Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 70 of 185
Found at i:22208370 original size:75 final size:75
Alignment explanation
Indices: 22208243--22208389 Score: 186
Period size: 75 Copynumber: 2.0 Consensus size: 75
22208233 TTAGAAATTA
* * ** ** * *
22208243 ATATTCTTTTGGAAAAAATATAATTCCTTTTTCAAACTTTTGATTTGTCTTCTCTATTAATAAGA
1 ATATTCTTTTAGAAAAAATATAAATAATTTTTCAAACTTTCCATTTGACTTCTATATTAATAAGA
22208308 GAATAATTCT
66 GAATAATTCT
* ** *
22208318 ATATTCTTTTAGAAAGAATATAAATAATTTTTTTAACTTTCCATTTGACTTCTATATTAATAAGG
1 ATATTCTTTTAGAAAAAATATAAATAATTTTTCAAACTTTCCATTTGACTTCTATATTAATAAGA
22208383 GAATAAT
66 GAATAAT
22208390 CTTTTAGAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
75 60 1.00
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTAGAAAAAATATAAATAATTTTTCAAACTTTCCATTTGACTTCTATATTAATAAGA
GAATAATTCT
Found at i:22208794 original size:18 final size:17
Alignment explanation
Indices: 22208771--22208808 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
22208761 TTAAGATTTT
22208771 TATAATAATA-AAATATAA
1 TATAATAA-AGAAATA-AA
22208789 TATAATAAAGAAATAAA
1 TATAATAAAGAAATAAA
22208806 TAT
1 TAT
22208809 CAAGAGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TATAATAAAGAAATAAA
Found at i:22215511 original size:21 final size:18
Alignment explanation
Indices: 22215485--22215528 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
22215475 TTGAAATATA
22215485 TAATTATCTTTACAATAAAAT
1 TAATTAT-TTTA-AAT-AAAT
*
22215506 TAATTATTTTAGATAAAT
1 TAATTATTTTAAATAAAT
22215524 TAATT
1 TAATT
22215529 TTAATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 2 0.09
20 4 0.18
21 7 0.32
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (18 bp):
TAATTATTTTAAATAAAT
Found at i:22216879 original size:16 final size:16
Alignment explanation
Indices: 22216860--22216890 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22216850 ATTTTAGGGT
22216860 TGTGAAATTGAGACTG
1 TGTGAAATTGAGACTG
22216876 TGTGAAATTGAGACT
1 TGTGAAATTGAGACT
22216891 CTGTAAGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.32
Consensus pattern (16 bp):
TGTGAAATTGAGACTG
Found at i:22222356 original size:27 final size:27
Alignment explanation
Indices: 22222326--22222503 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22222316 ATATTGAGTC
* * * *
22222326 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22222353 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22222380 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22222408 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22222435 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22222462 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22222489 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22222504 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22222465 original size:82 final size:81
Alignment explanation
Indices: 22222347--22222502 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22222337 TGCTATATAA
* *
22222347 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22222412 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22222429 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22222493 CACTTAGTGC
65 CACTTAGTGC
22222503 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22230546 original size:27 final size:27
Alignment explanation
Indices: 22230516--22230747 Score: 304
Period size: 27 Copynumber: 8.6 Consensus size: 27
22230506 ATATTGAGTC
* * *
22230516 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
22230543 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
22230570 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
22230597 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
22230624 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
22230652 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
22230679 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
22230706 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
22230733 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22230748 GTACAATTTA
Statistics
Matches: 183, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
27 158 0.86
28 25 0.14
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:22230682 original size:109 final size:108
Alignment explanation
Indices: 22230516--22230747 Score: 313
Period size: 109 Copynumber: 2.1 Consensus size: 108
22230506 ATATTGAGTC
* * * *
22230516 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAG
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAG
* *
22230581 TGC-TACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
66 TGCAT-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
* * ** *
22230624 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTA
* **
22230689 GTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
65 GTGCATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
22230733 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22230748 GTACAATTTA
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
108 20 0.19
109 87 0.81
110 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (108 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAG
TGCATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:22234726 original size:30 final size:29
Alignment explanation
Indices: 22234691--22234770 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 29
22234681 ATTTTTAAAA
*
22234691 TATTTTTAAAATACTTGTTTTAAA-TTTTTT
1 TATTTTTAAAATA-TT-TTTAAAACTTTTTT
22234721 TATTTTTAAAATATTTTTAAAATCCTTTTTT
1 TATTTTTAAAATATTTTTAAAA--CTTTTTT
*
22234752 TATTTTTTAAAATTTTTTT
1 TA-TTTTTAAAATATTTTT
22234771 TGGTGTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
28 6 0.14
29 2 0.05
30 13 0.30
31 8 0.18
32 15 0.34
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (29 bp):
TATTTTTAAAATATTTTTAAAACTTTTTT
Found at i:22234750 original size:12 final size:11
Alignment explanation
Indices: 22234669--22234743 Score: 88
Period size: 11 Copynumber: 7.1 Consensus size: 11
22234659 TTTTATTTTT
22234669 TATTTTTAAAA
1 TATTTTTAAAA
22234680 TATTTTTAAAA
1 TATTTTTAAAA
22234691 TATTTTTAAAA
1 TATTTTTAAAA
*
22234702 TACTTGTTTTAAA
1 TA-TT-TTTAAAA
22234715 T-TTTTT----
1 TATTTTTAAAA
22234721 TATTTTTAAAA
1 TATTTTTAAAA
22234732 TATTTTTAAAA
1 TATTTTTAAAA
22234743 T
1 T
22234744 CCTTTTTTTA
Statistics
Matches: 56, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
6 1 0.02
7 5 0.09
10 3 0.05
11 38 0.68
12 2 0.04
13 7 0.12
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:22234767 original size:41 final size:41
Alignment explanation
Indices: 22234664--22234768 Score: 133
Period size: 41 Copynumber: 2.5 Consensus size: 41
22234654 TTATTTTTTA
*
22234664 TTTTTTATTTTTAAAATATTTTTAAAATATTTTTAAAATACT
1 TTTTTTATTTTTTAAA-ATTTTTAAAATATTTTTAAAATACT
* * *
22234706 TGTTTTAAATTTTTT--TATTTTTAAAATATTTTTAAAATCCT
1 T-TTTT-TATTTTTTAAAATTTTTAAAATATTTTTAAAATACT
22234747 TTTTTTATTTTTTAAAATTTTT
1 TTTTTTATTTTTTAAAATTTTT
22234769 TTTGGTGTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
39 7 0.13
40 4 0.08
41 31 0.58
42 1 0.02
43 4 0.08
44 6 0.11
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (41 bp):
TTTTTTATTTTTTAAAATTTTTAAAATATTTTTAAAATACT
Found at i:22234768 original size:11 final size:11
Alignment explanation
Indices: 22234671--22234770 Score: 56
Period size: 11 Copynumber: 9.5 Consensus size: 11
22234661 TTATTTTTTA
*
22234671 TTTTTAAAATA
1 TTTTTAAAATT
*
22234682 TTTTTAAAATA
1 TTTTTAAAATT
22234693 TTTTTAAAATACT
1 TTTTTAAAAT--T
22234706 TGTTTT-AAATT
1 T-TTTTAAAATT
22234717 TTTTT---A--
1 TTTTTAAAATT
*
22234723 TTTTTAAAATA
1 TTTTTAAAATT
22234734 TTTTTAAAATCCT
1 TTTTTAAAAT--T
*
22234747 TTTTT--TA-T
1 TTTTTAAAATT
22234755 TTTTTAAAATT
1 TTTTTAAAATT
22234766 TTTTT
1 TTTTT
22234771 TGGTGTTTAT
Statistics
Matches: 72, Mismatches: 4, Indels: 26
0.71 0.04 0.25
Matches are distributed among these distances:
6 5 0.07
8 7 0.10
9 1 0.01
10 5 0.07
11 40 0.56
13 10 0.14
14 4 0.06
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (11 bp):
TTTTTAAAATT
Found at i:22235520 original size:11 final size:11
Alignment explanation
Indices: 22235484--22235545 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
22235474 ACCACCACTT
*
22235484 CACCACCATAG
1 CACCACCCTAG
* *
22235495 CACCACTAC-AC
1 CACCAC-CCTAG
22235506 CACCACCCTAG
1 CACCACCCTAG
* *
22235517 CACCACCGTAT
1 CACCACCCTAG
*
22235528 CACCACCCTTG
1 CACCACCCTAG
22235539 CACCACC
1 CACCACC
22235546 TTAAAAAAAG
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
10 1 0.03
11 38 0.97
ACGTcount: A:0.29, C:0.53, G:0.06, T:0.11
Consensus pattern (11 bp):
CACCACCCTAG
Found at i:22235531 original size:22 final size:22
Alignment explanation
Indices: 22235473--22235545 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
22235463 TTTCCTTGAT
* *
22235473 CACCACCACTTCACCACCATAG
1 CACCACCACATCACCACCCTAG
* *
22235495 CACCACTACACCACCACCCTAG
1 CACCACCACATCACCACCCTAG
** *
22235517 CACCACCGTATCACCACCCTTG
1 CACCACCACATCACCACCCTAG
22235539 CACCACC
1 CACCACC
22235546 TTAAAAAAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.29, C:0.53, G:0.05, T:0.12
Consensus pattern (22 bp):
CACCACCACATCACCACCCTAG
Found at i:22238154 original size:25 final size:24
Alignment explanation
Indices: 22238126--22238173 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
22238116 ATCCGGGCAA
22238126 TATAAC-GAGAAGCTCACAAAGAGCC
1 TATAACAG-GAAGCTC-CAAAGAGCC
*
22238151 TATAACAGGTAGCTCCAAAGAGC
1 TATAACAGGAAGCTCCAAAGAGC
22238174 AATTAACGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (24 bp):
TATAACAGGAAGCTCCAAAGAGCC
Found at i:22238180 original size:24 final size:24
Alignment explanation
Indices: 22238136--22238204 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
22238126 TATAACGAGA
*
22238136 AGCTCACAAAGAGC-CTATAACAGGT
1 AGCTC-CAAAGAGCAAT-TAACAGGT
*
22238161 AGCTCCAAAGAGCAATTAACGGGT
1 AGCTCCAAAGAGCAATTAACAGGT
**
22238185 AGCTCTGAAGAGCAATTAAC
1 AGCTCCAAAGAGCAATTAAC
22238205 GGGAAGCACT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 33 0.85
25 6 0.15
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (24 bp):
AGCTCCAAAGAGCAATTAACAGGT
Found at i:22238205 original size:24 final size:24
Alignment explanation
Indices: 22238153--22238230 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
22238143 AAAGAGCCTA
* **
22238153 TAACAGGTAGCTCCAAAGAGCAAT
1 TAACGGGTAGCTCTGAAGAGCAAT
22238177 TAACGGGTAGCTCTGAAGAGCAAT
1 TAACGGGTAGCTCTGAAGAGCAAT
* * * *
22238201 TAACGGGAAGCACTGGATAGCAAT
1 TAACGGGTAGCTCTGAAGAGCAAT
22238225 ATAACG
1 -TAACG
22238231 AGAAGTTCAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 41 0.89
25 5 0.11
ACGTcount: A:0.38, C:0.18, G:0.26, T:0.18
Consensus pattern (24 bp):
TAACGGGTAGCTCTGAAGAGCAAT
Found at i:22245649 original size:24 final size:24
Alignment explanation
Indices: 22245615--22245708 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
22245605 ACTTATCCGG
22245615 GCAATATAACGAGAAGCTCCAAAGA
1 GCAAT-TAACGAGAAGCTCCAAAGA
* * *
22245640 GCAATTAACGGGTAGCTCCGAAGA
1 GCAATTAACGAGAAGCTCCAAAGA
* * *
22245664 GCAATTAACGGGTAGCTCCGAAGA
1 GCAATTAACGAGAAGCTCCAAAGA
* *
22245688 GCAATTAATGAGAAGCACCAA
1 GCAATTAACGAGAAGCTCCAA
22245709 GTAGCCATAG
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
24 56 0.92
25 5 0.08
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.15
Consensus pattern (24 bp):
GCAATTAACGAGAAGCTCCAAAGA
Found at i:22245806 original size:26 final size:26
Alignment explanation
Indices: 22245745--22245800 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
22245735 GAGCACTAAC
*
22245745 GGGAAGCTCACAAAGAGCCTTTAATT
1 GGGAAGCTCACAAAGAGCCTATAATT
*
22245771 GGGAAGCTCACGAAGAGCCATATAA-T
1 GGGAAGCTCACAAAGAGCC-TATAATT
22245797 GGGA
1 GGGA
22245801 CACTCATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (26 bp):
GGGAAGCTCACAAAGAGCCTATAATT
Found at i:22250240 original size:21 final size:20
Alignment explanation
Indices: 22250211--22250256 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
22250201 TGGAATGCAA
22250211 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
22250232 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
22250252 T-AACC
1 TCAACC
22250257 ATTTCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:22251198 original size:19 final size:19
Alignment explanation
Indices: 22251167--22251203 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
22251157 TAAGTGCACT
22251167 TTAATTATTTTTT-AAAAA
1 TTAATTATTTTTTGAAAAA
22251185 TTAATTATTTTTTTGAAAA
1 TTAATTA-TTTTTTGAAAA
22251204 GAATTTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 6 0.35
20 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
TTAATTATTTTTTGAAAAA
Found at i:22254759 original size:27 final size:27
Alignment explanation
Indices: 22254725--22254785 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
22254715 CAGAAAGGCT
*
22254725 GTAAAATTA-CTGGAATACCCTCGAAGG
1 GTAAAATTATC-GAAATACCCTCGAAGG
22254752 GTAAAATTATCGAAATACCCTCGAAGG
