAAAAAGAGCGTCCACCTGGGAG-TTTTTTTAGTAATGTTGCTGACAGTGCATTTTGCTT
130 CTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTT
* * *
20735281 GAAGCGTTTTTTACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGG
195 GAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAG
* *
20735337 AACTACTGTAGAAATA-AGCGTCCACGTGGGAGC-TTTTTCAGTCATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * *
20735400 TGCTTGAAGTGTTTTT-ACACTAATTGTTTAGAACCGTATTCTCAAAATTATTTTTTCAGGAACT
66 TGCTTGAAGTGTTTTTGACACTATTTGTTCA-AAACGTCTTCTCAAAATTA-TTTTTCAGGAACT
*
20735464 ACTGTAAAAAAA
129 ACTGTAGAAAAA
20735476 AACAAAATCC
Statistics
Matches: 782, Mismatches: 96, Indels: 27
0.86 0.11 0.03
Matches are distributed among these distances:
247 29 0.04
248 63 0.08
249 39 0.05
250 288 0.37
251 336 0.43
252 27 0.03
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (250 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGTGTTTTTGACACTATTTGTTCAAAACGTCTTCTCAAAATTATTTTTCAGGAACTAC
TGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTG
AAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAG
Done.