1 GTAAAATTATCGAAATACCCTCGAAGG
22254779 GTAAAAT
1 GTAAAAT
22254786 GACCGTAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGAAGG
Found at i:22254881 original size:24 final size:24
Alignment explanation
Indices: 22254854--22254899 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
22254844 ATTTTCCTGT
*
22254854 GATGTAATTAAATGATTTGTCTAA
1 GATGTAAATAAATGATTTGTCTAA
* *
22254878 GATGTAAATGACTGATTTGTCT
1 GATGTAAATAAATGATTTGTCT
22254900 GTGATTGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.41
Consensus pattern (24 bp):
GATGTAAATAAATGATTTGTCTAA
Found at i:22254910 original size:24 final size:25
Alignment explanation
Indices: 22254866--22254929 Score: 96
Period size: 24 Copynumber: 2.6 Consensus size: 25
22254856 TGTAATTAAA
**
22254866 TGATTTGTCTAAGA-TGTAAATGAC
1 TGATTTGTCTGTGATTGTAAATGAC
22254890 TGATTTGTCTGTGATTG-AAATGAC
1 TGATTTGTCTGTGATTGTAAATGAC
22254914 TGATTTGTCTGTGATT
1 TGATTTGTCTGTGATT
22254930 TGTATCACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 35 0.95
25 2 0.05
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (25 bp):
TGATTTGTCTGTGATTGTAAATGAC
Found at i:22255076 original size:27 final size:27
Alignment explanation
Indices: 22255016--22255070 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
22255006 TACTATACTA
22255016 GTGGC-TCTGCCACAATCACTGTAACTG
1 GTGGCTTC-GCCACAATCACTGTAACTG
*
22255043 GTGGCTTCGCCACATAT-ACTGTTACTG
1 GTGGCTTCGCCACA-ATCACTGTAACTG
22255070 G
1 G
22255071 GAGCTTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.29
Consensus pattern (27 bp):
GTGGCTTCGCCACAATCACTGTAACTG
Found at i:22255096 original size:26 final size:26
Alignment explanation
Indices: 22255058--22255111 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
22255048 TTCGCCACAT
* *
22255058 ATACTGTTACTGGGAGCTTTGTTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
22255084 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
22255110 AT
1 AT
22255112 GCTATTAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:22255169 original size:32 final size:32
Alignment explanation
Indices: 22255126--22255300 Score: 212
Period size: 32 Copynumber: 5.5 Consensus size: 32
22255116 TTAATGGCTT
*
22255126 TGTGCCGATCATATTACCATTACTGATGGTTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
* * * *
22255158 TGTACCAATCATATTACCATTACTGATGGCTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
*
22255190 TGTGCCGATCATATTACTACTACTGATGGCTT-
1 TGTGCCGATCATATTACTATTACTGATGG-TTG
* *
22255222 TGTGCCGATCATACTACTATTACT-ATGGCTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
* *
22255253 TGTGCCGATCATATTACTACTACTGAAGGGTT-
1 TGTGCCGATCATATTACTATTACTG-ATGGTTG
*
22255285 TGTGCCAATCATATTA
1 TGTGCCGATCATATTA
22255301 TTGTACTTAT
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.01
31 26 0.21
32 91 0.74
33 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (32 bp):
TGTGCCGATCATATTACTATTACTGATGGTTG
Found at i:22255199 original size:64 final size:62
Alignment explanation
Indices: 22255119--22255300 Score: 256
Period size: 64 Copynumber: 2.9 Consensus size: 62
22255109 GATGCTATTA
* * * *
22255119 ATGGCTTTGTGCCGATCATATTACCATTACTGATGGTTGTGTACCAATCATATTACCATTACT
1 ATGGCTGTGTGCCGATCATATTACTACTACTGATGGTT-TGTGCCAATCATATTACCATTACT
* * *
22255182 GATGGCTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTACT
1 -ATGGCTGTGTGCCGATCATATTACTACTACTGATGG-TTTGTGCCAATCATATTACCATTACT
*
22255246 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTA
1 ATGGCTGTGTGCCGATCATATTACTACTACTG-ATGGTTTGTGCCAATCATATTA
22255301 TTGTACTTAT
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
63 48 0.45
64 56 0.53
65 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (62 bp):
ATGGCTGTGTGCCGATCATATTACTACTACTGATGGTTTGTGCCAATCATATTACCATTACT
Found at i:22255312 original size:63 final size:63
Alignment explanation
Indices: 22255119--22255314 Score: 236
Period size: 63 Copynumber: 3.1 Consensus size: 63
22255109 GATGCTATTA
* * * * * * *
22255119 ATGGCTTTGTGCCGATCATATTACCATTACTG-ATGGTTGTGTACCAATCATATTACCATTACTG
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTT-TGTGCCAATCATATTA-CTTTACTT
* * * *
22255183 ATGGCTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTAC-T
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACT-TTACTT
22255246 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTA-TTGTACTT
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACTT-TACTT
22255309 ATGGCT
1 ATGGCT
22255315 TGTAGCAATT
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
61 1 0.01
62 4 0.04
63 59 0.52
64 46 0.41
65 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.37
Consensus pattern (63 bp):
ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACTTTACTT
Found at i:22265359 original size:54 final size:54
Alignment explanation
Indices: 22265258--22265424 Score: 214
Period size: 54 Copynumber: 3.1 Consensus size: 54
22265248 TCGTCATTTA
*** *
22265258 TCTTC-TTTCCCCATATGGCATCATAGT-CCAAACTAGGTCTTACACTATGTGG
1 TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
22265310 TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
1 TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
* * * * * *
22265364 TATT-TTATTCCCCATATGATGCCATAATCCCAGACTAGATCTTACACTATATAG
1 TCTTCTT-TTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
22265418 TCTTCTT
1 TCTTCTT
22265425 GACATGACCA
Statistics
Matches: 100, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
52 5 0.05
53 21 0.21
54 72 0.72
55 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (54 bp):
TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
Found at i:22268459 original size:43 final size:42
Alignment explanation
Indices: 22268369--22268511 Score: 180
Period size: 43 Copynumber: 3.4 Consensus size: 42
22268359 AGGGTTACCA
* *
22268369 AGATTACGTGTAAGACCATATCTGG-GATATGGCATCGATATG
1 AGATTACGTGTAAGACCATGTCTGGACAT-TGGCATCGATATG
*
22268411 AGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATG
1 AGATTACGTGTAAGACCATGTCT-GGACATTGGCATCGATATG
* * * *
22268454 TGATTTCGTGTAAGACCATGGCTGGGCTATTGGCATCGATATG
1 AGATTACGTGTAAGACCATGTCTGGAC-ATTGGCATCGATATG
*
22268497 AGATTACATGTAAGA
1 AGATTACGTGTAAGA
22268512 TCATATTTGG
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
42 24 0.27
43 63 0.71
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATGTCTGGACATTGGCATCGATATG
Found at i:22275600 original size:17 final size:17
Alignment explanation
Indices: 22275570--22275602 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22275560 TGGGTCCTAA
22275570 AAATGCTTCATCTCCTC
1 AAATGCTTCATCTCCTC
22275587 AAAT-CTTCAGTCTCCT
1 AAATGCTTCA-TCTCCT
22275603 ATGTGGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATGCTTCATCTCCTC
Found at i:22278224 original size:161 final size:162
Alignment explanation
Indices: 22277947--22278272 Score: 600
Period size: 161 Copynumber: 2.0 Consensus size: 162
22277937 TTGATGATTC
22277947 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
22278012 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
66 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
22278077 CTGCAGTTTGAGG-ATCGTCTTTAATGGCAAT
131 CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
*
22278108 ACCTGGTGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
* * *
22278173 CTACAAAGGTGGCATTATTTGGATGTTTATCTTTCCAGGGAAAATCACCATTCTTGCTACTATCG
66 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
*
22278238 CTGCAGTTTGAGGTTTCGTCTTTAATGGCAAT
131 CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
22278270 ACC
1 ACC
22278273 ACCAATATCA
Statistics
Matches: 159, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
161 139 0.87
162 20 0.13
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (162 bp):
ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
Found at i:22283910 original size:35 final size:35
Alignment explanation
Indices: 22283823--22283918 Score: 104
Period size: 35 Copynumber: 2.7 Consensus size: 35
22283813 ATGAATATTT
* **
22283823 TGATTATGATTCACATGTTAAGCATGCTATTGTTC
1 TGATTATGATTCACATGTTAAGCATGCCATAATTC
** *
22283858 TGCCTATGACTT-GCATGTTAAGCATGCCATAATTC
1 TGATTATGA-TTCACATGTTAAGCATGCCATAATTC
* *
22283893 TGATTTTGATTCACATGTTAAACATG
1 TGATTATGATTCACATGTTAAGCATG
22283919 TCACTGTGTT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
34 2 0.04
35 44 0.92
36 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (35 bp):
TGATTATGATTCACATGTTAAGCATGCCATAATTC
Found at i:22286894 original size:10 final size:10
Alignment explanation
Indices: 22286881--22286914 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
22286871 GGTTTGTTAT
22286881 TTTTGTAGGA
1 TTTTGTAGGA
22286891 TTTTGTAGGA
1 TTTTGTAGGA
22286901 TTTTGTAGGA
1 TTTTGTAGGA
22286911 TTTT
1 TTTT
22286915 AAGTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (10 bp):
TTTTGTAGGA
Found at i:22286924 original size:20 final size:21
Alignment explanation
Indices: 22286878--22286925 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
22286868 TATGGTTTGT
*
22286878 TATTTTTGTAGGATTTTGTAG
1 TATTTTTGTAGGATTTTGAAG
*
22286899 GA-TTTTGTAGGATTTT-AAG
1 TATTTTTGTAGGATTTTGAAG
22286918 TATTTTTG
1 TATTTTTG
22286926 ATAATGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.13
20 19 0.83
21 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.56
Consensus pattern (21 bp):
TATTTTTGTAGGATTTTGAAG
Found at i:22288975 original size:32 final size:32
Alignment explanation
Indices: 22288939--22289004 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
22288929 ATTCTAAAAG
22288939 GTTGTCCTACTAGGACTTAATAACATTAGCTA
1 GTTGTCCTACTAGGACTTAATAACATTAGCTA
22288971 GTTGTCCTACTAGGACTTAATAACATTAGCTA
1 GTTGTCCTACTAGGACTTAATAACATTAGCTA
22289003 GT
1 GT
22289005 ATATGACACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (32 bp):
GTTGTCCTACTAGGACTTAATAACATTAGCTA
Found at i:22292640 original size:18 final size:19
Alignment explanation
Indices: 22292609--22292645 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
22292599 CACAAGTTAG
22292609 TAAGTTCATACATA-CATA
1 TAAGTTCATACATATCATA
22292627 TAAGTTCA-ATCATATCATA
1 TAAGTTCATA-CATATCATA
22292646 GTGAATTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.06
18 12 0.71
19 4 0.24
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.35
Consensus pattern (19 bp):
TAAGTTCATACATATCATA
Found at i:22293360 original size:18 final size:19
Alignment explanation
Indices: 22293314--22293360 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
22293304 AAATAATTTC
22293314 ATTCAATT-AAGTACTTCA
1 ATTCAATTCAAGTACTTCA
*
22293332 ATT-AACCTCAAGTA-TTCA
1 ATTCAA-TTCAAGTACTTCA
22293350 ATTCAATTCAA
1 ATTCAATTCAA
22293361 TCTATAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.08
18 15 0.62
19 7 0.29
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.36
Consensus pattern (19 bp):
ATTCAATTCAAGTACTTCA
Found at i:22295478 original size:37 final size:37
Alignment explanation
Indices: 22295437--22295610 Score: 244
Period size: 37 Copynumber: 4.7 Consensus size: 37
22295427 GGCGGATGTA
*
22295437 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
*
22295474 TAGCTCTTATGAGCATTTGGCGTGTTTATGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
*
22295511 TAGCTCTTATGAGCATTTGATGTGTTTATGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
* * *
22295548 TAGCTCTTATGAGCATTCG--GTGCATTATTGGTTAGAT
1 TAGCTCTTATGAGCATTTGACGTG-TTTA-TGGTTGGAT
* *
22295585 TAGCTCTTATGAGCGTTTGGCGTGTT
1 TAGCTCTTATGAGCATTTGACGTGTT
22295611 CAGTTGGACT
Statistics
Matches: 123, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
35 3 0.02
36 3 0.02
37 113 0.92
38 1 0.01
39 3 0.02
ACGTcount: A:0.18, C:0.12, G:0.28, T:0.43
Consensus pattern (37 bp):
TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
Found at i:22297356 original size:24 final size:25
Alignment explanation
Indices: 22297262--22297384 Score: 88
Period size: 26 Copynumber: 4.9 Consensus size: 25
22297252 ACAACTCTAA
* * *
22297262 TGAGCGTCCCGATATATGGCTCTTCG
1 TGAGCTTCCCGTTA-ATGGCTCTCCG
* * **
22297288 TGAGCTTCCCGATTAAAGTCTCTTTG
1 TGAGCTTCCCG-TTAATGGCTCTCCG
**
22297314 TGAGCTTCTTGATTAATGGCTCTCCG
1 TGAGCTTCCCG-TTAATGGCTCTCCG
*
22297340 -GAGCTTCCCGTTAATGGCTATCCG
1 TGAGCTTCCCGTTAATGGCTCTCCG
* * *
22297364 -GAGCTACCCATTATTGGCTCT
1 TGAGCTTCCCGTTAATGGCTCT
22297385 TATGAGCTTC
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
24 30 0.38
25 8 0.10
26 38 0.49
27 2 0.03
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (25 bp):
TGAGCTTCCCGTTAATGGCTCTCCG
Found at i:22305037 original size:26 final size:26
Alignment explanation
Indices: 22305008--22305080 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
22304998 CCCGATATAT
22305008 GGCTTTTCATGAGCTTTTCGATTAAA
1 GGCTTTTCATGAGCTTTTCGATTAAA
* *
22305034 GGCTCTTT-GTGAGCTTCTT-GATTAAT
1 GGCT-TTTCATGAGCTT-TTCGATTAAA
* *
22305060 GGCTTTCCA-GAGCTTCTCGAT
1 GGCTTTTCATGAGCTTTTCGAT
22305081 ATGGCTCGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
24 1 0.03
25 11 0.29
26 21 0.55
27 5 0.13
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (26 bp):
GGCTTTTCATGAGCTTTTCGATTAAA
Found at i:22307824 original size:36 final size:36
Alignment explanation
Indices: 22307774--22307910 Score: 193
Period size: 36 Copynumber: 3.8 Consensus size: 36
22307764 ATGATTATCG
*
22307774 ATATTCTGATTTGCATGTTAATCATGCCATATTCTA
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
* * *
22307810 ATGTTCTGATTTGCATGTTAAGCTTGCCATATTCTG
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
*
22307846 ATATTCTGATTTGCATGTTAAGCATGCCATTTTCTA
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
* * * *
22307882 ATATTTTGATTCGTATGTAAAGCATGCCA
1 ATATTCTGATTTGCATGTTAAGCATGCCA
22307911 CTGAAAATCT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (36 bp):
ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
Found at i:22308050 original size:49 final size:49
Alignment explanation
Indices: 22307973--22308072 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 49
22307963 TACGGAGCAA
* * * *
22307973 GTATCTGGCAGTAAATCTACATTTTCTGGTAGCTTGTCCACATTATTCT
1 GTATCTGGCAGTAAATCTACAATATCTGGTAGCTTGACCACACTATTCT
* * * * *
22308022 GTATCTTGCAGTAAATTTGCAATATCTGGTGGTTTGACCACACTATTCT
1 GTATCTGGCAGTAAATCTACAATATCTGGTAGCTTGACCACACTATTCT
22308071 GT
1 GT
22308073 TTCTAGAAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (49 bp):
GTATCTGGCAGTAAATCTACAATATCTGGTAGCTTGACCACACTATTCT
Found at i:22309465 original size:107 final size:106
Alignment explanation
Indices: 22309186--22309513 Score: 523
Period size: 107 Copynumber: 3.1 Consensus size: 106
22309176 ATAACATGGA
* * *
22309186 TTGAAA-TTTAAGAGGATATTTGGGTATTTGGTCGAACGAGAAATCAAAACCCAGCACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
* * * * *
22309250 CACGTTTTCTTGAATTTCCAAACGTAAAATATTACCTTGCT
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
22309291 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
** *
22309356 CACGTTTTCTCGATTTTTTAAACACAAAATATTGCCTTACT
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
* *
22309397 TTGAAATTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTACG
1 TTGAAATTTT-AAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGG
22309462 GCACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
65 GCACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
22309504 TTGAAATTTT
1 TTGAAATTTT
22309514 TGAATTAGAA
Statistics
Matches: 205, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
105 6 0.03
106 98 0.48
107 101 0.49
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (106 bp):
TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
Found at i:22311679 original size:44 final size:44
Alignment explanation
Indices: 22311630--22311730 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 44
22311620 TCTATTGTAG
* ** *
22311630 CTTCAGGGAGATAGGATTAATAGCTTCAATTTGCTCCGCTACAA
1 CTTCAGGGAGATAGGAATAATAGCTTCAACCTGCTCCACTACAA
* ** * *
22311674 GTTCAGGGAGATAGGAATGGTATCTTCAACCTGCTCCACTGCAA
1 CTTCAGGGAGATAGGAATAATAGCTTCAACCTGCTCCACTACAA
22311718 CTTCAGGGAGATA
1 CTTCAGGGAGATA
22311731 AGGCTTGATG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (44 bp):
CTTCAGGGAGATAGGAATAATAGCTTCAACCTGCTCCACTACAA
Found at i:22311795 original size:85 final size:85
Alignment explanation
Indices: 22311706--22311996 Score: 356
Period size: 85 Copynumber: 3.4 Consensus size: 85
22311696 TCTTCAACCT
* * * *
22311706 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGATGCGATATGCTCTACTACAACTTCAAAAAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGGATTGATGCGATCTGCTCTACTACAACTTCAGAGAGAT
*
22311771 AAGATCTGTGGTTTTATTCC
66 AAGATCTGTGGTTTTAATCC
* *
22311791 GCTCCACTGCAACTTCAGGGAGATAA-AATTGGATGCGATCTACTCTACTACAACTTCAGAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGGATT-GATGCGATCTGCTCTACTACAACTTCAGAGAGA
*
22311855 TAAGATCTATGGTTTTAATCC
65 TAAGATCTGTGGTTTTAATCC
* * * * *
22311876 GCTCCACTGCAACTTCAGGGAGAT-AGGATTGGTTTCTTCTG-TCTGCTCCACTGCCACTTCAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGGATT-G---ATGC-GATCTGCTCTACTACAACTTCAGA
*
22311939 GAGATCAGATCTGTGGTTTTAATCC
61 GAGATAAGATCTGTGGTTTTAATCC
* *
22311964 ACTCCACTGCAACTTCAGAGAGAT-AGGATTGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGGATTGAT
22311997 TTCTTCTGTC
Statistics
Matches: 180, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
84 4 0.02
85 103 0.57
87 1 0.01
88 71 0.39
89 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (85 bp):
GCTCCACTGCAACTTCAGGGAGATAAGGATTGATGCGATCTGCTCTACTACAACTTCAGAGAGAT
AAGATCTGTGGTTTTAATCC
Found at i:22311806 original size:44 final size:44
Alignment explanation
Indices: 22311747--22312088 Score: 211
Period size: 44 Copynumber: 7.9 Consensus size: 44
22311737 GATGCGATAT
* * * * *
22311747 GCTCTACTACAACTTCAAAAAGATAAGATCTGTGGTTTTATTCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * *** *
22311791 GCTCCACTGCAACTTCAGGGAGATAA-A-AT-TGGATGCGATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * *
22311832 ACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * ** *
22311876 GCTCCACTGCAACTTCAGGGAGATAGGAT-TG-GTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-AATCC
* *
22311920 GCTCCACTGCCACTTCAGAGAGATCAGATCTGTGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * ** *
22311964 ACTCCACTGCAACTTCAGAGAGATAGGAT-TGAT--TTCTTCTGTCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTG-TGGTT-TT-AATCC
* * * *** *
22312008 GCTCCACTGCAACTTCAGGGAGATAAGA-C--TAGATGCGATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * *
22312049 GCTCTATTGCAACTTCAGAGAGATAAGATCTGTAGTTTTA
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
22312089 CCGATCTGTT
Statistics
Matches: 220, Mismatches: 62, Indels: 32
0.70 0.20 0.10
Matches are distributed among these distances:
41 57 0.26
42 8 0.04
43 10 0.05
44 138 0.63
45 4 0.02
46 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
Found at i:22311969 original size:88 final size:88
Alignment explanation
Indices: 22311746--22312035 Score: 372
Period size: 88 Copynumber: 3.3 Consensus size: 88
22311736 TGATGCGATA
* * * * *
22311746 TGCTCTACTACAACTTCAAAAAGATAAGATCTGTGGTTTTATTCCGCTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
** * *
22311811 AGATAAAATTGG---ATGC-GATC
66 AGATAGGATTGGTTTCTTCTG-TC
* * * *
22311831 TACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
22311896 AGATAGGATTGGTTTCTTCTGTC
66 AGATAGGATTGGTTTCTTCTGTC
* * * *
22311919 TGCTCCACTGCCACTTCAGAGAGATCAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
*
22311984 AGATAGGATTGATTTCTTCTGTC
66 AGATAGGATTGGTTTCTTCTGTC
*
22312007 TGCTCCACTGCAACTTCAGGGAGATAAGA
1 TGCTCCACTGCAACTTCAGAGAGATAAGA
22312036 CTAGATGCGA
Statistics
Matches: 180, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
85 70 0.39
88 109 0.61
89 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (88 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
AGATAGGATTGGTTTCTTCTGTC
Found at i:22323485 original size:93 final size:94
Alignment explanation
Indices: 22323350--22323737 Score: 305
Period size: 106 Copynumber: 3.9 Consensus size: 94
22323340 AATTTAAGAG
* * * *
22323350 GATATTTGGCAATTTGGTCGAACGAGAAATCAAAATCCAGCACATTAGGGTACTTTTTCTCGAAT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAA-CCAGCACATTAGGGCACATTTTCTCGAAT
*
22323415 TTCCAAACGTAAAATATTACATTGCTTT-A
65 TTCCAAACGCAAAATATTACATTGCTTTAA
* * *
22323444 -ATATTTGGCTATTTGGTCGAACGAGAAATCGACACCTAGCACCTTAGGGCACATTTTCTCGATT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACC-AGCACATTAGGGCACATTTTCTCGAAT
* * **
22323508 TTCCAAACACAAAATATTGCCTTACTTTAAAATTTTAAAA
65 TTCCAAACGCAAAATA-----TTACATT---GCTTT--AA
* * *
22323548 GGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGAGCACGTTTTCTCGAA
1 -GATATTTGGCTATTTGGTCGAACGAGAAATCGAAA-CCAGCACATTAGGGCACATTTTCTCGAA
* *
22323613 TTTCCAAACGCAAAATATTGCCTTGCTTTGAAATTTTAAAA
64 TTTCCAAACGCAAAATATTACATTGC--------TTT--AA
* ** *
22323654 GGATATTTGGCTATTTGGTCGAAAGAGAAATCGAAACCCAATACGTTAGGGCA-AGTTTTCTCGA
1 -GATATTTGGCTATTTGGTCGAACGAGAAATCGAAA-CCAGCACATTAGGGCACA-TTTTCTCGA
* *
22323718 TTTTCGAAACGCAAAATATT
63 ATTTCCAAACGCAAAATATT
22323738 GCCTTTGAAA
Statistics
Matches: 241, Mismatches: 29, Indels: 36
0.79 0.09 0.12
Matches are distributed among these distances:
92 2 0.01
93 68 0.28
98 6 0.02
101 8 0.03
104 1 0.00
106 154 0.64
107 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (94 bp):
GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCAGCACATTAGGGCACATTTTCTCGAATT
TCCAAACGCAAAATATTACATTGCTTTAA
Found at i:22323629 original size:106 final size:106
Alignment explanation
Indices: 22323444--22323742 Score: 472
Period size: 106 Copynumber: 2.8 Consensus size: 106
22323434 CATTGCTTTA
* * * *
22323444 ATATTTGGCTATTTGGTCGAACGAGAAATCGACACCTAGCACCTTAGGGCACATTTTCTCGATTT
1 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
*
22323509 TCCAAACACAAAATATTGCCTTACTTTAAAATTTTAAAAGG
66 TCCAAACGCAAAATATTGCCTTACTTTAAAATTTTAAAAGG
* *
22323550 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGAGCACGTTTTCTCGAATT
1 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
* *
22323615 TCCAAACGCAAAATATTGCCTTGCTTTGAAATTTTAAAAGG
66 TCCAAACGCAAAATATTGCCTTACTTTAAAATTTTAAAAGG
* ** *
22323656 ATATTTGGCTATTTGGTCGAAAGAGAAATCGAAACCCAATACGTTAGGGCAAGTTTTCTCGATTT
1 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
*
22323721 TCGAAACGCAAAATATTGCCTT
66 TCCAAACGCAAAATATTGCCTT
22323743 TGAAATTTTT
Statistics
Matches: 177, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 177 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (106 bp):
ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
TCCAAACGCAAAATATTGCCTTACTTTAAAATTTTAAAAGG
Found at i:22325809 original size:16 final size:16
Alignment explanation
Indices: 22325790--22325853 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
22325780 CCTTAGACTT
22325790 TGAAAACTATAGATTC
1 TGAAAACTATAGATTC
* *
22325806 TGAAAACTAT--ACTG
1 TGAAAACTATAGATTC
22325820 TG-AAACTATAGATTC
1 TGAAAACTATAGATTC
*
22325835 -GAAAAACTATAGATAC
1 TG-AAAACTATAGATTC
22325851 TGA
1 TGA
22325854 TACTCTAGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
13 7 0.18
14 5 0.13
15 2 0.05
16 23 0.61
17 1 0.03
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (16 bp):
TGAAAACTATAGATTC
Found at i:22326729 original size:24 final size:25
Alignment explanation
Indices: 22326698--22326746 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
22326688 TAGTGGAGAA
22326698 AACCAAAA-TTTGGAGGAAGTGAAG
1 AACCAAAATTTTGGAGGAAGTGAAG
22326722 AACCAAAATTTTGGAGGAAGTGAAG
1 AACCAAAATTTTGGAGGAAGTGAAG
22326747 CGTTTGGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.45, C:0.08, G:0.29, T:0.18
Consensus pattern (25 bp):
AACCAAAATTTTGGAGGAAGTGAAG
Found at i:22330823 original size:33 final size:33
Alignment explanation
Indices: 22330783--22330849 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
22330773 TGATCGAGAA
22330783 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
1 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
22330816 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
1 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
22330849 G
1 G
22330850 TAGCATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.15, G:0.40, T:0.27
Consensus pattern (33 bp):
GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
Found at i:22332438 original size:86 final size:86
Alignment explanation
Indices: 22332293--22332464 Score: 326
Period size: 86 Copynumber: 2.0 Consensus size: 86
22332283 ACGAGTTTGA
*
22332293 TAGGTGCATCAATTGATTAGAAGATGTGACACGGCGCTTGGATAAGAAAGCTTTTGAAGACTTCA
1 TAGGTGCATCAATTGATTAGAAGATGCGACACGGCGCTTGGATAAGAAAGCTTTTGAAGACTTCA
22332358 TTTTGATGTTGTGGAATGTGT
66 TTTTGATGTTGTGGAATGTGT
*
22332379 TAGGTGCATCAATTGATTAGAGGATGCGACACGGCGCTTGGATAAGAAAGCTTTTGAAGACTTCA
1 TAGGTGCATCAATTGATTAGAAGATGCGACACGGCGCTTGGATAAGAAAGCTTTTGAAGACTTCA
22332444 TTTTGATGTTGTGGAATGTGT
66 TTTTGATGTTGTGGAATGTGT
22332465 AGAATAGTCA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.33
Consensus pattern (86 bp):
TAGGTGCATCAATTGATTAGAAGATGCGACACGGCGCTTGGATAAGAAAGCTTTTGAAGACTTCA
TTTTGATGTTGTGGAATGTGT
Found at i:22334641 original size:26 final size:26
Alignment explanation
Indices: 22334609--22334672 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
22334599 ACAAATTTTC
*
22334609 TCAAAATTTTACCGAGGGTAAAATTG
1 TCAAAATTTTACCGAGGGTAAAATCG
* **
22334635 TTAAAATTTTGTCGAGGGTAAAATCG
1 TCAAAATTTTACCGAGGGTAAAATCG
*
22334661 TCAAATTTTTAC
1 TCAAAATTTTAC
22334673 AATAGTAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (26 bp):
TCAAAATTTTACCGAGGGTAAAATCG
Found at i:22337708 original size:403 final size:403
Alignment explanation
Indices: 22336961--22337766 Score: 1612
Period size: 403 Copynumber: 2.0 Consensus size: 403
22336951 GAGAGAGAGA
22336961 GAATTCTAGAAGGTAATGATGATATTTGTGATATTTTTAATTAATTAGATAAATGTTATTTAATT
1 GAATTCTAGAAGGTAATGATGATATTTGTGATATTTTTAATTAATTAGATAAATGTTATTTAATT
22337026 AATATTTTATTAAGATTTTTAGTATTATTTTATTATTAAATGATTAATATAAAATGGAGGAAATA
66 AATATTTTATTAAGATTTTTAGTATTATTTTATTATTAAATGATTAATATAAAATGGAGGAAATA
22337091 TGACGAGAAATCATCAACCTCCCATGCATTCCAACGTATGAGGAAAAAAAAAGAAAGAAAATTTT
131 TGACGAGAAATCATCAACCTCCCATGCATTCCAACGTATGAGGAAAAAAAAAGAAAGAAAATTTT
22337156 GCTTTCTTTACAATTTGGTCCTTCCACCAAAACTTTATCATTTTCACCTAGAAATCAAAAGAATT
196 GCTTTCTTTACAATTTGGTCCTTCCACCAAAACTTTATCATTTTCACCTAGAAATCAAAAGAATT
22337221 TCCATAGCCATCAAGAGAGAAAGATAACAAAGAGACTATGGGGAGCTAGAATATCAAGTTAGATT
261 TCCATAGCCATCAAGAGAGAAAGATAACAAAGAGACTATGGGGAGCTAGAATATCAAGTTAGATT
22337286 CAAGAAACAGAAGCTGGAGGAGGGAGAAAATCAAGTTAAAGATTGAAATCAATAGCACAAGGTAA
326 CAAGAAACAGAAGCTGGAGGAGGGAGAAAATCAAGTTAAAGATTGAAATCAATAGCACAAGGTAA
22337351 GAATATCAAGATT
391 GAATATCAAGATT
22337364 GAATTCTAGAAGGTAATGATGATATTTGTGATATTTTTAATTAATTAGATAAATGTTATTTAATT
1 GAATTCTAGAAGGTAATGATGATATTTGTGATATTTTTAATTAATTAGATAAATGTTATTTAATT
22337429 AATATTTTATTAAGATTTTTAGTATTATTTTATTATTAAATGATTAATATAAAATGGAGGAAATA
66 AATATTTTATTAAGATTTTTAGTATTATTTTATTATTAAATGATTAATATAAAATGGAGGAAATA
22337494 TGACGAGAAATCATCAACCTCCCATGCATTCCAACGTATGAGGAAAAAAAAAGAAAGAAAATTTT
131 TGACGAGAAATCATCAACCTCCCATGCATTCCAACGTATGAGGAAAAAAAAAGAAAGAAAATTTT
22337559 GCTTTCTTTACAATTTGGTCCTTCCACCAAAACTTTATCATTTTCACCTAGAAATCAAAAGAATT
196 GCTTTCTTTACAATTTGGTCCTTCCACCAAAACTTTATCATTTTCACCTAGAAATCAAAAGAATT
22337624 TCCATAGCCATCAAGAGAGAAAGATAACAAAGAGACTATGGGGAGCTAGAATATCAAGTTAGATT
261 TCCATAGCCATCAAGAGAGAAAGATAACAAAGAGACTATGGGGAGCTAGAATATCAAGTTAGATT
22337689 CAAGAAACAGAAGCTGGAGGAGGGAGAAAATCAAGTTAAAGATTGAAATCAATAGCACAAGGTAA
326 CAAGAAACAGAAGCTGGAGGAGGGAGAAAATCAAGTTAAAGATTGAAATCAATAGCACAAGGTAA
22337754 GAATATCAAGATT
391 GAATATCAAGATT
22337767 TCAATATATT
Statistics
Matches: 403, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
403 403 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (403 bp):
GAATTCTAGAAGGTAATGATGATATTTGTGATATTTTTAATTAATTAGATAAATGTTATTTAATT
AATATTTTATTAAGATTTTTAGTATTATTTTATTATTAAATGATTAATATAAAATGGAGGAAATA
TGACGAGAAATCATCAACCTCCCATGCATTCCAACGTATGAGGAAAAAAAAAGAAAGAAAATTTT
GCTTTCTTTACAATTTGGTCCTTCCACCAAAACTTTATCATTTTCACCTAGAAATCAAAAGAATT
TCCATAGCCATCAAGAGAGAAAGATAACAAAGAGACTATGGGGAGCTAGAATATCAAGTTAGATT
CAAGAAACAGAAGCTGGAGGAGGGAGAAAATCAAGTTAAAGATTGAAATCAATAGCACAAGGTAA
GAATATCAAGATT
Found at i:22340406 original size:101 final size:101
Alignment explanation
Indices: 22340291--22340475 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 101
22340281 AAAGTGATGG
** *
22340291 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAT-G-ATGGGTCGCATGTGTAGC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGG-ATGGAAT-GGTCACATGTGTAGC
22340354 ACTATGTGTAGG-CTACTATGCGTACCGGATAGTTTCGA
64 ACTATGTGTAGGAC-ACTATGCGTACCGGATAGTTTCGA
* *
22340392 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGGATGG-AATGGTCACATGTGTAGCA
22340457 CTATGTGTAGGACACTATG
65 CTATGTGTAGGACACTATG
22340476 TGAACCGAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
100 2 0.03
101 39 0.52
102 31 0.41
103 3 0.04
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGGATGGAATGGTCACATGTGTAGCAC
TATGTGTAGGACACTATGCGTACCGGATAGTTTCGA
Found at i:22340434 original size:51 final size:51
Alignment explanation
Indices: 22340287--22340482 Score: 202
Period size: 51 Copynumber: 3.9 Consensus size: 51
22340277 ATTGAAAGTG
* *
22340287 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * * *
22340336 ATGGGTCGCATGTGTAGCACTATGTGTAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * * ** * *
22340387 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* *
22340439 ATGGTCACATGTGTAGTACTATGTGTAGGAC-ACTATGTGAACCG
1 ATGGTCACATGTGTAGTACTATGTGCAGG-CTACTATGTGTACCG
22340483 AACATCACTG
Statistics
Matches: 117, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 73 0.62
52 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
Found at i:22348440 original size:25 final size:25
Alignment explanation
Indices: 22348403--22348461 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
22348393 TCTTGTACAT
* *
22348403 GTATGCTCATACGAGCTGTGAATTA
1 GTATGCTCATACGAGCTATAAATTA
*
22348428 GTATGCTCTTACGAGCTATAAATTA
1 GTATGCTCATACGAGCTATAAATTA
*
22348453 GTAAGCTCA
1 GTATGCTCA
22348462 GATGAGCAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATAAATTA
Found at i:22348482 original size:25 final size:25
Alignment explanation
Indices: 22348454--22348534 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 25
22348444 TATAAATTAG
* * *
22348454 TAAGCTCAGATGAGCAGAGAATCGA
1 TAAGCTCATACGAGCTGAGAATCGA
* * *
22348479 TAAGCTCTTACGAGCTG-CAATCGG
1 TAAGCTCATACGAGCTGAGAATCGA
*
22348503 TAAGCTCATACGAGCTGAGTATCGA
1 TAAGCTCATACGAGCTGAGAATCGA
22348528 TAAGCTC
1 TAAGCTC
22348535 TCGCAAGCTG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
24 21 0.47
25 24 0.53
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (25 bp):
TAAGCTCATACGAGCTGAGAATCGA
Found at i:22348506 original size:24 final size:24
Alignment explanation
Indices: 22348473--22348534 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
22348463 ATGAGCAGAG
*
22348473 AATCGATAAGCTCTTACGAGCTGC
1 AATCGATAAGCTCATACGAGCTGC
*
22348497 AATCGGTAAGCTCATACGAGCTG-
1 AATCGATAAGCTCATACGAGCTGC
22348520 AGTATCGATAAGCTC
1 A--ATCGATAAGCTC
22348535 TCGCAAGCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 1 0.03
24 21 0.64
25 11 0.33
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (24 bp):
AATCGATAAGCTCATACGAGCTGC
Found at i:22348544 original size:49 final size:49
Alignment explanation
Indices: 22348453--22348548 Score: 129
Period size: 49 Copynumber: 2.0 Consensus size: 49
22348443 CTATAAATTA
* * *
22348453 GTAAGCTCAGATGAGCAGAGAATCGATAAGCTCTTACGAGCTGCAATCG
1 GTAAGCTCAGACGAGCAGAGAATCGATAAGCTCTCACAAGCTGCAATCG
* * * *
22348502 GTAAGCTCATACGAGCTGAGTATCGATAAGCTCTCGCAAGCTGCAAT
1 GTAAGCTCAGACGAGCAGAGAATCGATAAGCTCTCACAAGCTGCAAT
22348549 TTGTAATCCC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (49 bp):
GTAAGCTCAGACGAGCAGAGAATCGATAAGCTCTCACAAGCTGCAATCG
Found at i:22354876 original size:27 final size:26
Alignment explanation
Indices: 22354826--22354881 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
22354816 ATTTTTTTTA
*
22354826 AAATTTTATAATTTTTTAAAAAATAT
1 AAATGTTATAATTTTTTAAAAAATAT
*
22354852 AAATGTTA-AATTATTTTATAAAAATTT
1 AAATGTTATAATT-TTTTA-AAAAATAT
22354879 AAA
1 AAA
22354882 AATTATTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 4 0.15
26 12 0.46
27 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
AAATGTTATAATTTTTTAAAAAATAT
Found at i:22356504 original size:44 final size:44
Alignment explanation
Indices: 22356424--22356911 Score: 284
Period size: 44 Copynumber: 10.9 Consensus size: 44
22356414 TCATGGTGAA
*
22356424 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCCACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAG
* * * ** *
22356468 TCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAGTGAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA--CAAG
* * * * *
22356513 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTATAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC----CA-CA-AG
* * * *
22356563 ATCTTATCTCTCTGAATTTGCAGTAGAGCAGA-TCATAG-CA-AA-
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGCCACAAG
*
22356605 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAG
* * **
22356649 TCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCATA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CA-AG
* * * *
22356694 TCTTATTTCCCTGAAGTTGCAGTGGAACAGA-TAAAGCTATAAATTACATA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC-------CACA-AG
* * * *
22356744 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCATAG-CA-AAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGCCACAAG
* * **
22356786 T-TTATCTCCCTAAAGTTGCAGTAGG-GCAGGTTGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCCACAAG
* * ** *
22356829 TCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATGGAGAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--CCACAAG
* * * *
22356874 TCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
22356912 TATAAATTGA
Statistics
Matches: 346, Mismatches: 65, Indels: 67
0.72 0.14 0.14
Matches are distributed among these distances:
41 55 0.16
42 10 0.03
43 9 0.03
44 102 0.29
45 92 0.27
46 7 0.02
48 2 0.01
49 2 0.01
50 35 0.10
51 32 0.09
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAG
Found at i:22356625 original size:41 final size:41
Alignment explanation
Indices: 22356563--22356859 Score: 177
Period size: 41 Copynumber: 6.8 Consensus size: 41
22356553 TAAATTATAG
* *
22356563 ATCTTATCTCTCTGAATTTGCAGTAGAGCAGATCATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATAGCAA
* * *
22356604 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGA-AGCCACA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TCATAG-CA-A
* * * *
22356647 AGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAT
1 A-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAA
* * * * *
22356693 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATAAAGCTATAAATTACAT
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGAT----C-AT--A--GCAA
*
22356743 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATAGCAA
* * * *
22356784 A-CTTTATCTCCCTAAAGTTGCAGTAGGGCAGGTTGA-AGTTACAA
1 ATC-TTATCTCCCTGAAGTTGCAGTAGAGCA-GATCATAG---CAA
* * *
22356828 GTCTTATCTACCTGAAGTTGCAGTGGAGCAGA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA
22356860 CTGAAGATGG
Statistics
Matches: 203, Mismatches: 33, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
40 1 0.00
41 59 0.29
42 7 0.03
43 4 0.02
44 57 0.28
45 32 0.16
46 4 0.02
47 4 0.02
48 3 0.01
50 32 0.16
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (41 bp):
ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATAGCAA
Found at i:22356830 original size:180 final size:179
Alignment explanation
Indices: 22356422--22356919 Score: 777
Period size: 180 Copynumber: 2.8 Consensus size: 179
22356412 CATCATGGTG
* * *
22356422 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCCACAAGTCTTATCTCCCTAAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTG
22356487 CAGTGGAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
66 CAGTGGAGCAGACTGAAGATA--GAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
* *
22356552 ATAAATTATAGATCTTATCTCTCTGAATTTGCAGTAGAGCAGATCATAGCA
129 ATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCA
* *
22356603 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAGTCTCATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTG
22356668 CAGTGGAGCAGACTGAAGATAGCATATCTTATTTCCCTGAAGTTGCAGTGGAACAGA-TAAAGCT
66 CAGTGGAGCAGACTGAAGATAG-A-ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
*
22356732 ATAAATTACATATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCA
129 ATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCA
* * ** *
22356783 AA-CTTTATCTCCCTAAAGTTGCAGTAGG-GCAGGTTGAAGTTACAAGTCTTATCTACCTGAAGT
1 AATC-TTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGT
*
22356846 TGCAGTGGAGCAGACTGAAGATGGAGAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAG
64 TGCAGTGGAGCAGACTGAAGAT--AGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAG
22356911 CTATAAATT
127 CTATAAATT
22356920 GAAGTGTTTT
Statistics
Matches: 294, Mismatches: 16, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
179 2 0.01
180 160 0.54
181 130 0.44
182 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (179 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACTGAAGATAGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
AAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCA
Found at i:22358261 original size:50 final size:50
Alignment explanation
Indices: 22358186--22358375 Score: 222
Period size: 51 Copynumber: 3.8 Consensus size: 50
22358176 ATTATTATCA
* * * *
22358186 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTT
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTT
* *
22358236 TTCGGTTCACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAGC-C
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CTT
* *
22358286 TTCTGGTACACATAGTAGCCTGCACATAGTACTACACAAGTGACCATTA-TCT
1 TTC-GGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-AACT-T
* * * *
22358338 ATCGATACACGTAGTAGCCTGCACTTAGTACTACACAC
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACAC
22358376 ATGTTTATAG
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
50 45 0.38
51 72 0.60
52 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTT
Found at i:22359864 original size:44 final size:42
Alignment explanation
Indices: 22359749--22360042 Score: 198
Period size: 44 Copynumber: 6.6 Consensus size: 42
22359739 TAAATTGCAT
* * *
22359749 ATCTTATCTCTCTGAAGTTGCAATAGAGCAGA-TCATAGC-A-A
1 ATCTTATCTCCCTGAAGTTGC-ATGGAGCAGATTGA-AGCTACA
* ** * * *
22359790 ACCTTATCTCCCTGAAGTTGTGGTGTAGCAGGTTGAAGTTACA
1 ATCTTATCTCCCTGAAGTTG-CATGGAGCAGATTGAAGCTACA
22359833 AGTCTTATCTCCCTGAAGTTGCTATGGAGCAGATTGAAGACATGATACAA
1 A-TCTTATCTCCCTGAAGTTGC-ATGGAGCAGATTGAAG-C----TAC-A
* * *
22359883 ATCTTATCTCCCTGAAGTTTCAGTGGAGCAGATTAAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCA-TGGAGCAGATTGAAGCTAC-A
* * * * * *
22359927 ACCTTATATCCCTAAAGTTGCAGTAGAGCCGATTGAAGATACTA
1 ATCTTATCTCCCTGAAGTTGCA-TGGAGCAGATTGAAGCTAC-A
* * *
22359971 ATCTTATCTCGCTGAAGTTGCAATGGAGCATATTGAAACTACTA
1 ATCTTATCTCCCTGAAGTTGC-ATGGAGCAGATTGAAGCTAC-A
* *
22360015 ATCCTACCTCCCTGAAGTTGCAGTGGAG
1 ATCTTATCTCCCTGAAGTTGCA-TGGAG
22360043 TGGATTAAAA
Statistics
Matches: 198, Mismatches: 40, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
41 26 0.13
42 3 0.02
43 3 0.02
44 125 0.63
45 1 0.01
48 2 0.01
49 36 0.18
50 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (42 bp):
ATCTTATCTCCCTGAAGTTGCATGGAGCAGATTGAAGCTACA
Found at i:22359961 original size:93 final size:93
Alignment explanation
Indices: 22359787--22359965 Score: 209
Period size: 93 Copynumber: 1.9 Consensus size: 93
22359777 CAGATCATAG
* * * * ** ** * *
22359787 CAAACCTTATCTCCCTGAAGTTGTGGTGTAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
1 CAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCACAAACCTTATATCCCTAAAGT
*
22359852 TGCTATGGAGCAGATTGAAGACATGATA
66 TGCTATAGAGCAGATTGAAGACATGATA
*
22359880 CAAATCTTATCTCCCTGAAGTT-TCAGTGGAGCAGATTAAAGCCACAAACCTTATATCCCTAAAG
1 CAAACCTTATCTCCCTGAAGTTGT-AGTGGAGCAGATTAAAGCCACAAACCTTATATCCCTAAAG
*
22359944 TTGC-AGTAGAGCCGATTGAAGA
65 TTGCTA-TAGAGCAGATTGAAGA
22359966 TACTAATCTT
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (93 bp):
CAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCACAAACCTTATATCCCTAAAGT
TGCTATAGAGCAGATTGAAGACATGATA
Found at i:22359997 original size:137 final size:134
Alignment explanation
Indices: 22359749--22360007 Score: 315
Period size: 137 Copynumber: 1.9 Consensus size: 134
22359739 TAAATTGCAT
* * * * **
22359749 ATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTGTGGT
1 ATCTTATCTCCCTGAAGTTGCAATAGAGCAGATCAAAGCAAACCTTATATCCCTAAAGTTGCAGT
* * *
22359814 GTAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCTATGGAGCAGATTGAAGACATGAT
66 GTAGCAGATTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGACATGAT
22359879 ACAA
131 ACAA
* * * *
22359883 ATCTTATCTCCCTGAAGTTTCAGTGGAGCAGATTAAAGCCACAAACCTTATATCCCTAAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAATAGAGCAGATCAAAG---CAAACCTTATATCCCTAAAGTTGC
* * *
22359948 AGTAG-AGCCGATTGAAGATACTAA-TCTTATCTCGCTGAAGTTGCAATGGAGCATATTGAA
63 AGT-GTAGCAGATTGAAGATAC-AAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAA
22360008 ACTACTAATC
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
134 32 0.31
137 69 0.66
138 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (134 bp):
ATCTTATCTCCCTGAAGTTGCAATAGAGCAGATCAAAGCAAACCTTATATCCCTAAAGTTGCAGT
GTAGCAGATTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGACATGAT
ACAA
Found at i:22360598 original size:13 final size:13
Alignment explanation
Indices: 22360580--22360604 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22360570 ATCCCGTCGC
22360580 CCACTTGCACCGT
1 CCACTTGCACCGT
22360593 CCACTTGCACCG
1 CCACTTGCACCG
22360605 GCAAAAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.20
Consensus pattern (13 bp):
CCACTTGCACCGT
Found at i:22361731 original size:15 final size:15
Alignment explanation
Indices: 22361713--22361765 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
22361703 TTTTAGATTT
22361713 TTATTATTGTTACTA
1 TTATTATTGTTACTA
**
22361728 TTATTATTAATACCATCA
1 TTATTATTGTTA-C-T-A
*
22361746 TTATTATTGTTAATA
1 TTATTATTGTTACTA
22361761 TTATT
1 TTATT
22361766 CTTAAATTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 16 0.53
16 2 0.07
17 1 0.03
18 11 0.37
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (15 bp):
TTATTATTGTTACTA
Found at i:22365361 original size:42 final size:42
Alignment explanation
Indices: 22365297--22365379 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
22365287 ATTTAAAAAG
22365297 TTAGTTGAAAGGTTCATCAAGATAGGCATCGTGAAGTTTGAA
1 TTAGTTGAAAGGTTCATCAAGATAGGCATCGTGAAGTTTGAA
*
22365339 TTAGTTGAAAGGTTCATTAAGATAGGCATCGTGAAGTTTGA
1 TTAGTTGAAAGGTTCATCAAGATAGGCATCGTGAAGTTTGA
22365380 CGATCCATCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.33
Consensus pattern (42 bp):
TTAGTTGAAAGGTTCATCAAGATAGGCATCGTGAAGTTTGAA
Found at i:22367516 original size:41 final size:44
Alignment explanation
Indices: 22367459--22367573 Score: 130
Period size: 41 Copynumber: 2.7 Consensus size: 44
22367449 AATTATAGAT
*
22367459 CTTATCTCTCTAAAGTTGCAGTAGAGCAGA-TCATAG-CA-AA-C
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATTCA-AGCCACAAGC
* * * * *
22367500 CTTATCTCTATGAAGTTGCAGTGGAGCAAATTGAAGCCACAAGT
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATTCAAGCCACAAGC
*
22367544 CTTATCTCTCTGAAGTTGCAGTAAAGCAGA
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGA
22367574 CTGAAGATAG
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 28 0.47
42 4 0.07
43 2 0.03
44 26 0.43
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGATTCAAGCCACAAGC
Found at i:22367559 original size:44 final size:43
Alignment explanation
Indices: 22367457--22368344 Score: 425
Period size: 44 Copynumber: 19.8 Consensus size: 43
22367447 TAAATTATAG
* * * *
22367457 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGA-TCATAG-CA-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGCCACA
* ** *
22367498 ACCTTATCTCTATGAAGTTGCAGTGGAGCAAATTGAAGCCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* ** * **
22367541 AGTCTTATCTCTCTGAAGTTGCAGTAAAGCAGACTGAAGATAGCGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-C-A
* * * * * * *
22367587 ATCTTATTTCCCTGAAGTTGTAGTGCAACAGATTAAAGCTATAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CA
** *
22367631 ATTACAGATTCTATCTCCCTGAAGTTGCAGTCAAGAAGATT-ATAG-CA-A
1 A-T-C----T-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGCCACA
* * * **
22367679 A-CATTATCTCTCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACA
1 ATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* **
22367722 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-C-A
* * * * *
22367768 ATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAACTATAAATTACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC-------CACA
* * * *
22367818 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCATAG-CAAA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGCCACA
* *
22367861 AT-TTATCTCCCTGAAGTTGCAGTGGGGCAGGTTGAAGCCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * **
22367903 AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAGCGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-C-A
* * * * *
22367949 ATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAACTATAAATTACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC-------CACA
* * * * * *
22367999 GATCTTATCTCTCTGAAATTGCAGTAGAGTAGATCGTAG-CA-A
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * ***
22368041 ACCTTATCTCCCTGAAGTTGCTGTGGAGCAGGTTGAATTTACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* *** **
22368084 AGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACAAAAGATAACCA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCA-CA
*
22368130 AGCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-C---C-AC-A
* * * *
22368179 ATCTCATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGACGCA-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-C-CACA
* * * * **
22368223 ACCTTATATCCCTGAAGTTGTAGTGGAGCAGGTTGAAGATACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CA
* * * *
22368267 ATCTTCTCTCCTTGAAGTTGCAGTGGAGCATATTGAAGCTACTA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAC-A
* * * *
22368311 TTCCTATCTCCCTAAAGTTGCAGTGGAGCGGATT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
22368345 AAAACGATGA
Statistics
Matches: 641, Mismatches: 149, Indels: 111
0.71 0.17 0.12
Matches are distributed among these distances:
41 110 0.17
42 18 0.03
43 11 0.02
44 220 0.34
45 134 0.21
46 11 0.02
47 2 0.00
48 3 0.00
49 37 0.06
50 7 0.01
51 84 0.13
52 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
Found at i:22367755 original size:181 final size:181
Alignment explanation
Indices: 22367447--22368296 Score: 1086
Period size: 181 Copynumber: 4.7 Consensus size: 181
22367437 TAGAATAGAT
* * **
22367447 TAAATTATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCTATG
1 TAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTG
** * * **
22367512 AAGTTGCAGTGGAGCAAATTGAAGCCACAAGTCTTATCTCTCTGAAGTTGCAGTAAAGCAGACTG
66 AAGTTGCAGTGGAGCAGGTTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
*
22367577 AAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGCAACAGATT-AAAGCTA
131 AAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAA-CTA
* * * * *
22367628 TAAATTACAGAT-TCTATCTCCCTGAAGTTGCAGTCA-AGAAGATTATAGCAAACATTATCTCTC
1 TAAATTACAGATCT-TATCTCTCTGAAGTTGCAGT-AGAGCAGATCATAGCAAACCTTATCTCCC
* *
22367691 TGAAGTTGCAGTGGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
64 TGAAGTTGCAGTGGAGCAGGTTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
22367756 TGAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAACTA
129 TGAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAACTA
**
22367809 TAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAAATTTATCTCCCTG
1 TAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTG
* * * *
22367874 AAGTTGCAGTGGGGCAGGTTGAAGCCACAAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTG
66 AAGTTGCAGTGGAGCAGGTTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
22367939 AAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAACTA
131 AAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAACTA
* * *
22367990 TAAATTACAGATCTTATCTCTCTGAAATTGCAGTAGAGTAGATCGTAGCAAACCTTATCTCCCTG
1 TAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTG
* ** * **
22368055 AAGTTGCTGTGGAGCAGGTTGAATTTACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACAA
66 AAGTTGCAGTGGAGCAGGTTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
* * * * * *
22368120 AAGATAACCAAGCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAC--
131 AAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAA-ACTA
*** * * * * * * *
22368170 -AGGCTACAAATCTCATCTC-CTTAAAGTTGCAGTGGAGCAGATTAAAGACGCAAACCTTATATC
1 TAAATTACAGATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGA-T-CATA-GCAAACCTTATCTC
* * * *
22368233 CCTGAAGTTGTAGTGGAGCAGGTTGAAGATACCAA-TCTTCTCTCCTTGAAGTTGCAGTGGAGCA
62 CCTGAAGTTGCAGTGGAGCAGGTTGAAGCTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
22368297 TATTGAAGCT
Statistics
Matches: 591, Mismatches: 67, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
178 1 0.00
179 30 0.05
180 3 0.01
181 481 0.81
182 73 0.12
183 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (181 bp):
TAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTG
AAGTTGCAGTGGAGCAGGTTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
AAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAACTA
Found at i:22367974 original size:89 final size:89
Alignment explanation
Indices: 22367820--22368296 Score: 339
Period size: 89 Copynumber: 5.3 Consensus size: 89
22367810 AAATTACAGA
* * * * ** *
22367820 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAAAATTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAGCAAACCTTATCTCCCTGAAGTTGT
*
22367881 AGTGGGGCAGGTTGAAGCCACAAG
66 AGTGGAGCAGGTTGAAGCCACAAG
* * * * *
22367905 TCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGT
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAGCAAACCTTATCTCCCTGAAGTTGT
* * * * *
22367970 AGTGGAACAGATTGAAACTATAAATTACAG
66 AGTGGAGCAGGTTGAAGC----CA-CA-AG
* * * *
22368000 ATCTTATCTCTCTGAAA-TTGCAGTAGAGTAGA-T--CG-TAGCAAACCTTATCTCCCTGAAGTT
1 -TCTTATCTCCCT-AAAGTTGCAGTGGAGCAGACTAAAGATAGCAAACCTTATCTCCCTGAAGTT
***
22368060 GCT-GTGGAGCAGGTTGAATTTACAAG
64 G-TAGTGGAGCAGGTTGAAGCCACAAG
* * * * * * *
22368086 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACAAAAGATAACCAAGCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAGCAAACCTTATCTCCCTGAAGTTGT
* *
22368151 AGTGGAGCAGATTGAAGACAGGCTACAAA
66 AGTGGAGCAGGTTGAAG-C---C-ACAAG
* * * * *
22368180 TCTCATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGA-CGCAAACCTTATATCCCTGAAGTTGT
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAGCAAACCTTATCTCCCTGAAGTTGT
**
22368244 AGTGGAGCAGGTTGAAGATACCAA-
66 AGTGGAGCAGGTTGAAGCCA-CAAG
* * *
22368268 TCTTCTCTCCTTGAAGTTGCAGTGGAGCA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCA
22368297 TATTGAAGCT
Statistics
Matches: 303, Mismatches: 64, Indels: 47
0.73 0.15 0.11
Matches are distributed among these distances:
84 2 0.01
85 50 0.17
86 3 0.01
87 1 0.00
88 29 0.10
89 77 0.25
92 36 0.12
93 39 0.13
94 37 0.12
95 3 0.01
96 23 0.08
97 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAGCAAACCTTATCTCCCTGAAGTTGT
AGTGGAGCAGGTTGAAGCCACAAG
Found at i:22368207 original size:138 final size:137
Alignment explanation
Indices: 22368046--22368347 Score: 319
Period size: 138 Copynumber: 2.2 Consensus size: 137
22368036 AGCAAACCTT
* * * * *** ** *
22368046 ATCTCCCTGAAGTTGCTGTGGAGCAGGTTGAATTTACAAGTCTTATCTCCCTGAAGTTGCAATGG
1 ATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGACACAAACCTTATATCCCTGAAGTTGCAATGG
22368111 AGCAGACAAAAGATAACCAAGCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTA
66 AGCAGACAAAAGAT-ACCAAGCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTA
22368176 CAAATCTC
130 CAAATCTC
* * * *
22368184 ATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGACGCAAACCTTATATCCCTGAAGTTGTAGTGG
1 ATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGACACAAACCTTATATCCCTGAAGTTGCAATGG
**** * * * *
22368249 AGCAGGTTGAAGATACCAATCTTCTCTCCTTGAAGTTGCAGTGGAGCATATT---GA-A-GCTAC
66 AGCAGACAAAAGATACCAAGCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTAC
* *
22368309 TATTC-C
131 AAATCTC
*
22368315 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAA
1 -ATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA
22368348 ACGATGAATC
Statistics
Matches: 137, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
131 1 0.01
132 38 0.28
133 1 0.01
134 2 0.01
137 34 0.25
138 61 0.45
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (137 bp):
ATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGACACAAACCTTATATCCCTGAAGTTGCAATGG
AGCAGACAAAAGATACCAAGCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTAC
AAATCTC
Found at i:22368651 original size:15 final size:16
Alignment explanation
Indices: 22368631--22368663 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22368621 GATCAGGCCC
*
22368631 AAATCAGAC-CAAAAA
1 AAATCAAACACAAAAA
22368646 AAATCAAACACAAAAA
1 AAATCAAACACAAAAA
22368662 AA
1 AA
22368664 TAAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.73, C:0.18, G:0.03, T:0.06
Consensus pattern (16 bp):
AAATCAAACACAAAAA
Found at i:22369192 original size:20 final size:20
Alignment explanation
Indices: 22369167--22369206 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
22369157 TTAAAAATTG
22369167 CATATAGAAA-ATATATATAA
1 CATATA-AAATATATATATAA
22369187 CATATAAAATATATATATAA
1 CATATAAAATATATATATAA
22369207 ACAAAAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
CATATAAAATATATATATAA
Found at i:22373944 original size:7 final size:7
Alignment explanation
Indices: 22373932--22373956 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22373922 TTTTTACTCT
22373932 TTTTAGA
1 TTTTAGA
22373939 TTTTAGA
1 TTTTAGA
22373946 TTTTAGA
1 TTTTAGA
22373953 TTTT
1 TTTT
22373957 TTTGTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (7 bp):
TTTTAGA
Found at i:22375852 original size:20 final size:20
Alignment explanation
Indices: 22375827--22375881 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
22375817 TTACATTAAC
22375827 TTTAATATTAAGATAATAAA
1 TTTAATATTAAGATAATAAA
22375847 TTTAATATTAA-ATTAATAAA
1 TTTAATATTAAGA-TAATAAA
*
22375867 -TTACTATTAAGATAA
1 TTTAATATTAAGATAA
22375882 GTATTAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTAATATTAAGATAATAAA
Found at i:22376720 original size:42 final size:42
Alignment explanation
Indices: 22376661--22376745 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
22376651 GCAATTACTT
22376661 TAATCATGGAGTCAGTCCACAAGAAGTACCATGATTGAAAAC
1 TAATCATGGAGTCAGTCCACAAGAAGTACCATGATTGAAAAC
22376703 TAATCATGGAGTCAGTCCACAAGAAGTACCATGATTGAAAAC
1 TAATCATGGAGTCAGTCCACAAGAAGTACCATGATTGAAAAC
22376745 T
1 T
22376746 CCTTATTGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (42 bp):
TAATCATGGAGTCAGTCCACAAGAAGTACCATGATTGAAAAC
Found at i:22377593 original size:16 final size:16
Alignment explanation
Indices: 22377572--22377602 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22377562 CTATGCATGC
*
22377572 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
22377588 AAAATACAAAAGACA
1 AAAATACAAAAGACA
22377603 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:22382418 original size:16 final size:16
Alignment explanation
Indices: 22382397--22382428 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22382387 TTCTTAGTTT
22382397 AATTTTCATATTTCAC
1 AATTTTCATATTTCAC
22382413 AATTTTCATATTTCAC
1 AATTTTCATATTTCAC
22382429 CACATATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTTCATATTTCAC
Found at i:22383617 original size:17 final size:17
Alignment explanation
Indices: 22383595--22383631 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
22383585 TCCCTCCTCC
22383595 TTTTTCCATCACTTCAA
1 TTTTTCCATCACTTCAA
22383612 TTTTTCCATCACTTCAA
1 TTTTTCCATCACTTCAA
22383629 TTT
1 TTT
22383632 AATCATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTTCCATCACTTCAA
Found at i:22385161 original size:19 final size:18
Alignment explanation
Indices: 22385137--22385175 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
22385127 CTTATTTTAA
22385137 AATTATTCTTCTAAAAAAT
1 AATTATT-TTCTAAAAAAT
* *
22385156 AATTATTTTTTCAAAAAT
1 AATTATTTTCTAAAAAAT
22385174 AA
1 AA
22385176 CATAATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTATTTTCTAAAAAAT
Found at i:22385824 original size:3 final size:3
Alignment explanation
Indices: 22385816--22385847 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
22385806 CCCAAGGCCA
22385816 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
22385848 CGAAATATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22391747 original size:3 final size:3
Alignment explanation
Indices: 22391741--22391794 Score: 81
Period size: 3 Copynumber: 18.0 Consensus size: 3
22391731 AGATTATTAA
* *
22391741 ATG ATG ACG ATG ACG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
*
22391789 GTG ATG
1 ATG ATG
22391795 GTGACGAACC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.31, C:0.04, G:0.35, T:0.30
Consensus pattern (3 bp):
ATG
Found at i:22396877 original size:41 final size:42
Alignment explanation
Indices: 22396816--22396902 Score: 110
Period size: 41 Copynumber: 2.1 Consensus size: 42
22396806 TGGAAAATGC
*
22396816 ATAATTAAAAAAATAAATAAACATAACATG-A-AAAAATTAAAA
1 ATAATTAAAAAAATAAATAAA-ATAACAAGTACAAAAA-TAAAA
22396858 ATAA-TAAAAGAAAT-AATAAAATAACAAGTACAAAAATAAAA
1 ATAATTAAAA-AAATAAATAAAATAACAAGTACAAAAATAAAA
22396899 ATAA
1 ATAA
22396903 AATAATAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
40 7 0.17
41 21 0.51
42 13 0.32
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.20
Consensus pattern (42 bp):
ATAATTAAAAAAATAAATAAAATAACAAGTACAAAAATAAAA
Found at i:22398413 original size:615 final size:614
Alignment explanation
Indices: 22397234--22398430 Score: 1569
Period size: 615 Copynumber: 1.9 Consensus size: 614
22397224 AATAATACTA
**
22397234 GATTGAAGGGTATTTAAAAAGTGGGAGGATTAAAATTGTAAATATCCCTTCTTAATAAAAACATG
1 GATTGAAGGGTATTTAAAAAGCAGGAGGATTAAAATTGTAAATATCCCTTCTTAATAAAAACATG
* * ** ** **
22397299 CGAATTCTAGATGTGGATCGAATCGGGTCACGAGTTGCGTCAAATTATGTCGTTTTGACTTCTGG
66 CGAATTCCAAATGTGGATCGAATCGGACCACGAGTTGCGTCAAACGACATCGTTTTGACTTCTGG
* * * *
22397364 AAATCGGCCCAAAATAGTGTCGTTTTGCACTACTATTTTAGCCAATAATCTTTCAAAAAAATCAT
131 AAATCGGCCCAAAAGAGTGTCGTTTTGCACCACTACTTAAGCCAATAATCTTTCAAAAAAATCAT
* * * * * *
22397429 TTCAAACCCTAGTTTTTTTTTTAATTTGTAACCCTCTCCCCTCTAGTCAAGCCACCCTTTGGTCG
196 TTCAAACCCTAGTTTTTTTTTTAATCTGAAACCCTCTCCCCTCTAGCCAAGCCACCCTTCGGCCA
* * * * * *
22397494 GCCTTGACCCTAGTGAGTCACCGTCGTGCTAGCCATCAGTTTCCGGCGACAGCTTCGCCATTTCC
261 CCCTTGACCCGAGAGAGTCACCGTCGTGCTAGCCATCAGTTGCCGGCAACAGCTCCGCCATTTCC
* ** *
22397559 GGTGGCCGAAAAAACCCAAAATGCCCCATTTAACCCCCTTTTCAAGAGGAGCCCTATTTTGGGGT
326 GGTGCCCGAAAAAACCCAAAATGCCCCATTTAAAACCCTTTTCAAGAGGAGCCCCATTTTGGGGT
**
22397624 TAAAAACACTGGAATCTGGGCAAAATCAGGCAAAAAATAGAGAAACCATTCGGTTTCTTCTTCTC
391 TAAAAACACCAGAATCTGGGCAAAATCAGGCAAAAAATAGAGAAACCATTCGGTTTCTTCTTCTC
* *** *
22397689 TCCGGCGATTGAAATAGGTAAAAAAAAACTATTTTATTATTTTTCTATTTTTTCGAAGAATAAAT
456 TCCGGCAACCAAAACAGGTAAAAAAAAACTATTTTATTATTTTTCTATTTTTTCGAAGAATAAAT
*
22397754 AAAAACAAATTAAAAGAATCACATTTTTTTAATTTGATTTTTTTATTCGATTTCTCTTTTTTTTA
521 AAAAACAAATTAAAAGAATCACATTTTTTTAATTTGATTTTTTTATTCAATTTCT-TTTTTTTTA
22397819 ATAAAAAAAACCCACTTACAATCGGTTTTT
585 ATAAAAAAAACCCACTTACAATCGGTTTTT
22397849 GATTGAAGGGTATTTAAAAAGCAGGAGGATTAAAATT-TCAAATATCCCTTCTTAATAAAAACAC
1 GATTGAAGGGTATTTAAAAAGCAGGAGGATTAAAATTGT-AAATATCCCTTCTTAATAAAAACA-
* * * *
22397913 T-C-AGATTCCAAATGTGGATGGAGTCGGACCACGGGTTGCGTCAAAACGACATTGTTTTGACGT
64 TGCGA-ATTCCAAATGTGGATCGAATCGGACCACGAGTTGCGTC-AAACGACATCGTTTTGAC-T
*
22397976 T-TGGAAATCTGCCCAAAACGA-TGTCGTTTTGCACCACTACTTAAGCCAATAATCTTTCAAAAA
126 TCTGGAAATCGGCCCAAAA-GAGTGTCGTTTTGCACCACTACTTAAGCCAATAATCTTTCAAAAA
* * *
22398039 AATCATTTCACACCCTAG-TTTTTTTTTAATCTGAAATCCTCTCCCCTTTAGCCAAGCCACCCTT
190 AATCATTTCAAACCCTAGTTTTTTTTTTAATCTGAAACCCTCTCCCCTCTAGCCAAGCCACCCTT
* * *
22398103 CGGCCACCCTTGACCTCGACGAGTATTCACCGT-GT-C-GGCCA-CAGGTTGCCGGCAACGGCTC
255 CGGCCACCCTTGACC-CGA-GAG-AGTCACCGTCGTGCTAGCCATCA-GTTGCCGGCAACAGCTC
* * *
22398164 CGCCA-TTCTCGGTGCCC-AGGAAAACCCAAAATGCCCCTTTTTAAAACCCTTTTCAAGAGGATC
316 CGCCATTTC-CGGTGCCCGA-AAAAACCCAAAATGCCCC-ATTTAAAACCCTTTTCAAGAGGAGC
* * * * * *
22398227 CCCGTTTT-GGGTTAAAAACACCAGAGTCTGGGCAAAATCGGGCCAAAAATAGAGAAGCCCTTCG
378 CCCATTTTGGGGTTAAAAACACCAGAATCTGGGCAAAATCAGGCAAAAAATAGAGAAACCATTCG
* * *
22398291 GTTTCTTCTTCTCTCCGGCAACCAAAACAGGT-AAGAAAAACTCTTTTATTGTTTTTCTATTTTT
443 GTTTCTTCTTCTCTCCGGCAACCAAAACAGGTAAAAAAAAACTATTTTATTATTTTTCTATTTTT
* * *
22398355 TCGAAGAATAAATAAAAATAAATTAAGAGAATCACCCTTTTTTTTAATTTGA-TTTTTTATTCAA
508 TCGAAGAATAAATAAAAACAAATTAAAAGAATCA--CATTTTTTTAATTTGATTTTTTTATTCAA
22398419 TTTCTTTTTTTT
571 TTTCTTTTTTTT
22398431 AAACACCCAC
Statistics
Matches: 503, Mismatches: 64, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
614 76 0.15
615 281 0.56
616 131 0.26
617 7 0.01
618 8 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (614 bp):
GATTGAAGGGTATTTAAAAAGCAGGAGGATTAAAATTGTAAATATCCCTTCTTAATAAAAACATG
CGAATTCCAAATGTGGATCGAATCGGACCACGAGTTGCGTCAAACGACATCGTTTTGACTTCTGG
AAATCGGCCCAAAAGAGTGTCGTTTTGCACCACTACTTAAGCCAATAATCTTTCAAAAAAATCAT
TTCAAACCCTAGTTTTTTTTTTAATCTGAAACCCTCTCCCCTCTAGCCAAGCCACCCTTCGGCCA
CCCTTGACCCGAGAGAGTCACCGTCGTGCTAGCCATCAGTTGCCGGCAACAGCTCCGCCATTTCC
GGTGCCCGAAAAAACCCAAAATGCCCCATTTAAAACCCTTTTCAAGAGGAGCCCCATTTTGGGGT
TAAAAACACCAGAATCTGGGCAAAATCAGGCAAAAAATAGAGAAACCATTCGGTTTCTTCTTCTC
TCCGGCAACCAAAACAGGTAAAAAAAAACTATTTTATTATTTTTCTATTTTTTCGAAGAATAAAT
AAAAACAAATTAAAAGAATCACATTTTTTTAATTTGATTTTTTTATTCAATTTCTTTTTTTTTAA
TAAAAAAAACCCACTTACAATCGGTTTTT
Found at i:22398746 original size:24 final size:27
Alignment explanation
Indices: 22398719--22398768 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 27
22398709 GACTTTTAAT
22398719 GTTTTGGATT-T-TTT-TTTATTTTTG
1 GTTTTGGATTCTGTTTGTTTATTTTTG
*
22398743 GTTTTGTATTCTGTTTGTTTATTTTT
1 GTTTTGGATTCTGTTTGTTTATTTTT
22398769 TTAGTCTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 1 0.05
26 3 0.14
27 9 0.41
ACGTcount: A:0.08, C:0.02, G:0.16, T:0.74
Consensus pattern (27 bp):
GTTTTGGATTCTGTTTGTTTATTTTTG
Found at i:22404545 original size:617 final size:617
Alignment explanation
Indices: 22403372--22404605 Score: 2468
Period size: 617 Copynumber: 2.0 Consensus size: 617
22403362 CAACCATAAA
22403372 TCGAATCACACATCAACCATATAAGGCAAATATGCACAACCCAAAATGTGCCACAACACAAGCCA
1 TCGAATCACACATCAACCATATAAGGCAAATATGCACAACCCAAAATGTGCCACAACACAAGCCA
22403437 AATAAGTGGCTAATCTCAACAAAATACATATAGGCCAACATTAACCAGAATACCTAAACATGCTA
66 AATAAGTGGCTAATCTCAACAAAATACATATAGGCCAACATTAACCAGAATACCTAAACATGCTA
22403502 TTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATAGTGTGACATAACTCCG
131 TTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATAGTGTGACATAACTCCG
22403567 ACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAAAAACAACTACGTAAGT
196 ACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAAAAACAACTACGTAAGT
22403632 AATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTTCATCAATGAACTTTAT
261 AATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTTCATCAATGAACTTTAT
22403697 AGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATAACCATCAACATATAAA
326 AGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATAACCATCAACATATAAA
22403762 TGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAATAGGATTTTATAAACAT
391 TGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAATAGGATTTTATAAACAT
22403827 TAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTACTTACTTTCCATTCCAC
456 TAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTACTTACTTTCCATTCCAC
22403892 TTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATATTTATTCACATCATAGG
521 TTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATATTTATTCACATCATAGG
22403957 TAAGTTTATCCATAACATACGTAATTTCTCAT
586 TAAGTTTATCCATAACATACGTAATTTCTCAT
22403989 TCGAATCACACATCAACCATATAAGGCAAATATGCACAACCCAAAATGTGCCACAACACAAGCCA
1 TCGAATCACACATCAACCATATAAGGCAAATATGCACAACCCAAAATGTGCCACAACACAAGCCA
22404054 AATAAGTGGCTAATCTCAACAAAATACATATAGGCCAACATTAACCAGAATACCTAAACATGCTA
66 AATAAGTGGCTAATCTCAACAAAATACATATAGGCCAACATTAACCAGAATACCTAAACATGCTA
22404119 TTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATAGTGTGACATAACTCCG
131 TTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATAGTGTGACATAACTCCG
22404184 ACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAAAAACAACTACGTAAGT
196 ACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAAAAACAACTACGTAAGT
22404249 AATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTTCATCAATGAACTTTAT
261 AATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTTCATCAATGAACTTTAT
22404314 AGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATAACCATCAACATATAAA
326 AGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATAACCATCAACATATAAA
22404379 TGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAATAGGATTTTATAAACAT
391 TGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAATAGGATTTTATAAACAT
22404444 TAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTACTTACTTTCCATTCCAC
456 TAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTACTTACTTTCCATTCCAC
22404509 TTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATATTTATTCACATCATAGG
521 TTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATATTTATTCACATCATAGG
22404574 TAAGTTTATCCATAACATACGTAATTTCTCAT
586 TAAGTTTATCCATAACATACGTAATTTCTCAT
22404606 ATATAAGTAC
Statistics
Matches: 617, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
617 617 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (617 bp):
TCGAATCACACATCAACCATATAAGGCAAATATGCACAACCCAAAATGTGCCACAACACAAGCCA
AATAAGTGGCTAATCTCAACAAAATACATATAGGCCAACATTAACCAGAATACCTAAACATGCTA
TTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATAGTGTGACATAACTCCG
ACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAAAAACAACTACGTAAGT
AATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTTCATCAATGAACTTTAT
AGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATAACCATCAACATATAAA
TGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAATAGGATTTTATAAACAT
TAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTACTTACTTTCCATTCCAC
TTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATATTTATTCACATCATAGG
TAAGTTTATCCATAACATACGTAATTTCTCAT
Found at i:22405719 original size:838 final size:838
Alignment explanation
Indices: 22404103--22405780 Score: 3356
Period size: 838 Copynumber: 2.0 Consensus size: 838
22404093 ATTAACCAGA
22404103 ATACCTAAACATGCTATTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATA
1 ATACCTAAACATGCTATTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATA
22404168 GTGTGACATAACTCCGACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAA
66 GTGTGACATAACTCCGACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAA
22404233 AAACAACTACGTAAGTAATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTT
131 AAACAACTACGTAAGTAATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTT
22404298 CATCAATGAACTTTATAGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATA
196 CATCAATGAACTTTATAGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATA
22404363 ACCATCAACATATAAATGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAAT
261 ACCATCAACATATAAATGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAAT
22404428 AGGATTTTATAAACATTAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTAC
326 AGGATTTTATAAACATTAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTAC
22404493 TTACTTTCCATTCCACTTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATAT
391 TTACTTTCCATTCCACTTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATAT
22404558 TTATTCACATCATAGGTAAGTTTATCCATAACATACGTAATTTCTCATATATAAGTACATCATTC
456 TTATTCACATCATAGGTAAGTTTATCCATAACATACGTAATTTCTCATATATAAGTACATCATTC
22404623 AATTCATCAATCCCTTTTTCATCATATCACATTTCAATAATGAACTTACCGTTTCATTACCTTTT
521 AATTCATCAATCCCTTTTTCATCATATCACATTTCAATAATGAACTTACCGTTTCATTACCTTTT
22404688 ATTACCCGTTTCATTTGTATAATACCAGATATAAGCATAAACATTAATCATGATCTCAAACTTGA
586 ATTACCCGTTTCATTTGTATAATACCAGATATAAGCATAAACATTAATCATGATCTCAAACTTGA
22404753 CATAAGCCTAATCACCATCATCAATACACAAGTTAGTGCATTTAAGTATACAACTCATTTGGAGT
651 CATAAGCCTAATCACCATCATCAATACACAAGTTAGTGCATTTAAGTATACAACTCATTTGGAGT
22404818 CAATCACATGATAAATCATTTTATAAGAAAATTCACCTTTTGAATCATACCAGCTTTTCATGAAC
716 CAATCACATGATAAATCATTTTATAAGAAAATTCACCTTTTGAATCATACCAGCTTTTCATGAAC
22404883 ATAAGCATATTCCCATTTTTGTCATTTACCATTTCATTGTATATCATTAATATTAAAC
781 ATAAGCATATTCCCATTTTTGTCATTTACCATTTCATTGTATATCATTAATATTAAAC
22404941 ATACCTAAACATGCTATTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATA
1 ATACCTAAACATGCTATTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATA
22405006 GTGTGACATAACTCCGACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAA
66 GTGTGACATAACTCCGACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAA
22405071 AAACAACTACGTAAGTAATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTT
131 AAACAACTACGTAAGTAATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTT
22405136 CATCAATGAACTTTATAGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATA
196 CATCAATGAACTTTATAGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATA
22405201 ACCATCAACATATAAATGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAAT
261 ACCATCAACATATAAATGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAAT
22405266 AGGATTTTATAAACATTAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTAC
326 AGGATTTTATAAACATTAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTAC
22405331 TTACTTTCCATTCCACTTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATAT
391 TTACTTTCCATTCCACTTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATAT
22405396 TTATTCACATCATAGGTAAGTTTATCCATAACATACGTAATTTCTCATATATAAGTACATCATTC
456 TTATTCACATCATAGGTAAGTTTATCCATAACATACGTAATTTCTCATATATAAGTACATCATTC
22405461 AATTCATCAATCCCTTTTTCATCATATCACATTTCAATAATGAACTTACCGTTTCATTACCTTTT
521 AATTCATCAATCCCTTTTTCATCATATCACATTTCAATAATGAACTTACCGTTTCATTACCTTTT
22405526 ATTACCCGTTTCATTTGTATAATACCAGATATAAGCATAAACATTAATCATGATCTCAAACTTGA
586 ATTACCCGTTTCATTTGTATAATACCAGATATAAGCATAAACATTAATCATGATCTCAAACTTGA
22405591 CATAAGCCTAATCACCATCATCAATACACAAGTTAGTGCATTTAAGTATACAACTCATTTGGAGT
651 CATAAGCCTAATCACCATCATCAATACACAAGTTAGTGCATTTAAGTATACAACTCATTTGGAGT
22405656 CAATCACATGATAAATCATTTTATAAGAAAATTCACCTTTTGAATCATACCAGCTTTTCATGAAC
716 CAATCACATGATAAATCATTTTATAAGAAAATTCACCTTTTGAATCATACCAGCTTTTCATGAAC
22405721 ATAAGCATATTCCCATTTTTGTCATTTACCATTTCATTGTATATCATTAATATTAAAC
781 ATAAGCATATTCCCATTTTTGTCATTTACCATTTCATTGTATATCATTAATATTAAAC
22405779 AT
1 AT
22405781 GATATAATGT
Statistics
Matches: 840, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
838 840 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.34
Consensus pattern (838 bp):
ATACCTAAACATGCTATTATAACCAAAATCAAAACATCTGAAAGTACCGATAGAACCGATGGATA
GTGTGACATAACTCCGACAAGCTTCCAACCCCATCGAGCTTCCGATAATCTGTAAAGTAAGGGAA
AAACAACTACGTAAGTAATGAATGCTTAGTAAGCTCGTATAAACTTTAAACATAACATTCCATTT
CATCAATGAACTTTATAGATTAAATATAAACTTATACCAATGCCTCAAGATTTGTCAACTACATA
ACCATCAACATATAAATGAGTAAGTCTATCAACATCATATATATATATTTCATTCCTAACTTAAT
AGGATTTTATAAACATTAGACACCATCATTAATCTTTTCATAGAACTATGAATTACTTCATTTAC
TTACTTTCCATTCCACTTAGTAAGCATAAACTTAAATAACAAAATCAACTCACTGATTAGTATAT
TTATTCACATCATAGGTAAGTTTATCCATAACATACGTAATTTCTCATATATAAGTACATCATTC
AATTCATCAATCCCTTTTTCATCATATCACATTTCAATAATGAACTTACCGTTTCATTACCTTTT
ATTACCCGTTTCATTTGTATAATACCAGATATAAGCATAAACATTAATCATGATCTCAAACTTGA
CATAAGCCTAATCACCATCATCAATACACAAGTTAGTGCATTTAAGTATACAACTCATTTGGAGT
CAATCACATGATAAATCATTTTATAAGAAAATTCACCTTTTGAATCATACCAGCTTTTCATGAAC
ATAAGCATATTCCCATTTTTGTCATTTACCATTTCATTGTATATCATTAATATTAAAC
Found at i:22406021 original size:21 final size:21
Alignment explanation
Indices: 22405997--22406082 Score: 93
Period size: 21 Copynumber: 4.1 Consensus size: 21
22405987 CCGAAAACGC
22405997 GAACAAAAGCTCATAAGAGCT
1 GAACAAAAGCTCATAAGAGCT
*
22406018 GAACAATAA-CTCAAAAGAGCT
1 GAACAA-AAGCTCATAAGAGCT
* * *
22406039 GAACAGAAGCTCGTGAGAGCT
1 GAACAAAAGCTCATAAGAGCT
* * *
22406060 AAACAGAAGCTCGTAAGAGCT
1 GAACAAAAGCTCATAAGAGCT
22406081 GA
1 GA
22406083 TCCACCCGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
20 2 0.04
21 51 0.93
22 2 0.04
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.14
Consensus pattern (21 bp):
GAACAAAAGCTCATAAGAGCT
Found at i:22416967 original size:16 final size:16
Alignment explanation
Indices: 22416938--22416971 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
22416928 AGAATCTCAA
22416938 TTAACTATTTTAATTT
1 TTAACTATTTTAATTT
22416954 TTAA-TATTTATAATTT
1 TTAACTATTT-TAATTT
22416970 TT
1 TT
22416972 GAAGTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAACTATTTTAATTT
Found at i:22417845 original size:31 final size:31
Alignment explanation
Indices: 22417808--22417869 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
22417798 AATAGTCATA
*
22417808 GAACTATTCGAAAGTTCTCATTTAAGCCATT
1 GAACTATTCAAAAGTTCTCATTTAAGCCATT
* * *
22417839 GAACTATTCAAAAGTTTTTATTTAAGTCATT
1 GAACTATTCAAAAGTTCTCATTTAAGCCATT
22417870 AGATTGTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (31 bp):
GAACTATTCAAAAGTTCTCATTTAAGCCATT
Found at i:22418966 original size:18 final size:19
Alignment explanation
Indices: 22418933--22418968 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22418923 AATTTTTTTA
*
22418933 ATTTTATTTATGTAATTAG
1 ATTTTATTTATATAATTAG
22418952 ATTTT-TTTATATAATTA
1 ATTTTATTTATATAATTA
22418969 AAGGTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (19 bp):
ATTTTATTTATATAATTAG
Found at i:22419420 original size:16 final size:16
Alignment explanation
Indices: 22419386--22419420 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22419376 CCAAATTAAG
*
22419386 TTTTATATGTTCATAA
1 TTTTATATGTGCATAA
*
22419402 TTTTATATGTGCATTA
1 TTTTATATGTGCATAA
22419418 TTT
1 TTT
22419421 CATTTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.60
Consensus pattern (16 bp):
TTTTATATGTGCATAA
Found at i:22432277 original size:2 final size:2
Alignment explanation
Indices: 22432272--22432304 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
22432262 TCCTTTTATT
22432272 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
22432305 TCATATTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:22436308 original size:20 final size:19
Alignment explanation
Indices: 22436263--22436309 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
22436253 ATATGTATGT
* **
22436263 ATATATGTATATATAAATT
1 ATATAAGTATATATAAAAA
22436282 ATA-AAGTATATATAAAAAA
1 ATATAAGTATATAT-AAAAA
22436301 ATATAAGTA
1 ATATAAGTA
22436310 CGTACATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 9 0.39
19 9 0.39
20 5 0.22
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (19 bp):
ATATAAGTATATATAAAAA
Found at i:22436355 original size:18 final size:18
Alignment explanation
Indices: 22436332--22436371 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
22436322 AAAATTAAAA
22436332 ATATGTAAGTATGTATAT
1 ATATGTAAGTATGTATAT
22436350 ATATGTAAGTATGTATAT
1 ATATGTAAGTATGTATAT
22436368 ATAT
1 ATAT
22436372 AACAAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (18 bp):
ATATGTAAGTATGTATAT
Found at i:22436434 original size:3 final size:3
Alignment explanation
Indices: 22436428--22436495 Score: 70
Period size: 3 Copynumber: 23.3 Consensus size: 3
22436418 AGGTAAGTAG
* **
22436428 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA CTAA TTA TTT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
*
22436473 TAA TAA TAA -AA -AA TAA CAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
22436496 GAGACTAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
2 6 0.11
3 48 0.86
4 2 0.04
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:22437648 original size:19 final size:19
Alignment explanation
Indices: 22437612--22437659 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
22437602 TTTTATTCGG
*
22437612 GTTTGGGCCACATTTTTAT
1 GTTTGGGCCACATGTTTAT
22437631 GTTTGGGCCAC-TGGTTTAT
1 GTTTGGGCCACAT-GTTTAT
*
22437650 TTATTGGGCC
1 GT-TTGGGCC
22437660 CGGGCAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.68
20 7 0.28
ACGTcount: A:0.12, C:0.17, G:0.27, T:0.44
Consensus pattern (19 bp):
GTTTGGGCCACATGTTTAT
Found at i:22442944 original size:20 final size:20
Alignment explanation
Indices: 22442919--22442958 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22442909 CTGGATCGAT
*
22442919 AATAATTAAAAATTAATAAA
1 AATAATAAAAAATTAATAAA
*
22442939 AATAATAAAAAATTATTAAA
1 AATAATAAAAAATTAATAAA
22442959 TCGGTTCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAATAAAAAATTAATAAA
Found at i:22449850 original size:25 final size:26
Alignment explanation
Indices: 22449804--22449856 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
22449794 GATACATTTA
* * *
22449804 AAATATTCATGATAAATTAAAA-AAT
1 AAATATACATGACAAATCAAAATAAT
*
22449829 AAATATACATGACAACTCAAAATAAT
1 AAATATACATGACAAATCAAAATAAT
22449855 AA
1 AA
22449857 TCCATAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.60, C:0.09, G:0.04, T:0.26
Consensus pattern (26 bp):
AAATATACATGACAAATCAAAATAAT
Found at i:22451436 original size:44 final size:44
Alignment explanation
Indices: 22451378--22451804 Score: 271
Period size: 44 Copynumber: 9.9 Consensus size: 44
22451368 ACTGGATGCG
* *
22451378 ATCTGCTCTACTGCAACTTCAGAGAAATAAGATATGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTA
* * * *
22451422 ATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TG-GCTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTT-TT-A
* *
22451466 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA-GATGCG-----
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TATG-TG-GTTTTA
* *
22451507 ATCTGCTCTACTGCAACTTCAGAGAAATAAGATATGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTA
* * * *
22451551 ATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TG-GCTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTT-TT-A
* * * * ***
22451595 GTCTGCTCCACTGCAACTTCAGGGAGATAAG--A-CTGGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTA
* * * *
22451636 ATCTGTTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTA
* * * * * * *
22451680 ATCTGCTCCACTGTAATTTCAGTGAGATAGGAT-T-AGCTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTT-TT-A
* * * * * *
22451724 GTCTGCTCCACTGTAACTTCAG-GAAGATAAG--A-CTGGATGTG
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGATATGTGGTTTTA
* *
22451765 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGT
22451805 GATTTGTAGC
Statistics
Matches: 292, Mismatches: 62, Indels: 58
0.71 0.15 0.14
Matches are distributed among these distances:
39 1 0.00
40 4 0.01
41 81 0.28
42 11 0.04
43 16 0.05
44 176 0.60
45 2 0.01
47 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTA
Found at i:22451450 original size:85 final size:85
Alignment explanation
Indices: 22451298--22451708 Score: 313
Period size: 85 Copynumber: 4.8 Consensus size: 85
22451288 CTTCAATTCA
* * * * * * *
22451298 CTCCGCTGTAACTTCATG-GAGATAAGGT-TAGTGGCTTTAATCTACTTCACTGTAACTTCAGGG
1 CTCCACTGCAACTTCA-GAGAGATAAGATAT-GTGGTTTTAATCTGCTCCACTGCAACTTCAGGG
22451361 AGATAAGACTGGATGCGATCTG
64 AGATAAGACTGGATGCGATCTG
* *
22451383 CTCTACTGCAACTTCAGAGAAATAAGATATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
22451448 ATAGGATTGGCTTCTTCTG-TCTG
66 ATAAGACTGG---ATGC-GATCTG
* * *
22451471 CTCCACTGCAACTTCAGGGAGATAAGACTA-GATGCG-----ATCTGCTCTACTGCAACTTCAGA
1 CTCCACTGCAACTTCAGAGAGATAAGA-TATG-TG-GTTTTAATCTGCTCCACTGCAACTTCAGG
* * * ***
22451530 GAAATAAGATATGTGGTTTTAATCTG
63 GAGATAAG--A-CTGGATGCGATCTG
* * * **
22451556 CTCCACTGCAACTTCAGGGAGATAGGAT-TG-GCTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
1 CTCCACTGCAACTTCAGAGAGATAAGATATGTGGTT-TT-AATCTGCTCCACTGCAACTTCAGGG
22451619 AGATAAGACTGGATGCGATCTG
64 AGATAAGACTGGATGCGATCTG
* * * * * * *
22451641 TTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGTAATTTCAGTGAG
1 CTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAG
22451706 ATA
66 ATA
22451709 GGATTAGCTT
Statistics
Matches: 257, Mismatches: 46, Indels: 46
0.74 0.13 0.13
Matches are distributed among these distances:
82 1 0.00
84 3 0.01
85 176 0.68
86 6 0.02
87 4 0.02
88 61 0.24
89 5 0.02
90 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (85 bp):
CTCCACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTGGATGCGATCTG
Found at i:22451537 original size:129 final size:129
Alignment explanation
Indices: 22451345--22451804 Score: 785
Period size: 129 Copynumber: 3.6 Consensus size: 129
22451335 TAATCTACTT
*
22451345 CACTGTAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGA
22451410 TATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTC
66 TATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTC
*
22451474 CACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGA
22451539 TATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTC
66 TATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTC
* * *
22451603 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGTTCTACTGCAACTTTAGAGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGA
* * * * *
22451668 TCTGTGGTTTTAATCTGCTCCACTGTAATTTCAGTGAGATAGGATTAGCTTCTTCTGTCTGCTC
66 TATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTC
* * * *
22451732 CACTGTAACTTCAGGAAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGA
*
22451797 TCTGTGGT
66 TATGTGGT
22451805 GATTTGTAGC
Statistics
Matches: 315, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 315 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (129 bp):
CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGA
TATGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTC
Found at i:22451769 original size:85 final size:85
Alignment explanation
Indices: 22451422--22451797 Score: 318
Period size: 85 Copynumber: 4.4 Consensus size: 85
22451412 TGTGGTTTTA
* *
22451422 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCA
* * *
22451487 GGGAGATAAGACTAGATGCG
66 GGAAGATAAGACTGGATGTG
* * * **
22451507 ATCTGCTCTACTGCAACTTCAGAGAAATAAGATATGTGGTT-TT-AATCTGCTCCACTGCAACTT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGAT-TG-GCTTCTTCTGTCTGCTCCACTGCAACTT
* * * * *
22451570 CAGGGAGATAGGATTGGCTTCTTCTG
64 CAGGAAGATAAGACTGG----ATGTG
* * * * * *
22451596 -TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGT-T-CT--ACTGCAACTTT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGCTTC-TTCTGTCTGCTCCACTGCAACTTC
* * *
22451656 A-GAGAGATAAGATCTGTGGTTTTA
65 AGGA-AGATAAGA-C--TGGATGTG
* * * * * *
22451680 ATCTGCTCCACTGTAATTTCAGTGAGATAGGATTAGCTTCTTCTGTCTGCTCCACTGTAACTTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCA
22451745 GGAAGATAAGACTGGATGTG
66 GGAAGATAAGACTGGATGTG
*
22451765 ATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGAT
22451798 CTGTGGTGAT
Statistics
Matches: 225, Mismatches: 47, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
84 9 0.04
85 144 0.64
86 8 0.04
87 8 0.04
88 51 0.23
89 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (85 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCA
GGAAGATAAGACTGGATGTG
Found at i:22451960 original size:44 final size:44
Alignment explanation
Indices: 22451813--22451985 Score: 123
Period size: 44 Copynumber: 3.9 Consensus size: 44
22451803 GTGATTTGTA
* * * *
22451813 GCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGATTCACTG
1 GCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATT-ACTG
* * ** ** * * *
22451858 TCTTCAGTCTGCTCTGCTGTAACTTCAGGGAGACAAGACTT-GTA
1 GCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGA-TTACTG
* * * *
22451902 ACTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTG
1 GCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTACTG
* * * **
22451946 GCTTTAATCTGCTCCATTGCAACTTCAATGAGATAAGATT
1 GCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATT
22451986 CGCCATCTTC
Statistics
Matches: 94, Mismatches: 32, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
43 2 0.02
44 63 0.67
45 27 0.29
46 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTACTG
Found at i:22453341 original size:44 final size:43
Alignment explanation
Indices: 22453272--22453358 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 43
22453262 TATTTATTTA
* *
22453272 TTTTTTTAGACTCAAAGCGCTTTTTGCTGGTTTTCACCTTGGT
1 TTTTTTTAGACTCAAAGCGCCTTTTGCGGGTTTTCACCTTGGT
* *
22453315 TTTTTTTATGACTCAAAGTGCCTTTTGCGGGTTTTCACTTTGGT
1 TTTTTTTA-GACTCAAAGCGCCTTTTGCGGGTTTTCACCTTGGT
22453359 CCCTTCTTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 8 0.21
44 31 0.79
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (43 bp):
TTTTTTTAGACTCAAAGCGCCTTTTGCGGGTTTTCACCTTGGT
Found at i:22456411 original size:3 final size:3
Alignment explanation
Indices: 22456403--22456444 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
22456393 CAACTTGTTT
22456403 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
22456445 TAATAATAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:22456449 original size:3 final size:3
Alignment explanation
Indices: 22456443--22456489 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
22456433 CAACAACAAC
* *
22456443 AAT AAT AAT AAT AAT CAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
22456490 CTATCTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:22460050 original size:4 final size:4
Alignment explanation
Indices: 22460041--22460161 Score: 179
Period size: 4 Copynumber: 30.2 Consensus size: 4
22460031 AACAATTTGG
* *
22460041 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGT ATGT ATGT ATTT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
22460089 ATGT ATGT ATTT ATGT ATGT ATGT ATGT ATGT ATGT ATGT CTAT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* *
22460137 ATGT CTGT ATGT ATGT CTGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT A
22460162 ACACCCCTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 103 1.00
ACGTcount: A:0.24, C:0.03, G:0.22, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:22461616 original size:102 final size:103
Alignment explanation
Indices: 22461432--22461628 Score: 297
Period size: 102 Copynumber: 1.9 Consensus size: 103
22461422 CCAGTGATTC
* * * *
22461432 GGGGAATCAGCACTTAGCAACTCCTTTCACATTAAAAGATATGATGGAATCAGCACTTAGCAACC
1 GGGGAATCAACACTTAGCAACGCCCTTCACATTAAAAGATACGATGGAATCAGCACTTAGCAACC
* *
22461497 ACCAATGATTCGAGGAATCAGCACTTAGCAGCCCTTTG
66 ACCAATGAATCGAGGAATCAACACTTAGCAGCCCTTTG
* * *
22461535 GGGGAATCAACACTTAGCAACGCCCTTCACATTTAAA-ATACGGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAACACTTAGCAACGCCCTTCACATTAAAAGATACGATGGAATCAGCACTTAGCAACC
*
22461599 ACCAATGAATCGGGGAATCAACACTTAGCA
66 ACCAATGAATCGAGGAATCAACACTTAGCA
22461629 ACCCCCTTTA
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 51 0.61
103 33 0.39
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (103 bp):
GGGGAATCAACACTTAGCAACGCCCTTCACATTAAAAGATACGATGGAATCAGCACTTAGCAACC
ACCAATGAATCGAGGAATCAACACTTAGCAGCCCTTTG
Found at i:22461629 original size:33 final size:33
Alignment explanation
Indices: 22461582--22461707 Score: 126
Period size: 33 Copynumber: 3.5 Consensus size: 33
22461572 ATACGGTGGG
*
22461582 ATCAGCACTTAGCAACCACCAATGAATCGGGGA
1 ATCAACACTTAGCAACCACCAATGAATCGGGGA
* *
22461615 ATCAACACTTAGCAACCCCCTTTATATTCAAAGATACGGCGGA
1 ATCAACACTTAGCAACCACC---A-A-T--GA-AT-CGG-GGA
*
22461658 ATCAACACTTAGCAACCACCAATGAGTCGGGGA
1 ATCAACACTTAGCAACCACCAATGAATCGGGGA
22461691 ATCAACACTTAGCAACC
1 ATCAACACTTAGCAACC
22461708 CCTTGGGGGA
Statistics
Matches: 77, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
33 38 0.49
34 3 0.04
35 1 0.01
36 2 0.03
37 1 0.01
38 2 0.03
39 1 0.01
40 2 0.03
41 2 0.03
42 3 0.04
43 22 0.29
ACGTcount: A:0.37, C:0.29, G:0.17, T:0.18
Consensus pattern (33 bp):
ATCAACACTTAGCAACCACCAATGAATCGGGGA
Found at i:22461682 original size:76 final size:75
Alignment explanation
Indices: 22461535--22461709 Score: 269
Period size: 76 Copynumber: 2.3 Consensus size: 75
22461525 CAGCCCTTTG
* * * * *
22461535 GGGGAATCAACACTTAGCAACGCCCTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTCAAAATACGGCGGAATCAACACTTAGCAACCA
22461600 CCAATGAATC
66 CCAATGAATC
* *
22461610 GGGGAATCAACACTTAGCAACCCCCTTTATATTCAAAGATACGGCGGAATCAACACTTAGCAACC
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTCAAA-ATACGGCGGAATCAACACTTAGCAACC
*
22461675 ACCAATGAGTC
65 ACCAATGAATC
22461686 GGGGAATCAACACTTAGCAACCCC
1 GGGGAATCAACACTTAGCAACCCC
22461710 TTGGGGGAAT
Statistics
Matches: 91, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
75 33 0.36
76 58 0.64
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (75 bp):
GGGGAATCAACACTTAGCAACCCCCTTCACATTCAAAATACGGCGGAATCAACACTTAGCAACCA
CCAATGAATC
Found at i:22461716 original size:178 final size:178
Alignment explanation
Indices: 22461407--22461739 Score: 497
Period size: 178 Copynumber: 1.9 Consensus size: 178
22461397 CGGTGGATTT
* * * *
22461407 AGCACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACTCCTTTCACATTAAAAGAT
1 AGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTTTCACATTAAAAGAT
* * * * * * *
22461472 ATGATGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGCAGCCCTTTGGG
66 ACGACGGAATCAACACTTAGCAACCACCAATGAGTCGAGGAATCAACACTTAGCAACCCCTTGGG
*
22461537 GGAATCAACACTTAGCAACGCCCTTCACATTTAAAATACGGTGGGATC
131 GGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGGATC
* *
22461585 AGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCCTTT-ATATTCAAAGA
1 AGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA-CCCCTTTCACATTAAAAGA
* *
22461649 TACGGCGGAATCAACACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTGG
65 TACGACGGAATCAACACTTAGCAACCACCAATGAGTCGAGGAATCAACACTTAGCAACCCCTTGG
*
22461714 GGGAATCAGCACTTAGCAACCCCCTT
130 GGGAATCAACACTTAGCAACCCCCTT
22461740 TATATTCAAT
Statistics
Matches: 137, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
178 131 0.96
179 6 0.04
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (178 bp):
AGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTTTCACATTAAAAGAT
ACGACGGAATCAACACTTAGCAACCACCAATGAGTCGAGGAATCAACACTTAGCAACCCCTTGGG
GGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGGATC
Done.